Pregenerated sensors for PIRA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000089942Ensembl transcript IDs: ENSMUST00000108615.10, ENSMUST00000119469.2
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGGTGGGACAGCCTATTCCCTCACTTTATGGGCTCAGAAGAGTGTaGGTTCAGGAAACAAAGGCTCCCAGTATGTGGAGGGACAGTAAT | + |
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Preference number: 1 (lower is better) Translates to: QVGQPIPSLYGLRRV*VQETKAPSMWRDSN Trigger: ATTACTGTCCCTCCACATACTGGGAGCCTTTGTTTCCTGAACCCACACTCTTCTGAGCCCATAAAGTGAGGGAATAGGCTGTCCCACCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR CCA 90 bp | GGGCTCAGAAGAGTGTGGGTTCAGGAAACAAAGGCTCCCAGTATGTaGAGGGACAGTAATTCATTTATTGAGGAAGCACCTCATTATGAC | + |
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Preference number: 1 (lower is better) Translates to: GLRRVWVQETKAPSM*RDSNSFIEEAPHYD Trigger: GTCATAATGAGGTGCTTCCTCAATAAATGAATTACTGTCCCTCCACATACTGGGAGCCTTTGTTTCCTGAACCCACACTCTTCTGAGCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR CCA 90 bp | AATACAGAAAAATACAATTCACAGGTGAAAGATATTCCAGGCAGGTaGGACAGCCTATTCCCTCACTTTATGGGCTCAGAAGAGTGTGGG | + |
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Preference number: 1 (lower is better) Translates to: NTEKYNSQVKDIPGR*DSLFPHFMGSEECG Trigger: CCCACACTCTTCTGAGCCCATAAAGTGAGGGAATAGGCTGTCCCACCTGCCTGGAATATCTTTCACCTGTGAATTGTATTTTTCTGTATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR CAA 90 bp | TGCTTTCCAGGAGGTCTGCTGCCACAAGGAACATCAACTAAGCCTTaGTCTCCCAAGCCCCTGCCCACCAAGTTGCCTGAAAGAACACAC | + |
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Preference number: 2 (lower is better) Translates to: CFPGGLLPQGTSTKP*SPKPLPTKLPERTH Trigger: GTGTGTTCTTTCAGGCAACTTGGTGGGCAGGGGCTTGGGAGACAAAGGCTTAGTTGATGTTCCTTGTGGCAGCAGACCTCCTGGAAAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR-3UTR CCA 90 bp | TTCCAGGAGGTCTGCTGCCACAAGGAACATCAACTAAGCCTTTGTCTCCCAAGCGATATTCCAGGCAGGTaGGACAGCCTATTCCCTCAC | + |
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Preference number: 2 (lower is better) Translates to: FQEVCCHKEHQLSLCLPSDIPGR*DSLFPH Trigger: GTGAGGGAATAGGCTGTCCCACCTGCCTGGAATATC...GCTTGGGAGACAAAGGCTTAGTTGATGTTCCTTGTGGCAGCAGACCTCCTGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR CAA 90 bp | GGAACATCAACTAAGCCTTTGTCTCCCAAGCCCCTGCCCACCAAGTaGCCTGAAAGAACACACAATGGCAGTAGGCTAATACATACACCC | + |
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Preference number: 2 (lower is better) Translates to: GTSTKPLSPKPLPTK*PERTHNGSRLIHTP Trigger: GGGTGTATGTATTAGCCTACTGCCATTGTGTGTTCTTTCAGGCAACTTGGTGGGCAGGGGCTTGGGAGACAAAGGCTTAGTTGATGTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR CAA 90 bp | AGGAAACAAAGGCTCCCAGTATGTGGAGGGACAGTAATTCATTTATaGAGGAAGCACCTCATTATGACACTTCCACTTCCCTCTGAACCC | + |
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Preference number: 2 (lower is better) Translates to: RKQRLPVCGGTVIHL*RKHLIMTLPLPSEP Trigger: GGGTTCAGAGGGAAGTGGAAGTGTCATAATGAGGTGCTTCCTCAATAAATGAATTACTGTCCCTCCACATACTGGGAGCCTTTGTTTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR-3UTR GCA 90 bp | GGATTCAGTATTTTCAGATCTTTCTCTGCAGTGTTCAGTTGTGGGTATCTGCATTCCTACCCCAAGGACTaGATGCTTTCCAGGAGGTCT | + |
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Preference number: 2 (lower is better) Translates to: GFSIFRSFSAVFSCGYLHSYPKD*MLSRRS Trigger: AGACCTCCTGGAAAGCATGCAGTCCTTGGGGTAGGA...ATGCAGATACCCACAACTGAACACTGCAGAGAAAGATCTGAAAATACTGAATCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR-3UTR GCA 90 bp | AGATCTTTCTCTGCAGTGTTCAGTTGTGGGTATCTGCATAAGTTCCCATCTCCTCGACCCTCCTGTATATaGACACTCACACACATACAA | + |
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Preference number: 2 (lower is better) Translates to: RSFSAVFSCGYLHKFPSPRPSCI*TLTHIQ Trigger: TTGTATGTGTGTGAGTGTGCATATACAGGAGGGTCG...AGGAGATGGGAACTTATGCAGATACCCACAACTGAACACTGCAGAGAAAGATCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR-3UTR GCA 90 bp | CTTTTGCAAGTATTTACCCATTCAGGATTCAGTATTTTCAGATCTTTCTCTGCAGCTTTCCAGGAGGTCTaGTGCCACAAGGAACATCAA | + |
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Preference number: 2 (lower is better) Translates to: LLQVFTHSGFSIFRSFSAAFQEV*CHKEHQ Trigger: TTGATGTTCCTTGTGGCAGCAGACCTCCTGGAAAGC...TGCAGAGAAAGATCTGAAAATACTGAATCCTGAATGGGTAAATACTTGCAAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR-3UTR CCA 90 bp | GATCTTTCTCTGCAGTGTTCAGTTGTGGGTATCTGCATAAGTTCCCATCTCCTGTTTGACAGAAAACTTTaGGTCATCAGCTTTATTTCC | + |
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Preference number: 2 (lower is better) Translates to: DLSLQCSVVGICISSHLLFDRKL*VISFIS Trigger: GGAAATAAAGCTGATGACCCAAAGTTTTCTGTCAAA...CAGGAGATGGGAACTTATGCAGATACCCACAACTGAACACTGCAGAGAAAGATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR-3UTR CCA 90 bp | CTTTTGCAAGTATTTACCCATTCAGGATTCAGTATTTTCAGATCTTTCTCTGCAAAGGCTCCCAGTATGTaGAGGGACAGTAATTCATTT | + |
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Preference number: 2 (lower is better) Translates to: LLQVFTHSGFSIFRSFSAKAPSM*RDSNSF Trigger: AAATGAATTACTGTCCCTCCACATACTGGGAGCCTT...TGCAGAGAAAGATCTGAAAATACTGAATCCTGAATGGGTAAATACTTGCAAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR GCA 72 bp | CTACCCCAAGGACTGCATGCTTTCCAGGAGGTCTGCTaGCACAAGGAACATCAACTAAGCCTTTGTCTCCCA | + |
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Preference number: 3 (lower is better) Translates to: LPQGLHAFQEVC*HKEHQLSLCLP Trigger: TGGGAGACAAAGGCTTAGTTGATGTTCCTTGTGGCAGCAGACCTCCTGGAAAGCATGCAGTCCTTGGGGTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR-3UTR CAA 90 bp | ATCTCCTGCAGGAGGATGCTGAGCAAGACATTGACCCAGGAGTCATTTTATTGGACATCAACTAAGCCTTaGTCTCCCAAGCCCCTGCCC | + |
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Preference number: 3 (lower is better) Translates to: ISCRRMLSKTLTQESFYWTSTKP*SPKPLP Trigger: GGGCAGGGGCTTGGGAGACAAAGGCTTAGTTGATGT...CCAATAAAATGACTCCTGGGTCAATGTCTTGCTCAGCATCCTCCTGCAGGAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR GCA 72 bp | TTCCTACCCCAAGGACTGCATGCTTTCCAGGAGGTCTaGTGCCACAAGGAACATCAACTAAGCCTTTGTCTC | + |
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Preference number: 3 (lower is better) Translates to: FLPQGLHAFQEV*CHKEHQLSLCL Trigger: GAGACAAAGGCTTAGTTGATGTTCCTTGTGGCAGCAGACCTCCTGGAAAGCATGCAGTCCTTGGGGTAGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR CCA 72 bp | CAGCCTATTCCCTCACTTTATGGGCTCAGAAGAGTGTaGGTTCAGGAAACAAAGGCTCCCAGTATGTGGAGG | + |
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Preference number: 3 (lower is better) Translates to: QPIPSLYGLRRV*VQETKAPSMWR Trigger: CCTCCACATACTGGGAGCCTTTGTTTCCTGAACCCACACTCTTCTGAGCCCATAAAGTGAGGGAATAGGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR GCA 72 bp | AAGGAACATCAACTAAGCCTTTGTCTCCCAAGCCCCTaGCCACCAAGTTGCCTGAAAGAACACACAATGGCA | + |
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Preference number: 3 (lower is better) Translates to: KEHQLSLCLPSP*PPSCLKEHTMA Trigger: TGCCATTGTGTGTTCTTTCAGGCAACTTGGTGGGCAGGGGCTTGGGAGACAAAGGCTTAGTTGATGTTCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR GCA 72 bp | TCAGATCTTTCTCTGCAGTGTTCAGTTGTGGGTATCTaGATAAGTTCCCATCTCCTGCAGGAGGATGCTGAG | + |
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Preference number: 3 (lower is better) Translates to: SDLSLQCSVVGI*ISSHLLQEDAE Trigger: CTCAGCATCCTCCTGCAGGAGATGGGAACTTATGCAGATACCCACAACTGAACACTGCAGAGAAAGATCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR TCA 72 bp | GAGGAAGCACCTCATTATGACACTTCCACTTCCCTCTaGACCCCAAACTTTTGCTTCCTAGACATTCTTACA | + |
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Preference number: 3 (lower is better) Translates to: EEAPHYDTSTSL*TPNFCFLDILT Trigger: TGTAAGAATGTCTAGGAAGCAAAAGTTTGGGGTTCAGAGGGAAGTGGAAGTGTCATAATGAGGTGCTTCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR CCA 72 bp | AAATACAATTCACAGGTGAAAGATATTCCAGGCAGGTaGGACAGCCTATTCCCTCACTTTATGGGCTCAGAA | + |
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Preference number: 3 (lower is better) Translates to: KYNSQVKDIPGR*DSLFPHFMGSE Trigger: TTCTGAGCCCATAAAGTGAGGGAATAGGCTGTCCCACCTGCCTGGAATATCTTTCACCTGTGAATTGTATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR-3UTR CAA 90 bp | AGATCTTTCTCTGCAGTGTTCAGTTGTGGGTATCTGCATAAGTTCCCATCTCCTCTGAACCCCAAACTTTaGCTTCCTAGACATTCTTAC | + |
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Preference number: 3 (lower is better) Translates to: RSFSAVFSCGYLHKFPSPLNPKL*LPRHSY Trigger: GTAAGAATGTCTAGGAAGCAAAAGTTTGGGGTTCAG...AGGAGATGGGAACTTATGCAGATACCCACAACTGAACACTGCAGAGAAAGATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | TTCCAGGAGGTCTGCTGCCACAAGGAACATCAACTAAGCCTTTGTCTCCCAAGCGCACCTGTAGGTGCCTaGGAGATGGGAGGTCACAGC | + |
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Preference number: 4 (lower is better) Translates to: FQEVCCHKEHQLSLCLPSAPVGA*EMGGHS Trigger: GCTGTGACCTCCCATCTCTCAGGCACCTACAGGTGC...GCTTGGGAGACAAAGGCTTAGTTGATGTTCCTTGTGGCAGCAGACCTCCTGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR CAA 72 bp | GGAGGTCTGCTGCCACAAGGAACATCAACTAAGCCTTaGTCTCCCAAGCCCCTGCCCACCAAGTTGCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: GGLLPQGTSTKP*SPKPLPTKLPE Trigger: TTCAGGCAACTTGGTGGGCAGGGGCTTGGGAGACAAAGGCTTAGTTGATGTTCCTTGTGGCAGCAGACCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | TTATGGGCTCAGAAGAGTGTGGGTTCAGGAAACAAAGGCTCCCAGTATGTGGAGAGGGTATGGCCTTGGTaGGTCAGCAGAGAGGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: LWAQKSVGSGNKGSQYVERVWPW*VSREGF Trigger: GAAGCCCTCTCTGCTGACTCACCAAGGCCATACCCT...CTCCACATACTGGGAGCCTTTGTTTCCTGAACCCACACTCTTCTGAGCCCATAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | TTATGGGCTCAGAAGAGTGTGGGTTCAGGAAACAAAGGCTCCCAGTATGTGGAGCAGGGGTTGCTGGGCTaGTCCCTCCTTGGACAGAAT | + |
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Preference number: 4 (lower is better) Translates to: LWAQKSVGSGNKGSQYVEQGLLG*SLLGQN Trigger: ATTCTGTCCAAGGAGGGATCAGCCCAGCAACCCCTG...CTCCACATACTGGGAGCCTTTGTTTCCTGAACCCACACTCTTCTGAGCCCATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | ATTCCCTCACTTTATGGGCTCAGAAGAGTGTGGGTTCAGGAAACAAAGGCTCCCAGGGCTGGGCAGTACTaGCAGCCTGGGTTCATAGTA | + |
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Preference number: 4 (lower is better) Translates to: IPSLYGLRRVWVQETKAPRAGQY*QPGFIV Trigger: TACTATGAACCCAGGCTGTCAGTACTGCCCAGCCCT...GGGAGCCTTTGTTTCCTGAACCCACACTCTTCTGAGCCCATAAAGTGAGGGAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | GGTAAGCGTCTCCTCACCAAGCCCTGTCCTGCCAACTCCCCTGAAAACTTAGGATCTGCCTGGGACTGCTaGTCATGGGACTTTGATTTT | + |
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Preference number: 4 (lower is better) Translates to: GKRLLTKPCPANSPENLGSAWDC*SWDFDF Trigger: AAAATCAAAGTCCCATGATCAGCAGTCCCAGGCAGA...TCCTAAGTTTTCAGGGGAGTTGGCAGGACAGGGCTTGGTGAGGAGACGCTTACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | ATTCCCTCACTTTATGGGCTCAGAAGAGTGTGGGTTCAGGAAACAAAGGCTCCCAAGAGCACTAGGTACTaGCCACAGCTGTGGGGCATT | + |
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Preference number: 4 (lower is better) Translates to: IPSLYGLRRVWVQETKAPKSTRY*PQLWGI Trigger: AATGCCCCACAGCTGTGGTCAGTACCTAGTGCTCTT...GGGAGCCTTTGTTTCCTGAACCCACACTCTTCTGAGCCCATAAAGTGAGGGAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | TTATGGGCTCAGAAGAGTGTGGGTTCAGGAAACAAAGGCTCCCAGTATGTGGAGTTTTTGGAGATTACCTaGGACCAGGAGCTCCACGGA | + |
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Preference number: 4 (lower is better) Translates to: LWAQKSVGSGNKGSQYVEFLEIT*DQELHG Trigger: TCCGTGGAGCTCCTGGTCTCAGGTAATCTCCAAAAA...CTCCACATACTGGGAGCCTTTGTTTCCTGAACCCACACTCTTCTGAGCCCATAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | GTGTGGGTTCAGGAAACAAAGGCTCCCAGTATGTGGAGGGACAGTAATTCATTTAGAAACACTGCAGGGTaGGGGTCATTCCAGGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: VWVQETKAPSMWRDSNSFRNTAG*GSFQGP Trigger: TGGACCCTGGAATGACCCTCACCCTGCAGTGTTTCT...AAATGAATTACTGTCCCTCCACATACTGGGAGCCTTTGTTTCCTGAACCCACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | ATTCCCTCACTTTATGGGCTCAGAAGAGTGTGGGTTCAGGAAACAAAGGCTCCCTGGACAGCCCTGAGATaGGTATTTGTTGAAGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: IPSLYGLRRVWVQETKAPWTALR*VFVEEH Trigger: GTGCTCTTCAACAAATACTCATCTCAGGGCTGTCCA...GGGAGCCTTTGTTTCCTGAACCCACACTCTTCTGAGCCCATAAAGTGAGGGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | ATCTCCTGCAGGAGGATGCTGAGCAAGACATTGACCCAGGAGTCATTTTATTGGGGATTCAATGGTTTCTaGGACTGTGAGCTCCACAGG | + |
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Preference number: 4 (lower is better) Translates to: ISCRRMLSKTLTQESFYWGFNGF*DCELHR Trigger: CCTGTGGAGCTCACAGTCTCAGAAACCATTGAATCC...CCAATAAAATGACTCCTGGGTCAATGTCTTGCTCAGCATCCTCCTGCAGGAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | AGATCTTTCTCTGCAGTGTTCAGTTGTGGGTATCTGCATAAGTTCCCATCTCCTATCCACAGAGTCCATTaGCCAACACAGCAGGCTCAC | + |
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Preference number: 4 (lower is better) Translates to: RSFSAVFSCGYLHKFPSPIHRVH*PTQQAH Trigger: GTGAGCCTGCTGTGTTGGTCAATGGACTCTGTGGAT...AGGAGATGGGAACTTATGCAGATACCCACAACTGAACACTGCAGAGAAAGATCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | CTTTTGCAAGTATTTACCCATTCAGGATTCAGTATTTTCAGATCTTTCTCTGCATGGGCTGGCCTGGGCTaGAAGGCTGGGTGTCCAGTA | + |
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Preference number: 4 (lower is better) Translates to: LLQVFTHSGFSIFRSFSAWAGLG*KAGCPV Trigger: TACTGGACACCCAGCCTTTCAGCCCAGGCCAGCCCA...TGCAGAGAAAGATCTGAAAATACTGAATCCTGAATGGGTAAATACTTGCAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | ATTCCCTCACTTTATGGGCTCAGAAGAGTGTGGGTTCAGGAAACAAAGGCTCCCGAGATGAGTATTTGTTaGAGAGCACTAGGTACTGAC | + |
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Preference number: 4 (lower is better) Translates to: IPSLYGLRRVWVQETKAPEMSIC*RALGTD Trigger: GTCAGTACCTAGTGCTCTTCAACAAATACTCATCTC...GGGAGCCTTTGTTTCCTGAACCCACACTCTTCTGAGCCCATAAAGTGAGGGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | GGATTCAGTATTTTCAGATCTTTCTCTGCAGTGTTCAGTTGTGGGTATCTGCATGTGTCACAGAAGGGATaGAGAACCTGCCCTTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: GFSIFRSFSAVFSCGYLHVSQKG*RTCPCS Trigger: GGAACAAGGGCAGGTTCTTCATCCCTTCTGTGACAC...ATGCAGATACCCACAACTGAACACTGCAGAGAAAGATCTGAAAATACTGAATCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | GATCTTTCTCTGCAGTGTTCAGTTGTGGGTATCTGCATAAGTTCCCATCTCCTGAGATTCTCCATTGTGTaGTCCTTGTTCTCTGTGGGA | + |
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Preference number: 4 (lower is better) Translates to: DLSLQCSVVGICISSHLLRFSIV*SLFSVG Trigger: TCCCACAGAGAACAAGGATCACACAATGGAGAATCT...CAGGAGATGGGAACTTATGCAGATACCCACAACTGAACACTGCAGAGAAAGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR GCA 90 bp | GGATTCAGTATTTTCAGATCTTTCTCTGCAGTGTTCAGTTGTGGGTATCTGCATGTCTGCTGGCTAGAGTaGTGCATGATGTCAGCTCTC | + |
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Preference number: 4 (lower is better) Translates to: GFSIFRSFSAVFSCGYLHVCWLE*CMMSAL Trigger: GAGAGCTGACATCATGCAGCACTCTAGCCAGCAGAC...ATGCAGATACCCACAACTGAACACTGCAGAGAAAGATCTGAAAATACTGAATCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| 3UTR CAA 72 bp | AGGCTCCCAGTATGTGGAGGGACAGTAATTCATTTATaGAGGAAGCACCTCATTATGACACTTCCACTTCCC | + |
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Preference number: 4 (lower is better) Translates to: RLPVCGGTVIHL*RKHLIMTLPLP Trigger: GGGAAGTGGAAGTGTCATAATGAGGTGCTTCCTCAATAAATGAATTACTGTCCCTCCACATACTGGGAGCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | GTATGTGGAGGGACAGTAATTCATTTATTGAGGAAGCACCTCATTATGACACTTTCACATAGCCCAGTGTaGAGTTGGCCACAGAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: VCGGTVIHLLRKHLIMTLSHSPV*SWPQRS Trigger: GCTTCTCTGTGGCCAACTTCACACTGGGCTATGTGA...AAGTGTCATAATGAGGTGCTTCCTCAATAAATGAATTACTGTCCCTCCACATAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR CCA 90 bp | CCCAAACTTTTGCTTCCTAGACATTCTTACAACAGTTCCTCAATACCACAACAGAGAGGCGGTACTCATTaGCTCCAATTGTCTCCTCAC | + |
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Preference number: 4 (lower is better) Translates to: PKLLLPRHSYNSSSIPQQRGGTH*LQLSPH Trigger: GTGAGGAGACAATTGGAGCCAATGAGTACCGCCTCT...CTGTTGTGGTATTGAGGAACTGTTGTAAGAATGTCTAGGAAGCAAAAGTTTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | AGATCTTTCTCTGCAGTGTTCAGTTGTGGGTATCTGCATAAGTTCCCATCTCCTGGATTCACTTGGAGCTaGGAACACATATGGTCTATT | + |
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Preference number: 4 (lower is better) Translates to: RSFSAVFSCGYLHKFPSPGFTWS*EHIWSI Trigger: AATAGACCATATGTGTTCTCAGCTCCAAGTGAATCC...AGGAGATGGGAACTTATGCAGATACCCACAACTGAACACTGCAGAGAAAGATCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | AGATCTTTCTCTGCAGTGTTCAGTTGTGGGTATCTGCATAAGTTCCCATCTCCTCATATCTGTCATAGTTaGTGTCAGAGAAACACTGCA | + |
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Preference number: 4 (lower is better) Translates to: RSFSAVFSCGYLHKFPSPHICHS*CQRNTA Trigger: TGCAGTGTTTCTCTGACATCAACTATGACAGATATG...AGGAGATGGGAACTTATGCAGATACCCACAACTGAACACTGCAGAGAAAGATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | GTATGTGGAGGGACAGTAATTCATTTATTGAGGAAGCACCTCATTATGACACTTCCTCCTTGGACAGAATaGAAGTATCCACAGAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: VCGGTVIHLLRKHLIMTLPPWTE*KYPQSP Trigger: TGGACTCTGTGGATACTTTCATTCTGTCCAAGGAGG...AAGTGTCATAATGAGGTGCTTCCTCAATAAATGAATTACTGTCCCTCCACATAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | GGATTCAGTATTTTCAGATCTTTCTCTGCAGTGTTCAGTTGTGGGTATCTGCATCAAGAGGTAGAAAGATaGGTCTTGAGCTCCATAGCA | + |
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Preference number: 4 (lower is better) Translates to: GFSIFRSFSAVFSCGYLHQEVER*VLSSIA Trigger: TGCTATGGAGCTCAAGACTCATCTTTCTACCTCTTG...ATGCAGATACCCACAACTGAACACTGCAGAGAAAGATCTGAAAATACTGAATCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR TCA 90 bp | CTTTTGCAAGTATTTACCCATTCAGGATTCAGTATTTTCAGATCTTTCTCTGCACTGCTACAGTCAAAATaGACCTGTCATAGCTCGGCC | + |
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Preference number: 4 (lower is better) Translates to: LLQVFTHSGFSIFRSFSALLQSK*TCHSSA Trigger: GGCCGAGCTATGACAGGTTCATTTTGACTGTAGCAG...TGCAGAGAAAGATCTGAAAATACTGAATCCTGAATGGGTAAATACTTGCAAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS TCA 90 bp | CACTGCAGGGTGAGGGTCATTCCAGGGTCCAGGGTATGGCCTTGGTaGGTCAGCAGAGAGGGCTTCTTGGACAGCCCTGAGATGAGTATT | + |
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Preference number: 5 (lower is better) Translates to: HCRVRVIPGSRVWPW*VSREGFLDSPEMSI Trigger: AATACTCATCTCAGGGCTGTCCAAGAAGCCCTCTCTGCTGACTCACCAAGGCCATACCCTGGACCCTGGAATGACCCTCACCCTGCAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS-3UTR CAA 90 bp | GGGCTCAGAAGAGTGTGGGTTCAGGAAACAAAGGCTCCCAGTATGTGGAGGGACATGAAGAACCTGCCCTaGTTCCCAGGCTCCTGTAGG | + |
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Preference number: 5 (lower is better) Translates to: GLRRVWVQETKAPSMWRDMKNLP*FPGSCR Trigger: CCTACAGGAGCCTGGGAACAAGGGCAGGTTCTTCAT...GTCCCTCCACATACTGGGAGCCTTTGTTTCCTGAACCCACACTCTTCTGAGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS GCA 90 bp | AAGTTGGCCACAGAGAAGCCAGTGTCAGTCTGCTGGCTAGAGTGCTaGATGATGTCAGCTCTCCCCACCTTGTGCAGAGCATATCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: KLATEKPVSVCWLEC*MMSALPTLCRAYLS Trigger: TGACAGATATGCTCTGCACAAGGTGGGGAGAGCTGACATCATGCAGCACTCTAGCCAGCAGACTGACACTGGCTTCTCTGTGGCCAACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS TCA 90 bp | GCCTTTTGGGAGACCAGGTGGAGGATTCAATGGTTTCTGAGACTGTaGGCTCCACAGGGGCACTGGCAGATGACAAGAGGTAGAAAGATG | + |
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Preference number: 5 (lower is better) Translates to: AFWETRWRIQWFLRL*APQGHWQMTRGRKM Trigger: CATCTTTCTACCTCTTGTCATCTGCCAGTGCCCCTGTGGAGCTCACAGTCTCAGAAACCATTGAATCCTCCACCTGGTCTCCCAAAAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS CCA 90 bp | CCTGATGAGATTCTCCATTGTGTGATCCTTGTTCTCTGTGGGAATTaGTGGGATGGGCCTTTTGGGAGACCAGGTGGAGGATTCAATGGT | + |
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Preference number: 5 (lower is better) Translates to: PDEILHCVILVLCGN*WDGPFGRPGGGFNG Trigger: ACCATTGAATCCTCCACCTGGTCTCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACAAGGATCACACAATGGAGAATCTCATCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS CCA 90 bp | GATGAGATTCTCCATTGTGTGATCCTTGTTCTCTGTGGGAATTGGTaGGATGGGCCTTTTGGGAGACCAGGTGGAGGATTCAATGGTTTC | + |
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Preference number: 5 (lower is better) Translates to: DEILHCVILVLCGNW*DGPFGRPGGGFNGF Trigger: GAAACCATTGAATCCTCCACCTGGTCTCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACAAGGATCACACAATGGAGAATCTCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS GCA 90 bp | CCACCAGCTTCAGGGGGTCACTGTAGCCTGATGATTTATACTGGGTaGTGTAGGAACATTCATATTGACCTGCATTACTCAGGTCTACAT | + |
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Preference number: 5 (lower is better) Translates to: PPASGGHCSLMIYTG*CRNIHIDLHYSGLH Trigger: ATGTAGACCTGAGTAATGCAGGTCAATATGAATGTTCCTACAGCACCCAGTATAAATCATCAGGCTACAGTGACCCCCTGAAGCTGGTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS CCA 90 bp | GGCATTCTTGTAGTAACCATAACATCTGAATGTCCCTGTGTGGGTTaGGGTTGTGGGTCCTATAATAAACAGGGCTCGGTACTGTCTACT | + |
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Preference number: 5 (lower is better) Translates to: GILVVTITSECPCVG*GCGSYNKQGSVLST Trigger: AGTAGACAGTACCGAGCCCTGTTTATTATAGGACCCACAACCCCAACCCACACAGGGACATTCAGATGTTATGGTTACTACAAGAATGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS-3UTR CAA 90 bp | ATCTCCTGCAGGAGGATGCTGAGCAAGACATTGACCCAGGAGTCATTTTATTGGGTAGGAACATTCATATaGACCTGCATTACTCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: ISCRRMLSKTLTQESFYWVGTFI*TCITQV Trigger: GACCTGAGTAATGCAGGTCAATATGAATGTTCCTAC...CCAATAAAATGACTCCTGGGTCAATGTCTTGCTCAGCATCCTCCTGCAGGAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS-3UTR CAA 90 bp | CCCAAACTTTTGCTTCCTAGACATTCTTACAACAGTTCCTCAATACCACAACAGTCAGCTCTCCCCACCTaGTGCAGAGCATATCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: PKLLLPRHSYNSSSIPQQSALPT*CRAYLS Trigger: TGACAGATATGCTCTGCACAAGGTGGGGAGAGCTGA...CTGTTGTGGTATTGAGGAACTGTTGTAAGAATGTCTAGGAAGCAAAAGTTTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS TCA 90 bp | CAGGGCTCGGTACTGTCTACTAGAAGATATATGCTCTGTGTCCAGTaGGCTGGTGAATTTCTTATCTTCCTTGGTGAGAATGAATTTATC | + |
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Preference number: 5 (lower is better) Translates to: QGSVLSTRRYMLCVQ*AGEFLIFLGENEFI Trigger: GATAAATTCATTCTCACCAAGGAAGATAAGAAATTCACCAGCTCACTGGACACAGAGCATATATCTTCTAGTAGACAGTACCGAGCCCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS-3UTR CAA 90 bp | GGATTCAGTATTTTCAGATCTTTCTCTGCAGTGTTCAGTTGTGGGTATCTGCATTACTCAGGTCTACATTaGAGAATGAGAATTCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: GFSIFRSFSAVFSCGYLHYSGLH*RMRIQP Trigger: AGGCTGAATTCTCATTCTCAAATGTAGACCTGAGTA...ATGCAGATACCCACAACTGAACACTGCAGAGAAAGATCTGAAAATACTGAATCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS CAA 72 bp | CAGGGTGAGGGTCATTCCAGGGTCCAGGGTATGGCCTaGGTGAGTCAGCAGAGAGGGCTTCTTGGACAGCCC | + |
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Preference number: 6 (lower is better) Translates to: QGEGHSRVQGMA*VSQQRGLLGQP Trigger: GGGCTGTCCAAGAAGCCCTCTCTGCTGACTCACCAAGGCCATACCCTGGACCCTGGAATGACCCTCACCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS TCA 72 bp | GTGAGGGTCATTCCAGGGTCCAGGGTATGGCCTTGGTaGGTCAGCAGAGAGGGCTTCTTGGACAGCCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: VRVIPGSRVWPW*VSREGFLDSPE Trigger: CTCAGGGCTGTCCAAGAAGCCCTCTCTGCTGACTCACCAAGGCCATACCCTGGACCCTGGAATGACCCTCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS GCA 72 bp | GCCACAGAGAAGCCAGTGTCAGTCTGCTGGCTAGAGTaGTGCATGATGTCAGCTCTCCCCACCTTGTGCAGA | + |
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Preference number: 6 (lower is better) Translates to: ATEKPVSVCWLE*CMMSALPTLCR Trigger: TCTGCACAAGGTGGGGAGAGCTGACATCATGCAGCACTCTAGCCAGCAGACTGACACTGGCTTCTCTGTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS CCA 72 bp | TCTGAGGATAGGCTTAGGGAGGGACCCTGTCAGCACTaGGATCCAGAGGCTCAGAGTCAGTCCAAGACAGAG | + |
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Preference number: 6 (lower is better) Translates to: SEDRLREGPCQH*DPEAQSQSKTE Trigger: CTCTGTCTTGGACTGACTCTGAGCCTCTGGATCCCAGTGCTGACAGGGTCCCTCCCTAAGCCTATCCTCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS CCA 72 bp | GAAGGTCACCTTAGTCCTCCTGGAGACCACAGAGTCTaGCTGTACTCTGAGGATAGGCTTAGGGAGGGACCC | + |
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Preference number: 6 (lower is better) Translates to: EGHLSPPGDHRV*LYSEDRLREGP Trigger: GGGTCCCTCCCTAAGCCTATCCTCAGAGTACAGCCAGACTCTGTGGTCTCCAGGAGGACTAAGGTGACCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS CCA 72 bp | CTGAAGTTACCACTGGGCTGGCCTGGGCTGAAAGGCTaGGTGTCCAGTAGTCTTCTGTCACCACCAGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: LKLPLGWPGLKG*VSSSLLSPPAS Trigger: TGAAGCTGGTGGTGACAGAAGACTACTGGACACCCAGCCTTTCAGCCCAGGCCAGCCCAGTGGTAACTTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS GCA 72 bp | ACAGAGAAGCCAGTGTCAGTCTGCTGGCTAGAGTGCTaGATGATGTCAGCTCTCCCCACCTTGTGCAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: TEKPVSVCWLEC*MMSALPTLCRA Trigger: TGCTCTGCACAAGGTGGGGAGAGCTGACATCATGCAGCACTCTAGCCAGCAGACTGACACTGGCTTCTCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS TCA 72 bp | GAGACCAGGTGGAGGATTCAATGGTTTCTGAGACTGTaGGCTCCACAGGGGCACTGGCAGATGACAAGAGGT | + |
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Preference number: 6 (lower is better) Translates to: ETRWRIQWFLRL*APQGHWQMTRG Trigger: ACCTCTTGTCATCTGCCAGTGCCCCTGTGGAGCTCACAGTCTCAGAAACCATTGAATCCTCCACCTGGTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS TCA 72 bp | CCATTGTGTGATCCTTGTTCTCTGTGGCTGAGACTGTaGGCTCCACAGGGGCACTGGCAGATGACAAGAGGT | + |
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Preference number: 6 (lower is better) Translates to: PLCDPCSLWLRL*APQGHWQMTRG Trigger: ACCTCTTGTCATCTGCCAGTGCCCCTGTGGAGCTCACAGTCTCAGCCACAGAGAACAAGGATCACACAATGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119469.2 |
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| CDS CAA 72 bp | TGTTGTTGTGTCACAGAAGGGATGAAGAACCTGCCCTaGTTCCCAGGCTCCTGTAGGGTCTGTGTGCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: CCCVTEGMKNLP*FPGSCRVCVLC Trigger: ACAGAGCACACAGACCCTACAGGAGCCTGGGAACAAGGGCAGGTTCTTCATCCCTTCTGTGACACAACAACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS CAA 72 bp | GATTCTCCATTGTGTGATCCTTGTTCTCTGTGGGAATaGGTGGGATGGGCCTTTTGGGAGACCAGGTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: DSPLCDPCSLWE*VGWAFWETRWR Trigger: CCTCCACCTGGTCTCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACAAGGATCACACAATGGAGAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS CCA 72 bp | CCTTGTTCTCTGTGGGAATTGGTGGGATGGGCCTTTTaGGAGACCAGGTGGAGGATTCAATGGTTTCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: PCSLWELVGWAF*ETRWRIQWFLR Trigger: TCTCAGAAACCATTGAATCCTCCACCTGGTCTCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS CAA 72 bp | TCCTTGTTCTCTGTGGGAATTGGTGGGATGGGCCTTTaGGGAGACCAGGTGGAGGATTCAATGGTTTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: SLFSVGIGGMGL*GDQVEDSMVSE Trigger: CTCAGAAACCATTGAATCCTCCACCTGGTCTCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACAAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108615.10 |
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| CDS TCA 72 bp | TCCATGAGAACTTCTGTGGTCCTGCTACAGTCAAAATaGACCTGTCATAGCTCGGCCAGGACTCACACTGGA | + |
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Preference number: 6 (lower is better) Translates to: SMRTSVVLLQSK*TCHSSARTHTG Trigger: TCCAGTGTGAGTCCTGGCCGAGCTATGACAGGTTCATTTTGACTGTAGCAGGACCACAGAAGTTCTCATGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS CCA 72 bp | GTAGTAACCATAACATCTGAATGTCCCTGTGTGGGTTaGGGTTGTGGGTCCTATAATAAACAGGGCTCGGTA | + |
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Preference number: 6 (lower is better) Translates to: VVTITSECPCVG*GCGSYNKQGSV Trigger: TACCGAGCCCTGTTTATTATAGGACCCACAACCCCAACCCACACAGGGACATTCAGATGTTATGGTTACTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS TCA 72 bp | TTCCTTGGTGAGAATGAATTTATCGTAGTGAAAGTCTaGGGCACAGTGGAGTGTCATGTTCCCTCCTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: FLGENEFIVVKV*GTVECHVPSCC Trigger: ACAGCAGGAGGGAACATGACACTCCACTGTGCCTCAGACTTTCACTACGATAAATTCATTCTCACCAAGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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| CDS TCA 72 bp | GTACTGTCTACTAGAAGATATATGCTCTGTGTCCAGTaGGCTGGTGAATTTCTTATCTTCCTTGGTGAGAAT | + |
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Preference number: 6 (lower is better) Translates to: VLSTRRYMLCVQ*AGEFLIFLGEN Trigger: ATTCTCACCAAGGAAGATAAGAAATTCACCAGCTCACTGGACACAGAGCATATATCTTCTAGTAGACAGTAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108615.10 ENSMUST00000119469.2 |
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