Pregenerated sensors for PIRA13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074419Ensembl transcript IDs: ENSMUST00000094911.5, ENSMUST00000108619.8, ENSMUST00000108620.8, ENSMUST00000153846.8, ENSMUST00000189095.7
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TGGCTGTACTCTGAGGATAGGCTTAGGGAGGGACCCTGTCAGCACTaGGATCCAGAGGCTCAGAGTGAGTCCAAGACAGAGCCGGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: WLYSEDRLREGPCQH*DPEAQSESKTEPGC Trigger: ACAGCCCGGCTCTGTCTTGGACTCACTCTGAGCCTCTGGATCCCAGTGCTGACAGGGTCCCTCCCTAAGCCTATCCTCAGAGTACAGCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS TCA 90 bp | ATTTTAGTCGCAGGGGTTGCTGGGCTGATCCCTCCTTGGACAGAATaGAAGTCTCCACAGGGTCCATTGACCAACACAGCAGGCTCACGG | + |
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Preference number: 5 (lower is better) Translates to: ILVAGVAGLIPPWTE*KSPQGPLTNTAGSR Trigger: CCGTGAGCCTGCTGTGTTGGTCAATGGACCCTGTGGAGACTTTCATTCTGTCCAAGGAGGGATCAGCCCAGCAACCCCTGCGACTAAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS TCA 90 bp | AGGACCACGACTGCCATCCCCATCCTGATCAGATTCTCTGTTGTGTaGTCCTGGTTCTCTGTGGCTGAGACTGTGAGCTCCACAGGGGAA | + |
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Preference number: 5 (lower is better) Translates to: RTTTAIPILIRFSVV*SWFSVAETVSSTGE Trigger: TTCCCCTGTGGAGCTCACAGTCTCAGCCACAGAGAACCAGGATCACACAACAGAGAATCTGATCAGGATGGGGATGGCAGTCGTGGTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000108619.8 ENSMUST00000108620.8 |
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| CDS CCA 90 bp | TTCACACAAGAAGGTCACCTTAGTCCACCTGGAGACCACAGAGTCTaGCTGTACTCTGAGGATAGGCTTAGGGAGGGACCCTGTCAGCAC | + |
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Preference number: 5 (lower is better) Translates to: FTQEGHLSPPGDHRV*LYSEDRLREGPCQH Trigger: GTGCTGACAGGGTCCCTCCCTAAGCCTATCCTCAGAGTACAGCCAGACTCTGTGGTCTCCAGGTGGACTAAGGTGACCTTCTTGTGTGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS TCA 90 bp | AGGACCACGACTGCCATCCCCATCCTGATCAGATTCTCTGTTGTGTaGTCCTGGTTCTCTGTGGGAATTGGTGGGATGGGCCTTTTGGGA | + |
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Preference number: 5 (lower is better) Translates to: RTTTAIPILIRFSVV*SWFSVGIGGMGLLG Trigger: TCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACCAGGATCACACAACAGAGAATCTGATCAGGATGGGGATGGCAGTCGTGGTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153846.8 |
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| CDS GCA 90 bp | CCACCAGCTCCAGGAGGTCACTGTAGCCTGATGATTTATACTGGGTaGTGTAGGAACATTCATATTGACCTGCATTACTCAGGTCTACAT | + |
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Preference number: 5 (lower is better) Translates to: PPAPGGHCSLMIYTG*CRNIHIDLHYSGLH Trigger: ATGTAGACCTGAGTAATGCAGGTCAATATGAATGTTCCTACAGCACCCAGTATAAATCATCAGGCTACAGTGACCTCCTGGAGCTGGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS TCA 90 bp | CAGGGCTTGGTACTGTCTACTAGAAGATATATAAACTGTGTCCAGTaGGTTGGTGAATTTCTTATCTTCCTTCATGAGAATGAATTTATC | + |
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Preference number: 5 (lower is better) Translates to: QGLVLSTRRYINCVQ*VGEFLIFLHENEFI Trigger: GATAAATTCATTCTCATGAAGGAAGATAAGAAATTCACCAACTCACTGGACACAGTTTATATATCTTCTAGTAGACAGTACCAAGCCCTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS CAA 72 bp | CAGGGTGAGGGTCATTCCAGGGTCCAGGATATGGCCTaGGTGAGTCAGCAGAGAGGGCTTCTTGGACAGCCC | + |
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Preference number: 6 (lower is better) Translates to: QGEGHSRVQDMA*VSQQRGLLGQP Trigger: GGGCTGTCCAAGAAGCCCTCTCTGCTGACTCACCAAGGCCATATCCTGGACCCTGGAATGACCCTCACCCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108619.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS CCA 72 bp | CTGAAGTTACCACTGGGCTGGCCTGGGCTGAAAGGCTaGGTGTCCAGTAGTCTTCTGTCACCACCAGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: LKLPLGWPGLKG*VSSSLLSPPAP Trigger: TGGAGCTGGTGGTGACAGAAGACTACTGGACACCCAGCCTTTCAGCCCAGGCCAGCCCAGTGGTAACTTCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS CCA 72 bp | TCTGAGGATAGGCTTAGGGAGGGACCCTGTCAGCACTaGGATCCAGAGGCTCAGAGTGAGTCCAAGACAGAG | + |
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Preference number: 6 (lower is better) Translates to: SEDRLREGPCQH*DPEAQSESKTE Trigger: CTCTGTCTTGGACTCACTCTGAGCCTCTGGATCCCAGTGCTGACAGGGTCCCTCCCTAAGCCTATCCTCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS CCA 72 bp | GAAGGTCACCTTAGTCCACCTGGAGACCACAGAGTCTaGCTGTACTCTGAGGATAGGCTTAGGGAGGGACCC | + |
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Preference number: 6 (lower is better) Translates to: EGHLSPPGDHRV*LYSEDRLREGP Trigger: GGGTCCCTCCCTAAGCCTATCCTCAGAGTACAGCCAGACTCTGTGGTCTCCAGGTGGACTAAGGTGACCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS CCA 72 bp | TGTAGGTGCCTGAGAGATGGGAGGTCACAGCACTCATaGAGAATTCTGCCTGGGACTGCTGATCATGGGACT | + |
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Preference number: 6 (lower is better) Translates to: CRCLRDGRSQHS*RILPGTADHGT Trigger: AGTCCCATGATCAGCAGTCCCAGGCAGAATTCTCCATGAGTGCTGTGACCTCCCATCTCTCAGGCACCTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS CCA 72 bp | CCTGGTTCTCTGTGGGAATTGGTGGGATGGGCCTTTTaGGAGACCAGGTGGAGGATTCAATGGTTCCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: PGSLWELVGWAF*ETRWRIQWFLR Trigger: TCTCAGGAACCATTGAATCCTCCACCTGGTCTCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153846.8 |
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| CDS CCA 72 bp | CTCTGTTGTGTGATCCTGGTTCTCTGTGGGAATTGGTaGGATGGGCCTTTTGGGAGACCAGGTGGAGGATTC | + |
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Preference number: 6 (lower is better) Translates to: LCCVILVLCGNW*DGPFGRPGGGF Trigger: GAATCCTCCACCTGGTCTCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACCAGGATCACACAACAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153846.8 |
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| CDS CAA 72 bp | TCCTGGTTCTCTGTGGGAATTGGTGGGATGGGCCTTTaGGGAGACCAGGTGGAGGATTCAATGGTTCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: SWFSVGIGGMGL*GDQVEDSMVPE Trigger: CTCAGGAACCATTGAATCCTCCACCTGGTCTCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACCAGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153846.8 |
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| CDS CAA 72 bp | GATTCTCTGTTGTGTGATCCTGGTTCTCTGTGGGAATaGGTGGGATGGGCCTTTTGGGAGACCAGGTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: DSLLCDPGSLWE*VGWAFWETRWR Trigger: CCTCCACCTGGTCTCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACCAGGATCACACAACAGAGAATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153846.8 |
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| CDS TCA 72 bp | ACTGCCATCCCCATCCTGATCAGATTCTCTGTTGTGTaGTCCTGGTTCTCTGTGGCTGAGACTGTGAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: TAIPILIRFSVV*SWFSVAETVSS Trigger: GGAGCTCACAGTCTCAGCCACAGAGAACCAGGATCACACAACAGAGAATCTGATCAGGATGGGGATGGCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108619.8 ENSMUST00000108620.8 |
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| CDS TCA 72 bp | ACTGCCATCCCCATCCTGATCAGATTCTCTGTTGTGTaGTCCTGGTTCTCTGTGGGAATTGGTGGGATGGGC | + |
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Preference number: 6 (lower is better) Translates to: TAIPILIRFSVV*SWFSVGIGGMG Trigger: GCCCATCCCACCAATTCCCACAGAGAACCAGGATCACACAACAGAGAATCTGATCAGGATGGGGATGGCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153846.8 |
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| CDS CCA 72 bp | TTGTGTGATCCTGGTTCTCTGTGGGAATTGGTGGGATaGGCCTTTTGGGAGACCAGGTGGAGGATTCAATGG | + |
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Preference number: 6 (lower is better) Translates to: LCDPGSLWELVG*AFWETRWRIQW Trigger: CCATTGAATCCTCCACCTGGTCTCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACCAGGATCACACAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153846.8 |
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| CDS CCA 72 bp | ATTCTCTGTTGTGTGATCCTGGTTCTCTGTGGGAATTaGTGGGATGGGCCTTTTGGGAGACCAGGTGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: ILCCVILVLCGN*WDGPFGRPGGG Trigger: TCCTCCACCTGGTCTCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACCAGGATCACACAACAGAGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153846.8 |
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| CDS CAA 72 bp | GATTTTAGTCGCAGGGGTTGCTGGGCTGATCCCTCCTaGGACAGAATGAAAGTCTCCACAGGGTCCATTGAC | + |
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Preference number: 6 (lower is better) Translates to: DFSRRGCWADPS*DRMKVSTGSID Trigger: GTCAATGGACCCTGTGGAGACTTTCATTCTGTCCAAGGAGGGATCAGCCCAGCAACCCCTGCGACTAAAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS TCA 72 bp | CTGCTGTCACCACAGTGCTGGGCAGTGCTGACAGTCTaGGTTCATAGTGTTCATAGATTCCTGTCACCACCA | + |
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Preference number: 6 (lower is better) Translates to: LLSPQCWAVLTV*VHSVHRFLSPP Trigger: TGGTGGTGACAGGAATCTATGAACACTATGAACTCAGACTGTCAGCACTGCCCAGCACTGTGGTGACAGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS TCA 72 bp | GTTTCCTCCTGCTGTCACCACAGTGCTGGGCAGTGCTaGCAGTCTGAGTTCATAGTGTTCATAGATTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: VSSCCHHSAGQC*QSEFIVFIDSC Trigger: ACAGGAATCTATGAACACTATGAACTCAGACTGTCAGCACTGCCCAGCACTGTGGTGACAGCAGGAGGAAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS CAA 72 bp | TGTTGTTGTGTCACAGAAGGGATGAAGAACTTGCCCTaGTTCCCAGGCTGCTGTAGGGTCTGTGTGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: CCCVTEGMKNLP*FPGCCRVCVLS Trigger: AGAAAGCACACAGACCCTACAGCAGCCTGGGAACAAGGGCAAGTTCTTCATCCCTTCTGTGACACAACAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS TCA 72 bp | TTCCTTCATGAGAATGAATTTATCATAGTGACTGTGTaGGGCACAGTGGAGTGTCATGTTTCCTCCTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: FLHENEFIIVTV*GTVECHVSSCC Trigger: ACAGCAGGAGGAAACATGACACTCCACTGTGCCTCACACAGTCACTATGATAAATTCATTCTCATGAAGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS CAA 72 bp | GTGGGTTGGGGTTGTGGGTCCTATAATAAACAGGGCTaGGTACTGTCTACTAGAAGATATATAAACTGTGTC | + |
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Preference number: 6 (lower is better) Translates to: VGWGCGSYNKQG*VLSTRRYINCV Trigger: GACACAGTTTATATATCTTCTAGTAGACAGTACCAAGCCCTGTTTATTATAGGACCCACAACCCCAACCCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS CAA 72 bp | AACATTCATATTGACCTGCATTACTCAGGTCTACATTaGAGAATGAGAATTCAGCCTTGTTTGCTGGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: NIHIDLHYSGLH*RMRIQPCLLAS Trigger: AGAAGCCAGCAAACAAGGCTGAATTCTCATTCTCAAATGTAGACCTGAGTAATGCAGGTCAATATGAATGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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| CDS CAA 72 bp | TCAGGTCTACATTTGAGAATGAGAATTCAGCCTTGTTaGCTGGCTTCTGTTTGTTCTTTGTTACGGTTTTAT | + |
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Preference number: 6 (lower is better) Translates to: SGLHLRMRIQPC*LASVCSLLRFY Trigger: ATAAAACCGTAACAAAGAACAAACAGAAGCCAGCAAACAAGGCTGAATTCTCATTCTCAAATGTAGACCTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000094911.5 ENSMUST00000108619.8 ENSMUST00000108620.8 ENSMUST00000153846.8 ENSMUST00000189095.7 |
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