RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PIRA12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074417

Ensembl transcript IDs: ENSMUST00000070639.8

Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CACTGCAGGGTGAGGGTCATTCCAGGGTCCAGGATATGGCCTTGGTaGGTCAGCAGAGAGGGCTTCTTGGACAGCCCTGAGATGAGTATT +
Preference number: 5 (lower is better)
Translates to: HCRVRVIPGSRIWPW*VSREGFLDSPEMSI
Trigger: AATACTCATCTCAGGGCTGTCCAAGAAGCCCTCTCTGCTGACTCACCAAGGCCATATCCTGGACCCTGGAATGACCCTCACCCTGCAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS TCA 90 bp GCCTTTTGGGAGGCCAGGTGGAGGATTCAATGGTTCCTGAGACTGTaGGCTCCACAGGGGCACTGGCAGATGACAAGAGGTAGAAAGATG +
Preference number: 5 (lower is better)
Translates to: AFWEARWRIQWFLRL*APQGHWQMTRGRKM
Trigger: CATCTTTCTACCTCTTGTCATCTGCCAGTGCCCCTGTGGAGCTCACAGTCTCAGGAACCATTGAATCCTCCACCTGGCCTCCCAAAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS CCA 90 bp CTCACACAAGAAGGTCACCTTAGTCCTTCTGGAGACCACAGAGTGTaGCTGTACTCTGAGGATAGGCTTAGGGAGGGACCCTGTCAGCAC +
Preference number: 5 (lower is better)
Translates to: LTQEGHLSPSGDHRV*LYSEDRLREGPCQH
Trigger: GTGCTGACAGGGTCCCTCCCTAAGCCTATCCTCAGAGTACAGCCACACTCTGTGGTCTCCAGAAGGACTAAGGTGACCTTCTTGTGTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS TCA 90 bp GAGGTGACCACACATATGGTCTGTTCCTGTCATAACTGTAACATCTaGATATCCATCGCTGGTTGGGGGTCACAGGGCCCACAGAGAACA +
Preference number: 5 (lower is better)
Translates to: EVTTHMVCSCHNCNI*ISIAGWGSQGPQRT
Trigger: TGTTCTCTGTGGGCCCTGTGACCCCCAACCAGCGATGGATATTCAGATGTTACAGTTATGACAGGAACAGACCATATGTGTGGTCACCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS GCA 90 bp AACAGGGCGTGGTACTTCCTTGTAGAGTTGTTATATTGTGAGTCTTaGATCCATGAGAGCTTCTGTGGTCCTTCTACAGTCAGAATGAAC +
Preference number: 5 (lower is better)
Translates to: NRAWYFLVELLYCES*IHESFCGPSTVRMN
Trigger: GTTCATTCTGACTGTAGAAGGACCACAGAAGCTCTCATGGATGCAAGACTCACAATATAACAACTCTACAAGGAAGTACCACGCCCTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS CCA 72 bp TCTGAGGATAGGCTTAGGGAGGGACCCTGTCAGCACTaGGATCCAGAGGCTCAGAGTCAGTCCAAGGCAGAG +
Preference number: 6 (lower is better)
Translates to: SEDRLREGPCQH*DPEAQSQSKAE
Trigger: CTCTGCCTTGGACTGACTCTGAGCCTCTGGATCCCAGTGCTGACAGGGTCCCTCCCTAAGCCTATCCTCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS TCA 72 bp GAGGCCAGGTGGAGGATTCAATGGTTCCTGAGACTGTaGGCTCCACAGGGGCACTGGCAGATGACAAGAGGT +
Preference number: 6 (lower is better)
Translates to: EARWRIQWFLRL*APQGHWQMTRG
Trigger: ACCTCTTGTCATCTGCCAGTGCCCCTGTGGAGCTCACAGTCTCAGGAACCATTGAATCCTCCACCTGGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS CCA 72 bp GAAGGTCACCTTAGTCCTTCTGGAGACCACAGAGTGTaGCTGTACTCTGAGGATAGGCTTAGGGAGGGACCC +
Preference number: 6 (lower is better)
Translates to: EGHLSPSGDHRV*LYSEDRLREGP
Trigger: GGGTCCCTCCCTAAGCCTATCCTCAGAGTACAGCCACACTCTGTGGTCTCCAGAAGGACTAAGGTGACCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS CCA 72 bp CCTGGTTCTCTGTGGGAATTGGTGGGATGGGCCTTTTaGGAGGCCAGGTGGAGGATTCAATGGTTCCTGAGA +
Preference number: 6 (lower is better)
Translates to: PGSLWELVGWAF*EARWRIQWFLR
Trigger: TCTCAGGAACCATTGAATCCTCCACCTGGCCTCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS CCA 72 bp CTCCATTGTGTGATCCTGGTTCTCTGTGGGAATTGGTaGGATGGGCCTTTTGGGAGGCCAGGTGGAGGATTC +
Preference number: 6 (lower is better)
Translates to: LHCVILVLCGNW*DGPFGRPGGGF
Trigger: GAATCCTCCACCTGGCCTCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACCAGGATCACACAATGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS CAA 72 bp GATTCTCCATTGTGTGATCCTGGTTCTCTGTGGGAATaGGTGGGATGGGCCTTTTGGGAGGCCAGGTGGAGG +
Preference number: 6 (lower is better)
Translates to: DSPLCDPGSLWE*VGWAFWEARWR
Trigger: CCTCCACCTGGCCTCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACCAGGATCACACAATGGAGAATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS CCA 72 bp TTGTGTGATCCTGGTTCTCTGTGGGAATTGGTGGGATaGGCCTTTTGGGAGGCCAGGTGGAGGATTCAATGG +
Preference number: 6 (lower is better)
Translates to: LCDPGSLWELVG*AFWEARWRIQW
Trigger: CCATTGAATCCTCCACCTGGCCTCCCAAAAGGCCCATCCCACCAATTCCCACAGAGAACCAGGATCACACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS CAA 72 bp TGTTGTTGTGTCACAGAAGGGATGAAGAACTTGCCCTaGTTCCCAGGCTGCTGTAGGGTCTGTGTGCTCTGT +
Preference number: 6 (lower is better)
Translates to: CCCVTEGMKNLP*FPGCCRVCVLC
Trigger: ACAGAGCACACAGACCCTACAGCAGCCTGGGAACAAGGGCAAGTTCTTCATCCCTTCTGTGACACAACAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS CAA 90 bp GTCACAGGGCCCACAGAGAACAGGGCGTGGTACTTCCTTGTAGAGTaGTTATATTGTGAGTCTTGCATCCATGAGAGCTTCTGTGGTCCT +
Preference number: 6 (lower is better)
Translates to: VTGPTENRAWYFLVE*LYCESCIHESFCGP
Trigger: AGGACCACAGAAGCTCTCATGGATGCAAGACTCACAATATAACAACTCTACAAGGAAGTACCACGCCCTGTTCTCTGTGGGCCCTGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS TCA 72 bp TCCATGAGAGCTTCTGTGGTCCTTCTACAGTCAGAATaGACCTGTGATTGTTGTGCCAGGACTCACACTGGA +
Preference number: 6 (lower is better)
Translates to: SMRASVVLLQSE*TCDCCARTHTG
Trigger: TCCAGTGTGAGTCCTGGCACAACAATCACAGGTTCATTCTGACTGTAGAAGGACCACAGAAGCTCTCATGGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS TCA 72 bp ACACATATGGTCTGTTCCTGTCATAACTGTAACATCTaGATATCCATCGCTGGTTGGGGGTCACAGGGCCCA +
Preference number: 6 (lower is better)
Translates to: THMVCSCHNCNI*ISIAGWGSQGP
Trigger: TGGGCCCTGTGACCCCCAACCAGCGATGGATATTCAGATGTTACAGTTATGACAGGAACAGACCATATGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS CAA 72 bp CCCACAGAGAACAGGGCGTGGTACTTCCTTGTAGAGTaGTTATATTGTGAGTCTTGCATCCATGAGAGCTTC +
Preference number: 6 (lower is better)
Translates to: PTENRAWYFLVE*LYCESCIHESF
Trigger: GAAGCTCTCATGGATGCAAGACTCACAATATAACAACTCTACAAGGAAGTACCACGCCCTGTTCTCTGTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS GCA 72 bp TGGTACTTCCTTGTAGAGTTGTTATATTGTGAGTCTTaGATCCATGAGAGCTTCTGTGGTCCTTCTACAGTC +
Preference number: 6 (lower is better)
Translates to: WYFLVELLYCES*IHESFCGPSTV
Trigger: GACTGTAGAAGGACCACAGAAGCTCTCATGGATGCAAGACTCACAATATAACAACTCTACAAGGAAGTACCA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS CCA 72 bp TATATAGCTTTCCATCTTTATAGAGGTGGTACTCATTaGCTCCAATTGTCTCCTCACACAAGAAGGTCACCT +
Preference number: 6 (lower is better)
Translates to: YIAFHLYRGGTH*LQLSPHTRRSP
Trigger: AGGTGACCTTCTTGTGTGAGGAGACAATTGGAGCCAATGAGTACCACCTCTATAAAGATGGAAAGCTATATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS CAA 72 bp AACATCGATATTGACCTGCATTACTCAGGTCTACATTaGAGAGTGAGAATTCAGCCTTGTTTGCTGGCTTCT +
Preference number: 6 (lower is better)
Translates to: NIDIDLHYSGLH*RVRIQPCLLAS
Trigger: AGAAGCCAGCAAACAAGGCTGAATTCTCACTCTCAAATGTAGACCTGAGTAATGCAGGTCAATATCGATGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS CAA 72 bp TTACTCAGGTCTACATTTGAGAGTGAGAATTCAGCCTaGTTTGCTGGCTTCTGTTTGTTCTTTGTTACGGTT +
Preference number: 6 (lower is better)
Translates to: LLRSTFESENSA*FAGFCLFFVTV
Trigger: AACCGTAACAAAGAACAAACAGAAGCCAGCAAACAAGGCTGAATTCTCACTCTCAAATGTAGACCTGAGTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8
CDS CAA 90 bp CTGCATTACTCAGGTCTACATTTGAGAGTGAGAATTCAGCCTTGTTaGCTGGCTTCTGTTTGTTCTTTGTTACGGTTTTATATAGCTTTC +
Preference number: 6 (lower is better)
Translates to: LHYSGLHLRVRIQPC*LASVCSLLRFYIAF
Trigger: GAAAGCTATATAAAACCGTAACAAAGAACAAACAGAAGCCAGCAAACAAGGCTGAATTCTCACTCTCAAATGTAGACCTGAGTAATGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070639.8