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Pregenerated sensors for PIRA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000081665

Ensembl transcript IDs: ENSMUST00000118068.3

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CACTGCAGGGTGAGGGTCATTCCAGGGTCCATGGTATGGCCTTGGTaGGTCAGCAGAGAGGGCTTCTTGGACAGCCCTGAGATGAGTATT +
Preference number: 5 (lower is better)
Translates to: HCRVRVIPGSMVWPW*VSREGFLDSPEMSI
Trigger: AATACTCATCTCAGGGCTGTCCAAGAAGCCCTCTCTGCTGACTCACCAAGGCCATACCATGGACCCTGGAATGACCCTCACCCTGCAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118068.3
CDS CCA 90 bp CTCACAAAAGAAAGTCACCTTAGTCCTCCTGGAGACCACAGAGTCTaGCTGTACTCTGAGGATAGGCTTAGGGAGGGACCCTGTCAGCAC +
Preference number: 5 (lower is better)
Translates to: LTKESHLSPPGDHRV*LYSEDRLREGPCQH
Trigger: GTGCTGACAGGGTCCCTCCCTAAGCCTATCCTCAGAGTACAGCCAGACTCTGTGGTCTCCAGGAGGACTAAGGTGACTTTCTTTTGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118068.3
CDS CAA 72 bp CAGGGTGAGGGTCATTCCAGGGTCCATGGTATGGCCTaGGTGAGTCAGCAGAGAGGGCTTCTTGGACAGCCC +
Preference number: 6 (lower is better)
Translates to: QGEGHSRVHGMA*VSQQRGLLGQP
Trigger: GGGCTGTCCAAGAAGCCCTCTCTGCTGACTCACCAAGGCCATACCATGGACCCTGGAATGACCCTCACCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118068.3
CDS TCA 72 bp GTGAGGGTCATTCCAGGGTCCATGGTATGGCCTTGGTaGGTCAGCAGAGAGGGCTTCTTGGACAGCCCTGAG +
Preference number: 6 (lower is better)
Translates to: VRVIPGSMVWPW*VSREGFLDSPE
Trigger: CTCAGGGCTGTCCAAGAAGCCCTCTCTGCTGACTCACCAAGGCCATACCATGGACCCTGGAATGACCCTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118068.3
CDS CCA 72 bp GAAAGTCACCTTAGTCCTCCTGGAGACCACAGAGTCTaGCTGTACTCTGAGGATAGGCTTAGGGAGGGACCC +
Preference number: 6 (lower is better)
Translates to: ESHLSPPGDHRV*LYSEDRLREGP
Trigger: GGGTCCCTCCCTAAGCCTATCCTCAGAGTACAGCCAGACTCTGTGGTCTCCAGGAGGACTAAGGTGACTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118068.3
CDS TCA 72 bp GCAGGGGTTGCTGGGCTGATCCCTCCTTGGACAGAATaGAAGTATCCACAGGGTCCATTGACCAACACAGCA +
Preference number: 6 (lower is better)
Translates to: AGVAGLIPPWTE*KYPQGPLTNTA
Trigger: TGCTGTGTTGGTCAATGGACCCTGTGGATACTTTCATTCTGTCCAAGGAGGGATCAGCCCAGCAACCCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118068.3
CDS CAA 90 bp TGGGACTTCGATTTTAGTCGCAGGGGTTGCTGGGCTGATCCCTCCTaGGACAGAATGAAAGTATCCACAGGGTCCATTGACCAACACAGC +
Preference number: 6 (lower is better)
Translates to: WDFDFSRRGCWADPS*DRMKVSTGSIDQHS
Trigger: GCTGTGTTGGTCAATGGACCCTGTGGATACTTTCATTCTGTCCAAGGAGGGATCAGCCCAGCAACCCCTGCGACTAAAATCGAAGTCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118068.3
CDS CAA 72 bp GATTTTAGTCGCAGGGGTTGCTGGGCTGATCCCTCCTaGGACAGAATGAAAGTATCCACAGGGTCCATTGAC +
Preference number: 6 (lower is better)
Translates to: DFSRRGCWADPS*DRMKVSTGSID
Trigger: GTCAATGGACCCTGTGGATACTTTCATTCTGTCCAAGGAGGGATCAGCCCAGCAACCCCTGCGACTAAAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118068.3
CDS GCA 72 bp CCAGGAGGTCACTGTAGCCTGATGATTCATCCTGGGTaGTGTAGGAACATCGATATTGACCTGCATTTCTCA +
Preference number: 6 (lower is better)
Translates to: PGGHCSLMIHPG*CRNIDIDLHFS
Trigger: TGAGAAATGCAGGTCAATATCGATGTTCCTACAGCACCCAGGATGAATCATCAGGCTACAGTGACCTCCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118068.3
CDS CAA 72 bp AACATCGATATTGACCTGCATTTCTCAGGTCTACATTaGAGAATGAGAATTCAGCCTTGTTTGCTGGCTTCT +
Preference number: 6 (lower is better)
Translates to: NIDIDLHFSGLH*RMRIQPCLLAS
Trigger: AGAAGCCAGCAAACAAGGCTGAATTCTCATTCTCAAATGTAGACCTGAGAAATGCAGGTCAATATCGATGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118068.3
CDS CCA 72 bp TATATAGCTTTCCATCTTTATAGAGGTGGTACTCATTaGCTCCAATTGTCTCCTCACAAAAGAAAGTCACCT +
Preference number: 6 (lower is better)
Translates to: YIAFHLYRGGTH*LQLSPHKRKSP
Trigger: AGGTGACTTTCTTTTGTGAGGAGACAATTGGAGCCAATGAGTACCACCTCTATAAAGATGGAAAGCTATATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118068.3