Pregenerated sensors for PIR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031379

Ensembl transcript IDs: ENSMUST00000033749.9, ENSMUST00000145412.8

Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GGTCTGCCAATGCTTCTGCGCACACGTGCTCCTACCCCCTCTGACTaGTCCCGGCTGAGCACTGAGAGAGTAACCTTTTTAGAGGATGCC	+
Preference number: 5 (lower is better) Translates to: GLPMLLRTRAPTPSD*SRLSTERVTFLEDA Trigger: GGCATCCTCTAAAAAGGTTACTCTCTCAGTGCTCAGCCGGGAGCAGTCAGAGGGGGTAGGAGCACGTGTGCGCAGAAGCATTGGCAGACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS TCA 90 bp	GCGTCTCAAATTCACCCACAGCTGCAAGCCATGAGCTGGCTCCTCTaGGCAGGGCATCTCAGCATGCAGAATGCCTCGTCCTGCAGTCAT	+
Preference number: 5 (lower is better) Translates to: ASQIHPQLQAMSWLL*AGHLSMQNASSCSH Trigger: ATGACTGCAGGACGAGGCATTCTGCATGCTGAGATGCCCTGCTCAGAGGAGCCAGCTCATGGCTTGCAGCTGTGGGTGAATTTGAGACGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS TCA 90 bp	ACCATCTTTTCTGAGCGTCTCAAATTCACCCACAGCTGCAAGCCATaGGCTGGCTCCTCTGAGCAGGGCATCTCAGCATGCAGAATGCCT	+
Preference number: 5 (lower is better) Translates to: TIFSERLKFTHSCKP*AGSSEQGISACRMP Trigger: AGGCATTCTGCATGCTGAGATGCCCTGCTCAGAGGAGCCAGCTCATGGCTTGCAGCTGTGGGTGAATTTGAGACGCTCAGAAAAGATGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS TCA 90 bp	CTCTTCACTTTTCAGTTCCTGGTACTGAGGCGCCACCATCTTTTCTaGGCGTCTCAAATTCACCCACAGCTGCAAGCCATGAGCTGGCTC	+
Preference number: 5 (lower is better) Translates to: LFTFQFLVLRRHHLF*ASQIHPQLQAMSWL Trigger: GAGCCAGCTCATGGCTTGCAGCTGTGGGTGAATTTGAGACGCTCAGAAAAGATGGTGGCGCCTCAGTACCAGGAACTGAAAAGTGAAGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS TCA 90 bp	TCTTTGGTGGGTTTCGGGATCTCTTCACTTTTCAGTTCCTGGTACTaGGGCGCCACCATCTTTTCTGAGCGTCTCAAATTCACCCACAGC	+
Preference number: 5 (lower is better) Translates to: SLVGFGISSLFSSWY*GATIFSERLKFTHS Trigger: GCTGTGGGTGAATTTGAGACGCTCAGAAAAGATGGTGGCGCCTCAGTACCAGGAACTGAAAAGTGAAGAGATCCCGAAACCCACCAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS TCA 90 bp	TGCGAGTGTAAACCTTCGACTTTATTCCCAAGGCTTCTCCTGAAATaGCAGCAACTGTCACACCATCTTTGGTGGGTTTCGGGATCTCTT	+
Preference number: 5 (lower is better) Translates to: CECKPSTLFPRLLLK*QQLSHHLWWVSGSL Trigger: AAGAGATCCCGAAACCCACCAAAGATGGTGTGACAGTTGCTGTCATTTCAGGAGAAGCCTTGGGAATAAAGTCGAAGGTTTACACTCGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS CCA 90 bp	GCTGCCCCCTTCCAGAAGATAAGATACTGTTTCAAATCCTCGGTGTaGATGATCAGGAAATCCTCCCGGCTTTCCTCCTTTAAATTCATC	+
Preference number: 5 (lower is better) Translates to: AAPFQKIRYCFKSSV*MIRKSSRLSSFKFI Trigger: GATGAATTTAAAGGAGGAAAGCCGGGAGGATTTCCTGATCATCCACACCGAGGATTTGAAACAGTATCTTATCTTCTGGAAGGGGGCAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS CCA 90 bp	TTCCAACTGGACAGCGTCACCTTCTCCAAGGACTGCTGTGTGATGTaGTTCTATCTTTTGTTGAGCATCATCAGGCCCAATATATACATC	+
Preference number: 5 (lower is better) Translates to: FQLDSVTFSKDCCVM*FYLLLSIIRPNIYI Trigger: GATGTATATATTGGGCCTGATGATGCTCAACAAAAGATAGAACCACATCACACAGCAGTCCTTGGAGAAGGTGACGCTGTCCAGTTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS TCA 72 bp	TCTGAGCGTCTCAAATTCACCCACAGCTGCAAGCCATaGGCTGGCTCCTCTGAGCAGGGCATCTCAGCATGC	+
Preference number: 6 (lower is better) Translates to: SERLKFTHSCKP*AGSSEQGISAC Trigger: GCATGCTGAGATGCCCTGCTCAGAGGAGCCAGCTCATGGCTTGCAGCTGTGGGTGAATTTGAGACGCTCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS GCA 72 bp	GATCCAGATTTTTCAACTCGGGTCTGCCAATGCTTCTaGGCACACGTGCTCCTACCCCCTCTGACTGCTCCC	+
Preference number: 6 (lower is better) Translates to: DPDFSTRVCQCF*AHVLLPPLTAP Trigger: GGGAGCAGTCAGAGGGGGTAGGAGCACGTGTGCGCAGAAGCATTGGCAGACCCGAGTTGAAAAATCTGGATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS GCA 72 bp	ATGCTTCTGCGCACACGTGCTCCTACCCCCTCTGACTaGTCCCGGCTGAGCACTGAGAGAGTAACCTTTTTA	+
Preference number: 6 (lower is better) Translates to: MLLRTRAPTPSD*SRLSTERVTFL Trigger: TAAAAAGGTTACTCTCTCAGTGCTCAGCCGGGAGCAGTCAGAGGGGGTAGGAGCACGTGTGCGCAGAAGCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS TCA 72 bp	TTTCAGTTCCTGGTACTGAGGCGCCACCATCTTTTCTaGGCGTCTCAAATTCACCCACAGCTGCAAGCCATG	+
Preference number: 6 (lower is better) Translates to: FQFLVLRRHHLF*ASQIHPQLQAM Trigger: CATGGCTTGCAGCTGTGGGTGAATTTGAGACGCTCAGAAAAGATGGTGGCGCCTCAGTACCAGGAACTGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS TCA 72 bp	GGTTTCGGGATCTCTTCACTTTTCAGTTCCTGGTACTaGGGCGCCACCATCTTTTCTGAGCGTCTCAAATTC	+
Preference number: 6 (lower is better) Translates to: GFGISSLFSSWY*GATIFSERLKF Trigger: GAATTTGAGACGCTCAGAAAAGATGGTGGCGCCTCAGTACCAGGAACTGAAAAGTGAAGAGATCCCGAAACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS CCA 72 bp	GACAGCGTCACCTTCTCCAAGGACTGCTGTGTGATGTaGTTCTATCTTTTGTTGAGCATCATCAGGCCCAAT	+
Preference number: 6 (lower is better) Translates to: DSVTFSKDCCVM*FYLLLSIIRPN Trigger: ATTGGGCCTGATGATGCTCAACAAAAGATAGAACCACATCACACAGCAGTCCTTGGAGAAGGTGACGCTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS CAA 90 bp	AGCGTCACCTTCTCCAAGGACTGCTGTGTGATGTGGTTCTATCTTTaGTTGAGCATCATCAGGCCCAATATATACATCTCCAGAGATGGT	+
Preference number: 6 (lower is better) Translates to: SVTFSKDCCVMWFYL*LSIIRPNIYISRDG Trigger: ACCATCTCTGGAGATGTATATATTGGGCCTGATGATGCTCAACAAAAGATAGAACCACATCACACAGCAGTCCTTGGAGAAGGTGACGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS TCA 72 bp	AAACCTTCGACTTTATTCCCAAGGCTTCTCCTGAAATaGCAGCAACTGTCACACCATCTTTGGTGGGTTTCG	+
Preference number: 6 (lower is better) Translates to: KPSTLFPRLLLK*QQLSHHLWWVS Trigger: CGAAACCCACCAAAGATGGTGTGACAGTTGCTGTCATTTCAGGAGAAGCCTTGGGAATAAAGTCGAAGGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS GCA 72 bp	ATGAAGCTTGTCCACCCTTTAGGAATAGGCTGGGAATaGTTTGCTCCTTGGTCCAACTTGAAGTCCAGATAT	+
Preference number: 6 (lower is better) Translates to: MKLVHPLGIGWE*FAPWSNLKSRY Trigger: ATATCTGGACTTCAAGTTGGACCAAGGAGCAAAGCATTCCCAGCCTATTCCTAAAGGGTGGACAAGCTTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS GCA 72 bp	ATTTTCCAACTGGACAGCGTCACCTTCTCCAAGGACTaGTGTGTGATGTGGTTCTATCTTTTGTTGAGCATC	+
Preference number: 6 (lower is better) Translates to: IFQLDSVTFSKD*CVMWFYLLLSI Trigger: GATGCTCAACAAAAGATAGAACCACATCACACAGCAGTCCTTGGAGAAGGTGACGCTGTCCAGTTGGAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS GCA 72 bp	TACCAACATGTCCACAAAAGTCTTCATGGGCCATGCTaGCCCCTTCCAGAAGATAAGATACTGTTTCAAATC	+
Preference number: 6 (lower is better) Translates to: YQHVHKSLHGPC*PLPEDKILFQI Trigger: GATTTGAAACAGTATCTTATCTTCTGGAAGGGGGCAGCATGGCCCATGAAGACTTTTGTGGACATGTTGGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS CCA 72 bp	TTCCAGAAGATAAGATACTGTTTCAAATCCTCGGTGTaGATGATCAGGAAATCCTCCCGGCTTTCCTCCTTT	+
Preference number: 6 (lower is better) Translates to: FQKIRYCFKSSV*MIRKSSRLSSF Trigger: AAAGGAGGAAAGCCGGGAGGATTTCCTGATCATCCACACCGAGGATTTGAAACAGTATCTTATCTTCTGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS CAA 90 bp	GTCACCTTCTCCAAGGACTGCTGTGTGATGTGGTTCTATCTTTTGTaGAGCATCATCAGGCCCAATATATACATCTCCAGAGATGGTATA	+
Preference number: 6 (lower is better) Translates to: VTFSKDCCVMWFYLL*SIIRPNIYISRDGI Trigger: TATACCATCTCTGGAGATGTATATATTGGGCCTGATGATGCTCAACAAAAGATAGAACCACATCACACAGCAGTCCTTGGAGAAGGTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8
CDS CAA 72 bp	TCCAAGGACTGCTGTGTGATGTGGTTCTATCTTTTGTaGAGCATCATCAGGCCCAATATATACATCTCCAGA	+
Preference number: 6 (lower is better) Translates to: SKDCCVMWFYLL*SIIRPNIYISR Trigger: TCTGGAGATGTATATATTGGGCCTGATGATGCTCAACAAAAGATAGAACCACATCACACAGCAGTCCTTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033749.9 ENSMUST00000145412.8

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