Pregenerated sensors for PIPOX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017453Ensembl transcript IDs: ENSMUST00000017597.5
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AGATTTAGTCAAAGCAATCGCAAGTTCACCCAGTGTCCCAGCAAAAAGAAATTTCTAGGAGGGCTTTCCTaGCCAGGAGAGAGTCAGCTG | + |
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Preference number: 2 (lower is better) Translates to: RFSQSNRKFTQCPSKKKFLGGLS*PGESQL Trigger: CAGCTGACTCTCTCCTGGGCAGGAAAGCCCTCCTAG...AAATTTCTTTTTGCTGGGACACTGGGTGAACTTGCGATTGCTTTGACTAAATCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| 3UTR-3UTR TCA 90 bp | AGATTTAGTCAAAGCAATCGCAAGTTCACCCAGTGTCCCAGCAAAAAGAAATTTTATGGGAGATTCCATTaGATCAGGAGGAGAAGAAAC | + |
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Preference number: 2 (lower is better) Translates to: RFSQSNRKFTQCPSKKKFYGRFH*IRRRRN Trigger: GTTTCTTCTCCTCCTGATTCAATGGAATCTCCCATA...AAATTTCTTTTTGCTGGGACACTGGGTGAACTTGCGATTGCTTTGACTAAATCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| 3UTR CCA 72 bp | TCAGGAGGAGAAGAAACTCGTCAAGGCCACATCTCCTaGAAATCTCCCCTAGGAGGGCTTTCCTGCCCAGGA | + |
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Preference number: 3 (lower is better) Translates to: SGGEETRQGHIS*KSPLGGLSCPG Trigger: TCCTGGGCAGGAAAGCCCTCCTAGGGGAGATTTCCAGGAGATGTGGCCTTGACGAGTTTCTTCTCCTCCTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR GCA 90 bp | TCAAGGCCACATCTCCTGGAAATCTCCCCTAGGAGGGCTTTCCTGCCCAGGAGACCCCGGGTACTCGGATaGTGGCAGTCCATAGATGTG | + |
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Preference number: 4 (lower is better) Translates to: SRPHLLEISPRRAFLPRRPRVLG*WQSIDV Trigger: CACATCTATGGACTGCCAGCATCCGAGTACCCGGGG...TCTCCTGGGCAGGAAAGCCCTCCTAGGGGAGATTTCCAGGAGATGTGGCCTTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR TCA 90 bp | ATCAGGAGGAGAAGAAACTCGTCAAGGCCACATCTCCTGGAAATCTCCCCTAGGTATGCTGGAGGGCTCTaGGGGCCTTGTCTGCATAGA | + |
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Preference number: 4 (lower is better) Translates to: IRRRRNSSRPHLLEISPRYAGGL*GPCLHR Trigger: TCTATGCAGACAAGGCCCTCAGAGCCCTCCAGCATA...CCTAGGGGAGATTTCCAGGAGATGTGGCCTTGACGAGTTTCTTCTCCTCCTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR TCA 90 bp | GAAACTCGTCAAGGCCACATCTCCTGGAAATCTCCCCTAGGAGGGCTTTCCTGCAACGTCTTGGATGTCTaGGAAGGTTTTGGGGCAGTC | + |
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Preference number: 4 (lower is better) Translates to: ETRQGHISWKSPLGGLSCNVLDV*EGFGAV Trigger: GACTGCCCCAAAACCTTCTCAGACATCCAAGACGTT...GCAGGAAAGCCCTCCTAGGGGAGATTTCCAGGAGATGTGGCCTTGACGAGTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR CCA 90 bp | GGTGATAGAGGCTGGCTTAAGTTTTTGGCAAAGAAACCCAAAGGCACTAGTGGTGCGTTCCATGATGTCTaGCTCAGCCCGCAGGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: GDRGWLKFLAKKPKGTSGAFHDV*LSPQAW Trigger: CCAGGCCTGCGGGCTGAGCCAGACATCATGGAACGC...ACCACTAGTGCCTTTGGGTTTCTTTGCCAAAAACTTAAGCCAGCCTCTATCACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR TCA 90 bp | ATCAGGAGGAGAAGAAACTCGTCAAGGCCACATCTCCTGGAAATCTCCCCTAGGCCACTTCTCCCCTGGTaGACCGAATGTTTGGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: IRRRRNSSRPHLLEISPRPLLPW*TECLES Trigger: GCTTTCCAAACATTCGGTTCACCAGGGGAGAAGTGG...CCTAGGGGAGATTTCCAGGAGATGTGGCCTTGACGAGTTTCTTCTCCTCCTGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR TCA 90 bp | GATAGAGGCTGGCTTAAGTTTTTGGCAAAGAAACCCAAAGGCACTAGTGGTTTAGCGGCTCTGTCCATGTaGGCTTCCTCGGGAATGGGG | + |
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Preference number: 4 (lower is better) Translates to: DRGWLKFLAKKPKGTSGLAALSM*ASSGMG Trigger: CCCCATTCCCGAGGAAGCTCACATGGACAGAGCCGC...TAAACCACTAGTGCCTTTGGGTTTCTTTGCCAAAAACTTAAGCCAGCCTCTATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR CCA 90 bp | TTATGGGAGATTCCATTGAATCAGGAGGAGAAGAAACTCGTCAAGGCCACATCTGAGTGTTTGGCCAGGTaGTACGCGGTAAAGCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: LWEIPLNQEEKKLVKATSECLAR*YAVKQP Trigger: GGGCTGCTTTACCGCGTACCACCTGGCCAAACACTC...AGATGTGGCCTTGACGAGTTTCTTCTCCTCCTGATTCAATGGAATCTCCCATAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR CCA 90 bp | TTATGGGAGATTCCATTGAATCAGGAGGAGAAGAAACTCGTCAAGGCCACATCTCGGGTACTCGGATGCTaGCAGTCCATAGATGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: LWEIPLNQEEKKLVKATSRVLGC*QSIDVV Trigger: CACCACATCTATGGACTGCCAGCATCCGAGTACCCG...AGATGTGGCCTTGACGAGTTTCTTCTCCTCCTGATTCAATGGAATCTCCCATAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR CCA 90 bp | GAGGCTGGCTTAAGTTTTTGGCAAAGAAACCCAAAGGCACTAGTGGTTTATAAAGCAGTCCCGCTCCTCTaGGTCCACATTGTCACCATG | + |
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Preference number: 4 (lower is better) Translates to: EAGLSFWQRNPKALVVYKAVPLL*VHIVTM Trigger: CATGGTGACAATGTGGACCCAGAGGAGCGGGACTGC...TTTATAAACCACTAGTGCCTTTGGGTTTCTTTGCCAAAAACTTAAGCCAGCCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR GCA 90 bp | GATAGAGGCTGGCTTAAGTTTTTGGCAAAGAAACCCAAAGGCACTAGTGGTTTATCTGAGGGCCTTGTCTaGATAGAGGACACCTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: DRGWLKFLAKKPKGTSGLSEGLV*IEDTSS Trigger: ACTGGAGGTGTCCTCTATGCAGACAAGGCCCTCAGA...TAAACCACTAGTGCCTTTGGGTTTCTTTGCCAAAAACTTAAGCCAGCCTCTATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR GCA 90 bp | GAGGCTGGCTTAAGTTTTTGGCAAAGAAACCCAAAGGCACTAGTGGTTTATAAATCAATCCCCAGAGGATaGAGAAGCCGGTTGGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: EAGLSFWQRNPKALVVYKSIPRG*RSRLVQ Trigger: CTGGACCAACCGGCTTCTGCATCCTCTGGGGATTGA...TTTATAAACCACTAGTGCCTTTGGGTTTCTTTGCCAAAAACTTAAGCCAGCCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR TCA 90 bp | TTATGGGAGATTCCATTGAATCAGGAGGAGAAGAAACTCGTCAAGGCCACATCTACAGTGCCTCCTAGCTaGCAAATTATATGCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: LWEIPLNQEEKKLVKATSTVPPS*QIICWR Trigger: CCTCCAGCATATAATTTGTCAGCTAGGAGGCACTGT...AGATGTGGCCTTGACGAGTTTCTTCTCCTCCTGATTCAATGGAATCTCCCATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR TCA 90 bp | GGTGATAGAGGCTGGCTTAAGTTTTTGGCAAAGAAACCCAAAGGCACTAGTGGTAGAATCCAGCGCCGATaGCAATGTTGTCATACTTTG | + |
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Preference number: 4 (lower is better) Translates to: GDRGWLKFLAKKPKGTSGRIQRR*QCCHTL Trigger: CAAAGTATGACAACATTGTCATCGGCGCTGGATTCT...ACCACTAGTGCCTTTGGGTTTCTTTGCCAAAAACTTAAGCCAGCCTCTATCACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR GCA 90 bp | AGTCAAAGCAATCGCAAGTTCACCCAGTGTCCCAGCAAAAAGAAATTTAAAGGAGCAGCCCTGGATGCCTaGTCCAATCACAATAGCATC | + |
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Preference number: 4 (lower is better) Translates to: SQSNRKFTQCPSKKKFKGAALDA*SNHNSI Trigger: GATGCTATTGTGATTGGAGCAGGCATCCAGGGCTGC...TCCTTTAAATTTCTTTTTGCTGGGACACTGGGTGAACTTGCGATTGCTTTGACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR GCA 90 bp | AGATTTAGTCAAAGCAATCGCAAGTTCACCCAGTGTCCCAGCAAAAAGAAATTTTGGGGAAGAAAGAACTaGTCCAGCAGGAGGACGCTC | + |
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Preference number: 4 (lower is better) Translates to: RFSQSNRKFTQCPSKKKFWGRKN*SSRRTL Trigger: GAGCGTCCTCCTGCTGGAGCAGTTCTTTCTTCCCCA...AAATTTCTTTTTGCTGGGACACTGGGTGAACTTGCGATTGCTTTGACTAAATCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR GCA 90 bp | GGTGATAGAGGCTGGCTTAAGTTTTTGGCAAAGAAACCCAAAGGCACTAGTGGTCTCCATCACACACAGTaGCTCCTAGCTGACAAATTA | + |
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Preference number: 4 (lower is better) Translates to: GDRGWLKFLAKKPKGTSGLHHTQ*LLADKL Trigger: TAATTTGTCAGCTAGGAGGCACTGTGTGTGATGGAG...ACCACTAGTGCCTTTGGGTTTCTTTGCCAAAAACTTAAGCCAGCCTCTATCACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR CCA 90 bp | TGTTCAATCATTTGGTGTTTATGGGAGATTCCATTGAATCAGGAGGAGAAGAAAGCAGGAGGACGCTCTTaGAGTGTTTGGCCAGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: CSIIWCLWEIPLNQEEKKAGGRS*SVWPGG Trigger: ACCACCTGGCCAAACACTCCAAGAGCGTCCTCCTGC...TTTCTTCTCCTCCTGATTCAATGGAATCTCCCATAAACACCAAATGATTGAACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR CCA 90 bp | GAGGCTGGCTTAAGTTTTTGGCAAAGAAACCCAAAGGCACTAGTGGTTTATAAAGAGCTTCCTCGGGAATaGGGAAGAAAGAACTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: EAGLSFWQRNPKALVVYKELPRE*GRKNCS Trigger: GGAGCAGTTCTTTCTTCCCCATTCCCGAGGAAGCTC...TTTATAAACCACTAGTGCCTTTGGGTTTCTTTGCCAAAAACTTAAGCCAGCCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR TCA 90 bp | TGGGAGATTCCATTGAATCAGGAGGAGAAGAAACTCGTCAAGGCCACATCTCCTCTGGTAAATGATCTCTaGCAAAGTGGCATAGAATTT | + |
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Preference number: 4 (lower is better) Translates to: WEIPLNQEEKKLVKATSPLVNDL*QSGIEF Trigger: AAATTCTATGCCACTTTGTCAGAGATCATTTACCAG...AGGAGATGTGGCCTTGACGAGTTTCTTCTCCTCCTGATTCAATGGAATCTCCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR TCA 90 bp | AATATAATCTGTTTTACATTCCCCCTGAGCAGATTTAGTCAAAGCAATCGCAAGCGCAGGCCTGGTAAATaGTCTCTGACAAAGTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: NIICFTFPLSRFSQSNRKRRPGK*SLTKWH Trigger: ATGCCACTTTGTCAGAGATCATTTACCAGGCCTGCG...CTTGCGATTGCTTTGACTAAATCTGCTCAGGGGGAATGTAAAACAGATTATATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR GCA 90 bp | TTATGGGAGATTCCATTGAATCAGGAGGAGAAGAAACTCGTCAAGGCCACATCTCAATCAAGAATAAAGTaGTCATCAGGAGTATTCGTG | + |
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Preference number: 4 (lower is better) Translates to: LWEIPLNQEEKKLVKATSQSRIK*SSGVFV Trigger: CACGAATACTCCTGATGAGCACTTTATTCTTGATTG...AGATGTGGCCTTGACGAGTTTCTTCTCCTCCTGATTCAATGGAATCTCCCATAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR CCA 90 bp | AATATAATCTGTTTTACATTCCCCCTGAGCAGATTTAGTCAAAGCAATCGCAAGCTAGACAGGGTGGCCTaGATTGTCTTTAATCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: NIICFTFPLSRFSQSNRKLDRVA*IVFNPG Trigger: TCCAGGATTAAAGACAATCCAGGCCACCCTGTCTAG...CTTGCGATTGCTTTGACTAAATCTGCTCAGGGGGAATGTAAAACAGATTATATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR GCA 90 bp | GATAGAGGCTGGCTTAAGTTTTTGGCAAAGAAACCCAAAGGCACTAGTGGTTTAATGTTTGGAAAGCGTTaGTTTAAATCCACTGACGAA | + |
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Preference number: 4 (lower is better) Translates to: DRGWLKFLAKKPKGTSGLMFGKR*FKSTDE Trigger: TTCGTCAGTGGATTTAAAGCAACGCTTTCCAAACAT...TAAACCACTAGTGCCTTTGGGTTTCTTTGCCAAAAACTTAAGCCAGCCTCTATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR GCA 90 bp | GAGGCTGGCTTAAGTTTTTGGCAAAGAAACCCAAAGGCACTAGTGGTTTATAAAATGGGGGTAATTTCATaGTTAGCTCATAGAGGATCT | + |
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Preference number: 4 (lower is better) Translates to: EAGLSFWQRNPKALVVYKMGVIS*LAHRGS Trigger: AGATCCTCTATGAGCTAAGCATGAAATTACCCCCAT...TTTATAAACCACTAGTGCCTTTGGGTTTCTTTGCCAAAAACTTAAGCCAGCCTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR CCA 90 bp | AGATTTAGTCAAAGCAATCGCAAGTTCACCCAGTGTCCCAGCAAAAAGAAATTTCGTGTAGAAGTCCTCTaGATAAGCCTTTCTGATTAT | + |
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Preference number: 4 (lower is better) Translates to: RFSQSNRKFTQCPSKKKFRVEVL*ISLSDY Trigger: ATAATCAGAAAGGCTTATCCAGAGGACTTCTACACG...AAATTTCTTTTTGCTGGGACACTGGGTGAACTTGCGATTGCTTTGACTAAATCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS GCA 90 bp | ACATTGATCCTAAGGGTCTGGAGAGGCAACTCAATCCCCAGAGGATaGAGAAGCCGGTTGGTCCAGGGACCAGCAGTGATGACCAAGCTG | + |
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Preference number: 5 (lower is better) Translates to: TLILRVWRGNSIPRG*RSRLVQGPAVMTKL Trigger: CAGCTTGGTCATCACTGCTGGTCCCTGGACCAACCGGCTTCTGCATCCTCTGGGGATTGAGTTGCCTCTCCAGACCCTTAGGATCAATGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CCA 90 bp | AAGAACTGCTCCAGCAGGAGGACGCTCTTGGAGTGTTTGGCCAGGTaGTACGCGGTAAAGCAGCCCTGGATGCCTGCTCCAATCACAATA | + |
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Preference number: 5 (lower is better) Translates to: KNCSSRRTLLECLAR*YAVKQPWMPAPITI Trigger: TATTGTGATTGGAGCAGGCATCCAGGGCTGCTTTACCGCGTACCACCTGGCCAAACACTCCAAGAGCGTCCTCCTGCTGGAGCAGTTCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS GCA 90 bp | GGAGTGTTTGGCCAGGTGGTACGCGGTAAAGCAGCCCTGGATGCCTaGTCCAATCACAATAGCATCCCAGAAATCTGTCTGAGCAGCCAT | + |
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Preference number: 5 (lower is better) Translates to: GVFGQVVRGKAALDA*SNHNSIPEICLSSH Trigger: ATGGCTGCTCAGACAGATTTCTGGGATGCTATTGTGATTGGAGCAGGCATCCAGGGCTGCTTTACCGCGTACCACCTGGCCAAACACTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CCA 90 bp | GCCTTTCTGATTATGCGGCTCTGTCCATGTGAGCTTCCTCGGGAATaGGGAAGAAAGAACTGCTCCAGCAGGAGGACGCTCTTGGAGTGT | + |
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Preference number: 5 (lower is better) Translates to: AFLIMRLCPCELPRE*GRKNCSSRRTLLEC Trigger: ACACTCCAAGAGCGTCCTCCTGCTGGAGCAGTTCTTTCTTCCCCATTCCCGAGGAAGCTCACATGGACAGAGCCGCATAATCAGAAAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS TCA 90 bp | GAAGTCCTCTGGATAAGCCTTTCTGATTATGCGGCTCTGTCCATGTaGGCTTCCTCGGGAATGGGGAAGAAAGAACTGCTCCAGCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: EVLWISLSDYAALSM*ASSGMGKKELLQQE Trigger: CTCCTGCTGGAGCAGTTCTTTCTTCCCCATTCCCGAGGAAGCTCACATGGACAGAGCCGCATAATCAGAAAGGCTTATCCAGAGGACTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS TCA 90 bp | CACACACAGTGCCTCCTAGCTGACAAATTATATGCTGGAGGGCTCTaGGGGCCTTGTCTGCATAGAGGACACCTCCAGTCTTGTCCAAGA | + |
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Preference number: 5 (lower is better) Translates to: HTQCLLADKLYAGGL*GPCLHRGHLQSCPR Trigger: TCTTGGACAAGACTGGAGGTGTCCTCTATGCAGACAAGGCCCTCAGAGCCCTCCAGCATATAATTTGTCAGCTAGGAGGCACTGTGTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR CAA 90 bp | GATAGAGGCTGGCTTAAGTTTTTGGCAAAGAAACCCAAAGGCACTAGTGGTTTAGGATGCAGAAGCCGGTaGGTCCAGGGACCAGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: DRGWLKFLAKKPKGTSGLGCRSR*VQGPAV Trigger: CACTGCTGGTCCCTGGACCAACCGGCTTCTGCATCC...TAAACCACTAGTGCCTTTGGGTTTCTTTGCCAAAAACTTAAGCCAGCCTCTATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS TCA 90 bp | AGAGGACACCTCCAGTCTTGTCCAAGAGCCCCACTTCTCCCCTGGTaGACCGAATGTTTGGAAAGCGTTGCTTTAAATCCACTGACGAAA | + |
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Preference number: 5 (lower is better) Translates to: RGHLQSCPRAPLLPW*TECLESVALNPLTK Trigger: TTTCGTCAGTGGATTTAAAGCAACGCTTTCCAAACATTCGGTTCACCAGGGGAGAAGTGGGGCTCTTGGACAAGACTGGAGGTGTCCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CCA 90 bp | GACGAAAGATACTCATGGTCGATCCCTTGCCTAGACAGGGTGGCCTaGATTGTCTTTAATCCTGGATTTTCCTTCGTCCCCAGAAGTAAG | + |
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Preference number: 5 (lower is better) Translates to: DERYSWSIPCLDRVA*IVFNPGFSFVPRSK Trigger: CTTACTTCTGGGGACGAAGGAAAATCCAGGATTAAAGACAATCCAGGCCACCCTGTCTAGGCAAGGGATCGACCATGAGTATCTTTCGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS TCA 90 bp | ATTCCTTCATCATCATCGTGTAGAAGTCCTCTGGATAAGCCTTTCTaGTTATGCGGCTCTGTCCATGTGAGCTTCCTCGGGAATGGGGAA | + |
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Preference number: 5 (lower is better) Translates to: IPSSSSCRSPLDKPF*LCGSVHVSFLGNGE Trigger: TTCCCCATTCCCGAGGAAGCTCACATGGACAGAGCCGCATAATCAGAAAGGCTTATCCAGAGGACTTCTACACGATGATGATGAAGGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS GCA 90 bp | CGTTGCTTTAAATCCACTGACGAAAGATACTCATGGTCGATCCCTTaGCTAGACAGGGTGGCCTGGATTGTCTTTAATCCTGGATTTTCC | + |
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Preference number: 5 (lower is better) Translates to: RCFKSTDERYSWSIP*LDRVAWIVFNPGFS Trigger: GGAAAATCCAGGATTAAAGACAATCCAGGCCACCCTGTCTAGGCAAGGGATCGACCATGAGTATCTTTCGTCAGTGGATTTAAAGCAACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CCA 90 bp | TGTCCAGAGAATCCAGCGCCGATGACAATGTTGTCATACTTTGGGTaGCAATCAAGAATAAAGTGCTCATCAGGAGTATTCGTGTACATG | + |
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Preference number: 5 (lower is better) Translates to: CPENPAPMTMLSYFG*QSRIKCSSGVFVYM Trigger: CATGTACACGAATACTCCTGATGAGCACTTTATTCTTGATTGCCACCCAAAGTATGACAACATTGTCATCGGCGCTGGATTCTCTGGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CCA 90 bp | TCCATGTCCAGAGAATCCAGCGCCGATGACAATGTTGTCATACTTTaGGTGGCAATCAAGAATAAAGTGCTCATCAGGAGTATTCGTGTA | + |
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Preference number: 5 (lower is better) Translates to: SMSRESSADDNVVIL*VAIKNKVLIRSIRV Trigger: TACACGAATACTCCTGATGAGCACTTTATTCTTGATTGCCACCCAAAGTATGACAACATTGTCATCGGCGCTGGATTCTCTGGACATGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR CAA 90 bp | AATATAATCTGTTTTACATTCCCCCTGAGCAGATTTAGTCAAAGCAATCGCAAGATGTCTGAGAAGGTTTaGGGGCAGTCCCGCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: NIICFTFPLSRFSQSNRKMSEKV*GQSRSS Trigger: AGAGGAGCGGGACTGCCCCAAAACCTTCTCAGACAT...CTTGCGATTGCTTTGACTAAATCTGCTCAGGGGGAATGTAAAACAGATTATATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS GCA 90 bp | CCGATGACAATGTTGTCATACTTTGGGTGGCAATCAAGAATAAAGTaGTCATCAGGAGTATTCGTGTACATGCAGCGTTCCATGATGTCT | + |
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Preference number: 5 (lower is better) Translates to: PMTMLSYFGWQSRIK*SSGVFVYMQRSMMS Trigger: AGACATCATGGAACGCTGCATGTACACGAATACTCCTGATGAGCACTTTATTCTTGATTGCCACCCAAAGTATGACAACATTGTCATCGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS-3UTR CAA 90 bp | AGATTTAGTCAAAGCAATCGCAAGTTCACCCAGTGTCCCAGCAAAAAGAAATTTACAACAGGGGCCAACTaGAATCCATGTCCAGAGAAT | + |
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Preference number: 5 (lower is better) Translates to: RFSQSNRKFTQCPSKKKFTTGAN*NPCPEN Trigger: ATTCTCTGGACATGGATTCAAGTTGGCCCCTGTTGT...AAATTTCTTTTTGCTGGGACACTGGGTGAACTTGCGATTGCTTTGACTAAATCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CAA 90 bp | TGGGGAAGAAAGAACTGCTCCAGCAGGAGGACGCTCTTGGAGTGTTaGGCCAGGTGGTACGCGGTAAAGCAGCCCTGGATGCCTGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: WGRKNCSSRRTLLEC*ARWYAVKQPWMPAP Trigger: TGGAGCAGGCATCCAGGGCTGCTTTACCGCGTACCACCTGGCCAAACACTCCAAGAGCGTCCTCCTGCTGGAGCAGTTCTTTCTTCCCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CAA 90 bp | CCTCGGGAATGGGGAAGAAAGAACTGCTCCAGCAGGAGGACGCTCTaGGAGTGTTTGGCCAGGTGGTACGCGGTAAAGCAGCCCTGGATG | + |
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Preference number: 6 (lower is better) Translates to: PREWGRKNCSSRRTL*ECLARWYAVKQPWM Trigger: CATCCAGGGCTGCTTTACCGCGTACCACCTGGCCAAACACTCCAAGAGCGTCCTCCTGCTGGAGCAGTTCTTTCTTCCCCATTCCCGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS GCA 72 bp | CTAAGGGTCTGGAGAGGCAACTCAATCCCCAGAGGATaGAGAAGCCGGTTGGTCCAGGGACCAGCAGTGATG | + |
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Preference number: 6 (lower is better) Translates to: LRVWRGNSIPRG*RSRLVQGPAVM Trigger: CATCACTGCTGGTCCCTGGACCAACCGGCTTCTGCATCCTCTGGGGATTGAGTTGCCTCTCCAGACCCTTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CAA 72 bp | AAGAACTGCTCCAGCAGGAGGACGCTCTTGGAGTGTTaGGCCAGGTGGTACGCGGTAAAGCAGCCCTGGATG | + |
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Preference number: 6 (lower is better) Translates to: KNCSSRRTLLEC*ARWYAVKQPWM Trigger: CATCCAGGGCTGCTTTACCGCGTACCACCTGGCCAAACACTCCAAGAGCGTCCTCCTGCTGGAGCAGTTCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CAA 72 bp | TGGGGAAGAAAGAACTGCTCCAGCAGGAGGACGCTCTaGGAGTGTTTGGCCAGGTGGTACGCGGTAAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: WGRKNCSSRRTL*ECLARWYAVKQ Trigger: CTGCTTTACCGCGTACCACCTGGCCAAACACTCCAAGAGCGTCCTCCTGCTGGAGCAGTTCTTTCTTCCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CAA 72 bp | AGAGGCAACTCAATCCCCAGAGGATGCAGAAGCCGGTaGGTCCAGGGACCAGCAGTGATGACCAAGCTGTTG | + |
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Preference number: 6 (lower is better) Translates to: RGNSIPRGCRSR*VQGPAVMTKLL Trigger: CAACAGCTTGGTCATCACTGCTGGTCCCTGGACCAACCGGCTTCTGCATCCTCTGGGGATTGAGTTGCCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS GCA 72 bp | GGCCAGGTGGTACGCGGTAAAGCAGCCCTGGATGCCTaGTCCAATCACAATAGCATCCCAGAAATCTGTCTG | + |
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Preference number: 6 (lower is better) Translates to: GQVVRGKAALDA*SNHNSIPEICL Trigger: CAGACAGATTTCTGGGATGCTATTGTGATTGGAGCAGGCATCCAGGGCTGCTTTACCGCGTACCACCTGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS GCA 72 bp | GGATTTTCCTTCGTCCCCAGAAGTAAGAGCTCAGTCTaGCTGTGTAACTGGGTTCCGGCTTCACGCTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: GFSFVPRSKSSV*LCNWVPASRSS Trigger: GCTGGAGCGTGAAGCCGGAACCCAGTTACACAGGCAGACTGAGCTCTTACTTCTGGGGACGAAGGAAAATCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CCA 72 bp | ATTATGCGGCTCTGTCCATGTGAGCTTCCTCGGGAATaGGGAAGAAAGAACTGCTCCAGCAGGAGGACGCTC | + |
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Preference number: 6 (lower is better) Translates to: IMRLCPCELPRE*GRKNCSSRRTL Trigger: GAGCGTCCTCCTGCTGGAGCAGTTCTTTCTTCCCCATTCCCGAGGAAGCTCACATGGACAGAGCCGCATAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CAA 72 bp | GGTCCAGGGACCAGCAGTGATGACCAAGCTGTTGGCTaGGTAGCTCTTCAAGGTGGTTTTCACTGTGACGGG | + |
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Preference number: 6 (lower is better) Translates to: GPGTSSDDQAVG*VALQGGFHCDG Trigger: CCCGTCACAGTGAAAACCACCTTGAAGAGCTACCAAGCCAACAGCTTGGTCATCACTGCTGGTCCCTGGACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS TCA 72 bp | TGCCTCCTAGCTGACAAATTATATGCTGGAGGGCTCTaGGGGCCTTGTCTGCATAGAGGACACCTCCAGTCT | + |
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Preference number: 6 (lower is better) Translates to: CLLADKLYAGGL*GPCLHRGHLQS Trigger: AGACTGGAGGTGTCCTCTATGCAGACAAGGCCCTCAGAGCCCTCCAGCATATAATTTGTCAGCTAGGAGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS TCA 72 bp | GCTCATCAGGAGTATTCGTGTACATGCAGCGTTCCATaGTGTCTGGCTCAGCCCGCAGGCCTGGTAAATGAT | + |
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Preference number: 6 (lower is better) Translates to: AHQEYSCTCSVP*CLAQPAGLVND Trigger: ATCATTTACCAGGCCTGCGGGCTGAGCCAGACATCATGGAACGCTGCATGTACACGAATACTCCTGATGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CCA 72 bp | TACTCATGGTCGATCCCTTGCCTAGACAGGGTGGCCTaGATTGTCTTTAATCCTGGATTTTCCTTCGTCCCC | + |
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Preference number: 6 (lower is better) Translates to: YSWSIPCLDRVA*IVFNPGFSFVP Trigger: GGGGACGAAGGAAAATCCAGGATTAAAGACAATCCAGGCCACCCTGTCTAGGCAAGGGATCGACCATGAGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS TCA 72 bp | TGGATAAGCCTTTCTGATTATGCGGCTCTGTCCATGTaGGCTTCCTCGGGAATGGGGAAGAAAGAACTGCTC | + |
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Preference number: 6 (lower is better) Translates to: WISLSDYAALSM*ASSGMGKKELL Trigger: GAGCAGTTCTTTCTTCCCCATTCCCGAGGAAGCTCACATGGACAGAGCCGCATAATCAGAAAGGCTTATCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS TCA 72 bp | TCATCATCGTGTAGAAGTCCTCTGGATAAGCCTTTCTaGTTATGCGGCTCTGTCCATGTGAGCTTCCTCGGG | + |
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Preference number: 6 (lower is better) Translates to: SSSCRSPLDKPF*LCGSVHVSFLG Trigger: CCCGAGGAAGCTCACATGGACAGAGCCGCATAATCAGAAAGGCTTATCCAGAGGACTTCTACACGATGATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS GCA 72 bp | GAAACGGAGCCAAGTCATAGGATGGGGGTAATTTCATaGTTAGCTCATAGAGGATCTTCCCCACAACAGGGG | + |
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Preference number: 6 (lower is better) Translates to: ETEPSHRMGVIS*LAHRGSSPQQG Trigger: CCCCTGTTGTGGGGAAGATCCTCTATGAGCTAAGCATGAAATTACCCCCATCCTATGACTTGGCTCCGTTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS TCA 72 bp | TGTTGGCTTGGTAGCTCTTCAAGGTGGTTTTCACTGTaGCGGGTAGACCAGGTCTTATCTCCACTACCTTCT | + |
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Preference number: 6 (lower is better) Translates to: CWLGSSSRWFSL*RVDQVLSPLPS Trigger: AGAAGGTAGTGGAGATAAGACCTGGTCTACCCGTCACAGTGAAAACCACCTTGAAGAGCTACCAAGCCAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS GCA 72 bp | GTCTTATCTCCACTACCTTCTCTCCATCACACACAGTaGCTCCTAGCTGACAAATTATATGCTGGAGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: VLSPLPSLHHTQ*LLADKLYAGGL Trigger: GAGCCCTCCAGCATATAATTTGTCAGCTAGGAGGCACTGTGTGTGATGGAGAGAAGGTAGTGGAGATAAGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS GCA 72 bp | AAATCCACTGACGAAAGATACTCATGGTCGATCCCTTaGCTAGACAGGGTGGCCTGGATTGTCTTTAATCCT | + |
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Preference number: 6 (lower is better) Translates to: KSTDERYSWSIP*LDRVAWIVFNP Trigger: AGGATTAAAGACAATCCAGGCCACCCTGTCTAGGCAAGGGATCGACCATGAGTATCTTTCGTCAGTGGATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CAA 90 bp | GCCAACTTGAATCCATGTCCAGAGAATCCAGCGCCGATGACAATGTaGTCATACTTTGGGTGGCAATCAAGAATAAAGTGCTCATCAGGA | + |
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Preference number: 6 (lower is better) Translates to: ANLNPCPENPAPMTM*SYFGWQSRIKCSSG Trigger: TCCTGATGAGCACTTTATTCTTGATTGCCACCCAAAGTATGACAACATTGTCATCGGCGCTGGATTCTCTGGACATGGATTCAAGTTGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CCA 72 bp | AGAGAATCCAGCGCCGATGACAATGTTGTCATACTTTaGGTGGCAATCAAGAATAAAGTGCTCATCAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: RESSADDNVVIL*VAIKNKVLIRS Trigger: ACTCCTGATGAGCACTTTATTCTTGATTGCCACCCAAAGTATGACAACATTGTCATCGGCGCTGGATTCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CCA 72 bp | ATAACATTCCTTCATCATCATCGTGTAGAAGTCCTCTaGATAAGCCTTTCTGATTATGCGGCTCTGTCCATG | + |
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Preference number: 6 (lower is better) Translates to: ITFLHHHRVEVL*ISLSDYAALSM Trigger: CATGGACAGAGCCGCATAATCAGAAAGGCTTATCCAGAGGACTTCTACACGATGATGATGAAGGAATGTTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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| CDS CCA 72 bp | AATCCAGCGCCGATGACAATGTTGTCATACTTTGGGTaGCAATCAAGAATAAAGTGCTCATCAGGAGTATTC | + |
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Preference number: 6 (lower is better) Translates to: NPAPMTMLSYFG*QSRIKCSSGVF Trigger: GAATACTCCTGATGAGCACTTTATTCTTGATTGCCACCCAAAGTATGACAACATTGTCATCGGCGCTGGATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017597.5 |
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