RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PIP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058499

Ensembl transcript IDs: ENSMUST00000075351.10, ENSMUST00000203244.2, ENSMUST00000204575.2

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATTACAGAGGCAGCGGGTTTGTACATAGTTGAAGGCACCTTCCATTaGTTCATTACTTACAAGGTAAGCTTTGATCTGGTTGGGAGAGAA +
Preference number: 1 (lower is better)
Translates to: ITEAAGLYIVEGTFH*FITYKVSFDLVGRE
Trigger: TTCTCTCCCAACCAGATCAAAGCTTACCTTGTAAGTAATGAACCAATGGAAGGTGCCTTCAACTATGTACAAACCCGCTGCCTCTGTAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR GCA 90 bp TGTCCTTTCTCAGGCTATGCTTTCTATAGCTTTAGATCCCAGAAATaGTCCTCCTATGCTTCCTTTCCAACTATACACTGCTTTTCCATG +
Preference number: 1 (lower is better)
Translates to: CPFSGYAFYSFRSQK*SSYASFPTIHCFSM
Trigger: CATGGAAAAGCAGTGTATAGTTGGAAAGGAAGCATAGGAGGAGCATTTCTGGGATCTAAAGCTATAGAAAGCATAGCCTGAGAAAGGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203244.2
3UTR-3UTR CCA 90 bp GGTTCATCTTCCTGTGCCTGTCTCCTACGTGAAGGCTTGTCCTTGGTACCAGCTCTTCCTGGACTGTTGTaGATGAGGGTTTCTTCTCTG +
Preference number: 2 (lower is better)
Translates to: GSSSCACLLREGLSLVPALPGLL*MRVSSL
Trigger: CAGAGAAGAAACCCTCATCCACAACAGTCCAGGAAG...AGCTGGTACCAAGGACAAGCCTTCACGTAGGAGACAGGCACAGGAAGATGAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR CAA 90 bp GGAGGTTCATCTTCCTGTGCCTGTCTCCTACGTGAAGGCTTGTCCTaGGTACCAGCTAGAGTTCTTGGAAATGACTCATGTGAACTTTTA +
Preference number: 2 (lower is better)
Translates to: GGSSSCACLLREGLS*VPARVLGNDSCELL
Trigger: TAAAAGTTCACATGAGTCATTTCCAAGAACTCTAGCTGGTACCAAGGACAAGCCTTCACGTAGGAGACAGGCACAGGAAGATGAACCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR TCA 90 bp AAGGCTTGTCCTTGGTACCAGCTAGAGTTCTTGGAAATGACTCATGTGAACTTTCTGGACTGTTGTGGATaGGGGTTTCTTCTCTGTGAA +
Preference number: 2 (lower is better)
Translates to: KACPWYQLEFLEMTHVNFLDCCG*GFLLCE
Trigger: TTCACAGAGAAGAAACCCTCATCCACAACAGTCCAG...AAAGTTCACATGAGTCATTTCCAAGAACTCTAGCTGGTACCAAGGACAAGCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR TCA 90 bp GAGAGAAAGCCCACTGTTAGTACAACAAAGGTAAATAGAAGGCAATATAAGTCATGCCTGTCTCCTACGTaGAGGCTTGTCCTTGGTACC +
Preference number: 2 (lower is better)
Translates to: ERKPTVSTTKVNRRQYKSCLSPT*RLVLGT
Trigger: GGTACCAAGGACAAGCCTTCACGTAGGAGACAGGCA...TGACTTATATTGCCTTCTATTTACCTTTGTTGTACTAACAGTGGGCTTTCTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR CAA 90 bp TCAGGGGGACCCTGGAGGGTGAACTATCAGTTCTCTGTGAGCTCTTaGTCTTCTTCCACCTATTTCTATCTTAGATGTTTTCATTCTCTT +
Preference number: 2 (lower is better)
Translates to: SGGPWRVNYQFSVSS*SSSTYFYLRCFHSL
Trigger: AAGAGAATGAAAACATCTAAGATAGAAATAGGTGGAAGAAGACAAAGAGCTCACAGAGAACTGATAGTTCACCCTCCAGGGTCCCCCTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR TCA 90 bp AAGGCTTGTCCTTGGTACCAGCTAGAGTTCTTGGAAATGACTCATGTGAACTTTCAGACTCAGTTGTTTTaGAATGTTGCCTGCACTCAT +
Preference number: 2 (lower is better)
Translates to: KACPWYQLEFLEMTHVNFQTQLF*NVACTH
Trigger: ATGAGTGCAGGCAACATTTCAAAACAACTGAGTCTG...AAAGTTCACATGAGTCATTTCCAAGAACTCTAGCTGGTACCAAGGACAAGCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR GCA 90 bp CATGGCCTAGGGAACACAGACACCATTCAGTCATCAATGTATTATCATTCTGCAAAAAGTTACTCCCTCTaGCCATGTCTGGCCATTATT +
Preference number: 2 (lower is better)
Translates to: HGLGNTDTIQSSMYYHSAKSYSL*PCLAII
Trigger: AATAATGGCCAGACATGGGCAGAGGGAGTAACTTTT...TGCAGAATGATAATACATTGATGACTGAATGGTGTCTGTGTTCCCTAGGCCATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR GCA 90 bp AAGGCTTGTCCTTGGTACCAGCTAGAGTTCTTGGAAATGACTCATGTGAACTTTATTCCAGTCAGATTTTaGCTTGGACTTACTGTCCAT +
Preference number: 2 (lower is better)
Translates to: KACPWYQLEFLEMTHVNFIPVRF*LGLTVH
Trigger: ATGGACAGTAAGTCCAAGGCAAAATCTGACTGGAAT...AAAGTTCACATGAGTCATTTCCAAGAACTCTAGCTGGTACCAAGGACAAGCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR CAA 90 bp ATCCCAGAAAAATCTAATAGGATGATCATTACAGAGGCAGCGGGTTaGTACATAGTTGAAGGCACCTTCCATTGGTTCATTACTTACAAG +
Preference number: 2 (lower is better)
Translates to: IPEKSNRMIITEAAG*YIVEGTFHWFITYK
Trigger: CTTGTAAGTAATGAACCAATGGAAGGTGCCTTCAACTATGTACAAACCCGCTGCCTCTGTAATGATCATCCTATTAGATTTTTCTGGGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR TCA 90 bp GCGGGTTTGTACATAGTTGAAGGCACCTTCCATTGGTTCATTACTTACAAGGTACCATGTATACATTTCTaGTGCTTTCTCCCATATCTA +
Preference number: 2 (lower is better)
Translates to: AGLYIVEGTFHWFITYKVPCIHF*CFLPYL
Trigger: TAGATATGGGAGAAAGCATCAGAAATGTATACATGG...TACCTTGTAAGTAATGAACCAATGGAAGGTGCCTTCAACTATGTACAAACCCGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR GCA 90 bp CATGGCCTAGGGAACACAGACACCATTCAGTCATCAATGTATTATCATTCTGCAATGGAAATCATCATCTaGTCCAAGTTCTCAACATTG +
Preference number: 2 (lower is better)
Translates to: HGLGNTDTIQSSMYYHSAMEIII*SKFSTL
Trigger: CAATGTTGAGAACTTGGAGCAGATGATGATTTCCAT...TGCAGAATGATAATACATTGATGACTGAATGGTGTCTGTGTTCCCTAGGCCATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR CCA 90 bp GAGAGAAAGCCCACTGTTAGTACAACAAAGGTAAATAGAAGGCAATATAAGTCACACTCTTTTTCTTCCTaGACTGTTGTGGATGAGGGT +
Preference number: 2 (lower is better)
Translates to: ERKPTVSTTKVNRRQYKSHSFSS*TVVDEG
Trigger: ACCCTCATCCACAACAGTCCAGGAAGAAAAAGAGTG...TGACTTATATTGCCTTCTATTTACCTTTGTTGTACTAACAGTGGGCTTTCTCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR CCA 90 bp GCGGGTTTGTACATAGTTGAAGGCACCTTCCATTGGTTCATTACTTACAAGGTATTTACTTTGAATATATaGTCAGTATCAGGGCAGTGG +
Preference number: 2 (lower is better)
Translates to: AGLYIVEGTFHWFITYKVFTLNI*SVSGQW
Trigger: CCACTGCCCTGATACTGACCATATATTCAAAGTAAA...TACCTTGTAAGTAATGAACCAATGGAAGGTGCCTTCAACTATGTACAAACCCGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR TCA 90 bp AAACAGGCTCAGTTTAAGTTCTTAATGGAGAAGAAGAAACAGATCCCTCATATTACTATCAGTTCTCTGTaGGCTCTTTGTCTTCTTCCA +
Preference number: 2 (lower is better)
Translates to: KQAQFKFLMEKKKQIPHITISSL*ALCLLP
Trigger: TGGAAGAAGACAAAGAGCTCACAGAGAACTGATAGT...AATATGAGGGATCTGTTTCTTCTTCTCCATTAAGAACTTAAACTGAGCCTGTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR TCA 90 bp GAGAGAAAGCCCACTGTTAGTACAACAAAGGTAAATAGAAGGCAATATAAGTCACAGTTGTTTAAGTGTTaGTTCCAGGACAAGACTTTG +
Preference number: 2 (lower is better)
Translates to: ERKPTVSTTKVNRRQYKSQLFKC*FQDKTL
Trigger: CAAAGTCTTGTCCTGGAATCAACACTTAAACAACTG...TGACTTATATTGCCTTCTATTTACCTTTGTTGTACTAACAGTGGGCTTTCTCTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR TCA 90 bp GAGAGAAAGCCCACTGTTAGTACAACAAAGGTAAATAGAAGGCAATATAAGTCACTAACTCCATCATGTTaGATTATTCTCTCACTCTCA +
Preference number: 2 (lower is better)
Translates to: ERKPTVSTTKVNRRQYKSLTPSC*IILSLS
Trigger: TGAGAGTGAGAGAATAATTCAACATGATGGAGTTAG...TGACTTATATTGCCTTCTATTTACCTTTGTTGTACTAACAGTGGGCTTTCTCTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR GCA 90 bp TACATAGTTGAAGGCACCTTCCATTGGTTCATTACTTACAAGGTAAGCTTTGATGTTGTTTTGAAATGTTaGCTGCACTCATCTTTACTT +
Preference number: 2 (lower is better)
Translates to: YIVEGTFHWFITYKVSFDVVLKC*LHSSLL
Trigger: AAGTAAAGATGAGTGCAGGCAACATTTCAAAACAAC...ATCAAAGCTTACCTTGTAAGTAATGAACCAATGGAAGGTGCCTTCAACTATGTA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR CCA 72 bp GATTTTCCTGTAGGGCCAGCTAAGTCCTTCCAGGGCTaGTTTCCCCAAGTCATTTGCAAGTCACTCCCTTTT +
Preference number: 3 (lower is better)
Translates to: DFPVGPAKSFQG*FPQVICKSLPF
Trigger: AAAAGGGAGTGACTTGCAAATGACTTGGGGAAACCAGCCCTGGAAGGACTTAGCTGGCCCTACAGGAAAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203244.2
3UTR TCA 72 bp CACCTTCCATTGGTTCATTACTTACAAGGTAAGCTTTaGTCTGGTTGGGAGAGAAAGCCCACTGTTAGTACA +
Preference number: 3 (lower is better)
Translates to: HLPLVHYLQGKL*SGWERKPTVST
Trigger: TGTACTAACAGTGGGCTTTCTCTCCCAACCAGATCAAAGCTTACCTTGTAAGTAATGAACCAATGGAAGGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR TCA 72 bp GATGATCATTACAGAGGCAGCGGGTTTGTACATAGTTaGAGGCACCTTCCATTGGTTCATTACTTACAAGGT +
Preference number: 3 (lower is better)
Translates to: DDHYRGSGFVHS*RHLPLVHYLQG
Trigger: ACCTTGTAAGTAATGAACCAATGGAAGGTGCCTTCAACTATGTACAAACCCGCTGCCTCTGTAATGATCATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR CCA 72 bp ATAGAAGGCAATATAAGTCAGGAAATAGCTGAGGCATaGCCTAGGGAACACAGACACCATTCAGTCATCAAT +
Preference number: 3 (lower is better)
Translates to: IEGNISQEIAEA*PREHRHHSVIN
Trigger: ATTGATGACTGAATGGTGTCTGTGTTCCCTAGGCCATGCCTCAGCTATTTCCTGACTTATATTGCCTTCTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR CCA 72 bp GCAGCGGGTTTGTACATAGTTGAAGGCACCTTCCATTaGTTCATTACTTACAAGGTAAGCTTTGATCTGGTT +
Preference number: 3 (lower is better)
Translates to: AAGLYIVEGTFH*FITYKVSFDLV
Trigger: AACCAGATCAAAGCTTACCTTGTAAGTAATGAACCAATGGAAGGTGCCTTCAACTATGTACAAACCCGCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR CCA 72 bp TGGACTGTTGTGGATGAGGGTTTCTTCTCTGTGAAATaGAAATCATCATCTGCTCCAAGTTCTCAACATTGT +
Preference number: 3 (lower is better)
Translates to: WTVVDEGFFSVK*KSSSAPSSQHC
Trigger: ACAATGTTGAGAACTTGGAGCAGATGATGATTTCCATTTCACAGAGAAGAAACCCTCATCCACAACAGTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR CAA 90 bp GCGGGTTTGTACATAGTTGAAGGCACCTTCCATTGGTTCATTACTTACAAGGTAAGTTGTTTTGAAATGTaGCCTGCACTCATCTTTACT +
Preference number: 3 (lower is better)
Translates to: AGLYIVEGTFHWFITYKVSCFEM*PALIFT
Trigger: AGTAAAGATGAGTGCAGGCAACATTTCAAAACAACT...TACCTTGTAAGTAATGAACCAATGGAAGGTGCCTTCAACTATGTACAAACCCGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR CAA 90 bp AAGGCTTGTCCTTGGTACCAGCTAGAGTTCTTGGAAATGACTCATGTGAACTTTCTTTGCTTCTTAAAGTaGAGAATGCCTGTTAACTTC +
Preference number: 3 (lower is better)
Translates to: KACPWYQLEFLEMTHVNFLCFLK*RMPVNF
Trigger: GAAGTTAACAGGCATTCTCAACTTTAAGAAGCAAAG...AAAGTTCACATGAGTCATTTCCAAGAACTCTAGCTGGTACCAAGGACAAGCCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR CAA 90 bp TTTGCTGTGATGGGCACCACTGCCATATCATTAGGACAGATATTCTTTTCTCGACAATATCAATCACTGTaGCAAATGTTACAGTTCCTG +
Preference number: 3 (lower is better)
Translates to: FAVMGTTAISLGQIFFSRQYQSL*QMLQFL
Trigger: CAGGAACTGTAACATTTGCAACAGTGATTGATATTG...TCGAGAAAAGAATATCTGTCCTAATGATATGGCAGTGGTGCCCATCACAGCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203244.2
3UTR TCA 72 bp GTTGTTTTGAAATGTTGCCTGCACTCATCTTTACTTTaGATATATGGTCAGTATCAGGGCAGTGGTATGATT +
Preference number: 3 (lower is better)
Translates to: VVLKCCLHSSLL*IYGQYQGSGMI
Trigger: AATCATACCACTGCCCTGATACTGACCATATATTCAAAGTAAAGATGAGTGCAGGCAACATTTCAAAACAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR-3UTR CAA 90 bp GAGAGAAAGCCCACTGTTAGTACAACAAAGGTAAATAGAAGGCAATATAAGTCATCTAACTCCATCATGTaGAATTATTCTCTCACTCTC +
Preference number: 3 (lower is better)
Translates to: ERKPTVSTTKVNRRQYKSSNSIM*NYSLTL
Trigger: GAGAGTGAGAGAATAATTCAACATGATGGAGTTAGA...TGACTTATATTGCCTTCTATTTACCTTTGTTGTACTAACAGTGGGCTTTCTCTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
CDS-3UTR TCA 90 bp GGTTCATCTTCCTGTGCCTGTCTCCTACGTGAAGGCTTGTCCTTGGTACCAGCTCATCCTGGCTTTCAATaGTCCCCAGCTGCAGACATA +
Preference number: 4 (lower is better)
Translates to: GSSSCACLLREGLSLVPAHPGFQ*SPAADI
Trigger: TATGTCTGCAGCTGGGGATCATTGAAAGCCAGGATG...AGCTGGTACCAAGGACAAGCCTTCACGTAGGAGACAGGCACAGGAAGATGAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR CAA 72 bp GGTTCATCTTCCTGTGCCTGTCTCCTACGTGAAGGCTaGTCCTTGGTACCAGCTAGAGTTCTTGGAAATGAC +
Preference number: 4 (lower is better)
Translates to: GSSSCACLLREG*SLVPARVLGND
Trigger: GTCATTTCCAAGAACTCTAGCTGGTACCAAGGACAAGCCTTCACGTAGGAGACAGGCACAGGAAGATGAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR CAA 72 bp TCTTCCTGTGCCTGTCTCCTACGTGAAGGCTTGTCCTaGGTACCAGCTAGAGTTCTTGGAAATGACTCATGT +
Preference number: 4 (lower is better)
Translates to: SSCACLLREGLS*VPARVLGNDSC
Trigger: ACATGAGTCATTTCCAAGAACTCTAGCTGGTACCAAGGACAAGCCTTCACGTAGGAGACAGGCACAGGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR CAA 72 bp CAGGCCCCTGACTCAGCCAAGTCTAACTCCATCATGTaGAATTATTCTCTCACTCTCATCAATTACAACCAC +
Preference number: 4 (lower is better)
Translates to: QAPDSAKSNSIM*NYSLTLINYNH
Trigger: GTGGTTGTAATTGATGAGAGTGAGAGAATAATTCAACATGATGGAGTTAGACTTGGCTGAGTCAGGGGCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
CDS-3UTR TCA 90 bp ATGGGCACCACTGCCATATCATTAGGACAGATATTCTTTTCTCGAACAATATCACATCCTGGCTTTCAATaGTCCCCAGCTGCAGACATA +
Preference number: 4 (lower is better)
Translates to: MGTTAISLGQIFFSRTISHPGFQ*SPAADI
Trigger: TATGTCTGCAGCTGGGGATCATTGAAAGCCAGGATG...TGATATTGTTCGAGAAAAGAATATCTGTCCTAATGATATGGCAGTGGTGCCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203244.2
3UTR CAA 72 bp CCCTGGAGGGTGAACTATCAGTTCTCTGTGAGCTCTTaGTCTTCTTCCACCTATTTCTATCTTAGATGTTTT +
Preference number: 4 (lower is better)
Translates to: PWRVNYQFSVSS*SSSTYFYLRCF
Trigger: AAAACATCTAAGATAGAAATAGGTGGAAGAAGACAAAGAGCTCACAGAGAACTGATAGTTCACCCTCCAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
CDS-3UTR CCA 90 bp CTATGCTTCCTTTCCAACTATACACTGCTTTTCCATGCTTCCAAGTGGAAGTTCGAAGGCACCTTCCATTaGTTCATTACTTACAAGGTA +
Preference number: 4 (lower is better)
Translates to: LCFLSNYTLLFHASKWKFEGTFH*FITYKV
Trigger: TACCTTGTAAGTAATGAACCAATGGAAGGTGCCTTC...GAACTTCCACTTGGAAGCATGGAAAAGCAGTGTATAGTTGGAAAGGAAGCATAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203244.2
CDS-3UTR CCA 90 bp ATGGGCACCACTGCCATATCATTAGGACAGATATTCTTTTCTCGAACAATATCAACATTTTCATCATCCTaGCTTTCAATGATCCCCAGC +
Preference number: 4 (lower is better)
Translates to: MGTTAISLGQIFFSRTISTFSSS*LSMIPS
Trigger: GCTGGGGATCATTGAAAGCCAGGATGATGAAAATGT...TGATATTGTTCGAGAAAAGAATATCTGTCCTAATGATATGGCAGTGGTGCCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000203244.2
3UTR CAA 72 bp AAATCTAATAGGATGATCATTACAGAGGCAGCGGGTTaGTACATAGTTGAAGGCACCTTCCATTGGTTCATT +
Preference number: 4 (lower is better)
Translates to: KSNRMIITEAAG*YIVEGTFHWFI
Trigger: AATGAACCAATGGAAGGTGCCTTCAACTATGTACAAACCCGCTGCCTCTGTAATGATCATCCTATTAGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
CDS-3UTR CCA 90 bp TTTCTTCTCTGTGAAATGGAAATCATCATCTGCTCCAAGTTCTCAACATTGTTGACATTTTCATCATCCTaGCTTTCAATGATCCCCAGC +
Preference number: 4 (lower is better)
Translates to: FLLCEMEIIICSKFSTLLTFSSS*LSMIPS
Trigger: GCTGGGGATCATTGAAAGCCAGGATGATGAAAATGT...CAACAATGTTGAGAACTTGGAGCAGATGATGATTTCCATTTCACAGAGAAGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
3UTR CAA 72 bp AGTTGTTTTGAAATGTTGCCTGCACTCATCTTTACTTaGAATATATGGTCAGTATCAGGGCAGTGGTATGAT +
Preference number: 4 (lower is better)
Translates to: SCFEMLPALIFT*NIWSVSGQWYD
Trigger: ATCATACCACTGCCCTGATACTGACCATATATTCAAAGTAAAGATGAGTGCAGGCAACATTTCAAAACAACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204575.2
CDS CCA 90 bp ATTACAGAGGCAGCGGGTTTGTACATAGTTGAAGGCACCTTCCATTaGTTCATTACTTACAAGGTAAGCTTTGATCACCATACATTCTCT +
Preference number: 5 (lower is better)
Translates to: ITEAAGLYIVEGTFH*FITYKVSFDHHTFS
Trigger: AGAGAATGTATGGTGATCAAAGCTTACCTTGTAAGTAATGAACCAATGGAAGGTGCCTTCAACTATGTACAAACCCGCTGCCTCTGTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075351.10
ENSMUST00000203244.2
CDS TCA 72 bp GTGGCTTTCGGACATTTTCATCATCCTGGCTTTCAATaGTCCCCAGCTGCAGACATAGGACCAAGAAGAGTG +
Preference number: 6 (lower is better)
Translates to: VAFGHFHHPGFQ*SPAADIGPRRV
Trigger: CACTCTTCTTGGTCCTATGTCTGCAGCTGGGGATCATTGAAAGCCAGGATGATGAAAATGTCCGAAAGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075351.10
ENSMUST00000203244.2
ENSMUST00000204575.2
CDS GCA 72 bp ACATTTTCATCATCCTGGCTTTCAATGATCCCCAGCTaGAGACATAGGACCAAGAAGAGTGTCACAGCACTG +
Preference number: 6 (lower is better)
Translates to: TFSSSWLSMIPS*RHRTKKSVTAL
Trigger: CAGTGCTGTGACACTCTTCTTGGTCCTATGTCTGCAGCTGGGGATCATTGAAAGCCAGGATGATGAAAATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075351.10
ENSMUST00000203244.2
ENSMUST00000204575.2
CDS CCA 72 bp GCAGCGGGTTTGTACATAGTTGAAGGCACCTTCCATTaGTTCATTACTTACAAGGTAAGCTTTGATCACCAT +
Preference number: 6 (lower is better)
Translates to: AAGLYIVEGTFH*FITYKVSFDHH
Trigger: ATGGTGATCAAAGCTTACCTTGTAAGTAATGAACCAATGGAAGGTGCCTTCAACTATGTACAAACCCGCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075351.10
ENSMUST00000203244.2
CDS CAA 72 bp TACAAGGTAAGCTTTGATCACCATACATTCTCTATATaGTGTTTCAACTGTAACTTGCACAGTGATCTCCTG +
Preference number: 6 (lower is better)
Translates to: YKVSFDHHTFSI*CFNCNLHSDLL
Trigger: CAGGAGATCACTGTGCAAGTTACAGTTGAAACACAATATAGAGAATGTATGGTGATCAAAGCTTACCTTGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075351.10
ENSMUST00000203244.2
CDS CAA 90 bp TTCATTACTTACAAGGTAAGCTTTGATCACCATACATTCTCTATATaGTGTTTCAACTGTAACTTGCACAGTGATCTCCTGATTTTCCTG +
Preference number: 6 (lower is better)
Translates to: FITYKVSFDHHTFSI*CFNCNLHSDLLIFL
Trigger: CAGGAAAATCAGGAGATCACTGTGCAAGTTACAGTTGAAACACAATATAGAGAATGTATGGTGATCAAAGCTTACCTTGTAAGTAATGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075351.10
ENSMUST00000203244.2