Pregenerated sensors for PINX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021958Ensembl transcript IDs: ENSMUST00000022528.6
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | GCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTaGAGTGTGCTGACAGTTGAGTGGTTGGAGGCCACA | + |
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Preference number: 3 (lower is better) Translates to: ATWASPCSHFRP*SVLTVEWLEAT Trigger: TGTGGCCTCCAACCACTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR GCA 90 bp | ACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAGCTGGGGCCTCCAGGCTaGAGCTCTGCTCGGTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: TWASPCSHFRPCSVLTVELGPPG*SSARSL Trigger: GAGAGACCGAGCAGAGCTGCAGCCTGGAGGCCCCAG...CTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CCA 90 bp | AGCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTCTCGGTCTCTCTTCTTaGCCACAGGGCCCCTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: SHLGFAVLSLQALQCADSLGLSS*PQGPSL Trigger: CAGAGAGGGGCCCTGTGGCCAAGAAGAGAGACCGAG...ACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CCA 90 bp | GCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTAACACTCGTCCTCACTaGGGCCTCCAGGCTGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: ATWASPCSHFRPCSVLTVNTRPH*GLQAAA Trigger: AGCTGCAGCCTGGAGGCCCCAGTGAGGACGAGTGTT...AACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR GCA 90 bp | ACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAGTCCAGGCTGCAGCTCTaGTCGGTCTCTCTTCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: TWASPCSHFRPCSVLTVESRLQL*SVSLLG Trigger: GCCAAGAAGAGAGACCGAGCAGAGCTGCAGCCTGGA...CTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR TCA 90 bp | TGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAGTGGGACCGTGGCAAGTGTTaGGTGCTGCCAAAAGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: WASPCSHFRPCSVLTVEWDRGKC*VLPKAG Trigger: ACCAGCTTTTGGCAGCACTCAACACTTGCCACGGTC...CCACTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR TCA 90 bp | ACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAGGTCAGACCCTGGAGCTaGGGCTTGTGGCTTGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: TWASPCSHFRPCSVLTVEVRPWS*GLWLVL Trigger: AAGAACAAGCCACAAGCCTCAGCTCCAGGGTCTGAC...CTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR TCA 90 bp | TGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAGTGGTTCAACAGGGGTCTCTaGAAGGTCAGACCCTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: WASPCSHFRPCSVLTVEWFNRGL*KVRPWS Trigger: GCTCCAGGGTCTGACCTTTCAGAGACCCCTGTTGAA...CCACTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR TCA 90 bp | GCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAATCTGCTGTTTCCTaGCCGTGGCAAGTGTTGAGT | + |
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Preference number: 4 (lower is better) Translates to: ATWASPCSHFRPCSVLTVESAVS*PWQVLS Trigger: ACTCAACACTTGCCACGGTCAGGAAACAGCAGATTC...AACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR TCA 90 bp | ACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAGTTGCTGCAGCCATCCTaGGCAAGCTTCTTGTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: TWASPCSHFRPCSVLTVELLQPS*ASFLFL Trigger: GAGGAACAAGAAGCTTGCTCAGGATGGCTGCAGCAA...CTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR GCA 90 bp | TGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAGTGGCACAGGGCCCCTCTCTaGTTCCACACGCTTTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: WASPCSHFRPCSVLTVEWHRAPL*FHTLFL Trigger: AAGAAAAAGCGTGTGGAAGCAGAGAGGGGCCCTGTG...CCACTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CCA 90 bp | TCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAGTGGTTGGAGTGGTGGTCGTGGTTGTaGTCAGGGAGGTGTTCACCT | + |
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Preference number: 4 (lower is better) Translates to: SPCSHFRPCSVLTVEWLEWWSWL*SGRCSP Trigger: AGGTGAACACCTCCCTGACCACAACCACGACCACCA...CTCCAACCACTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR GCA 90 bp | AGCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTGCAAGTGTTGAGTGCTaGCAAAAGCTGGTTGAAGTC | + |
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Preference number: 4 (lower is better) Translates to: SHLGFAVLSLQALQCADSASVEC*QKLVEV Trigger: GACTTCAACCAGCTTTTGGCAGCACTCAACACTTGC...ACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR GCA 90 bp | ACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAGGTGGCAAGTGTTGAGTaGTGCCAAAAGCTGGTTGAA | + |
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Preference number: 4 (lower is better) Translates to: TWASPCSHFRPCSVLTVEVASVE*CQKLVE Trigger: TTCAACCAGCTTTTGGCAGCACTCAACACTTGCCAC...CTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CCA 90 bp | GCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTTTGCTTTCCTCTTCTTaGGCTTTGGGACATCATCCT | + |
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Preference number: 4 (lower is better) Translates to: ATWASPCSHFRPCSVLTVLLSSS*ALGHHP Trigger: AGGATGATGTCCCAAAGCCCAAGAAGAGGAAAGCAA...AACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR TCA 90 bp | AGCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTCTTTTCCTTTTTGTCTaGGGAATCTGCTGTTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: SHLGFAVLSLQALQCADSLFLFV*GICCFL Trigger: CAGGAAACAGCAGATTCCTCAGACAAAAAGGAAAAG...ACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR GCA 90 bp | AGCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTCGCTTTTTCTTTTTATaGCTCTTGGCCTTGTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: SHLGFAVLSLQALQCADSRFFFL*LLALCW Trigger: CCAACACAAGGCCAAGAGGCATAAAAAGAAAAAGCG...ACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR GCA 90 bp | AGCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTACTCCTTCTGGCCTTTaGAGCTTTTTCTTTGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: SHLGFAVLSLQALQCADSTPSGL*SFFFAF Trigger: GAAAGCAAAGAAAAAGCTGCAAAGGCCAGAAGGAGT...ACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CCA 90 bp | ACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAGTCTTCTGGCCAAACTTaGAATCATCGTTACTCCACG | + |
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Preference number: 4 (lower is better) Translates to: TWASPCSHFRPCSVLTVESSGQT*NHRYST Trigger: CGTGGAGTAACGATGATTCCAAGTTTGGCCAGAAGA...CTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CCA 90 bp | AGCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTTCTCAAGCATCTTCTaGCCAAACTTGGAATCATCG | + |
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Preference number: 4 (lower is better) Translates to: SHLGFAVLSLQALQCADSFSSIF*PNLESS Trigger: CGATGATTCCAAGTTTGGCCAGAAGATGCTTGAGAA...ACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CCA 90 bp | GCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTATTGGGCCATTCTCTTaGCAAAATATTCCTGGATGG | + |
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Preference number: 4 (lower is better) Translates to: ATWASPCSHFRPCSVLTVIGPFS*QNIPGW Trigger: CCATCCAGGAATATTTTGCCAAGAGAATGGCCCAAT...AACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR TCA 90 bp | AGCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTGATCCTTCCCTTTTGTaGATTTCATATAATGAACCC | + |
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Preference number: 4 (lower is better) Translates to: SHLGFAVLSLQALQCADSDPSLL*ISYNEP Trigger: GGGTTCATTATATGAAATTCACAAAAGGGAAGGATC...ACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR GCA 90 bp | TCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAGTGGTTGGAGTCCTTTTTCCAAAAATaGAGTCCAGGTCGGTTTCAC | + |
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Preference number: 4 (lower is better) Translates to: SPCSHFRPCSVLTVEWLESFFQK*SPGRFH Trigger: GTGAAACCGACCTGGACTGCATTTTTGGAAAAAGGA...CTCCAACCACTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CCA 90 bp | AGCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTGCTCCAAGTCCCAGGTaGTTATTTTTAACTTTAACT | + |
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Preference number: 4 (lower is better) Translates to: SHLGFAVLSLQALQCADSAPSPR*LFLTLT Trigger: AGTTAAAGTTAAAAATAACCACCTGGGACTTGGAGC...ACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CCA 90 bp | TCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAGTGGTTGGAGGGCTTGTTCTTTAATTaGGCCATTCTCTTGGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: SPCSHFRPCSVLTVEWLEGLFFN*AILLAK Trigger: TTTTGCCAAGAGAATGGCCCAATTAAAGAACAAGCC...CTCCAACCACTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CCA 90 bp | TCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAGTGGTTGGAGTATTTCTACTCCTTCTaGCCTTTGCAGCTTTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: SPCSHFRPCSVLTVEWLEYFYSF*PLQLFL Trigger: AAGAAAAAGCTGCAAAGGCCAGAAGGAGTAGAAATA...CTCCAACCACTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS GCA 90 bp | GGCATCGGAACACTCGTCCTCACTGGGGCCTCCAGGCTGCAGCTCTaGTCGGTCTCTCTTCTTGGCCACAGGGCCCCTCTCTGCTTCCAC | + |
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Preference number: 5 (lower is better) Translates to: GIGTLVLTGASRLQL*SVSLLGHRAPLCFH Trigger: GTGGAAGCAGAGAGGGGCCCTGTGGCCAAGAAGAGAGACCGAGCAGAGCTGCAGCCTGGAGGCCCCAGTGAGGACGAGTGTTCCGATGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CAA 90 bp | GCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGCTCGGTCTCTCTTCTaGGCCACAGGGCCCCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: ATWASPCSHFRPCSVLTVARSLF*ATGPLS Trigger: AGAGAGGGGCCCTGTGGCCAAGAAGAGAGACCGAGC...AACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CAA 90 bp | AGCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTTATGCCTCTTGGCCTaGTGTTGGGGAGAGTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: SHLGFAVLSLQALQCADSLCLLA*CWGEFS Trigger: AGAGAACTCTCCCCAACACAAGGCCAAGAGGCATAA...ACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CAA 90 bp | AGCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTCCTCTTCTTGGGCTTaGGGACATCATCCTGGATGT | + |
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Preference number: 5 (lower is better) Translates to: SHLGFAVLSLQALQCADSSSSWA*GHHPGC Trigger: ACATCCAGGATGATGTCCCAAAGCCCAAGAAGAGGA...ACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CAA 90 bp | AGCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTTTGCTTTCCTCTTCTaGGGCTTTGGGACATCATCC | + |
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Preference number: 5 (lower is better) Translates to: SHLGFAVLSLQALQCADSFAFLF*GFGTSS Trigger: GGATGATGTCCCAAAGCCCAAGAAGAGGAAAGCAAA...ACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CAA 90 bp | TGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAGTGGGCTGAGGCTTGTGGCTaGTTCTTTAATTGGGCCATT | + |
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Preference number: 5 (lower is better) Translates to: WASPCSHFRPCSVLTVEWAEACG*FFNWAI Trigger: AATGGCCCAATTAAAGAACAAGCCACAAGCCTCAGC...CCACTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CAA 90 bp | AGCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTAATTGGGCCATTCTCTaGGCAAAATATTCCTGGATG | + |
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Preference number: 5 (lower is better) Translates to: SHLGFAVLSLQALQCADSNWAIL*AKYSWM Trigger: CATCCAGGAATATTTTGCCAAGAGAATGGCCCAATT...ACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CAA 90 bp | AGCCACCTGGGCTTCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTACTCCTTCTGGCCTTaGCAGCTTTTTCTTTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: SHLGFAVLSLQALQCADSYSFWP*QLFLCF Trigger: AAAGCAAAGAAAAAGCTGCAAAGGCCAGAAGGAGTA...ACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGAAGCCCAGGTGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS-3UTR CAA 90 bp | TCGCCGTGCTCTCACTTCAGGCCCTGCAGTGTGCTGACAGTTGAGTGGTTGGAGATCTTCTGGCCAAACTaGGAATCATCGTTACTCCAC | + |
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Preference number: 5 (lower is better) Translates to: SPCSHFRPCSVLTVEWLEIFWPN*ESSLLH Trigger: GTGGAGTAACGATGATTCCAAGTTTGGCCAGAAGAT...CTCCAACCACTCAACTGTCAGCACACTGCAGGGCCTGAAGTGAGAGCACGGCGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS TCA 90 bp | AGGGAGGTGTTCACCTCATCCGCAGAGGAGTTGCTGCAGCCATCCTaGGCAAGCTTCTTGTTCCTCCTTTTTCCAAAAATGCAGTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: REVFTSSAEELLQPS*ASFLFLLFPKMQSR Trigger: CCTGGACTGCATTTTTGGAAAAAGGAGGAACAAGAAGCTTGCTCAGGATGGCTGCAGCAACTCCTCTGCGGATGAGGTGAACACCTCCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS GCA 90 bp | TGGTTGTGGTCAGGGAGGTGTTCACCTCATCCGCAGAGGAGTTGCTaGAGCCATCCTGAGCAAGCTTCTTGTTCCTCCTTTTTCCAAAAA | + |
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Preference number: 5 (lower is better) Translates to: WLWSGRCSPHPQRSC*SHPEQASCSSFFQK Trigger: TTTTTGGAAAAAGGAGGAACAAGAAGCTTGCTCAGGATGGCTGCAGCAACTCCTCTGCGGATGAGGTGAACACCTCCCTGACCACAACCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS CCA 90 bp | AGCTTTTTCTTTGCTTTCCTCTTCTTGGGCTTTGGGACATCATCCTaGATGTCTGGTGTTTGTACACAATCTTCTGCAGCTTCGACAGAG | + |
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Preference number: 5 (lower is better) Translates to: SFFFAFLFLGFGTSS*MSGVCTQSSAASTE Trigger: CTCTGTCGAAGCTGCAGAAGATTGTGTACAAACACCAGACATCCAGGATGATGTCCCAAAGCCCAAGAAGAGGAAAGCAAAGAAAAAGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS TCA 72 bp | TTCACCTCATCCGCAGAGGAGTTGCTGCAGCCATCCTaGGCAAGCTTCTTGTTCCTCCTTTTTCCAAAAATG | + |
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Preference number: 6 (lower is better) Translates to: FTSSAEELLQPS*ASFLFLLFPKM Trigger: CATTTTTGGAAAAAGGAGGAACAAGAAGCTTGCTCAGGATGGCTGCAGCAACTCCTCTGCGGATGAGGTGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS CCA 72 bp | ACACGCTTTTTCTTTTTATGCCTCTTGGCCTTGTGTTaGGGAGAGTTCTCTACATCTGTGTCTGCTGCCTCT | + |
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Preference number: 6 (lower is better) Translates to: TRFFFLCLLALC*GEFSTSVSAAS Trigger: AGAGGCAGCAGACACAGATGTAGAGAACTCTCCCCAACACAAGGCCAAGAGGCATAAAAAGAAAAAGCGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS CCA 72 bp | TCTTCTTCTTCTTTTTCACCGGTGCTCTGTCTAGTGTaGCGTCTATTTCTACTCCTTCTGGCCTTTGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: SSSSFSPVLCLV*RLFLLLLAFAA Trigger: AGCTGCAAAGGCCAGAAGGAGTAGAAATAGACGCCACACTAGACAGAGCACCGGTGAAAAAGAAGAAGAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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| CDS CCA 72 bp | TTTGCTTTCCTCTTCTTGGGCTTTGGGACATCATCCTaGATGTCTGGTGTTTGTACACAATCTTCTGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: FAFLFLGFGTSS*MSGVCTQSSAA Trigger: AGCTGCAGAAGATTGTGTACAAACACCAGACATCCAGGATGATGTCCCAAAGCCCAAGAAGAGGAAAGCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022528.6 |
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