RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PINLYP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000011632

Ensembl transcript IDs: ENSMUST00000011776.8

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp TCCCGGCCCACGCAGCGAGCTGCCTGGGTTCCTGGACAGGTCTCCTaGAAGGGCGCAATGCAGGAGGGACACATCAGGCCATTCTCTGTC +
Preference number: 5 (lower is better)
Translates to: SRPTQRAAWVPGQVS*KGAMQEGHIRPFSV
Trigger: GACAGAGAATGGCCTGATGTGTCCCTCCTGCATTGCGCCCTTCCAGGAGACCTGTCCAGGAACCCAGGCAGCTCGCTGCGTGGGCCGGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS GCA 90 bp GCCAGCAAAATAGATGCAGTGTGTTTCCCGGCCCACGCAGCGAGCTaGCTGGGTTCCTGGACAGGTCTCCTGGAAGGGCGCAATGCAGGA +
Preference number: 5 (lower is better)
Translates to: ASKIDAVCFPAHAAS*LGSWTGLLEGRNAG
Trigger: TCCTGCATTGCGCCCTTCCAGGAGACCTGTCCAGGAACCCAGGCAGCTCGCTGCGTGGGCCGGGAAACACACTGCATCTATTTTGCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS GCA 90 bp AGCGAGCTGCCTGGGTTCCTGGACAGGTCTCCTGGAAGGGCGCAATaGAGGAGGGACACATCAGGCCATTCTCTGTCCGATTGTTCAAGG +
Preference number: 5 (lower is better)
Translates to: SELPGFLDRSPGRAQ*RRDTSGHSLSDCSR
Trigger: CCTTGAACAATCGGACAGAGAATGGCCTGATGTGTCCCTCCTGCATTGCGCCCTTCCAGGAGACCTGTCCAGGAACCCAGGCAGCTCGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS CCA 90 bp GACAGCAGTGGGCGTTGGACACCATGTAGTCACTGGGAGTCATGGTaGTTGATACGAAGCCTGAGTAGCAGTCTTTGTACTTCATGCAGG +
Preference number: 5 (lower is better)
Translates to: DSSGRWTPCSHWESW*LIRSLSSSLCTSCR
Trigger: CCTGCATGAAGTACAAAGACTGCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACGCCCACTGCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS CCA 90 bp AACCGTCACTTTGACAGCAGTGGGCGTTGGACACCATGTAGTCACTaGGAGTCATGGTGGTTGATACGAAGCCTGAGTAGCAGTCTTTGT +
Preference number: 5 (lower is better)
Translates to: NRHFDSSGRWTPCSH*ESWWLIRSLSSSLC
Trigger: ACAAAGACTGCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACGCCCACTGCTGTCAAAGTGACGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS TCA 90 bp TTGATACGAAGCCTGAGTAGCAGTCTTTGTACTTCATGCAGGCCTTaGAGGTGTTCACTGACTTTCGGCCCTTTGTGCTGGACTCGCTCA +
Preference number: 5 (lower is better)
Translates to: LIRSLSSSLCTSCRP*RCSLTFGPLCWTRS
Trigger: TGAGCGAGTCCAGCACAAAGGGCCGAAAGTCAGTGAACACCTTCAAGGCCTGCATGAAGTACAAAGACTGCTACTCAGGCTTCGTATCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS CCA 90 bp TTTGACAGCAGTGGGCGTTGGACACCATGTAGTCACTGGGAGTCATaGTGGTTGATACGAAGCCTGAGTAGCAGTCTTTGTACTTCATGC +
Preference number: 5 (lower is better)
Translates to: FDSSGRWTPCSHWES*WLIRSLSSSLCTSC
Trigger: GCATGAAGTACAAAGACTGCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACGCCCACTGCTGTCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS TCA 72 bp GCAGTCTGCCCGGCGCAGGAAGTAGAGATAGAAGGCTaGAGGGACCTCAGCCCCTGCCTTGGTGTGGCAGGC +
Preference number: 6 (lower is better)
Translates to: AVCPAQEVEIEG*RDLSPCLGVAG
Trigger: GCCTGCCACACCAAGGCAGGGGCTGAGGTCCCTTCAGCCTTCTATCTCTACTTCCTGCGCCGGGCAGACTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS GCA 72 bp ATAGATGCAGTGTGTTTCCCGGCCCACGCAGCGAGCTaGCTGGGTTCCTGGACAGGTCTCCTGGAAGGGCGC +
Preference number: 6 (lower is better)
Translates to: IDAVCFPAHAAS*LGSWTGLLEGR
Trigger: GCGCCCTTCCAGGAGACCTGTCCAGGAACCCAGGCAGCTCGCTGCGTGGGCCGGGAAACACACTGCATCTAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS CCA 72 bp ATGCAGTGTGTTTCCCGGCCCACGCAGCGAGCTGCCTaGGTTCCTGGACAGGTCTCCTGGAAGGGCGCAATG +
Preference number: 6 (lower is better)
Translates to: MQCVSRPTQRAA*VPGQVSWKGAM
Trigger: CATTGCGCCCTTCCAGGAGACCTGTCCAGGAACCCAGGCAGCTCGCTGCGTGGGCCGGGAAACACACTGCAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS GCA 72 bp CCTGGGTTCCTGGACAGGTCTCCTGGAAGGGCGCAATaGAGGAGGGACACATCAGGCCATTCTCTGTCCGAT +
Preference number: 6 (lower is better)
Translates to: PGFLDRSPGRAQ*RRDTSGHSLSD
Trigger: ATCGGACAGAGAATGGCCTGATGTGTCCCTCCTGCATTGCGCCCTTCCAGGAGACCTGTCCAGGAACCCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS CAA 90 bp AAGGGCGCAATGCAGGAGGGACACATCAGGCCATTCTCTGTCCGATaGTTCAAGGGAGGGGGCACAGAGCCACTGTTGCAACCGTCACTT +
Preference number: 6 (lower is better)
Translates to: KGAMQEGHIRPFSVR*FKGGGTEPLLQPSL
Trigger: AAGTGACGGTTGCAACAGTGGCTCTGTGCCCCCTCCCTTGAACAATCGGACAGAGAATGGCCTGATGTGTCCCTCCTGCATTGCGCCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS GCA 72 bp CCGTCTTCACAGGTCTTCATCTTCCCGCTGCATGTGTaGCCCGAGCCTTTGCACACCTCACAAGTTAGAGGG +
Preference number: 6 (lower is better)
Translates to: PSSQVFIFPLHV*PEPLHTSQVRG
Trigger: CCCTCTAACTTGTGAGGTGTGCAAAGGCTCGGGGCACACATGCAGCGGGAAGATGAAGACCTGTGAAGACGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS CAA 72 bp ATGCAGGAGGGACACATCAGGCCATTCTCTGTCCGATaGTTCAAGGGAGGGGGCACAGAGCCACTGTTGCAA +
Preference number: 6 (lower is better)
Translates to: MQEGHIRPFSVR*FKGGGTEPLLQ
Trigger: TTGCAACAGTGGCTCTGTGCCCCCTCCCTTGAACAATCGGACAGAGAATGGCCTGATGTGTCCCTCCTGCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS CCA 72 bp TTTGACAGCAGTGGGCGTTGGACACCATGTAGTCACTaGGAGTCATGGTGGTTGATACGAAGCCTGAGTAGC +
Preference number: 6 (lower is better)
Translates to: FDSSGRWTPCSH*ESWWLIRSLSS
Trigger: GCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACGCCCACTGCTGTCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS CAA 90 bp AGCAGTGGGCGTTGGACACCATGTAGTCACTGGGAGTCATGGTGGTaGATACGAAGCCTGAGTAGCAGTCTTTGTACTTCATGCAGGCCT +
Preference number: 6 (lower is better)
Translates to: SSGRWTPCSHWESWW*IRSLSSSLCTSCRP
Trigger: AGGCCTGCATGAAGTACAAAGACTGCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACGCCCACTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS TCA 72 bp AGCCTGAGTAGCAGTCTTTGTACTTCATGCAGGCCTTaGAGGTGTTCACTGACTTTCGGCCCTTTGTGCTGG +
Preference number: 6 (lower is better)
Translates to: SLSSSLCTSCRP*RCSLTFGPLCW
Trigger: CCAGCACAAAGGGCCGAAAGTCAGTGAACACCTTCAAGGCCTGCATGAAGTACAAAGACTGCTACTCAGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS CCA 72 bp GGGCGTTGGACACCATGTAGTCACTGGGAGTCATGGTaGTTGATACGAAGCCTGAGTAGCAGTCTTTGTACT +
Preference number: 6 (lower is better)
Translates to: GRWTPCSHWESW*LIRSLSSSLCT
Trigger: AGTACAAAGACTGCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS CCA 72 bp AGTGGGCGTTGGACACCATGTAGTCACTGGGAGTCATaGTGGTTGATACGAAGCCTGAGTAGCAGTCTTTGT +
Preference number: 6 (lower is better)
Translates to: SGRWTPCSHWES*WLIRSLSSSLC
Trigger: ACAAAGACTGCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACGCCCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8
CDS CAA 72 bp CGTTGGACACCATGTAGTCACTGGGAGTCATGGTGGTaGATACGAAGCCTGAGTAGCAGTCTTTGTACTTCA +
Preference number: 6 (lower is better)
Translates to: RWTPCSHWESWW*IRSLSSSLCTS
Trigger: TGAAGTACAAAGACTGCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011776.8