Pregenerated sensors for PINLYP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000011632Ensembl transcript IDs: ENSMUST00000011776.8
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS CCA 90 bp | TCCCGGCCCACGCAGCGAGCTGCCTGGGTTCCTGGACAGGTCTCCTaGAAGGGCGCAATGCAGGAGGGACACATCAGGCCATTCTCTGTC | + |
Preference number: 5 (lower is better) Translates to: SRPTQRAAWVPGQVS*KGAMQEGHIRPFSV Trigger: GACAGAGAATGGCCTGATGTGTCCCTCCTGCATTGCGCCCTTCCAGGAGACCTGTCCAGGAACCCAGGCAGCTCGCTGCGTGGGCCGGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS GCA 90 bp | GCCAGCAAAATAGATGCAGTGTGTTTCCCGGCCCACGCAGCGAGCTaGCTGGGTTCCTGGACAGGTCTCCTGGAAGGGCGCAATGCAGGA | + |
Preference number: 5 (lower is better) Translates to: ASKIDAVCFPAHAAS*LGSWTGLLEGRNAG Trigger: TCCTGCATTGCGCCCTTCCAGGAGACCTGTCCAGGAACCCAGGCAGCTCGCTGCGTGGGCCGGGAAACACACTGCATCTATTTTGCTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS GCA 90 bp | AGCGAGCTGCCTGGGTTCCTGGACAGGTCTCCTGGAAGGGCGCAATaGAGGAGGGACACATCAGGCCATTCTCTGTCCGATTGTTCAAGG | + |
Preference number: 5 (lower is better) Translates to: SELPGFLDRSPGRAQ*RRDTSGHSLSDCSR Trigger: CCTTGAACAATCGGACAGAGAATGGCCTGATGTGTCCCTCCTGCATTGCGCCCTTCCAGGAGACCTGTCCAGGAACCCAGGCAGCTCGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS CCA 90 bp | GACAGCAGTGGGCGTTGGACACCATGTAGTCACTGGGAGTCATGGTaGTTGATACGAAGCCTGAGTAGCAGTCTTTGTACTTCATGCAGG | + |
Preference number: 5 (lower is better) Translates to: DSSGRWTPCSHWESW*LIRSLSSSLCTSCR Trigger: CCTGCATGAAGTACAAAGACTGCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACGCCCACTGCTGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS CCA 90 bp | AACCGTCACTTTGACAGCAGTGGGCGTTGGACACCATGTAGTCACTaGGAGTCATGGTGGTTGATACGAAGCCTGAGTAGCAGTCTTTGT | + |
Preference number: 5 (lower is better) Translates to: NRHFDSSGRWTPCSH*ESWWLIRSLSSSLC Trigger: ACAAAGACTGCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACGCCCACTGCTGTCAAAGTGACGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS TCA 90 bp | TTGATACGAAGCCTGAGTAGCAGTCTTTGTACTTCATGCAGGCCTTaGAGGTGTTCACTGACTTTCGGCCCTTTGTGCTGGACTCGCTCA | + |
Preference number: 5 (lower is better) Translates to: LIRSLSSSLCTSCRP*RCSLTFGPLCWTRS Trigger: TGAGCGAGTCCAGCACAAAGGGCCGAAAGTCAGTGAACACCTTCAAGGCCTGCATGAAGTACAAAGACTGCTACTCAGGCTTCGTATCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS CCA 90 bp | TTTGACAGCAGTGGGCGTTGGACACCATGTAGTCACTGGGAGTCATaGTGGTTGATACGAAGCCTGAGTAGCAGTCTTTGTACTTCATGC | + |
Preference number: 5 (lower is better) Translates to: FDSSGRWTPCSHWES*WLIRSLSSSLCTSC Trigger: GCATGAAGTACAAAGACTGCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACGCCCACTGCTGTCAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS TCA 72 bp | GCAGTCTGCCCGGCGCAGGAAGTAGAGATAGAAGGCTaGAGGGACCTCAGCCCCTGCCTTGGTGTGGCAGGC | + |
Preference number: 6 (lower is better) Translates to: AVCPAQEVEIEG*RDLSPCLGVAG Trigger: GCCTGCCACACCAAGGCAGGGGCTGAGGTCCCTTCAGCCTTCTATCTCTACTTCCTGCGCCGGGCAGACTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS GCA 72 bp | ATAGATGCAGTGTGTTTCCCGGCCCACGCAGCGAGCTaGCTGGGTTCCTGGACAGGTCTCCTGGAAGGGCGC | + |
Preference number: 6 (lower is better) Translates to: IDAVCFPAHAAS*LGSWTGLLEGR Trigger: GCGCCCTTCCAGGAGACCTGTCCAGGAACCCAGGCAGCTCGCTGCGTGGGCCGGGAAACACACTGCATCTAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS CCA 72 bp | ATGCAGTGTGTTTCCCGGCCCACGCAGCGAGCTGCCTaGGTTCCTGGACAGGTCTCCTGGAAGGGCGCAATG | + |
Preference number: 6 (lower is better) Translates to: MQCVSRPTQRAA*VPGQVSWKGAM Trigger: CATTGCGCCCTTCCAGGAGACCTGTCCAGGAACCCAGGCAGCTCGCTGCGTGGGCCGGGAAACACACTGCAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS GCA 72 bp | CCTGGGTTCCTGGACAGGTCTCCTGGAAGGGCGCAATaGAGGAGGGACACATCAGGCCATTCTCTGTCCGAT | + |
Preference number: 6 (lower is better) Translates to: PGFLDRSPGRAQ*RRDTSGHSLSD Trigger: ATCGGACAGAGAATGGCCTGATGTGTCCCTCCTGCATTGCGCCCTTCCAGGAGACCTGTCCAGGAACCCAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS CAA 90 bp | AAGGGCGCAATGCAGGAGGGACACATCAGGCCATTCTCTGTCCGATaGTTCAAGGGAGGGGGCACAGAGCCACTGTTGCAACCGTCACTT | + |
Preference number: 6 (lower is better) Translates to: KGAMQEGHIRPFSVR*FKGGGTEPLLQPSL Trigger: AAGTGACGGTTGCAACAGTGGCTCTGTGCCCCCTCCCTTGAACAATCGGACAGAGAATGGCCTGATGTGTCCCTCCTGCATTGCGCCCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS GCA 72 bp | CCGTCTTCACAGGTCTTCATCTTCCCGCTGCATGTGTaGCCCGAGCCTTTGCACACCTCACAAGTTAGAGGG | + |
Preference number: 6 (lower is better) Translates to: PSSQVFIFPLHV*PEPLHTSQVRG Trigger: CCCTCTAACTTGTGAGGTGTGCAAAGGCTCGGGGCACACATGCAGCGGGAAGATGAAGACCTGTGAAGACGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS CAA 72 bp | ATGCAGGAGGGACACATCAGGCCATTCTCTGTCCGATaGTTCAAGGGAGGGGGCACAGAGCCACTGTTGCAA | + |
Preference number: 6 (lower is better) Translates to: MQEGHIRPFSVR*FKGGGTEPLLQ Trigger: TTGCAACAGTGGCTCTGTGCCCCCTCCCTTGAACAATCGGACAGAGAATGGCCTGATGTGTCCCTCCTGCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS CCA 72 bp | TTTGACAGCAGTGGGCGTTGGACACCATGTAGTCACTaGGAGTCATGGTGGTTGATACGAAGCCTGAGTAGC | + |
Preference number: 6 (lower is better) Translates to: FDSSGRWTPCSH*ESWWLIRSLSS Trigger: GCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACGCCCACTGCTGTCAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS CAA 90 bp | AGCAGTGGGCGTTGGACACCATGTAGTCACTGGGAGTCATGGTGGTaGATACGAAGCCTGAGTAGCAGTCTTTGTACTTCATGCAGGCCT | + |
Preference number: 6 (lower is better) Translates to: SSGRWTPCSHWESWW*IRSLSSSLCTSCRP Trigger: AGGCCTGCATGAAGTACAAAGACTGCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACGCCCACTGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS TCA 72 bp | AGCCTGAGTAGCAGTCTTTGTACTTCATGCAGGCCTTaGAGGTGTTCACTGACTTTCGGCCCTTTGTGCTGG | + |
Preference number: 6 (lower is better) Translates to: SLSSSLCTSCRP*RCSLTFGPLCW Trigger: CCAGCACAAAGGGCCGAAAGTCAGTGAACACCTTCAAGGCCTGCATGAAGTACAAAGACTGCTACTCAGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS CCA 72 bp | GGGCGTTGGACACCATGTAGTCACTGGGAGTCATGGTaGTTGATACGAAGCCTGAGTAGCAGTCTTTGTACT | + |
Preference number: 6 (lower is better) Translates to: GRWTPCSHWESW*LIRSLSSSLCT Trigger: AGTACAAAGACTGCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS CCA 72 bp | AGTGGGCGTTGGACACCATGTAGTCACTGGGAGTCATaGTGGTTGATACGAAGCCTGAGTAGCAGTCTTTGT | + |
Preference number: 6 (lower is better) Translates to: SGRWTPCSHWES*WLIRSLSSSLC Trigger: ACAAAGACTGCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACGCCCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |
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CDS CAA 72 bp | CGTTGGACACCATGTAGTCACTGGGAGTCATGGTGGTaGATACGAAGCCTGAGTAGCAGTCTTTGTACTTCA | + |
Preference number: 6 (lower is better) Translates to: RWTPCSHWESWW*IRSLSSSLCTS Trigger: TGAAGTACAAAGACTGCTACTCAGGCTTCGTATCAACCACCATGACTCCCAGTGACTACATGGTGTCCAACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011776.8 |