Pregenerated sensors for PIN1RT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074997Ensembl transcript IDs: ENSMUST00000099659.3
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGATGCTCAGTCCCCCTTCCAGTCACTTTAGGAACAGTACTGTGTaGCAGCAGCAGGAAGAGCGTCCATGGGCTTGTGTGGCAGCCGGA | + |
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Preference number: 1 (lower is better) Translates to: GMLSPPSSHFRNSTV*QQQEERPWACVAAG Trigger: TCCGGCTGCCACACAAGCCCATGGACGCTCTTCCTGCTGCTGTCACACAGTACTGTTCCTAAAGTGACTGGAAGGGGGACTGAGCATCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| 3UTR-3UTR CCA 90 bp | CCAGGAGCCTGGCTAGGACAGCCCCCAAATGGGGGCAAACAAGGAACGGGATGCGTCCATGGGCTTGTGTaGCAGCCGGAGCAGGCTGGC | + |
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Preference number: 2 (lower is better) Translates to: PGAWLGQPPNGGKQGTGCVHGLV*QPEQAG Trigger: GCCAGCCTGCTCCGGCTGCCACACAAGCCCATGGAC...GCATCCCGTTCCTTGTTTGCCCCCATTTGGGGGCTGTCCTAGCCAGGCTCCTGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| 3UTR-3UTR CCA 90 bp | GGCCCTCCTGCCTGCCTCCGAGACCTGGAGGATCAAGTCACCTCTGATCCCCTGATTCCCCCAGGAGCCTaGCTAGGACAGCCCCCAAAT | + |
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Preference number: 2 (lower is better) Translates to: GPPACLRDLEDQVTSDPLIPPGA*LGQPPN Trigger: ATTTGGGGGCTGTCCTAGCCAGGCTCCTGGGGGAAT...CAGGGGATCAGAGGTGACTTGATCCTCCAGGTCTCGGAGGCAGGCAGGAGGGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| 3UTR-3UTR TCA 90 bp | CCAGGAGCCTGGCTAGGACAGCCCCCAAATGGGGGCAAACAAGGAACGGGATGCAGGAACAGTACTGTGTaGCAGCAGCAGGAAGAGCGT | + |
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Preference number: 2 (lower is better) Translates to: PGAWLGQPPNGGKQGTGCRNSTV*QQQEER Trigger: ACGCTCTTCCTGCTGCTGTCACACAGTACTGTTCCT...GCATCCCGTTCCTTGTTTGCCCCCATTTGGGGGCTGTCCTAGCCAGGCTCCTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| 3UTR-3UTR CAA 90 bp | CAAACAAGGAACGGGATGCTCAGTCCCCCTTCCAGTCACTTTAGGAACAGTACTAGAGCGTCCATGGGCTaGTGTGGCAGCCGGAGCAGG | + |
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Preference number: 3 (lower is better) Translates to: QTRNGMLSPPSSHFRNSTRASMG*CGSRSR Trigger: CCTGCTCCGGCTGCCACACAAGCCCATGGACGCTCT...AGTACTGTTCCTAAAGTGACTGGAAGGGGGACTGAGCATCCCGTTCCTTGTTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| 3UTR TCA 72 bp | AGTCCCCCTTCCAGTCACTTTAGGAACAGTACTGTGTaGCAGCAGCAGGAAGAGCGTCCATGGGCTTGTGTG | + |
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Preference number: 3 (lower is better) Translates to: SPPSSHFRNSTV*QQQEERPWACV Trigger: CACACAAGCCCATGGACGCTCTTCCTGCTGCTGTCACACAGTACTGTTCCTAAAGTGACTGGAAGGGGGACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| CDS-3UTR CCA 90 bp | CCAGGAGCCTGGCTAGGACAGCCCCCAAATGGGGGCAAACAAGGAACGGGATGCGTGAGCAGCGCACCCTaGCAGGCTCACCCTGGCCGT | + |
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Preference number: 4 (lower is better) Translates to: PGAWLGQPPNGGKQGTGCVSSAP*QAHPGR Trigger: ACGGCCAGGGTGAGCCTGCCAGGGTGCGCTGCTCAC...GCATCCCGTTCCTTGTTTGCCCCCATTTGGGGGCTGTCCTAGCCAGGCTCCTGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| CDS-3UTR TCA 90 bp | TACTGTGTGACAGCAGCAGGAAGAGCGTCCATGGGCTTGTGTGGCAGCCGGAGCCCTCCTTGCTCCTGGTaGTCTTTTCCTGGCGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: YCVTAAGRASMGLCGSRSPPCSW*SFPGAR Trigger: CCTGGCGCCAGGAAAAGATCACCAGGAGCAAGGAGG...GCTCCGGCTGCCACACAAGCCCATGGACGCTCTTCCTGCTGCTGTCACACAGTA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| CDS-3UTR GCA 90 bp | ACTTTAGGAACAGTACTGTGTGACAGCAGCAGGAAGAGCGTCCATGGGCTTGTGGGCCGTTCTTGCTGCTaGCTTCGCTGGGCCGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: TLGTVLCDSSRKSVHGLVGRSCC*LRWAAP Trigger: GGGAGCGGCCCAGCGAAGGCAGCAGCAAGAACGGCC...CACAAGCCCATGGACGCTCTTCCTGCTGCTGTCACACAGTACTGTTCCTAAAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| CDS-3UTR GCA 90 bp | GTCCCCCTTCCAGTCACTTTAGGAACAGTACTGTGTGACAGCAGCAGGAAGAGCCCTGGCCGTTCTTGCTaGTGCCTTCGCTGGGCCGCT | + |
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Preference number: 4 (lower is better) Translates to: VPLPVTLGTVLCDSSRKSPGRSC*CLRWAA Trigger: AGCGGCCCAGCGAAGGCAGCAGCAAGAACGGCCAGG...GCTCTTCCTGCTGCTGTCACACAGTACTGTTCCTAAAGTGACTGGAAGGGGGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| CDS-3UTR CCA 90 bp | GGATGCTCAGTCCCCCTTCCAGTCACTTTAGGAACAGTACTGTGTGACAGCAGCGAGGGCCTCCGAGATTaGCTGTGCTTCACCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: GCSVPLPVTLGTVLCDSSEGLRD*LCFTSR Trigger: CCTGCTGGTGAAGCACAGCCAATCTCGGAGGCCCTC...GCTGCTGTCACACAGTACTGTTCCTAAAGTGACTGGAAGGGGGACTGAGCATCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| CDS-3UTR TCA 90 bp | GGAACGGGATGCTCAGTCCCCCTTCCAGTCACTTTAGGAACAGTACTGTGTGACGATGATATGGATGCCTaGCTCCGTGAACACGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: GTGCSVPLPVTLGTVLCDDDMDA*LREHGP Trigger: GGGCCCGTGTTCACGGAGTCAGGCATCCATATCATC...GTCACACAGTACTGTTCCTAAAGTGACTGGAAGGGGGACTGAGCATCCCGTTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| CDS-3UTR GCA 90 bp | GTCCCCCTTCCAGTCACTTTAGGAACAGTACTGTGTGACAGCAGCAGGAAGAGCCTCCGAGATTGGCTGTaGTTCACCAGCAGGTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: VPLPVTLGTVLCDSSRKSLRDWL*FTSRCE Trigger: CTCACACCTGCTGGTGAAGCACAGCCAATCTCGGAG...GCTCTTCCTGCTGCTGTCACACAGTACTGTTCCTAAAGTGACTGGAAGGGGGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| CDS-3UTR TCA 90 bp | AAAAAGGCCCTCCTGCCTGCCTCCGAGACCTGGAGGATCAAGTCACCTCTGATCAAAGTCCTCCTCTCCTaGCTTAATCTTCCGGATGTA | + |
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Preference number: 4 (lower is better) Translates to: KKALLPASETWRIKSPLIKVLLS*LNLPDV Trigger: TACATCCGGAAGATTAAGTCAGGAGAGGAGGACTTT...GATCAGAGGTGACTTGATCCTCCAGGTCTCGGAGGCAGGCAGGAGGGCCTTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| 3UTR CAA 72 bp | TTGCATCTTGAGGCTGAGTTGCTGTGTGTCTGCTTTTaGCAACTGAACAGAGGAATGGAGCATATAACTAAC | + |
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Preference number: 4 (lower is better) Translates to: LHLEAELLCVCF*QLNRGMEHITN Trigger: GTTAGTTATATGCTCCATTCCTCTGTTCAGTTGCAAAAAGCAGACACACAGCAACTCAGCCTCAAGATGCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| CDS CCA 90 bp | TCCGAGATTGGCTGTGCTTCACCAGCAGGTGTGAGCAGCGCACCCTaGCAGGCTCACCCTGGCCGTTCTTGCTGCTGCCTTCGCTGGGCC | + |
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Preference number: 5 (lower is better) Translates to: SEIGCASPAGVSSAP*QAHPGRSCCCLRWA Trigger: GGCCCAGCGAAGGCAGCAGCAAGAACGGCCAGGGTGAGCCTGCCAGGGTGCGCTGCTCACACCTGCTGGTGAAGCACAGCCAATCTCGGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| CDS TCA 72 bp | GGGCCTCCGAGATTGGCTGTGCTTCACCAGCAGGTGTaGGCAGCGCACCCTGGCAGGCTCACCCTGGCCGTT | + |
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Preference number: 6 (lower is better) Translates to: GPPRLAVLHQQV*AAHPGRLTLAV Trigger: AACGGCCAGGGTGAGCCTGCCAGGGTGCGCTGCTCACACCTGCTGGTGAAGCACAGCCAATCTCGGAGGCCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| CDS GCA 72 bp | TCCTGGCGCCAGGATGAGGGCCTCCGAGATTGGCTGTaGTTCACCAGCAGGTGTGAGCAGCGCACCCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: SWRQDEGLRDWL*FTSRCEQRTLA Trigger: TGCCAGGGTGCGCTGCTCACACCTGCTGGTGAAGCACAGCCAATCTCGGAGGCCCTCATCCTGGCGCCAGGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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| CDS TCA 72 bp | CTCCTTGCTCCTGGTGATCTTTTCCTGGCGCCAGGATaGGGGCCTCCGAGATTGGCTGTGCTTCACCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: LLAPGDLFLAPG*GPPRLAVLHQQ Trigger: CTGCTGGTGAAGCACAGCCAATCTCGGAGGCCCTCATCCTGGCGCCAGGAAAAGATCACCAGGAGCAAGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099659.3 |
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