RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PIMREG (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020808

Ensembl transcript IDs: ENSMUST00000021164.4, ENSMUST00000122871.2, ENSMUST00000125655.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTGCAGTCTGCAAATACCTCCTCTCTTCCTGTGGGGTCCTGGGGGTaGGAAGCAGCAGTGAAAGTGGGTCCTCCGGAATCTCTGCCCTGG +
Preference number: 1 (lower is better)
Translates to: LQSANTSSLPVGSWG*EAAVKVGPPESLPW
Trigger: CCAGGGCAGAGATTCCGGAGGACCCACTTTCACTGCTGCTTCCCACCCCCAGGACCCCACAGGAAGAGAGGAGGTATTTGCAGACTGCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR CCA 90 bp GCTGTCTCCAGGAAGTTCATGGGTTGGGCAGCATGGACATCCTGGTaGCTTGGTGGTTGGACAGAGCCGGCTTCCTGTAGGATGCTTGCT +
Preference number: 1 (lower is better)
Translates to: AVSRKFMGWAAWTSW*LGGWTEPASCRMLA
Trigger: AGCAAGCATCCTACAGGAAGCCGGCTCTGTCCAACCACCAAGCCACCAGGATGTCCATGCTGCCCAACCCATGAACTTCCTGGAGACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR CCA 90 bp GGCCTGGGGATGCTGATAAACCCAATGCTGTCTCCAGGAAGTTCATaGGTTGGGCAGCATGGACATCCTGGTGGCTTGGTGGTTGGACAG +
Preference number: 1 (lower is better)
Translates to: GLGMLINPMLSPGSS*VGQHGHPGGLVVGQ
Trigger: CTGTCCAACCACCAAGCCACCAGGATGTCCATGCTGCCCAACCCATGAACTTCCTGGAGACAGCATTGGGTTTATCAGCATCCCCAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR GCA 90 bp TACATGGAGAAGATAAGTAGGCTCCGTGAGCTGAGGCTTGCAGTCTaGAAATACCTCCTCTCTTCCTGTGGGGTCCTGGGGGTGGGAAGC +
Preference number: 1 (lower is better)
Translates to: YMEKISRLRELRLAV*KYLLSSCGVLGVGS
Trigger: GCTTCCCACCCCCAGGACCCCACAGGAAGAGAGGAGGTATTTGCAGACTGCAAGCCTCAGCTCACGGAGCCTACTTATCTTCTCCATGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR CCA 90 bp AATGCTGTCTCCAGGAAGTTCATGGGTTGGGCAGCATGGACATCCTaGTGGCTTGGTGGTTGGACAGAGCCGGCTTCCTGTAGGATGCTT +
Preference number: 1 (lower is better)
Translates to: NAVSRKFMGWAAWTS*WLGGWTEPASCRML
Trigger: AAGCATCCTACAGGAAGCCGGCTCTGTCCAACCACCAAGCCACCAGGATGTCCATGCTGCCCAACCCATGAACTTCCTGGAGACAGCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR TCA 90 bp CTATCTAGCATCTTCTGGTACATTCCTAATATGGATGGACAACTATaGAGCTGGAGAGCCAGATGGGTGTGCCCGAGTCCAGGAGTCCCC +
Preference number: 1 (lower is better)
Translates to: LSSIFWYIPNMDGQL*SWRARWVCPSPGVP
Trigger: GGGGACTCCTGGACTCGGGCACACCCATCTGGCTCTCCAGCTTCATAGTTGTCCATCCATATTAGGAATGTACCAGAAGATGCTAGATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR-3UTR CCA 90 bp GCTTGCAGTCTGCAAATACCTCCTCTCTTCCTGTGGGGTCCTGGGGGTGGGAAGAGTCCAGGAGTCCCCTaGGGGAACATGGGCAGTTCC +
Preference number: 2 (lower is better)
Translates to: ACSLQIPPLFLWGPGGGKSPGVP*GNMGSS
Trigger: GGAACTGCCCATGTTCCCCCAGGGGACTCCTGGACT...CTTCCCACCCCCAGGACCCCACAGGAAGAGAGGAGGTATTTGCAGACTGCAAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR-3UTR CCA 90 bp GCAGTCTGCAAATACCTCCTCTCTTCCTGTGGGGTCCTGGGGGTGGGAAGCAGCCCGGAATCTCTGCCCTaGGAATACAGGGGGAGGGTT +
Preference number: 2 (lower is better)
Translates to: AVCKYLLSSCGVLGVGSSPESLP*EYRGRV
Trigger: AACCCTCCCCCTGTATTCCCAGGGCAGAGATTCCGG...GCTGCTTCCCACCCCCAGGACCCCACAGGAAGAGAGGAGGTATTTGCAGACTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR-3UTR CCA 90 bp AGGCTCCGTGAGCTGAGGCTTGCAGTCTGCAAATACCTCCTCTCTTCCTGTGGGAGGAAGTTCATGGGTTaGGCAGCATGGACATCCTGG +
Preference number: 2 (lower is better)
Translates to: RLRELRLAVCKYLLSSCGRKFMG*AAWTSW
Trigger: CCAGGATGTCCATGCTGCCCAACCCATGAACTTCCT...CCCACAGGAAGAGAGGAGGTATTTGCAGACTGCAAGCCTCAGCTCACGGAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR-3UTR CCA 90 bp TGGATGGACAACTATGAAGCTGGAGAGCCAGATGGGTGTGCCCGAGTCCAGGAGATAACTCTCAGGCTGTaGCCAGTGGTTACCAGTGGG +
Preference number: 2 (lower is better)
Translates to: WMDNYEAGEPDGCARVQEITLRL*PVVTSG
Trigger: CCCACTGGTAACCACTGGCCACAGCCTGAGAGTTAT...CTCCTGGACTCGGGCACACCCATCTGGCTCTCCAGCTTCATAGTTGTCCATCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR-3UTR CCA 90 bp TGTGGGGTCCTGGGGGTGGGAAGCAGCAGTGAAAGTGGGTCCTCCGGAATCTCTGGTACATTCCTAATATaGATGGACAACTATGAAGCT +
Preference number: 2 (lower is better)
Translates to: CGVLGVGSSSESGSSGISGTFLI*MDNYEA
Trigger: AGCTTCATAGTTGTCCATCCATATTAGGAATGTACC...AGAGATTCCGGAGGACCCACTTTCACTGCTGCTTCCCACCCCCAGGACCCCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR TCA 72 bp CTCTTCCTGTGGGGTCCTGGGGGTGGGAAGCAGCAGTaGAAGTGGGTCCTCCGGAATCTCTGCCCTGGGAAT +
Preference number: 3 (lower is better)
Translates to: LFLWGPGGGKQQ*KWVLRNLCPGN
Trigger: ATTCCCAGGGCAGAGATTCCGGAGGACCCACTTTCACTGCTGCTTCCCACCCCCAGGACCCCACAGGAAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR CCA 72 bp GGTTGGGCAGCATGGACATCCTGGTGGCTTGGTGGTTaGACAGAGCCGGCTTCCTGTAGGATGCTTGCTGTC +
Preference number: 3 (lower is better)
Translates to: GWAAWTSWWLGG*TEPASCRMLAV
Trigger: GACAGCAAGCATCCTACAGGAAGCCGGCTCTGTCCAACCACCAAGCCACCAGGATGTCCATGCTGCCCAACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR CCA 72 bp CAGTCTGCAAATACCTCCTCTCTTCCTGTGGGGTCCTaGGGGTGGGAAGCAGCAGTGAAAGTGGGTCCTCCG +
Preference number: 3 (lower is better)
Translates to: QSANTSSLPVGS*GWEAAVKVGPP
Trigger: CGGAGGACCCACTTTCACTGCTGCTTCCCACCCCCAGGACCCCACAGGAAGAGAGGAGGTATTTGCAGACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR-3UTR CAA 90 bp TGTGGGGTCCTGGGGGTGGGAAGCAGCAGTGAAAGTGGGTCCTCCGGAATCTCTGACTCCTGCAGGTCCTaGGTCCTAGTTTCCAGACTC +
Preference number: 3 (lower is better)
Translates to: CGVLGVGSSSESGSSGISDSCRS*VLVSRL
Trigger: GAGTCTGGAAACTAGGACCAAGGACCTGCAGGAGTC...AGAGATTCCGGAGGACCCACTTTCACTGCTGCTTCCCACCCCCAGGACCCCACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR CCA 72 bp AGGAAGTTCATGGGTTGGGCAGCATGGACATCCTGGTaGCTTGGTGGTTGGACAGAGCCGGCTTCCTGTAGG +
Preference number: 3 (lower is better)
Translates to: RKFMGWAAWTSW*LGGWTEPASCR
Trigger: CCTACAGGAAGCCGGCTCTGTCCAACCACCAAGCCACCAGGATGTCCATGCTGCCCAACCCATGAACTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR CCA 72 bp TCCAGGAAGTTCATGGGTTGGGCAGCATGGACATCCTaGTGGCTTGGTGGTTGGACAGAGCCGGCTTCCTGT +
Preference number: 3 (lower is better)
Translates to: SRKFMGWAAWTS*WLGGWTEPASC
Trigger: ACAGGAAGCCGGCTCTGTCCAACCACCAAGCCACCAGGATGTCCATGCTGCCCAACCCATGAACTTCCTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR CCA 72 bp GCAAATACCTCCTCTCTTCCTGTGGGGTCCTGGGGGTaGGAAGCAGCAGTGAAAGTGGGTCCTCCGGAATCT +
Preference number: 3 (lower is better)
Translates to: ANTSSLPVGSWG*EAAVKVGPPES
Trigger: AGATTCCGGAGGACCCACTTTCACTGCTGCTTCCCACCCCCAGGACCCCACAGGAAGAGAGGAGGTATTTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR TCA 72 bp CTCTGCCCTGGGAATACAGGGGGAGGGTTTGTGGGATaGCTCCTGCAGGTCCTTGGTCCTAGTTTCCAGACT +
Preference number: 3 (lower is better)
Translates to: LCPGNTGGGFVG*LLQVLGPSFQT
Trigger: AGTCTGGAAACTAGGACCAAGGACCTGCAGGAGTCATCCCACAAACCCTCCCCCTGTATTCCCAGGGCAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR GCA 72 bp CTGGGAATACAGGGGGAGGGTTTGTGGGATGACTCCTaGAGGTCCTTGGTCCTAGTTTCCAGACTCAGAACT +
Preference number: 3 (lower is better)
Translates to: LGIQGEGLWDDS*RSLVLVSRLRT
Trigger: AGTTCTGAGTCTGGAAACTAGGACCAAGGACCTGCAGGAGTCATCCCACAAACCCTCCCCCTGTATTCCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR-3UTR CAA 90 bp TGGATGGACAACTATGAAGCTGGAGAGCCAGATGGGTGTGCCCGAGTCCAGGAGATGTTAGTCAAATCCTaGTTAGCAGTGGCCTGGGGA +
Preference number: 3 (lower is better)
Translates to: WMDNYEAGEPDGCARVQEMLVKS*LAVAWG
Trigger: TCCCCAGGCCACTGCTAACAAGGATTTGACTAACAT...CTCCTGGACTCGGGCACACCCATCTGGCTCTCCAGCTTCATAGTTGTCCATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR CCA 72 bp ATGCTGATAAACCCAATGCTGTCTCCAGGAAGTTCATaGGTTGGGCAGCATGGACATCCTGGTGGCTTGGTG +
Preference number: 3 (lower is better)
Translates to: MLINPMLSPGSS*VGQHGHPGGLV
Trigger: CACCAAGCCACCAGGATGTCCATGCTGCCCAACCCATGAACTTCCTGGAGACAGCATTGGGTTTATCAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR TCA 72 bp ATCTTCTGGTACATTCCTAATATGGATGGACAACTATaGAGCTGGAGAGCCAGATGGGTGTGCCCGAGTCCA +
Preference number: 3 (lower is better)
Translates to: IFWYIPNMDGQL*SWRARWVCPSP
Trigger: TGGACTCGGGCACACCCATCTGGCTCTCCAGCTTCATAGTTGTCCATCCATATTAGGAATGTACCAGAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR CCA 72 bp CAGAACTATCTAGCATCTTCTGGTACATTCCTAATATaGATGGACAACTATGAAGCTGGAGAGCCAGATGGG +
Preference number: 3 (lower is better)
Translates to: QNYLASSGTFLI*MDNYEAGEPDG
Trigger: CCCATCTGGCTCTCCAGCTTCATAGTTGTCCATCCATATTAGGAATGTACCAGAAGATGCTAGATAGTTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
CDS-3UTR CCA 90 bp CAGATGGGTGTGCCCGAGTCCAGGAGTCCCCTGGGGGAACATGGGCAGTTCCCAAAGACCTTGCTGCTCTaGCTCTGGACTTTCCAGGCG +
Preference number: 4 (lower is better)
Translates to: QMGVPESRSPLGEHGQFPKTLLL*LWTFQA
Trigger: CGCCTGGAAAGTCCAGAGCCAGAGCAGCAAGGTCTT...TGGGAACTGCCCATGTTCCCCCAGGGGACTCCTGGACTCGGGCACACCCATCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
CDS-3UTR TCA 90 bp AGGCTCCGTGAGCTGAGGCTTGCAGTCTGCAAATACCTCCTCTCTTCCTGTGGGCAGACTGGGTGGTGGTaGCCCTCTGTCTTTCTGGGC +
Preference number: 4 (lower is better)
Translates to: RLRELRLAVCKYLLSSCGQTGWW*PSVFLG
Trigger: GCCCAGAAAGACAGAGGGTCACCACCACCCAGTCTG...CCCACAGGAAGAGAGGAGGTATTTGCAGACTGCAAGCCTCAGCTCACGGAGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
CDS-3UTR TCA 90 bp TCTCTTCCTGTGGGGTCCTGGGGGTGGGAAGCAGCAGTGAAAGTGGGTCCTCCGCACTCTCTTCAGCCTTaGTGGCTCTGTCCAGCCTTT +
Preference number: 4 (lower is better)
Translates to: SLPVGSWGWEAAVKVGPPHSLQP*WLCPAF
Trigger: AAAGGCTGGACAGAGCCATCAAGGCTGAAGAGAGTG...CGGAGGACCCACTTTCACTGCTGCTTCCCACCCCCAGGACCCCACAGGAAGAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
CDS-3UTR GCA 90 bp GGGTTGGGCAGCATGGACATCCTGGTGGCTTGGTGGTTGGACAGAGCCGGCTTCTCCTTTGGAATTGTCTaGACAGGGAGCCCAAGGGAC +
Preference number: 4 (lower is better)
Translates to: GLGSMDILVAWWLDRAGFSFGIV*TGSPRD
Trigger: GTCCCTTGGGCTCCCTGTGCAGACAATTCCAAAGGA...GAAGCCGGCTCTGTCCAACCACCAAGCCACCAGGATGTCCATGCTGCCCAACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
CDS-3UTR CCA 90 bp TGTGGGGTCCTGGGGGTGGGAAGCAGCAGTGAAAGTGGGTCCTCCGGAATCTCTAGCCGAGTGTTCTTCTaGCTCAGACTGGGTGGTGGT +
Preference number: 4 (lower is better)
Translates to: CGVLGVGSSSESGSSGISSRVFF*LRLGGG
Trigger: ACCACCACCCAGTCTGAGCCAGAAGAACACTCGGCT...AGAGATTCCGGAGGACCCACTTTCACTGCTGCTTCCCACCCCCAGGACCCCACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
CDS-3UTR CCA 90 bp TGCAGTCTGCAAATACCTCCTCTCTTCCTGTGGGGTCCTGGGGGTGGGAAGCAGTCTTCTGGCTCAGACTaGGTGGTGGTGACCCTCTGT +
Preference number: 4 (lower is better)
Translates to: CSLQIPPLFLWGPGGGKQSSGSD*VVVTLC
Trigger: ACAGAGGGTCACCACCACCCAGTCTGAGCCAGAAGA...CTGCTTCCCACCCCCAGGACCCCACAGGAAGAGAGGAGGTATTTGCAGACTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
3UTR CAA 72 bp TCCGGAATCTCTGCCCTGGGAATACAGGGGGAGGGTTaGTGGGATGACTCCTGCAGGTCCTTGGTCCTAGTT +
Preference number: 4 (lower is better)
Translates to: SGISALGIQGEG*WDDSCRSLVLV
Trigger: AACTAGGACCAAGGACCTGCAGGAGTCATCCCACAAACCCTCCCCCTGTATTCCCAGGGCAGAGATTCCGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
CDS-3UTR CAA 90 bp GGGTTGGGCAGCATGGACATCCTGGTGGCTTGGTGGTTGGACAGAGCCGGCTTCTGCAGCCTGAAGACCTaGCTGCTCTGGCTCTGGACT +
Preference number: 5 (lower is better)
Translates to: GLGSMDILVAWWLDRAGFCSLKT*LLWLWT
Trigger: AGTCCAGAGCCAGAGCAGCAAGGTCTTCAGGCTGCA...GAAGCCGGCTCTGTCCAACCACCAAGCCACCAGGATGTCCATGCTGCCCAACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
CDS-3UTR CAA 90 bp GGGTTGGGCAGCATGGACATCCTGGTGGCTTGGTGGTTGGACAGAGCCGGCTTCGGCTCTGTCCAGCCTTaGAGACAGCTTCTGAAGATG +
Preference number: 5 (lower is better)
Translates to: GLGSMDILVAWWLDRAGFGSVQP*RQLLKM
Trigger: CATCTTCAGAAGCTGTCTCAAAGGCTGGACAGAGCC...GAAGCCGGCTCTGTCCAACCACCAAGCCACCAGGATGTCCATGCTGCCCAACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
CDS-3UTR CAA 90 bp TGGGTTGGGCAGCATGGACATCCTGGTGGCTTGGTGGTTGGACAGAGCCGGCTTCCACTCTCTTCAGCCTaGATGGCTCTGTCCAGCCTT +
Preference number: 5 (lower is better)
Translates to: WVGQHGHPGGLVVGQSRLPLSSA*MALSSL
Trigger: AAGGCTGGACAGAGCCATCAAGGCTGAAGAGAGTGG...AAGCCGGCTCTGTCCAACCACCAAGCCACCAGGATGTCCATGCTGCCCAACCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
CDS TCA 72 bp TGTCTGCACAGGGAGCCCAAGGGACCGGTCTCCGGATaGCCCCCAGCAGACCGGGTCACCTCCTTCTTCTCT +
Preference number: 6 (lower is better)
Translates to: CLHREPKGPVSG*PPADRVTSFFS
Trigger: AGAGAAGAAGGAGGTGACCCGGTCTGCTGGGGGTCATCCGGAGACCGGTCCCTTGGGCTCCCTGTGCAGACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021164.4
ENSMUST00000122871.2
ENSMUST00000125655.2
CDS CAA 90 bp ATCTGGCCAGAGAGGCGAAGATGTCCCCCGACTCTAGCATCCCGGTaGGCCCTGCATAGCCGAGTGTTCTTCTGGCTCAGACTGGGTGGT +
Preference number: 6 (lower is better)
Translates to: IWPERRRCPPTLASR*ALHSRVFFWLRLGG
Trigger: ACCACCCAGTCTGAGCCAGAAGAACACTCGGCTATGCAGGGCCAACCGGGATGCTAGAGTCGGGGGACATCTTCGCCTCTCTGGCCAGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
CDS CAA 72 bp GAGAGGCGAAGATGTCCCCCGACTCTAGCATCCCGGTaGGCCCTGCATAGCCGAGTGTTCTTCTGGCTCAGA +
Preference number: 6 (lower is better)
Translates to: ERRRCPPTLASR*ALHSRVFFWLR
Trigger: TCTGAGCCAGAAGAACACTCGGCTATGCAGGGCCAACCGGGATGCTAGAGTCGGGGGACATCTTCGCCTCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
CDS CCA 72 bp TGGCTCAGACTGGGTGGTGGTGACCCTCTGTCTTTCTaGGCTCCTCGCTTCCTTCTCACTTTCACCTGTGTC +
Preference number: 6 (lower is better)
Translates to: WLRLGGGDPLSF*APRFLLTFTCV
Trigger: GACACAGGTGAAAGTGAGAAGGAAGCGAGGAGCCCAGAAAGACAGAGGGTCACCACCACCCAGTCTGAGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021164.4
CDS GCA 72 bp TCTTCTCTAGCTGTTCCTCCTTTAGGAGTGATCGTCTaGGCACAGAGGTCCTCATGCCCTGCCACTGAGACG +
Preference number: 6 (lower is better)
Translates to: SSLAVPPLGVIV*AQRSSCPATET
Trigger: CGTCTCAGTGGCAGGGCATGAGGACCTCTGTGCGCAGACGATCACTCCTAAAGGAGGAACAGCTAGAGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021164.4
ENSMUST00000122871.2
ENSMUST00000125655.2