Pregenerated sensors for PIM3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035828Ensembl transcript IDs: ENSMUST00000042818.11
Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCGGGGAGGCAGACGGGCAGCAGTGGCCCAGCGTTGCATTGCTTGTaGAGACATGCCCAGATGAACACCAGGAGACTGGAGGGTTGGAGG | + |
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Preference number: 1 (lower is better) Translates to: PGRQTGSSGPALHCL*RHAQMNTRRLEGWR Trigger: CCTCCAACCCTCCAGTCTCCTGGTGTTCATCTGGGCATGTCTGCACAAGCAATGCAACGCTGGGCCACTGCTGCCCGTCTGCCTCCCCGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR GCA 90 bp | GCAGACGGGCAGCAGTGGCCCAGCGTTGCATTGCTTGTGCAGACATaGCCAGATGAACACCAGGAGACTGGAGGGTTGGAGGTGGGCACC | + |
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Preference number: 1 (lower is better) Translates to: ADGQQWPSVALLVQT*PDEHQETGGLEVGT Trigger: GGTGCCCACCTCCAACCCTCCAGTCTCCTGGTGTTCATCTGGGCATGTCTGCACAAGCAATGCAACGCTGGGCCACTGCTGCCCGTCTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR GCA 90 bp | GGCACCACAGGGCGCTCCATGTCAAACACACTTGGTCAGGAAGGCTaGCTCCTGAGATGGAGCAGCAGGGTCGGGATCTCTGGTTCAAGT | + |
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Preference number: 1 (lower is better) Translates to: GTTGRSMSNTLGQEG*LLRWSSRVGISGSS Trigger: ACTTGAACCAGAGATCCCGACCCTGCTGCTCCATCTCAGGAGGCAGCCTTCCTGACCAAGTGTGTTTGACATGGAGCGCCCTGTGGTGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR TCA 90 bp | CAGGGCGCTCCATGTCAAACACACTTGGTCAGGAAGGCTGCCTCCTaGGATGGAGCAGCAGGGTCGGGATCTCTGGTTCAAGTATCCACC | + |
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Preference number: 1 (lower is better) Translates to: QGAPCQTHLVRKAAS*DGAAGSGSLVQVST Trigger: GGTGGATACTTGAACCAGAGATCCCGACCCTGCTGCTCCATCTCAGGAGGCAGCCTTCCTGACCAAGTGTGTTTGACATGGAGCGCCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CCA 90 bp | CGCTCCATGTCAAACACACTTGGTCAGGAAGGCTGCCTCCTGAGATaGAGCAGCAGGGTCGGGATCTCTGGTTCAAGTATCCACCCAGGG | + |
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Preference number: 1 (lower is better) Translates to: RSMSNTLGQEGCLLR*SSRVGISGSSIHPG Trigger: CCCTGGGTGGATACTTGAACCAGAGATCCCGACCCTGCTGCTCCATCTCAGGAGGCAGCCTTCCTGACCAAGTGTGTTTGACATGGAGCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CCA 90 bp | TGCAGACATGCCCAGATGAACACCAGGAGACTGGAGGGTTGGAGGTaGGCACCACAGGGCGCTCCATGTCAAACACACTTGGTCAGGAAG | + |
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Preference number: 1 (lower is better) Translates to: CRHAQMNTRRLEGWR*APQGAPCQTHLVRK Trigger: CTTCCTGACCAAGTGTGTTTGACATGGAGCGCCCTGTGGTGCCCACCTCCAACCCTCCAGTCTCCTGGTGTTCATCTGGGCATGTCTGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CCA 90 bp | TGCTTGTGCAGACATGCCCAGATGAACACCAGGAGACTGGAGGGTTaGAGGTGGGCACCACAGGGCGCTCCATGTCAAACACACTTGGTC | + |
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Preference number: 1 (lower is better) Translates to: CLCRHAQMNTRRLEG*RWAPQGAPCQTHLV Trigger: GACCAAGTGTGTTTGACATGGAGCGCCCTGTGGTGCCCACCTCCAACCCTCCAGTCTCCTGGTGTTCATCTGGGCATGTCTGCACAAGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CCA 90 bp | AAGTATCCACCCAGGGCAGGACCTTGCTTAGCCCGCAGCCATCTTTaGACAGAAGAGCTCAAGAAAACCCAGGCCCTGTGGAGCAGCGTT | + |
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Preference number: 1 (lower is better) Translates to: KYPPRAGPCLARSHL*TEELKKTQALWSSV Trigger: AACGCTGCTCCACAGGGCCTGGGTTTTCTTGAGCTCTTCTGTCCAAAGATGGCTGCGGGCTAAGCAAGGTCCTGCCCTGGGTGGATACTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR GCA 90 bp | CAGGGTCGGGATCTCTGGTTCAAGTATCCACCCAGGGCAGGACCTTaGTTAGCCCGCAGCCATCTTTGGACAGAAGAGCTCAAGAAAACC | + |
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Preference number: 1 (lower is better) Translates to: QGRDLWFKYPPRAGP*LARSHLWTEELKKT Trigger: GGTTTTCTTGAGCTCTTCTGTCCAAAGATGGCTGCGGGCTAAGCAAGGTCCTGCCCTGGGTGGATACTTGAACCAGAGATCCCGACCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CCA 90 bp | CTGTGGACTCAACAGCCACATTTGACTTTCAACACCCCAGGGGCCTaGAGAAGGTGGTTGCTTGGAGGAACCTCAGCAAATAAATTAAAC | + |
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Preference number: 1 (lower is better) Translates to: LWTQQPHLTFNTPGA*RRWLLGGTSANKLN Trigger: GTTTAATTTATTTGCTGAGGTTCCTCCAAGCAACCACCTTCTCCAGGCCCCTGGGGTGTTGAAAGTCAAATGTGGCTGTTGAGTCCACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR-3UTR CCA 90 bp | GGGAGGCAGACGGGCAGCAGTGGCCCAGCGTTGCATTGCTTGTGCAGACATGCCCTGGAGGGTTGGAGGTaGGCACCACAGGGCGCTCCA | + |
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Preference number: 2 (lower is better) Translates to: GRQTGSSGPALHCLCRHALEGWR*APQGAP Trigger: TGGAGCGCCCTGTGGTGCCCACCTCCAACCCTCCAG...GGCATGTCTGCACAAGCAATGCAACGCTGGGCCACTGCTGCCCGTCTGCCTCCC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR-3UTR CCA 90 bp | GTGCCGGGGAGGCAGACGGGCAGCAGTGGCCCAGCGTTGCATTGCTTGTGCAGAAGGAGACTGGAGGGTTaGAGGTGGGCACCACAGGGC | + |
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Preference number: 2 (lower is better) Translates to: VPGRQTGSSGPALHCLCRRRLEG*RWAPQG Trigger: GCCCTGTGGTGCCCACCTCCAACCCTCCAGTCTCCT...TCTGCACAAGCAATGCAACGCTGGGCCACTGCTGCCCGTCTGCCTCCCCGGCAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CAA 90 bp | AGCCGTGCCGTGCCGGGGAGGCAGACGGGCAGCAGTGGCCCAGCGTaGCATTGCTTGTGCAGACATGCCCAGATGAACACCAGGAGACTG | + |
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Preference number: 2 (lower is better) Translates to: SRAVPGRQTGSSGPA*HCLCRHAQMNTRRL Trigger: CAGTCTCCTGGTGTTCATCTGGGCATGTCTGCACAAGCAATGCAACGCTGGGCCACTGCTGCCCGTCTGCCTCCCCGGCACGGCACGGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR-3UTR CCA 90 bp | GTGCCGGGGAGGCAGACGGGCAGCAGTGGCCCAGCGTTGCATTGCTTGTGCAGACAGGGTCGGGATCTCTaGTTCAAGTATCCACCCAGG | + |
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Preference number: 2 (lower is better) Translates to: VPGRQTGSSGPALHCLCRQGRDL*FKYPPR Trigger: CCTGGGTGGATACTTGAACCAGAGATCCCGACCCTG...TCTGCACAAGCAATGCAACGCTGGGCCACTGCTGCCCGTCTGCCTCCCCGGCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR-3UTR CCA 90 bp | GTTGGGGAACTCCTCCAGGTGCAGGAATTAGGATGGGGGTCTGTGGACTCAACAGGCTGCCTCCTGAGATaGAGCAGCAGGGTCGGGATC | + |
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Preference number: 2 (lower is better) Translates to: VGELLQVQELGWGSVDSTGCLLR*SSRVGI Trigger: GATCCCGACCCTGCTGCTCCATCTCAGGAGGCAGCC...TGTTGAGTCCACAGACCCCCATCCTAATTCCTGCACCTGGAGGAGTTCCCCAAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR-3UTR CCA 90 bp | AATTTAAACCCCTCCCCAGCGCAGAGTGCTCAGGGTGACAGGGTCTCCCACTCCAACACCCCAGGGGCCTaGAGAAGGTGGTTGCTTGGA | + |
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Preference number: 2 (lower is better) Translates to: NLNPSPAQSAQGDRVSHSNTPGA*RRWLLG Trigger: TCCAAGCAACCACCTTCTCCAGGCCCCTGGGGTGTT...GGAGTGGGAGACCCTGTCACCCTGAGCACTCTGCGCTGGGGAGGGGTTTAAATT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CAA 90 bp | CCGGTGCCGAGAGCAAAGGTCACCAGGGGTCAGAGGTCACTGCTTTaGCAGCAGACATCCCAGGCAGAAAGTGTTCAATTCTGGGAGAGC | + |
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Preference number: 2 (lower is better) Translates to: PVPRAKVTRGQRSLL*QQTSQAESVQFWES Trigger: GCTCTCCCAGAATTGAACACTTTCTGCCTGGGATGTCTGCTGCAAAAGCAGTGACCTCTGACCCCTGGTGACCTTTGCTCTCGGCACCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CAA 90 bp | TTGCTTGTGCAGACATGCCCAGATGAACACCAGGAGACTGGAGGGTaGGAGGTGGGCACCACAGGGCGCTCCATGTCAAACACACTTGGT | + |
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Preference number: 2 (lower is better) Translates to: LLVQTCPDEHQETGG*EVGTTGRSMSNTLG Trigger: ACCAAGTGTGTTTGACATGGAGCGCCCTGTGGTGCCCACCTCCAACCCTCCAGTCTCCTGGTGTTCATCTGGGCATGTCTGCACAAGCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR-3UTR CCA 90 bp | GTTGGGGAACTCCTCCAGGTGCAGGAATTAGGATGGGGGTCTGTGGACTCAACAGGGGCCTGGAGAAGGTaGTTGCTTGGAGGAACCTCA | + |
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Preference number: 2 (lower is better) Translates to: VGELLQVQELGWGSVDSTGAWRR*LLGGTS Trigger: TGAGGTTCCTCCAAGCAACCACCTTCTCCAGGCCCC...TGTTGAGTCCACAGACCCCCATCCTAATTCCTGCACCTGGAGGAGTTCCCCAAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CAA 90 bp | GCAGGGTCGGGATCTCTGGTTCAAGTATCCACCCAGGGCAGGACCTaGCTTAGCCCGCAGCCATCTTTGGACAGAAGAGCTCAAGAAAAC | + |
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Preference number: 2 (lower is better) Translates to: AGSGSLVQVSTQGRT*LSPQPSLDRRAQEN Trigger: GTTTTCTTGAGCTCTTCTGTCCAAAGATGGCTGCGGGCTAAGCAAGGTCCTGCCCTGGGTGGATACTTGAACCAGAGATCCCGACCCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR-3UTR GCA 90 bp | CGCAGAGTGCTCAGGGTGACAGGGTCTCCCACTCCCCTTAAATTAGCCACTGTAGGGGTCAGAGGTCACTaGTTTTGCAGCAGACATCCC | + |
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Preference number: 2 (lower is better) Translates to: RRVLRVTGSPTPLKLATVGVRGH*FCSRHP Trigger: GGGATGTCTGCTGCAAAAGCAGTGACCTCTGACCCC...TACAGTGGCTAATTTAAGGGGAGTGGGAGACCCTGTCACCCTGAGCACTCTGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR-3UTR CCA 90 bp | GTATCCACCCAGGGCAGGACCTTGCTTAGCCCGCAGCCATCTTTGGACAGAAGAAAAACCCAGGCCCTGTaGAGCAGCGTTCAAAAAGGC | + |
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Preference number: 2 (lower is better) Translates to: VSTQGRTLLSPQPSLDRRKTQAL*SSVQKG Trigger: GCCTTTTTGAACGCTGCTCCACAGGGCCTGGGTTTT...TCTTCTGTCCAAAGATGGCTGCGGGCTAAGCAAGGTCCTGCCCTGGGTGGATAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR-3UTR GCA 90 bp | CGCAGAGTGCTCAGGGTGACAGGGTCTCCCACTCCCCTTAAATTAGCCACTGTACCTGGAGAAGGTGGTTaGTTGGAGGAACCTCAGCAA | + |
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Preference number: 2 (lower is better) Translates to: RRVLRVTGSPTPLKLATVPGEGG*LEEPQQ Trigger: TTGCTGAGGTTCCTCCAAGCAACCACCTTCTCCAGG...TACAGTGGCTAATTTAAGGGGAGTGGGAGACCCTGTCACCCTGAGCACTCTGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR-3UTR CCA 90 bp | CGCAGAGTGCTCAGGGTGACAGGGTCTCCCACTCCCCTTAAATTAGCCACTGTACATGTCAAACACACTTaGTCAGGAAGGCTGCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: RRVLRVTGSPTPLKLATVHVKHT*SGRLPP Trigger: AGGAGGCAGCCTTCCTGACCAAGTGTGTTTGACATG...TACAGTGGCTAATTTAAGGGGAGTGGGAGACCCTGTCACCCTGAGCACTCTGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CCA 72 bp | GAGCCGTGCCGTGCCGGGGAGGCAGACGGGCAGCAGTaGCCCAGCGTTGCATTGCTTGTGCAGACATGCCCA | + |
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Preference number: 3 (lower is better) Translates to: EPCRAGEADGQQ*PSVALLVQTCP Trigger: TGGGCATGTCTGCACAAGCAATGCAACGCTGGGCCACTGCTGCCCGTCTGCCTCCCCGGCACGGCACGGCTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR-3UTR CAA 90 bp | AATTTAAACCCCTCCCCAGCGCAGAGTGCTCAGGGTGACAGGGTCTCCCACTCCCAGGAGACTGGAGGGTaGGAGGTGGGCACCACAGGG | + |
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Preference number: 3 (lower is better) Translates to: NLNPSPAQSAQGDRVSHSQETGG*EVGTTG Trigger: CCCTGTGGTGCCCACCTCCAACCCTCCAGTCTCCTG...GGAGTGGGAGACCCTGTCACCCTGAGCACTCTGCGCTGGGGAGGGGTTTAAATT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR GCA 72 bp | GGGAGGCAGACGGGCAGCAGTGGCCCAGCGTTGCATTaGTTGTGCAGACATGCCCAGATGAACACCAGGAGA | + |
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Preference number: 3 (lower is better) Translates to: GRQTGSSGPALH*LCRHAQMNTRR Trigger: TCTCCTGGTGTTCATCTGGGCATGTCTGCACAAGCAATGCAACGCTGGGCCACTGCTGCCCGTCTGCCTCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CCA 72 bp | GGTGGGCACCACAGGGCGCTCCATGTCAAACACACTTaGTCAGGAAGGCTGCCTCCTGAGATGGAGCAGCAG | + |
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Preference number: 3 (lower is better) Translates to: GGHHRALHVKHT*SGRLPPEMEQQ Trigger: CTGCTGCTCCATCTCAGGAGGCAGCCTTCCTGACCAAGTGTGTTTGACATGGAGCGCCCTGTGGTGCCCACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR GCA 72 bp | GGGCGCTCCATGTCAAACACACTTGGTCAGGAAGGCTaGCTCCTGAGATGGAGCAGCAGGGTCGGGATCTCT | + |
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Preference number: 3 (lower is better) Translates to: GRSMSNTLGQEG*LLRWSSRVGIS Trigger: AGAGATCCCGACCCTGCTGCTCCATCTCAGGAGGCAGCCTTCCTGACCAAGTGTGTTTGACATGGAGCGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CCA 72 bp | CCCAGGGCAGGACCTTGCTTAGCCCGCAGCCATCTTTaGACAGAAGAGCTCAAGAAAACCCAGGCCCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: PRAGPCLARSHL*TEELKKTQALW Trigger: CCACAGGGCCTGGGTTTTCTTGAGCTCTTCTGTCCAAAGATGGCTGCGGGCTAAGCAAGGTCCTGCCCTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CCA 72 bp | GCCCAGATGAACACCAGGAGACTGGAGGGTTGGAGGTaGGCACCACAGGGCGCTCCATGTCAAACACACTTG | + |
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Preference number: 3 (lower is better) Translates to: AQMNTRRLEGWR*APQGAPCQTHL Trigger: CAAGTGTGTTTGACATGGAGCGCCCTGTGGTGCCCACCTCCAACCCTCCAGTCTCCTGGTGTTCATCTGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR GCA 72 bp | CAGCAGTGGCCCAGCGTTGCATTGCTTGTGCAGACATaGCCAGATGAACACCAGGAGACTGGAGGGTTGGAG | + |
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Preference number: 3 (lower is better) Translates to: QQWPSVALLVQT*PDEHQETGGLE Trigger: CTCCAACCCTCCAGTCTCCTGGTGTTCATCTGGGCATGTCTGCACAAGCAATGCAACGCTGGGCCACTGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CCA 72 bp | CTGCCTCCTGAGATGGAGCAGCAGGGTCGGGATCTCTaGTTCAAGTATCCACCCAGGGCAGGACCTTGCTTA | + |
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Preference number: 3 (lower is better) Translates to: LPPEMEQQGRDL*FKYPPRAGPCL Trigger: TAAGCAAGGTCCTGCCCTGGGTGGATACTTGAACCAGAGATCCCGACCCTGCTGCTCCATCTCAGGAGGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CCA 72 bp | AGACATGCCCAGATGAACACCAGGAGACTGGAGGGTTaGAGGTGGGCACCACAGGGCGCTCCATGTCAAACA | + |
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Preference number: 3 (lower is better) Translates to: RHAQMNTRRLEG*RWAPQGAPCQT Trigger: TGTTTGACATGGAGCGCCCTGTGGTGCCCACCTCCAACCCTCCAGTCTCCTGGTGTTCATCTGGGCATGTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR-3UTR CAA 90 bp | GTTGGGGAACTCCTCCAGGTGCAGGAATTAGGATGGGGGTCTGTGGACTCAACAGCCTGGAGAAGGTGGTaGCTTGGAGGAACCTCAGCA | + |
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Preference number: 3 (lower is better) Translates to: VGELLQVQELGWGSVDSTAWRRW*LGGTSA Trigger: TGCTGAGGTTCCTCCAAGCAACCACCTTCTCCAGGC...TGTTGAGTCCACAGACCCCCATCCTAATTCCTGCACCTGGAGGAGTTCCCCAAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR TCA 72 bp | CCATGTCAAACACACTTGGTCAGGAAGGCTGCCTCCTaGGATGGAGCAGCAGGGTCGGGATCTCTGGTTCAA | + |
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Preference number: 3 (lower is better) Translates to: PCQTHLVRKAAS*DGAAGSGSLVQ Trigger: TTGAACCAGAGATCCCGACCCTGCTGCTCCATCTCAGGAGGCAGCCTTCCTGACCAAGTGTGTTTGACATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR GCA 72 bp | GATCTCTGGTTCAAGTATCCACCCAGGGCAGGACCTTaGTTAGCCCGCAGCCATCTTTGGACAGAAGAGCTC | + |
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Preference number: 3 (lower is better) Translates to: DLWFKYPPRAGP*LARSHLWTEEL Trigger: GAGCTCTTCTGTCCAAAGATGGCTGCGGGCTAAGCAAGGTCCTGCCCTGGGTGGATACTTGAACCAGAGATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CCA 72 bp | TCAAACACACTTGGTCAGGAAGGCTGCCTCCTGAGATaGAGCAGCAGGGTCGGGATCTCTGGTTCAAGTATC | + |
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Preference number: 3 (lower is better) Translates to: SNTLGQEGCLLR*SSRVGISGSSI Trigger: GATACTTGAACCAGAGATCCCGACCCTGCTGCTCCATCTCAGGAGGCAGCCTTCCTGACCAAGTGTGTTTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR-3UTR CAA 90 bp | CGCAGAGTGCTCAGGGTGACAGGGTCTCCCACTCCCCTTAAATTAGCCACTGTAACTCAACAGCCACATTaGACTTTCAACACCCCAGGG | + |
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Preference number: 3 (lower is better) Translates to: RRVLRVTGSPTPLKLATVTQQPH*TFNTPG Trigger: CCCTGGGGTGTTGAAAGTCAAATGTGGCTGTTGAGT...TACAGTGGCTAATTTAAGGGGAGTGGGAGACCCTGTCACCCTGAGCACTCTGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CCA 72 bp | CAACAGCCACATTTGACTTTCAACACCCCAGGGGCCTaGAGAAGGTGGTTGCTTGGAGGAACCTCAGCAAAT | + |
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Preference number: 3 (lower is better) Translates to: QQPHLTFNTPGA*RRWLLGGTSAN Trigger: ATTTGCTGAGGTTCCTCCAAGCAACCACCTTCTCCAGGCCCCTGGGGTGTTGAAAGTCAAATGTGGCTGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CCA 72 bp | CATTTGACTTTCAACACCCCAGGGGCCTGGAGAAGGTaGTTGCTTGGAGGAACCTCAGCAAATAAATTAAAC | + |
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Preference number: 3 (lower is better) Translates to: HLTFNTPGAWRR*LLGGTSANKLN Trigger: GTTTAATTTATTTGCTGAGGTTCCTCCAAGCAACCACCTTCTCCAGGCCCCTGGGGTGTTGAAAGTCAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR GCA 90 bp | CCCGGTGCCGAGAGCAAAGGTCACCAGGGGTCAGAGGTCACTGCTTTTGCAGCACGTCGGCGATGCGGCTaGCCGCGTAGACCGTGCCGA | + |
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Preference number: 4 (lower is better) Translates to: PGAESKGHQGSEVTAFAARRRCG*PRRPCR Trigger: TCGGCACGGTCTACGCGGGCAGCCGCATCGCCGACG...TGCTGCAAAAGCAGTGACCTCTGACCCCTGGTGACCTTTGCTCTCGGCACCGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR GCA 90 bp | CCCGGTGCCGAGAGCAAAGGTCACCAGGGGTCAGAGGTCACTGCTTTTGCAGCAGGAGTCCGTCGGCGATaGGGCTGCCCGCGTAGACCG | + |
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Preference number: 4 (lower is better) Translates to: PGAESKGHQGSEVTAFAAGVRRR*GCPRRP Trigger: CGGTCTACGCGGGCAGCCGCATCGCCGACGGACTCC...TGCTGCAAAAGCAGTGACCTCTGACCCCTGGTGACCTTTGCTCTCGGCACCGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR TCA 90 bp | GCGTTGCATTGCTTGTGCAGACATGCCCAGATGAACACCAGGAGACTGGAGGGTAGTCCAGCAAGCGGATaGCGCCGCGCGCGCCGCCCG | + |
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Preference number: 4 (lower is better) Translates to: ALHCLCRHAQMNTRRLEGSPASG*RRARRP Trigger: CGGGCGGCGCGCGCGGCGTCATCCGCTTGCTGGACT...ACCCTCCAGTCTCCTGGTGTTCATCTGGGCATGTCTGCACAAGCAATGCAACGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR TCA 90 bp | GGAAACAGGCCCGGTGCCGAGAGCAAAGGTCACCAGGGGTCAGAGGTCACTGCTCCGAGCCGAAGTCGATaGGCTTCAGCTCTCCCGAGC | + |
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Preference number: 4 (lower is better) Translates to: GNRPGAESKGHQGSEVTAPSRSR*ASALPS Trigger: GCTCGGGAGAGCTGAAGCTCATCGACTTCGGCTCGG...AGCAGTGACCTCTGACCCCTGGTGACCTTTGCTCTCGGCACCGGGCCTGTTTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR GCA 90 bp | AATTTAAACCCCTCCCCAGCGCAGAGTGCTCAGGGTGACAGGGTCTCCCACTCCCCAGGCCCGCAGAGGTaGGCCAGGGAGCCGAACTTG | + |
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Preference number: 4 (lower is better) Translates to: NLNPSPAQSAQGDRVSHSPGPQR*AREPNL Trigger: CAAGTTCGGCTCCCTGGCGCACCTCTGCGGGCCTGG...GGAGTGGGAGACCCTGTCACCCTGAGCACTCTGCGCTGGGGAGGGGTTTAAATT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR GCA 90 bp | TGCTTGTGCAGACATGCCCAGATGAACACCAGGAGACTGGAGGGTTGGAGGTGGCCGCCGCGCCCACCTTaGGCAGCAGCACCACCTCCA | + |
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Preference number: 4 (lower is better) Translates to: CLCRHAQMNTRRLEGWRWPPRPP*AAAPPP Trigger: TGGAGGTGGTGCTGCTGCGCAAGGTGGGCGCGGCGG...CCACCTCCAACCCTCCAGTCTCCTGGTGTTCATCTGGGCATGTCTGCACAAGCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR CCA 90 bp | GGGAGGCAGACGGGCAGCAGTGGCCCAGCGTTGCATTGCTTGTGCAGACATGCCACGACCCCACAATTGTaGCAGTGCCGCACAGCGGCA | + |
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Preference number: 4 (lower is better) Translates to: GRQTGSSGPALHCLCRHATTPQL*QCRTAA Trigger: TGCCGCTGTGCGGCACTGCCACAATTGTGGGGTCGT...GGCATGTCTGCACAAGCAATGCAACGCTGGGCCACTGCTGCCCGTCTGCCTCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR TCA 90 bp | AATTTAAACCCCTCCCCAGCGCAGAGTGCTCAGGGTGACAGGGTCTCCCACTCCTGTAGACCGTGTCCTTaGGCACCGCGCCCGAGCCGA | + |
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Preference number: 4 (lower is better) Translates to: NLNPSPAQSAQGDRVSHSCRPCP*APRPSR Trigger: TCGGCTCGGGCGCGGTGCTCAAGGACACGGTCTACA...GGAGTGGGAGACCCTGTCACCCTGAGCACTCTGCGCTGGGGAGGGGTTTAAATT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR CCA 90 bp | CAGGAAGGCTGCCTCCTGAGATGGAGCAGCAGGGTCGGGATCTCTGGTTCAAGTATCTTCACTGGGAGGTaGTCCACGCCGCCAGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: QEGCLLRWSSRVGISGSSIFTGR*STPPGP Trigger: CGGGCCTGGCGGCGTGGACCACCTCCCAGTGAAGAT...ACTTGAACCAGAGATCCCGACCCTGCTGCTCCATCTCAGGAGGCAGCCTTCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CAA 72 bp | GGGGAGGCAGACGGGCAGCAGTGGCCCAGCGTTGCATaGCTTGTGCAGACATGCCCAGATGAACACCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: GEADGQQWPSVA*LVQTCPDEHQE Trigger: CTCCTGGTGTTCATCTGGGCATGTCTGCACAAGCAATGCAACGCTGGGCCACTGCTGCCCGTCTGCCTCCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR GCA 90 bp | GTATCCACCCAGGGCAGGACCTTGCTTAGCCCGCAGCCATCTTTGGACAGAAGAGTCGAAGAGGTCCTGTaGCGGCTCGGGTCGCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: VSTQGRTLLSPQPSLDRRVEEVL*RLGSLQ Trigger: CTGGAGCGACCCGAGCCGGCACAGGACCTCTTCGAC...TCTTCTGTCCAAAGATGGCTGCGGGCTAAGCAAGGTCCTGCCCTGGGTGGATAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR TCA 90 bp | GTTGGGGAACTCCTCCAGGTGCAGGAATTAGGATGGGGGTCTGTGGACTCAACACAGGGAGGGCCTCTCTaGGGGCCTCAGGGAGAGACA | + |
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Preference number: 4 (lower is better) Translates to: VGELLQVQELGWGSVDSTQGGPL*GPQGET Trigger: TGTCTCTCCCTGAGGCCCTCAGAGAGGCCCTCCCTG...TGTTGAGTCCACAGACCCCCATCCTAATTCCTGCACCTGGAGGAGTTCCCCAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CAA 72 bp | AGGCAGACGGGCAGCAGTGGCCCAGCGTTGCATTGCTaGTGCAGACATGCCCAGATGAACACCAGGAGACTG | + |
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Preference number: 4 (lower is better) Translates to: RQTGSSGPALHC*CRHAQMNTRRL Trigger: CAGTCTCCTGGTGTTCATCTGGGCATGTCTGCACAAGCAATGCAACGCTGGGCCACTGCTGCCCGTCTGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR TCA 90 bp | GCGTTGCATTGCTTGTGCAGACATGCCCAGATGAACACCAGGAGACTGGAGGGTGCAGGTTCTCGTCCTTaGTGTCGCGGTGCACGACCC | + |
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Preference number: 4 (lower is better) Translates to: ALHCLCRHAQMNTRRLEGAGSRP*CRGARP Trigger: GGGTCGTGCACCGCGACATCAAGGACGAGAACCTGC...ACCCTCCAGTCTCCTGGTGTTCATCTGGGCATGTCTGCACAAGCAATGCAACGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR GCA 90 bp | GACTCAACAGCCACATTTGACTTTCAACACCCCAGGGGCCTGGAGAAGGTGGTTACAGCGGCAAGCACCTaGGCGAAGAAGCGACGCGCC | + |
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Preference number: 4 (lower is better) Translates to: DSTATFDFQHPRGLEKVVTAAST*AKKRRA Trigger: GGCGCGTCGCTTCTTCGCGCAGGTGCTTGCCGCTGT...AACCACCTTCTCCAGGCCCCTGGGGTGTTGAAAGTCAAATGTGGCTGTTGAGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR CCA 90 bp | GCAAAGGTCACCAGGGGTCAGAGGTCACTGCTTTTGCAGCAGACATCCCAGGCAAGCACGGCGCCCACCTaGTACACCTTCTCGAAGCTC | + |
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Preference number: 4 (lower is better) Translates to: AKVTRGQRSLLLQQTSQASTAPT*YTFSKL Trigger: GAGCTTCGAGAAGGTGTACCAGGTGGGCGCCGTGCT...TGCCTGGGATGTCTGCTGCAAAAGCAGTGACCTCTGACCCCTGGTGACCTTTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR CCA 90 bp | GTATCCACCCAGGGCAGGACCTTGCTTAGCCCGCAGCCATCTTTGGACAGAAGAAAGCTGCTGGCACTCTaGGGAGACCCTCCTCCGGAA | + |
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Preference number: 4 (lower is better) Translates to: VSTQGRTLLSPQPSLDRRKLLAL*GDPPPE Trigger: TTCCGGAGGAGGGTCTCCCCAGAGTGCCAGCAGCTT...TCTTCTGTCCAAAGATGGCTGCGGGCTAAGCAAGGTCCTGCCCTGGGTGGATAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR GCA 90 bp | CGCAGAGTGCTCAGGGTGACAGGGTCTCCCACTCCCCTTAAATTAGCCACTGTACGCTCCTTCACCACGTaGTTCACAGCCACCGGGAGT | + |
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Preference number: 4 (lower is better) Translates to: RRVLRVTGSPTPLKLATVRSFTT*FTATGS Trigger: ACTCCCGGTGGCTGTGAAGCACGTGGTGAAGGAGCG...TACAGTGGCTAATTTAAGGGGAGTGGGAGACCCTGTCACCCTGAGCACTCTGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR CCA 90 bp | GGAAACAGGCCCGGTGCCGAGAGCAAAGGTCACCAGGGGTCAGAGGTCACTGCTTCTCCTTGTCAGCCTTaGCTGGCTGTAGGATCTTCA | + |
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Preference number: 4 (lower is better) Translates to: GNRPGAESKGHQGSEVTASPCQP*LAVGSS Trigger: TGAAGATCCTACAGCCAGCCAAGGCTGACAAGGAGA...AGCAGTGACCTCTGACCCCTGGTGACCTTTGCTCTCGGCACCGGGCCTGTTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR CCA 90 bp | AAGCAAAGGAAACAGGCCCGGTGCCGAGAGCAAAGGTCACCAGGGGTCAGAGGTAAGGTCACAGTTCTCTaGAACGCTCCCCTCTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: KQRKQARCREQRSPGVRGKVTVL*NAPLCP Trigger: GGGACAGAGGGGAGCGTTCCAGAGAACTGTGACCTT...ACCTCTGACCCCTGGTGACCTTTGCTCTCGGCACCGGGCCTGTTTCCTTTGCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CAA 72 bp | ACCCAGGGCAGGACCTTGCTTAGCCCGCAGCCATCTTaGGACAGAAGAGCTCAAGAAAACCCAGGCCCTGTG | + |
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Preference number: 4 (lower is better) Translates to: TQGRTLLSPQPS*DRRAQENPGPV Trigger: CACAGGGCCTGGGTTTTCTTGAGCTCTTCTGTCCAAAGATGGCTGCGGGCTAAGCAAGGTCCTGCCCTGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR GCA 90 bp | CCCGCAGCCATCTTTGGACAGAAGAGCTCAAGAAAACCCAGGCCCTGTGGAGCATCCTTGATGTCGCGGTaGACGACCCCACAATTGTGG | + |
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Preference number: 4 (lower is better) Translates to: PAAIFGQKSSRKPRPCGASLMSR*TTPQLW Trigger: CCACAATTGTGGGGTCGTGCACCGCGACATCAAGGA...TGCTCCACAGGGCCTGGGTTTTCTTGAGCTCTTCTGTCCAAAGATGGCTGCGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CAA 72 bp | GGATCTCTGGTTCAAGTATCCACCCAGGGCAGGACCTaGCTTAGCCCGCAGCCATCTTTGGACAGAAGAGCT | + |
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Preference number: 4 (lower is better) Translates to: GSLVQVSTQGRT*LSPQPSLDRRA Trigger: AGCTCTTCTGTCCAAAGATGGCTGCGGGCTAAGCAAGGTCCTGCCCTGGGTGGATACTTGAACCAGAGATCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| 3UTR CAA 72 bp | TTGACTTTCAACACCCCAGGGGCCTGGAGAAGGTGGTaGCTTGGAGGAACCTCAGCAAATAAATTAAACAAT | + |
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Preference number: 4 (lower is better) Translates to: LTFNTPGAWRRW*LGGTSANKLNN Trigger: ATTGTTTAATTTATTTGCTGAGGTTCCTCCAAGCAACCACCTTCTCCAGGCCCCTGGGGTGTTGAAAGTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS CCA 90 bp | CTCTCCTTGTCAGCCTTGGCTGGCTGTAGGATCTTCACTGGGAGGTaGTCCACGCCGCCAGGCCCGCAGAGGTGCGCCAGGGAGCCGAAC | + |
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Preference number: 5 (lower is better) Translates to: LSLSALAGCRIFTGR*STPPGPQRCAREPN Trigger: GTTCGGCTCCCTGGCGCACCTCTGCGGGCCTGGCGGCGTGGACCACCTCCCAGTGAAGATCCTACAGCCAGCCAAGGCTGACAAGGAGAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR CAA 90 bp | AAGCAAAGGAAACAGGCCCGGTGCCGAGAGCAAAGGTCACCAGGGGTCAGAGGTCCCGCCGCGCCCACCTaGCGCAGCAGCACCACCTCC | + |
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Preference number: 5 (lower is better) Translates to: KQRKQARCREQRSPGVRGPAAPT*RSSTTS Trigger: GGAGGTGGTGCTGCTGCGCAAGGTGGGCGCGGCGGG...ACCTCTGACCCCTGGTGACCTTTGCTCTCGGCACCGGGCCTGTTTCCTTTGCTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS CCA 90 bp | GGCCTCTCTGAGGGCCTCAGGGAGAGACACCACTCAATAAGCTGCTaGCACTCTGGGGAGACCCTCCTCCGGAAAAAGAGCCTGCCGCGC | + |
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Preference number: 5 (lower is better) Translates to: GLSEGLRERHHSISC*HSGETLLRKKSLPR Trigger: GCGCGGCAGGCTCTTTTTCCGGAGGAGGGTCTCCCCAGAGTGCCAGCAGCTTATTGAGTGGTGTCTCTCCCTGAGGCCCTCAGAGAGGCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS GCA 90 bp | GAGGGCCTCTCTGAGGGCCTCAGGGAGAGACACCACTCAATAAGCTaGTGGCACTCTGGGGAGACCCTCCTCCGGAAAAAGAGCCTGCCG | + |
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Preference number: 5 (lower is better) Translates to: EGLSEGLRERHHSIS*WHSGETLLRKKSLP Trigger: CGGCAGGCTCTTTTTCCGGAGGAGGGTCTCCCCAGAGTGCCAGCAGCTTATTGAGTGGTGTCTCTCCCTGAGGCCCTCAGAGAGGCCCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS TCA 90 bp | CAGCATCCAGGGGTGGGCAGCAATTTGGTCCAGGGAGGGCCTCTCTaGGGGCCTCAGGGAGAGACACCACTCAATAAGCTGCTGGCACTC | + |
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Preference number: 5 (lower is better) Translates to: QHPGVGSNLVQGGPL*GPQGETPLNKLLAL Trigger: GAGTGCCAGCAGCTTATTGAGTGGTGTCTCTCCCTGAGGCCCTCAGAGAGGCCCTCCCTGGACCAAATTGCTGCCCACCCCTGGATGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR CAA 90 bp | GCGTTGCATTGCTTGTGCAGACATGCCCAGATGAACACCAGGAGACTGGAGGGTGGGGTGGGCAGCAATTaGGTCCAGGGAGGGCCTCTC | + |
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Preference number: 5 (lower is better) Translates to: ALHCLCRHAQMNTRRLEGGVGSN*VQGGPL Trigger: GAGAGGCCCTCCCTGGACCAAATTGCTGCCCACCCC...ACCCTCCAGTCTCCTGGTGTTCATCTGGGCATGTCTGCACAAGCAATGCAACGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS-3UTR CAA 90 bp | AAGCAAAGGAAACAGGCCCGGTGCCGAGAGCAAAGGTCACCAGGGGTCAGAGGTTTCTCGAAGCTCTCCTaGTCAGCCTTGGCTGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: KQRKQARCREQRSPGVRGFSKLS*SALAGC Trigger: ACAGCCAGCCAAGGCTGACAAGGAGAGCTTCGAGAA...ACCTCTGACCCCTGGTGACCTTTGCTCTCGGCACCGGGCCTGTTTCCTTTGCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS TCA 72 bp | AGCCGTCGGGCCGCTCGAACCAGTCCAGCAAGCGGATaGCGCCGCGCGCGCCGCCCGCCGCGCCCACCTTGC | + |
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Preference number: 6 (lower is better) Translates to: SRRAARTSPASG*RRARRPPRPPC Trigger: GCAAGGTGGGCGCGGCGGGCGGCGCGCGCGGCGTCATCCGCTTGCTGGACTGGTTCGAGCGGCCCGACGGCT 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS GCA 72 bp | AGACTGCCCCACTCGGTCACCCGCTCCTTCACCACGTaGTTCACAGCCACCGGGAGTCCGTCGGCGATGCGG | + |
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Preference number: 6 (lower is better) Translates to: RLPHSVTRSFTT*FTATGSPSAMR Trigger: CCGCATCGCCGACGGACTCCCGGTGGCTGTGAAGCACGTGGTGAAGGAGCGGGTGACCGAGTGGGGCAGTCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS CCA 72 bp | TCAGCCTTGGCTGGCTGTAGGATCTTCACTGGGAGGTaGTCCACGCCGCCAGGCCCGCAGAGGTGCGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: SALAGCRIFTGR*STPPGPQRCAR Trigger: CCTGGCGCACCTCTGCGGGCCTGGCGGCGTGGACCACCTCCCAGTGAAGATCCTACAGCCAGCCAAGGCTGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS TCA 72 bp | GGGGTGGGCAGCAATTTGGTCCAGGGAGGGCCTCTCTaGGGGCCTCAGGGAGAGACACCACTCAATAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: GVGSNLVQGGPL*GPQGETPLNKL Trigger: CAGCTTATTGAGTGGTGTCTCTCCCTGAGGCCCTCAGAGAGGCCCTCCCTGGACCAAATTGCTGCCCACCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS CCA 72 bp | CAGGGAGAGACACCACTCAATAAGCTGCTGGCACTCTaGGGAGACCCTCCTCCGGAAAAAGAGCCTGCCGCG | + |
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Preference number: 6 (lower is better) Translates to: QGETPLNKLLAL*GDPPPEKEPAA Trigger: CGCGGCAGGCTCTTTTTCCGGAGGAGGGTCTCCCCAGAGTGCCAGCAGCTTATTGAGTGGTGTCTCTCCCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS GCA 72 bp | GGCACTCTGGGGAGACCCTCCTCCGGAAAAAGAGCCTaGCGCGCAAGATCTCCTCATCCTGCTCAAAGGGAA | + |
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Preference number: 6 (lower is better) Translates to: GTLGRPSSGKRA*RARSPHPAQRE Trigger: TTCCCTTTGAGCAGGATGAGGAGATCTTGCGCGGCAGGCTCTTTTTCCGGAGGAGGGTCTCCCCAGAGTGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS CCA 72 bp | GAGGGCCTCAGGGAGAGACACCACTCAATAAGCTGCTaGCACTCTGGGGAGACCCTCCTCCGGAAAAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: EGLRERHHSISC*HSGETLLRKKS Trigger: GCTCTTTTTCCGGAGGAGGGTCTCCCCAGAGTGCCAGCAGCTTATTGAGTGGTGTCTCTCCCTGAGGCCCTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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| CDS GCA 72 bp | TCTGAGGGCCTCAGGGAGAGACACCACTCAATAAGCTaGTGGCACTCTGGGGAGACCCTCCTCCGGAAAAAG | + |
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Preference number: 6 (lower is better) Translates to: SEGLRERHHSIS*WHSGETLLRKK Trigger: CTTTTTCCGGAGGAGGGTCTCCCCAGAGTGCCAGCAGCTTATTGAGTGGTGTCTCTCCCTGAGGCCCTCAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042818.11 |
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