Pregenerated sensors for PIM2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031155Ensembl transcript IDs: ENSMUST00000033495.15
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGTCCGGTGATGTCCATCTCCCATTCCTTCCCAAATCATGGAAGTaGGGTTCTTCTCACCGGAATAAGAGCACTTGGGATAACAGTAGG | + |
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Preference number: 1 (lower is better) Translates to: VSGDVHLPFLPKSWK*GSSHRNKSTWDNSR Trigger: CCTACTGTTATCCCAAGTGCTCTTATTCCGGTGAGAAGAACCTCACTTCCATGATTTGGGAAGGAATGGGAGATGGACATCACCGGACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| 3UTR-3UTR CCA 90 bp | TCTCTGGTGGTGTCCGGTGATGTCCATCTCCCATTCCTTCCCAAATCATGGAAGAGGGACCACAGGTTCTaGGAGGAGAGCTCCTTCCCA | + |
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Preference number: 2 (lower is better) Translates to: SLVVSGDVHLPFLPKSWKRDHRF*EESSFP Trigger: TGGGAAGGAGCTCTCCTCCCAGAACCTGTGGTCCCT...CTTCCATGATTTGGGAAGGAATGGGAGATGGACATCACCGGACACCACCAGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| 3UTR-3UTR TCA 90 bp | GCCGCTCTCCACCTCCAGTACAGAATTATTTACATTTCAACCACTGGACAATCCCAGGCAGCAACAGAATaGGATCCCAGGGTAAGGCCC | + |
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Preference number: 2 (lower is better) Translates to: AALHLQYRIIYISTTGQSQAATE*DPRVRP Trigger: GGGCCTTACCCTGGGATCTCATTCTGTTGCTGCCTG...GGATTGTCCAGTGGTTGAAATGTAAATAATTCTGTACTGGAGGTGGAGAGCGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| 3UTR-3UTR TCA 90 bp | GGAAGTGAGGTTCTTCTCACCGGAATAAGAGCACTTGGGATAACAGTAGGGTCCGCTATCATCTTCTTCTaGCCCCTGATCCCTATTCCC | + |
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Preference number: 2 (lower is better) Translates to: GSEVLLTGIRALGITVGSAIIFF*PLIPIP Trigger: GGGAATAGGGATCAGGGGTCAGAAGAAGATGATAGC...GGACCCTACTGTTATCCCAAGTGCTCTTATTCCGGTGAGAAGAACCTCACTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| 3UTR-3UTR CCA 90 bp | GGAAGTGAGGTTCTTCTCACCGGAATAAGAGCACTTGGGATAACAGTAGGGTCCAATTGGGATAGGAACTaGGCAGACTTGGCTATCATC | + |
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Preference number: 2 (lower is better) Translates to: GSEVLLTGIRALGITVGSNWDRN*ADLAII Trigger: GATGATAGCCAAGTCTGCCCAGTTCCTATCCCAATT...GGACCCTACTGTTATCCCAAGTGCTCTTATTCCGGTGAGAAGAACCTCACTTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| 3UTR-3UTR CCA 90 bp | CTCTCCACCTCCAGTACAGAATTATTTACATTTCAACCACTGGACAATCCTGGCGCTCCTTCCCAGAATTaGGATAGGAACTGGGCAGAC | + |
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Preference number: 2 (lower is better) Translates to: LSTSSTELFTFQPLDNPGAPSQN*DRNWAD Trigger: GTCTGCCCAGTTCCTATCCCAATTCTGGGAAGGAGC...GCCAGGATTGTCCAGTGGTTGAAATGTAAATAATTCTGTACTGGAGGTGGAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| 3UTR TCA 72 bp | AACCAGGTCAACAGATGTCCATCTATCCCTGTAGCGTaGCCATGGGATTCCAACCAGAGAGCCTGGCTGGGT | + |
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Preference number: 3 (lower is better) Translates to: NQVNRCPSIPVA*PWDSNQRAWLG Trigger: ACCCAGCCAGGCTCTCTGGTTGGAATCCCATGGTCACGCTACAGGGATAGATGGACATCTGTTGACCTGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| 3UTR TCA 72 bp | ACCATCCATCCCATCCTAGTCTCTGGTGGTGTCCGGTaGTGTCCATCTCCCATTCCTTCCCAAATCATGGAA | + |
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Preference number: 3 (lower is better) Translates to: TIHPILVSGGVR*CPSPIPSQIME Trigger: TTCCATGATTTGGGAAGGAATGGGAGATGGACATCACCGGACACCACCAGAGACTAGGATGGGATGGATGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| 3UTR CCA 72 bp | ATTAATGAGCAGTACCTCCCCCAGAATCACCAAGTCTaGGCTAAGGCAGGCAGGCAGCAACAGAATGAGATC | + |
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Preference number: 3 (lower is better) Translates to: INEQYLPQNHQV*AKAGRQQQNEI Trigger: GATCTCATTCTGTTGCTGCCTGCCTGCCTTAGCCCAGACTTGGTGATTCTGGGGGAGGTACTGCTCATTAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| 3UTR TCA 72 bp | GATGTCCATCTCCCATTCCTTCCCAAATCATGGAAGTaGGGTTCTTCTCACCGGAATAAGAGCACTTGGGAT | + |
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Preference number: 3 (lower is better) Translates to: DVHLPFLPKSWK*GSSHRNKSTWD Trigger: ATCCCAAGTGCTCTTATTCCGGTGAGAAGAACCTCACTTCCATGATTTGGGAAGGAATGGGAGATGGACATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR GCA 90 bp | GGCAGGGGGAGAAGGGACAGGAGGGCACTTGCCGCTCTCCACCTCCAGTACAGAGGCGAAGGATGCCCCTaGAGAGGCTTGGTCAACATG | + |
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Preference number: 4 (lower is better) Translates to: GRGRRDRRALAALHLQYRGEGCP*RGLVNM Trigger: CATGTTGACCAAGCCTCTGCAGGGGCATCCTTCGCC...TCTGTACTGGAGGTGGAGAGCGGCAAGTGCCCTCCTGTCCCTTCTCCCCCTGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR GCA 90 bp | AATGAGCAGTACCTCCCCCAGAATCACCAAGTCTGGGCTAAGGCAGGCAGGCAGTTGCCTCCTGGAGGCTaGGTGGGGGTCACAGGGGGC | + |
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Preference number: 4 (lower is better) Translates to: NEQYLPQNHQVWAKAGRQLPPGG*VGVTGG Trigger: GCCCCCTGTGACCCCCACGCAGCCTCCAGGAGGCAA...CTGCCTGCCTGCCTTAGCCCAGACTTGGTGATTCTGGGGGAGGTACTGCTCATT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CCA 90 bp | AATGAGCAGTACCTCCCCCAGAATCACCAAGTCTGGGCTAAGGCAGGCAGGCAGCTCCTGGAGGCTGCGTaGGGGTCACAGGGGGCGAAG | + |
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Preference number: 4 (lower is better) Translates to: NEQYLPQNHQVWAKAGRQLLEAA*GSQGAK Trigger: CTTCGCCCCCTGTGACCCCCACGCAGCCTCCAGGAG...CTGCCTGCCTGCCTTAGCCCAGACTTGGTGATTCTGGGGGAGGTACTGCTCATT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR GCA 90 bp | GCAGGCAGCAACAGAATGAGATCCCAGGGTAAGGCCCTTTGCCTAAAGAGCTGCAAGCTGCCCGATCCTTaGCTCCTGGAGGCTGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: AGSNRMRSQGKALCLKSCKLPDP*LLEAAW Trigger: CCACGCAGCCTCCAGGAGGCAAGGATCGGGCAGCTT...GCAGCTCTTTAGGCAAAGGGCCTTACCCTGGGATCTCATTCTGTTGCTGCCTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CCA 90 bp | AGAATGAGATCCCAGGGTAAGGCCCTTTGCCTAAAGAGCTGCTGGGGATGGGGGGTCGCTGGCAGGGCATaGTACTGGTGTCGCGAGATC | + |
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Preference number: 4 (lower is better) Translates to: RMRSQGKALCLKSCWGWGVAGRA*YWCREI Trigger: GATCTCGCGACACCAGTACCATGCCCTGCCAGCGAC...CCCCCATCCCCAGCAGCTCTTTAGGCAAAGGGCCTTACCCTGGGATCTCATTCT 59% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR GCA 90 bp | GGAAGTGAGGTTCTTCTCACCGGAATAAGAGCACTTGGGATAACAGTAGGGTCCCGGCCCGGAAGCGCCTaGAGACGGCGCAGCGTTAAG | + |
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Preference number: 4 (lower is better) Translates to: GSEVLLTGIRALGITVGSRPGSA*RRRSVK Trigger: CTTAACGCTGCGCCGTCTGCAGGCGCTTCCGGGCCG...GGACCCTACTGTTATCCCAAGTGCTCTTATTCCGGTGAGAAGAACCTCACTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CCA 90 bp | GCAGGCAGCAACAGAATGAGATCCCAGGGTAAGGCCCTTTGCCTAAAGAGCTGCACCAGGGCAAGGGGGTaGGGCTTCCTTTGGAGGAGT | + |
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Preference number: 4 (lower is better) Translates to: AGSNRMRSQGKALCLKSCTRARG*GFLWRS Trigger: ACTCCTCCAAAGGAAGCCCCACCCCCTTGCCCTGGT...GCAGCTCTTTAGGCAAAGGGCCTTACCCTGGGATCTCATTCTGTTGCTGCCTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CCA 90 bp | GGTCAACAGATGTCCATCTATCCCTGTAGCGTGACCATGGGATTCCAACCAGAGGCCCCTGCAGAGGCTTaGTCAACATGGAGGAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: GQQMSIYPCSVTMGFQPEAPAEA*STWRRC Trigger: GCACCTCCTCCATGTTGACCAAGCCTCTGCAGGGGC...CTCTGGTTGGAATCCCATGGTCACGCTACAGGGATAGATGGACATCTGTTGACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR TCA 90 bp | AGTGAGGTTCTTCTCACCGGAATAAGAGCACTTGGGATAACAGTAGGGTCCCCTCCTCAAGTGGGCAGGTaGCTGAGTCTGACACGGTGG | + |
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Preference number: 4 (lower is better) Translates to: SEVLLTGIRALGITVGSPPQVGR*LSLTRW Trigger: CCACCGTGTCAGACTCAGTCACCTGCCCACTTGAGG...AGGGGACCCTACTGTTATCCCAAGTGCTCTTATTCCGGTGAGAAGAACCTCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR TCA 90 bp | ATGAGCAGTACCTCCCCCAGAATCACCAAGTCTGGGCTAAGGCAGGCAGGCAGCTTCCTTTGGAGGAGTTaGTGGGCTTTTCTTCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: MSSTSPRITKSGLRQAGSFLWRS*WAFLQL Trigger: CAGCTGAAGAAAAGCCCATCAACTCCTCCAAAGGAA...GCTGCCTGCCTGCCTTAGCCCAGACTTGGTGATTCTGGGGGAGGTACTGCTCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR GCA 90 bp | CAGAACAAGAAACAAGTAACTCCCCCTCCCAAATTAGGGACCACAGGTTCTGGGGTCCCGCGAAGACGGTaGCAAAGCCTCCCTTACCCA | + |
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Preference number: 4 (lower is better) Translates to: QNKKQVTPPPKLGTTGSGVPRRR*QSLPYP Trigger: TGGGTAAGGGAGGCTTTGGCACCGTCTTCGCGGGAC...CCCAGAACCTGTGGTCCCTAATTTGGGAGGGGGAGTTACTTGTTTCTTGTTCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CCA 90 bp | GGCACTTGCCGCTCTCCACCTCCAGTACAGAATTATTTACATTTCAACCACTGGACAACTCCACGGGCGTaGCAGTGCTGGACAGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: GTCRSPPPVQNYLHFNHWTTPRA*QCWTAA Trigger: GGCAGCTGTCCAGCACTGCCACGCCCGTGGAGTTGT...CCAGTGGTTGAAATGTAAATAATTCTGTACTGGAGGTGGAGAGCGGCAAGTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR TCA 90 bp | CAGAACAAGAAACAAGTAACTCCCCCTCCCAAATTAGGGACCACAGGTTCTGGGCAGAATCTCCTCCAGTaGGGGTCGGGAGCAGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: QNKKQVTPPPKLGTTGSGQNLLQ*GSGAGF Trigger: AAACCCTGCTCCCGACCCTCACTGGAGGAGATTCTG...CCCAGAACCTGTGGTCCCTAATTTGGGAGGGGGAGTTACTTGTTTCTTGTTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CCA 90 bp | AGTGAGGTTCTTCTCACCGGAATAAGAGCACTTGGGATAACAGTAGGGTCCCCTGGCAGGGCATGGTACTaGTGTCGCGAGATCCACTCT | + |
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Preference number: 4 (lower is better) Translates to: SEVLLTGIRALGITVGSPGRAWY*CREIHS Trigger: AGAGTGGATCTCGCGACACCAGTACCATGCCCTGCC...AGGGGACCCTACTGTTATCCCAAGTGCTCTTATTCCGGTGAGAAGAACCTCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| 3UTR CAA 72 bp | ATAATCCAGGCAGGGGGAGAAGGGACAGGAGGGCACTaGCCGCTCTCCACCTCCAGTACAGAATTATTTACA | + |
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Preference number: 4 (lower is better) Translates to: IIQAGGEGTGGH*PLSTSSTELFT Trigger: TGTAAATAATTCTGTACTGGAGGTGGAGAGCGGCAAGTGCCCTCCTGTCCCTTCTCCCCCTGCCTGGATTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR TCA 90 bp | GAACTGGGCAGACTTGGCTATCATCTTCTTCTGACCCCTGATCCCTATTCCCTGGCGGCCCCTTCTCTGTaGTATAGTCGAAGAGATCCT | + |
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Preference number: 4 (lower is better) Translates to: ELGRLGYHLLLTPDPYSLAAPSL*YSRRDP Trigger: AGGATCTCTTCGACTATATCACAGAGAAGGGGCCGC...CAGGGAATAGGGATCAGGGGTCAGAAGAAGATGATAGCCAAGTCTGCCCAGTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR GCA 90 bp | GGCTATCATCTTCTTCTGACCCCTGATCCCTATTCCCTGACCTTAGTAATACTGTTCGGCCTCGAAAGCTaGCCGATCCTTGCCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: GYHLLLTPDPYSLTLVILFGLES*PILASW Trigger: CCAGGAGGCAAGGATCGGGCAGCTTTCGAGGCCGAA...CAGTATTACTAAGGTCAGGGAATAGGGATCAGGGGTCAGAAGAAGATGATAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR GCA 90 bp | GGCACTTGCCGCTCTCCACCTCCAGTACAGAATTATTTACATTTCAACCACTGGCACCCGGATGGCCATTaGCTTCACCCACCTTCCACA | + |
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Preference number: 4 (lower is better) Translates to: GTCRSPPPVQNYLHFNHWHPDGH*LHPPST Trigger: TGTGGAAGGTGGGTGAAGGCAATGGCCATCCGGGTG...CCAGTGGTTGAAATGTAAATAATTCTGTACTGGAGGTGGAGAGCGGCAAGTGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CCA 90 bp | CAATGTCAGATTAAGAATCTTAGGGCCCAGAGGGAAGGAATCCAACCAAATAAAGGAAGGCAGGGAATCTaGCGGCCCGGAAGCGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: QCQIKNLRAQREGIQPNKGRQGI*RPGSAC Trigger: GCAGGCGCTTCCGGGCCGCCAGATTCCCTGCCTTCC...TTTATTTGGTTGGATTCCTTCCCTCTGGGCCCTAAGATTCTTAATCTGACATTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CCA 90 bp | CAGAACAAGAAACAAGTAACTCCCCCTCCCAAATTAGGGACCACAGGTTCTGGGTCCTTGATATCCCGATaGACAACTCCACGGGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: QNKKQVTPPPKLGTTGSGSLISR*TTPRAW Trigger: CCACGCCCGTGGAGTTGTCCATCGGGATATCAAGGA...CCCAGAACCTGTGGTCCCTAATTTGGGAGGGGGAGTTACTTGTTTCTTGTTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR TCA 90 bp | CAGAACAAGAAACAAGTAACTCCCCCTCCCAAATTAGGGACCACAGGTTCTGGGCTTTTCTTCAGCTGGTaGTTGCATCCAGGGGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: QNKKQVTPPPKLGTTGSGLFFSW*LHPGVQ Trigger: CTGGACCCCTGGATGCAATCACCAGCTGAAGAAAAG...CCCAGAACCTGTGGTCCCTAATTTGGGAGGGGGAGTTACTTGTTTCTTGTTCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CCA 90 bp | TCTCTGGTGGTGTCCGGTGATGTCCATCTCCCATTCCTTCCCAAATCATGGAAGGAGGCTTGGTCAACATaGAGGAGGTGCTGCGTATAT | + |
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Preference number: 4 (lower is better) Translates to: SLVVSGDVHLPFLPKSWKEAWST*RRCCVY Trigger: ATATACGCAGCACCTCCTCCATGTTGACCAAGCCTC...CTTCCATGATTTGGGAAGGAATGGGAGATGGACATCACCGGACACCACCAGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CCA 90 bp | CAATGTCAGATTAAGAATCTTAGGGCCCAGAGGGAAGGAATCCAACCAAATAAACCGATCCTTGCCTCCTaGAGGCTGCGTGGGGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: QCQIKNLRAQREGIQPNKPILAS*RLRGGH Trigger: GTGACCCCCACGCAGCCTCCAGGAGGCAAGGATCGG...TTTATTTGGTTGGATTCCTTCCCTCTGGGCCCTAAGATTCTTAATCTGACATTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR TCA 90 bp | GAACTGGGCAGACTTGGCTATCATCTTCTTCTGACCCCTGATCCCTATTCCCTGGGATGTTCTCATCCTTaGTATCCCGATGGACAACTC | + |
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Preference number: 4 (lower is better) Translates to: ELGRLGYHLLLTPDPYSLGCSHP*YPDGQL Trigger: GAGTTGTCCATCGGGATATCAAGGATGAGAACATCC...CAGGGAATAGGGATCAGGGGTCAGAAGAAGATGATAGCCAAGTCTGCCCAGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR GCA 90 bp | GGCACTTGCCGCTCTCCACCTCCAGTACAGAATTATTTACATTTCAACCACTGGTCTTCAGCTGGTGATTaGATCCAGGGGTCCAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: GTCRSPPPVQNYLHFNHWSSAGD*IQGSSR Trigger: TCTGCTGGACCCCTGGATGCAATCACCAGCTGAAGA...CCAGTGGTTGAAATGTAAATAATTCTGTACTGGAGGTGGAGAGCGGCAAGTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS GCA 90 bp | GGGCGCCAGGGTGGAAGGCAGGGAATCTGGCGGCCCGGAAGCGCCTaGAGACGGCGCAGCGTTAAGATTCGTCGCGCGCGCCAGCCCCAA | + |
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Preference number: 5 (lower is better) Translates to: GRQGGRQGIWRPGSA*RRRSVKIRRARQPQ Trigger: TTGGGGCTGGCGCGCGCGACGAATCTTAACGCTGCGCCGTCTGCAGGCGCTTCCGGGCCGCCAGATTCCCTGCCTTCCACCCTGGCGCCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS GCA 90 bp | TCCCTTACCCAGGAGGGGGCCAAGTCGGTATTCGGCCTCGAAAGCTaGCCGATCCTTGCCTCCTGGAGGCTGCGTGGGGGTCACAGGGGG | + |
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Preference number: 5 (lower is better) Translates to: SLTQEGAKSVFGLES*PILASWRLRGGHRG Trigger: CCCCCTGTGACCCCCACGCAGCCTCCAGGAGGCAAGGATCGGGCAGCTTTCGAGGCCGAATACCGACTTGGCCCCCTCCTGGGTAAGGGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS GCA 90 bp | TCCTTGCCTCCTGGAGGCTGCGTGGGGGTCACAGGGGGCGAAGGATaGCCCTGCAGAGGCTTGGTCAACATGGAGGAGGTGCTGCGTATA | + |
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Preference number: 5 (lower is better) Translates to: SLPPGGCVGVTGGEG*PCRGLVNMEEVLRI Trigger: TATACGCAGCACCTCCTCCATGTTGACCAAGCCTCTGCAGGGGCATCCTTCGCCCCCTGTGACCCCCACGCAGCCTCCAGGAGGCAAGGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS TCA 90 bp | TGCCTTCACCCACCTTCCACAGCAGCGCAACCTCAAGTGGGCAGGTaGCTGAGTCTGACACGGTGGACCAGCCTAGCACACGGTTCCGGG | + |
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Preference number: 5 (lower is better) Translates to: CLHPPSTAAQPQVGR*LSLTRWTSLAHGSG Trigger: CCCGGAACCGTGTGCTAGGCTGGTCCACCGTGTCAGACTCAGTCACCTGCCCACTTGAGGTTGCGCTGCTGTGGAAGGTGGGTGAAGGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS CCA 90 bp | TGGACAACTCCACGGGCGTGGCAGTGCTGGACAGCTGCCACGACTTaGGTAAAGAAGCTGCGGCTACAGCTTTCACCCAGCGGCCCCTTC | + |
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Preference number: 5 (lower is better) Translates to: WTTPRAWQCWTAATT*VKKLRLQLSPSGPF Trigger: GAAGGGGCCGCTGGGTGAAAGCTGTAGCCGCAGCTTCTTTACCCAAGTCGTGGCAGCTGTCCAGCACTGCCACGCCCGTGGAGTTGTCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS GCA 90 bp | GATATCCCGATGGACAACTCCACGGGCGTGGCAGTGCTGGACAGCTaGCACGACTTGGGTAAAGAAGCTGCGGCTACAGCTTTCACCCAG | + |
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Preference number: 5 (lower is better) Translates to: DIPMDNSTGVAVLDS*HDLGKEAAATAFTQ Trigger: CTGGGTGAAAGCTGTAGCCGCAGCTTCTTTACCCAAGTCGTGGCAGCTGTCCAGCACTGCCACGCCCGTGGAGTTGTCCATCGGGATATC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CAA 90 bp | GCAGGCAGCAACAGAATGAGATCCCAGGGTAAGGCCCTTTGCCTAAAGAGCTGCACACCCGGATGGCCATaGCCTTCACCCACCTTCCAC | + |
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Preference number: 5 (lower is better) Translates to: AGSNRMRSQGKALCLKSCTPGWP*PSPTFH Trigger: GTGGAAGGTGGGTGAAGGCAATGGCCATCCGGGTGT...GCAGCTCTTTAGGCAAAGGGCCTTACCCTGGGATCTCATTCTGTTGCTGCCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS GCA 90 bp | TTCTCATCCTTGATATCCCGATGGACAACTCCACGGGCGTGGCAGTaGTGGACAGCTGCCACGACTTGGGTAAAGAAGCTGCGGCTACAG | + |
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Preference number: 5 (lower is better) Translates to: FSSLISRWTTPRAWQ*WTAATTWVKKLRLQ Trigger: CTGTAGCCGCAGCTTCTTTACCCAAGTCGTGGCAGCTGTCCAGCACTGCCACGCCCGTGGAGTTGTCCATCGGGATATCAAGGATGAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS GCA 90 bp | GGGCTTCCTTTGGAGGAGTTGATGGGCTTTTCTTCAGCTGGTGATTaGATCCAGGGGTCCAGCAGAATCTCCTCCAGTGAGGGTCGGGAG | + |
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Preference number: 5 (lower is better) Translates to: GLPLEELMGFSSAGD*IQGSSRISSSEGRE Trigger: CTCCCGACCCTCACTGGAGGAGATTCTGCTGGACCCCTGGATGCAATCACCAGCTGAAGAAAAGCCCATCAACTCCTCCAAAGGAAGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS CCA 90 bp | CCTTCGGGTGTTTCGAACCAGTCAAGAAGGCGTATCACACCCGGATaGCCATTGCCTTCACCCACCTTCCACAGCAGCGCAACCTCAAGT | + |
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Preference number: 5 (lower is better) Translates to: PSGVSNQSRRRITPG*PLPSPTFHSSATSS Trigger: ACTTGAGGTTGCGCTGCTGTGGAAGGTGGGTGAAGGCAATGGCCATCCGGGTGTGATACGCCTTCTTGACTGGTTCGAAACACCCGAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CAA 90 bp | GCAGGCAGCAACAGAATGAGATCCCAGGGTAAGGCCCTTTGCCTAAAGAGCTGCGACAGCTGCCACGACTaGGGTAAAGAAGCTGCGGCT | + |
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Preference number: 5 (lower is better) Translates to: AGSNRMRSQGKALCLKSCDSCHD*GKEAAA Trigger: AGCCGCAGCTTCTTTACCCAAGTCGTGGCAGCTGTC...GCAGCTCTTTAGGCAAAGGGCCTTACCCTGGGATCTCATTCTGTTGCTGCCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CAA 90 bp | TGCCGCTCTCCACCTCCAGTACAGAATTATTTACATTTCAACCACTGGACAATCAAAGCTGCCCGATCCTaGCCTCCTGGAGGCTGCGTG | + |
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Preference number: 5 (lower is better) Translates to: CRSPPPVQNYLHFNHWTIKAARS*PPGGCV Trigger: CACGCAGCCTCCAGGAGGCAAGGATCGGGCAGCTTT...GATTGTCCAGTGGTTGAAATGTAAATAATTCTGTACTGGAGGTGGAGAGCGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CAA 90 bp | CTCTCCACCTCCAGTACAGAATTATTTACATTTCAACCACTGGACAATCCTGGCTGCCCCTGCAGAGGCTaGGTCAACATGGAGGAGGTG | + |
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Preference number: 5 (lower is better) Translates to: LSTSSTELFTFQPLDNPGCPCRG*VNMEEV Trigger: CACCTCCTCCATGTTGACCAAGCCTCTGCAGGGGCA...GCCAGGATTGTCCAGTGGTTGAAATGTAAATAATTCTGTACTGGAGGTGGAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CAA 90 bp | GCCGCTCTCCACCTCCAGTACAGAATTATTTACATTTCAACCACTGGACAATCCGGGGTGGGGCTTCCTTaGGAGGAGTTGATGGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: AALHLQYRIIYISTTGQSGVGLP*EELMGF Trigger: AAAGCCCATCAACTCCTCCAAAGGAAGCCCCACCCC...GGATTGTCCAGTGGTTGAAATGTAAATAATTCTGTACTGGAGGTGGAGAGCGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS TCA 90 bp | GGGCTATACACTCTTGTCCCATCAAAGTCAGTGTACGGCTCATCGTaGAGCAGGGCGCCGGAACCAAAATCAATGAGTTTAATGGAACCC | + |
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Preference number: 5 (lower is better) Translates to: GLYTLVPSKSVYGSS*SRAPEPKSMSLMEP Trigger: GGGTTCCATTAAACTCATTGATTTTGGTTCCGGCGCCCTGCTTCACGATGAGCCGTACACTGACTTTGATGGGACAAGAGTGTATAGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS-3UTR CAA 90 bp | TGCCGCTCTCCACCTCCAGTACAGAATTATTTACATTTCAACCACTGGACAATCCTTCCTTTGGAGGAGTaGATGGGCTTTTCTTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: CRSPPPVQNYLHFNHWTILPLEE*MGFSSA Trigger: AGCTGAAGAAAAGCCCATCAACTCCTCCAAAGGAAG...GATTGTCCAGTGGTTGAAATGTAAATAATTCTGTACTGGAGGTGGAGAGCGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS GCA 72 bp | GGTGGAAGGCAGGGAATCTGGCGGCCCGGAAGCGCCTaGAGACGGCGCAGCGTTAAGATTCGTCGCGCGCGC | + |
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Preference number: 6 (lower is better) Translates to: GGRQGIWRPGSA*RRRSVKIRRAR Trigger: GCGCGCGCGACGAATCTTAACGCTGCGCCGTCTGCAGGCGCTTCCGGGCCGCCAGATTCCCTGCCTTCCACC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS GCA 72 bp | CCTGGAGGCTGCGTGGGGGTCACAGGGGGCGAAGGATaGCCCTGCAGAGGCTTGGTCAACATGGAGGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: PGGCVGVTGGEG*PCRGLVNMEEV Trigger: CACCTCCTCCATGTTGACCAAGCCTCTGCAGGGGCATCCTTCGCCCCCTGTGACCCCCACGCAGCCTCCAGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS GCA 72 bp | CAGGAGGGGGCCAAGTCGGTATTCGGCCTCGAAAGCTaGCCGATCCTTGCCTCCTGGAGGCTGCGTGGGGGT | + |
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Preference number: 6 (lower is better) Translates to: QEGAKSVFGLES*PILASWRLRGG Trigger: ACCCCCACGCAGCCTCCAGGAGGCAAGGATCGGGCAGCTTTCGAGGCCGAATACCGACTTGGCCCCCTCCTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS CCA 72 bp | GTATTCGGCCTCGAAAGCTGCCCGATCCTTGCCTCCTaGAGGCTGCGTGGGGGTCACAGGGGGCGAAGGATG | + |
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Preference number: 6 (lower is better) Translates to: VFGLESCPILAS*RLRGGHRGRRM Trigger: CATCCTTCGCCCCCTGTGACCCCCACGCAGCCTCCAGGAGGCAAGGATCGGGCAGCTTTCGAGGCCGAATAC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS CAA 90 bp | TGCCCCTGCAGAGGCTTGGTCAACATGGAGGAGGTGCTGCGTATATaGAGCCCGCTGAATCCGCTGAGCCCGCAGGGCGTGGATGCCCGG | + |
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Preference number: 6 (lower is better) Translates to: CPCRGLVNMEEVLRI*SPLNPLSPQGVDAR Trigger: CCGGGCATCCACGCCCTGCGGGCTCAGCGGATTCAGCGGGCTCAATATACGCAGCACCTCCTCCATGTTGACCAAGCCTCTGCAGGGGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS CCA 72 bp | CCACGGGCGTGGCAGTGCTGGACAGCTGCCACGACTTaGGTAAAGAAGCTGCGGCTACAGCTTTCACCCAGC | + |
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Preference number: 6 (lower is better) Translates to: PRAWQCWTAATT*VKKLRLQLSPS Trigger: GCTGGGTGAAAGCTGTAGCCGCAGCTTCTTTACCCAAGTCGTGGCAGCTGTCCAGCACTGCCACGCCCGTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS TCA 72 bp | CCACCTTCCACAGCAGCGCAACCTCAAGTGGGCAGGTaGCTGAGTCTGACACGGTGGACCAGCCTAGCACAC | + |
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Preference number: 6 (lower is better) Translates to: PPSTAAQPQVGR*LSLTRWTSLAH Trigger: GTGTGCTAGGCTGGTCCACCGTGTCAGACTCAGTCACCTGCCCACTTGAGGTTGCGCTGCTGTGGAAGGTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS TCA 72 bp | AGCACACGGTTCCGGGAGATTACTTTGATGGCCACCTaGCGTCTATCCGTGACGCGGTGTCCCGCGAAGACG | + |
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Preference number: 6 (lower is better) Translates to: STRFREITLMAT*RLSVTRCPAKT Trigger: CGTCTTCGCGGGACACCGCGTCACGGATAGACGTCAGGTGGCCATCAAAGTAATCTCCCGGAACCGTGTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS GCA 72 bp | ATGGACAACTCCACGGGCGTGGCAGTGCTGGACAGCTaGCACGACTTGGGTAAAGAAGCTGCGGCTACAGCT | + |
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Preference number: 6 (lower is better) Translates to: MDNSTGVAVLDS*HDLGKEAAATA Trigger: AGCTGTAGCCGCAGCTTCTTTACCCAAGTCGTGGCAGCTGTCCAGCACTGCCACGCCCGTGGAGTTGTCCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS CCA 72 bp | ATATCCCGATGGACAACTCCACGGGCGTGGCAGTGCTaGACAGCTGCCACGACTTGGGTAAAGAAGCTGCGG | + |
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Preference number: 6 (lower is better) Translates to: ISRWTTPRAWQC*TAATTWVKKLR Trigger: CCGCAGCTTCTTTACCCAAGTCGTGGCAGCTGTCCAGCACTGCCACGCCCGTGGAGTTGTCCATCGGGATAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS GCA 72 bp | ACCAGTCAAGAAGGCGTATCACACCCGGATGGCCATTaGCTTCACCCACCTTCCACAGCAGCGCAACCTCAA | + |
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Preference number: 6 (lower is better) Translates to: TSQEGVSHPDGH*LHPPSTAAQPQ Trigger: TTGAGGTTGCGCTGCTGTGGAAGGTGGGTGAAGGCAATGGCCATCCGGGTGTGATACGCCTTCTTGACTGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS GCA 72 bp | TTGATATCCCGATGGACAACTCCACGGGCGTGGCAGTaGTGGACAGCTGCCACGACTTGGGTAAAGAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: LISRWTTPRAWQ*WTAATTWVKKL Trigger: CAGCTTCTTTACCCAAGTCGTGGCAGCTGTCCAGCACTGCCACGCCCGTGGAGTTGTCCATCGGGATATCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS CCA 72 bp | GTTTCGAACCAGTCAAGAAGGCGTATCACACCCGGATaGCCATTGCCTTCACCCACCTTCCACAGCAGCGCA | + |
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Preference number: 6 (lower is better) Translates to: VSNQSRRRITPG*PLPSPTFHSSA Trigger: TGCGCTGCTGTGGAAGGTGGGTGAAGGCAATGGCCATCCGGGTGTGATACGCCTTCTTGACTGGTTCGAAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS CCA 72 bp | TCATCCTTGATATCCCGATGGACAACTCCACGGGCGTaGCAGTGCTGGACAGCTGCCACGACTTGGGTAAAG | + |
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Preference number: 6 (lower is better) Translates to: SSLISRWTTPRA*QCWTAATTWVK Trigger: CTTTACCCAAGTCGTGGCAGCTGTCCAGCACTGCCACGCCCGTGGAGTTGTCCATCGGGATATCAAGGATGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS CAA 72 bp | AACCAGTCAAGAAGGCGTATCACACCCGGATGGCCATaGCCTTCACCCACCTTCCACAGCAGCGCAACCTCA | + |
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Preference number: 6 (lower is better) Translates to: NQSRRRITPGWP*PSPTFHSSATS Trigger: TGAGGTTGCGCTGCTGTGGAAGGTGGGTGAAGGCAATGGCCATCCGGGTGTGATACGCCTTCTTGACTGGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS GCA 72 bp | TTGGAGGAGTTGATGGGCTTTTCTTCAGCTGGTGATTaGATCCAGGGGTCCAGCAGAATCTCCTCCAGTGAG | + |
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Preference number: 6 (lower is better) Translates to: LEELMGFSSAGD*IQGSSRISSSE Trigger: CTCACTGGAGGAGATTCTGCTGGACCCCTGGATGCAATCACCAGCTGAAGAAAAGCCCATCAACTCCTCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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| CDS TCA 72 bp | ACTCTTGTCCCATCAAAGTCAGTGTACGGCTCATCGTaGAGCAGGGCGCCGGAACCAAAATCAATGAGTTTA | + |
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Preference number: 6 (lower is better) Translates to: TLVPSKSVYGSS*SRAPEPKSMSL Trigger: TAAACTCATTGATTTTGGTTCCGGCGCCCTGCTTCACGATGAGCCGTACACTGACTTTGATGGGACAAGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033495.15 |
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