RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PIK3CG (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020573

Ensembl transcript IDs: ENSMUST00000053215.14, ENSMUST00000085469.6, ENSMUST00000156904.8, ENSMUST00000217915.2, ENSMUST00000220366.2

Found 810 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGCAGCTGGGGAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTaGCTGGGCATCTCAGTGGTATACTGTGGGAAACAAACTGCTGAC +
Preference number: 1 (lower is better)
Translates to: SSWGGARLRLRACVQ*LGISVVYCGKQTAD
Trigger: GTCAGCAGTTTGTTTCCCACAGTATACCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTCCCCAGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CCA 90 bp GTGAGAGACAGAGGTGGTGAACGAATACGAGGAAGCAGGATCCTCTaGACATGGCAGGGCAGCTGCACATATGAACTCACAGCAGCTAGG +
Preference number: 1 (lower is better)
Translates to: VRDRGGERIRGSRIL*TWQGSCTYELTAAR
Trigger: CCTAGCTGCTGTGAGTTCATATGTGCAGCTGCCCTGCCATGTCCAGAGGATCCTGCTTCCTCGTATTCGTTCACCACCTCTGTCTCTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
3UTR TCA 90 bp AAGTGTTGCAGCATGGGTAAGGGGGAACAGAACAAGAGGGAAAGATaGCATTTGTGGGCATCCAGGGGTCCAGCTAGCGACTTCCTGCTT +
Preference number: 1 (lower is better)
Translates to: KCCSMGKGEQNKRER*HLWASRGPASDFLL
Trigger: AAGCAGGAAGTCGCTAGCTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCTTACCCATGCTGCAACACTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CCA 90 bp GTCCTGGTGCAGAGAGTAAGAGCCTGCAGAATACTCAGCCCTAAATaGAGCATCTATTACCTCCCCATCTCCTCCCAAGGCTCAGTGATC +
Preference number: 1 (lower is better)
Translates to: VLVQRVRACRILSPK*SIYYLPISSQGSVI
Trigger: GATCACTGAGCCTTGGGAGGAGATGGGGAGGTAATAGATGCTCCATTTAGGGCTGAGTATTCTGCAGGCTCTTACTCTCTGCACCAGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
3UTR CCA 90 bp CAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTaGTATACTGTGGGAAACAAACTGCTGACAGTACTCTGGTATTCT +
Preference number: 1 (lower is better)
Translates to: QGSGSELVFSAWASQ*YTVGNKLLTVLWYS
Trigger: AGAATACCAGAGTACTGTCAGCAGTTTGTTTCCCACAGTATACCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR GCA 90 bp AAAGATGACATTTGTGGGCATCCAGGGGTCCAGCTAGCGACTTCCTaGTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCG +
Preference number: 1 (lower is better)
Translates to: KDDICGHPGVQLATS*FVQEKMTLAVIGYS
Trigger: CGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGACCCCTGGATGCCCACAAATGTCATCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CCA 90 bp GAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGCATaGGTAAGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGG +
Preference number: 1 (lower is better)
Translates to: EESTSPGRSTGSVAA*VRGNRTRGKDDICG
Trigger: CCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCTTACCCATGCTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR TCA 90 bp CTGTACAGGAGACAGCGTAGTTTTAGAACAGTTACTTCCCAGGGATaGGGAGATGTTTTTGTAGCTCGTTATGAGCCAGGGAAGGTCCAG +
Preference number: 1 (lower is better)
Translates to: LYRRQRSFRTVTSQG*GDVFVARYEPGKVQ
Trigger: CTGGACCTTCCCTGGCTCATAACGAGCTACAAAAACATCTCCTCATCCCTGGGAAGTAACTGTTCTAAAACTACGCTGTCTCCTGTACAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
3UTR CCA 90 bp GTGAGGGCATCCCGGATATATTCAATGTCCTCTTTGCTTGTCAGCTaGGGCATTCCTGTCATCAGCATCATGGAGAACAAGATGATCAAC +
Preference number: 1 (lower is better)
Translates to: VRASRIYSMSSLLVS*GIPVISIMENKMIN
Trigger: GTTGATCATCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATATCCGGGATGCCCTCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
3UTR TCA 90 bp CAGTTAAACTGCACAGTCCATCCTTTGTCTCTGCAGACTTCGATCTaGTCAAGGAAATATTTCTTAGCGTCCTCCTCGCTTTTTCCCACG +
Preference number: 1 (lower is better)
Translates to: QLNCTVHPLSLQTSI*SRKYFLASSSLFPT
Trigger: CGTGGGAAAAAGCGAGGAGGACGCTAAGAAATATTTCCTTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
3UTR TCA 90 bp AGATCGTCAGGCATACTAAGCAAGGCTGCTCTAAGCTATTTAAACTaGGAATATTCTTCAACATCATGGAGACTGAGAGGAGGGAAAAGG +
Preference number: 1 (lower is better)
Translates to: RSSGILSKAALSYLN*EYSSTSWRLRGGKR
Trigger: CCTTTTCCCTCCTCTCAGTCTCCATGATGTTGAAGAATATTCTCAGTTTAAATAGCTTAGAGCAGCCTTGCTTAGTATGCCTGACGATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CCA 90 bp ACTTATATGCAAGTCTATGGAGTTGAAATTGCATTCTTTGGGAAATaGAAGAATGAAACCCAGTCTACGGCGCCATGTAGTTCAGCCTTA +
Preference number: 1 (lower is better)
Translates to: TYMQVYGVEIAFFGK*KNETQSTAPCSSAL
Trigger: TAAGGCTGAACTACATGGCGCCGTAGACTGGGTTTCATTCTTCCATTTCCCAAAGAATGCAATTTCAACTCCATAGACTTGCATATAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
3UTR GCA 90 bp CCCATTTGTCCTGTTCTTAGATTAGCAGGAATCACACTCCAGAAATaGCATAAAATTACATTCATAGAGAGAAGCACAGTTTCAGCACAG +
Preference number: 1 (lower is better)
Translates to: PICPVLRLAGITLQK*HKITFIERSTVSAQ
Trigger: CTGTGCTGAAACTGTGCTTCTCTCTATGAATGTAATTTTATGGCATTTCTGGAGTGTGATTCCTGCTAATCTAAGAACAGGACAAATGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
3UTR CCA 90 bp GCAGAATTAGGTGCTACTTGGCTTCTGGAGACACAAAGGGAATGTTaGGTTCCTTCTAATGGAAGTGTCTATTTTGACAATTTAAAAATC +
Preference number: 1 (lower is better)
Translates to: AELGATWLLETQREC*VPSNGSVYFDNLKI
Trigger: GATTTTTAAATTGTCAAAATAGACACTTCCATTAGAAGGAACCCAACATTCCCTTTGTGTCTCCAGAAGCCAAGTAGCACCTAATTCTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
3UTR CAA 90 bp CTAGAGCCACAGCAGCTGGGGAGGGGCAAGGCTCAGGCTCAGAGCTaGTGTTCAGTGCCTGGGCATCTCAGTGGTATACTGTGGGAAACA +
Preference number: 2 (lower is better)
Translates to: LEPQQLGRGKAQAQS*CSVPGHLSGILWET
Trigger: TGTTTCCCACAGTATACCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTCCCCAGCTGCTGTGGCTCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR GCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGGAGCTTAGCAATGCTTaGACCTTTTTCTGCCAAGAG +
Preference number: 2 (lower is better)
Translates to: EGQGSGSELVFSAWASQWELSNA*TFFCQE
Trigger: CTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTC...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR TCA 90 bp ACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGGCGCGTGCACCAAATCCCAGATTTTGAGATGTCTTTaGAGAGTCCACAAGTCCAGG +
Preference number: 2 (lower is better)
Translates to: TAARTSPRKAQGACTKSQILRCL*RVHKSR
Trigger: CCTGGACTTGTGGACTCTTCAAAGACATCTCAAAAT...CTGGGATTTGGTGCACGCGCCCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
3UTR-3UTR CCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGAGCCAAAATACATGGTaGACACACGAGAAAACAGGT +
Preference number: 2 (lower is better)
Translates to: EGQGSGSELVFSAWASQWSQNTW*THEKTG
Trigger: ACCTGTTTTCTCGTGTGTCCACCATGTATTTTGGCT...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR GCA 90 bp GCAGCTGCACATATGAACTCACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGGAGCTTAGCAATGCTTaGACCTTTTTCTGCCAAGAG +
Preference number: 2 (lower is better)
Translates to: AAAHMNSQQLGQAPGKLRELSNA*TFFCQE
Trigger: CTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTC...CCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGTGAGTTCATATGTGCAGCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
3UTR-3UTR CCA 90 bp ACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGGCGCGTGCACCAAATCCCAGCTAGCCAAGAACTGTTaGCAATTGATAGCTATAACT +
Preference number: 2 (lower is better)
Translates to: TAARTSPRKAQGACTKSQLAKNC*QLIAIT
Trigger: AGTTATAGCTATCAATTGCCAACAGTTCTTGGCTAG...CTGGGATTTGGTGCACGCGCCCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
3UTR CAA 90 bp CTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAATGTCCTCTTaGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAAC +
Preference number: 2 (lower is better)
Translates to: LFPTVRASRIYSMSS*LVSWGIPVISIMEN
Trigger: GTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATATCCGGGATGCCCTCACCGTGGGAAAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
3UTR-3UTR GCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGTGGGCACTGAGGGGATaGTTAGAAACACCCTTTAAA +
Preference number: 2 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQWALRG*LETPFK
Trigger: TTTAAAGGGTGTTTCTAAGCATCCCCTCAGTGCCCA...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR TCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGAAAGAGCTGGATTTCTaGAGTACAGTGTTCAGAGAG +
Preference number: 2 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQKELDF*STVFRE
Trigger: CTCTCTGAACACTGTACTTCAGAAATCCAGCTCTTT...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR CCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGAGCCAAAATACATGGTaGACACACGAGAAAACAGGT +
Preference number: 2 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQSQNTW*THEKTG
Trigger: ACCTGTTTTCTCGTGTGTCCACCATGTATTTTGGCT...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR GCA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGAGCTTAGCAATGCTTaGACCTTTTTCTGCCAAGAG +
Preference number: 2 (lower is better)
Translates to: VQLATSCFVQEKMTLAVIELSNA*TFFCQE
Trigger: CTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTC...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR GCA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTACTAACTTGCATTCCTTaGTCTGTGGGCACTGAGGGG +
Preference number: 2 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVLTCIP*SVGTEG
Trigger: CCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR CCA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTAGCTGGGGAAAGAGCTaGATTTCTGAAGTACAGTGT +
Preference number: 2 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLSWGKS*ISEVQC
Trigger: ACACTGTACTTCAGAAATCCAGCTCTTTCCCCAGCT...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR CCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGTATTCTTCAACATCATaGAGACTGAGAGGAGGGAAA +
Preference number: 2 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQYSSTS*RLRGGK
Trigger: TTTCCCTCCTCTCAGTCTCCATGATGTTGAAGAATA...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR CCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAGGTGAAGAGTTCAGCTaGGGAAAGAGCTGGATTTCT +
Preference number: 2 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKGEEFS*GKSWIS
Trigger: AGAAATCCAGCTCTTTCCCCAGCTGAACTCTTCACC...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR CCA 90 bp TTGAAATTGCATTCTTTGGGAAATGGAAGAATGAAACCCAGTCTACGGCGCCATGCATTCCTTGCTCTGTaGGCACTGAGGGGATGCTTA +
Preference number: 2 (lower is better)
Translates to: LKLHSLGNGRMKPSLRRHAFLAL*ALRGCL
Trigger: TAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGC...ATGGCGCCGTAGACTGGGTTTCATTCTTCCATTTCCCAAAGAATGCAATTTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
3UTR-3UTR GCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGTGGGCACTGAGGGGATaGTTAGAAACACCCTTTAAA +
Preference number: 2 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQWALRG*LETPFK
Trigger: TTTAAAGGGTGTTTCTAAGCATCCCCTCAGTGCCCA...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR CCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGAGCTGGGGAAAGAGCTaGATTTCTGAAGTACAGTGT +
Preference number: 2 (lower is better)
Translates to: AELSNACTFFCQELREHKSWGKS*ISEVQC
Trigger: ACACTGTACTTCAGAAATCCAGCTCTTTCCCCAGCT...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CAA 90 bp TTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTaGGTAAAAGGTGTCACCTCCACTTTTCACGTCCATAACCCTAGA +
Preference number: 2 (lower is better)
Translates to: FVQEKMTLAVIGYSL*VKGVTSTFHVHNPR
Trigger: TCTAGGGTTATGGACGTGAAAAGTGGAGGTGACACCTTTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR TCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAAAAGAGCTGGATTTCTaGAGTACAGTGTTCAGAGAG +
Preference number: 2 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKKELDF*STVFRE
Trigger: CTCTCTGAACACTGTACTTCAGAAATCCAGCTCTTT...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
44% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR CCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAAGCTGGGGAAAGAGCTaGATTTCTGAAGTACAGTGT +
Preference number: 2 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRSWGKS*ISEVQC
Trigger: ACACTGTACTTCAGAAATCCAGCTCTTTCCCCAGCT...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR CCA 90 bp AAGCCTCCTTCCCCTGCATGTGTGTTAGATTCAGCCACAGTGCTTAGAAAACCATATTCTTCAACATCATaGAGACTGAGAGGAGGGAAA +
Preference number: 2 (lower is better)
Translates to: KPPSPACVLDSATVLRKPYSSTS*RLRGGK
Trigger: TTTCCCTCCTCTCAGTCTCCATGATGTTGAAGAATA...TGGTTTTCTAAGCACTGTGGCTGAATCTAACACACATGCAGGGGAAGGAGGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
3UTR-3UTR CCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTTATTCTTCAACATCATaGAGACTGAGAGGAGGGAAA +
Preference number: 2 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLYSSTS*RLRGGK
Trigger: TTTCCCTCCTCTCAGTCTCCATGATGTTGAAGAATA...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR CCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGAGCCAAAATACATGGTaGACACACGAGAAAACAGGT +
Preference number: 2 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQSQNTW*THEKTG
Trigger: ACCTGTTTTCTCGTGTGTCCACCATGTATTTTGGCT...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR CCA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGCCAAAATACATGGTaGACACACGAGAAAACAGGT +
Preference number: 2 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTSQNTW*THEKTG
Trigger: ACCTGTTTTCTCGTGTGTCCACCATGTATTTTGGCT...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR CCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGCTGGGGAAAGAGCTaGATTTCTGAAGTACAGTGT +
Preference number: 2 (lower is better)
Translates to: LKNAAELSNACTFFCQELSWGKS*ISEVQC
Trigger: ACACTGTACTTCAGAAATCCAGCTCTTTCCCCAGCT...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR TCA 90 bp TTGAAATTGCATTCTTTGGGAAATGGAAGAATGAAACCCAGTCTACGGCGCCATAAAGAGCTGGATTTCTaGAGTACAGTGTTCAGAGAG +
Preference number: 2 (lower is better)
Translates to: LKLHSLGNGRMKPSLRRHKELDF*STVFRE
Trigger: CTCTCTGAACACTGTACTTCAGAAATCCAGCTCTTT...ATGGCGCCGTAGACTGGGTTTCATTCTTCCATTTCCCAAAGAATGCAATTTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
3UTR-3UTR TCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAAGCCTCGCACTaGATATTAACCAAACCATCA +
Preference number: 2 (lower is better)
Translates to: LKNAAELSNACTFFCQELREASH*ILTKPS
Trigger: TGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCT...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR TCA 90 bp TTGAAATTGCATTCTTTGGGAAATGGAAGAATGAAACCCAGTCTACGGCGCCATATTTTGAGATGTCTTTaGAGAGTCCACAAGTCCAGG +
Preference number: 2 (lower is better)
Translates to: LKLHSLGNGRMKPSLRRHILRCL*RVHKSR
Trigger: CCTGGACTTGTGGACTCTTCAAAGACATCTCAAAAT...ATGGCGCCGTAGACTGGGTTTCATTCTTCCATTTCCCAAAGAATGCAATTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
3UTR-3UTR GCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCTAACTTGCATTCCTTaGTCTGTGGGCACTGAGGGG +
Preference number: 2 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVLTCIP*SVGTEG
Trigger: CCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR GCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGCAGCTAGCGACTTCCTaGTTTGTGCAGGAGAAGATG +
Preference number: 2 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQQLATS*FVQEKM
Trigger: CATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTG...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR CCA 90 bp ATTCAAATGAAAGGCAGAGTCTGTGTATGGTTCTTTAGAAGCCTAAGCTTGCGTGAATTAGGTGCTACTTaGCTTCTGGAGACACAAAGG +
Preference number: 2 (lower is better)
Translates to: IQMKGRVCVWFFRSLSLRELGAT*LLETQR
Trigger: CCTTTGTGTCTCCAGAAGCCAAGTAGCACCTAATTC...ACGCAAGCTTAGGCTTCTAAAGAACCATACACAGACTCTGCCTTTCATTTGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
3UTR CAA 90 bp ACAAGGAGAGCCAAAATACATGGTGGACACACGAGAAAACAGGTATaGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATACTCAATACG +
Preference number: 2 (lower is better)
Translates to: TRRAKIHGGHTRKQV*PVILTKGLSEILNT
Trigger: CGTATTGAGTATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTGTCCACCATGTATTTTGGCTCTCCTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CAA 90 bp TGGCTTTTACTTATATGCAAGTCTATGGAGTTGAAATTGCATTCTTaGGGAAATGGAAGAATGAAACCCAGTCTACGGCGCCATGTAGTT +
Preference number: 2 (lower is better)
Translates to: WLLLICKSMELKLHS*GNGRMKPSLRRHVV
Trigger: AACTACATGGCGCCGTAGACTGGGTTTCATTCTTCCATTTCCCAAAGAATGCAATTTCAACTCCATAGACTTGCATATAAGTAAAAGCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
3UTR-3UTR TCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAAAAGAGCTGGATTTCTaGAGTACAGTGTTCAGAGAG +
Preference number: 2 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIKELDF*STVFRE
Trigger: CTCTCTGAACACTGTACTTCAGAAATCCAGCTCTTT...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR TCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCAACAAGAGGGAAAGATaGCATTTGTGGGCATCCAGG +
Preference number: 2 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVNKRER*HLWASR
Trigger: CCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTT...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR-3UTR CCA 90 bp TTGAAATTGCATTCTTTGGGAAATGGAAGAATGAAACCCAGTCTACGGCGCCATCTTTTTAAAAATCCATaGAACGGCTCCACAAATACG +
Preference number: 2 (lower is better)
Translates to: LKLHSLGNGRMKPSLRRHLFKNP*NGSTNT
Trigger: CGTATTTGTGGAGCCGTTCCATGGATTTTTAAAAAG...ATGGCGCCGTAGACTGGGTTTCATTCTTCCATTTCCCAAAGAATGCAATTTCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
3UTR-3UTR CCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATATATTCTTCAACATCATaGAGACTGAGAGGAGGGAAA +
Preference number: 2 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIYSSTS*RLRGGK
Trigger: TTTCCCTCCTCTCAGTCTCCATGATGTTGAAGAATA...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR GCA 72 bp GGAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTaGCTGGGCATCTCAGTGGTATACTGTGGGAAACAA +
Preference number: 3 (lower is better)
Translates to: GGARLRLRACVQ*LGISVVYCGKQ
Trigger: TTGTTTCCCACAGTATACCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CCA 72 bp TTACCTCCCCATCTCCTCCCAAGGCTCAGTGATCATTaGAAGAGGACCTGGAGAGACGGTGAGAGACAGAGG +
Preference number: 3 (lower is better)
Translates to: LPPHLLPRLSDH*KRTWRDGERQR
Trigger: CCTCTGTCTCTCACCGTCTCTCCAGGTCCTCTTCCAATGATCACTGAGCCTTGGGAGGAGATGGGGAGGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
3UTR TCA 72 bp AGCATGGGTAAGGGGGAACAGAACAAGAGGGAAAGATaGCATTTGTGGGCATCCAGGGGTCCAGCTAGCGAC +
Preference number: 3 (lower is better)
Translates to: SMGKGEQNKRER*HLWASRGPASD
Trigger: GTCGCTAGCTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCTTACCCATGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR TCA 72 bp TGCACCAAATCCCAGCATGGAGAGGGGAGGTGGATATaGAGTTCCACCCCTAGCCAAGAACTGTTGGCAATT +
Preference number: 3 (lower is better)
Translates to: CTKSQHGEGRWI*SSTPSQELLAI
Trigger: AATTGCCAACAGTTCTTGGCTAGGGGTGGAACTTCATATCCACCTCCCCTCTCCATGCTGGGATTTGGTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
3UTR CCA 72 bp GGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTaGTATACTGTGGGAAACAAACTGCTGACAGTACTC +
Preference number: 3 (lower is better)
Translates to: GSELVFSAWASQ*YTVGNKLLTVL
Trigger: GAGTACTGTCAGCAGTTTGTTTCCCACAGTATACCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CCA 72 bp CAGAGAGTAAGAGCCTGCAGAATACTCAGCCCTAAATaGAGCATCTATTACCTCCCCATCTCCTCCCAAGGC +
Preference number: 3 (lower is better)
Translates to: QRVRACRILSPK*SIYYLPISSQG
Trigger: GCCTTGGGAGGAGATGGGGAGGTAATAGATGCTCCATTTAGGGCTGAGTATTCTGCAGGCTCTTACTCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
3UTR GCA 72 bp AGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTaGAGCATGGGTAAGGGGGAACAGAACAAGAGGGAA +
Preference number: 3 (lower is better)
Translates to: RVHKSRKKYRKC*SMGKGEQNKRE
Trigger: TTCCCTCTTGTTCTGTTCCCCCTTACCCATGCTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CCA 72 bp ACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGCATaGGTAAGGGGGAACAGAACAAGAGGGAAAGATGAC +
Preference number: 3 (lower is better)
Translates to: TSPGRSTGSVAA*VRGNRTRGKDD
Trigger: GTCATCTTTCCCTCTTGTTCTGTTCCCCCTTACCCATGCTGCAACACTTCCTGTACTTCTTCCTGGACTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR GCA 72 bp AGTACTCTGGTATTCTATGAGCTAACTTGCATTCCTTaGTCTGTGGGCACTGAGGGGATGCTTAGAAACACC +
Preference number: 3 (lower is better)
Translates to: STLVFYELTCIP*SVGTEGMLRNT
Trigger: GGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATACCAGAGTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CCA 72 bp GGTGGATATGAAGTTCCACCCCTAGCCAAGAACTGTTaGCAATTGATAGCTATAACTCTCCTGAGCCTAGAG +
Preference number: 3 (lower is better)
Translates to: GGYEVPPLAKNC*QLIAITLLSLE
Trigger: CTCTAGGCTCAGGAGAGTTATAGCTATCAATTGCCAACAGTTCTTGGCTAGGGGTGGAACTTCATATCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
3UTR CCA 72 bp TCCCGGATATATTCAATGTCCTCTTTGCTTGTCAGCTaGGGCATTCCTGTCATCAGCATCATGGAGAACAAG +
Preference number: 3 (lower is better)
Translates to: SRIYSMSSLLVS*GIPVISIMENK
Trigger: CTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATATCCGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
3UTR TCA 72 bp AGACAGCGTAGTTTTAGAACAGTTACTTCCCAGGGATaGGGAGATGTTTTTGTAGCTCGTTATGAGCCAGGG +
Preference number: 3 (lower is better)
Translates to: RQRSFRTVTSQG*GDVFVARYEPG
Trigger: CCCTGGCTCATAACGAGCTACAAAAACATCTCCTCATCCCTGGGAAGTAACTGTTCTAAAACTACGCTGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
3UTR TCA 72 bp TGCACAGTCCATCCTTTGTCTCTGCAGACTTCGATCTaGTCAAGGAAATATTTCTTAGCGTCCTCCTCGCTT +
Preference number: 3 (lower is better)
Translates to: CTVHPLSLQTSI*SRKYFLASSSL
Trigger: AAGCGAGGAGGACGCTAAGAAATATTTCCTTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGACTGTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
3UTR GCA 72 bp AATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTaGCAAGAGCTTAGAGAACACAAGGAGAGCCAAAAT +
Preference number: 3 (lower is better)
Translates to: NAAELSNACTFF*QELREHKESQN
Trigger: ATTTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR GCA 72 bp CACCCTTTAAAGAATGCAGCAGAGCTTAGCAATGCTTaGACCTTTTTCTGCCAAGAGCTTAGAGAACACAAG +
Preference number: 3 (lower is better)
Translates to: HPLKNAAELSNA*TFFCQELREHK
Trigger: CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAAAGGGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR GCA 72 bp TTGATGCCAAGAACAAGATGTAGGAACCAGTTAAACTaGACAGTCCATCCTTTGTCTCTGCAGACTTCGATC +
Preference number: 3 (lower is better)
Translates to: LMPRTRCRNQLN*TVHPLSLQTSI
Trigger: GATCGAAGTCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTGGTTCCTACATCTTGTTCTTGGCATCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
3UTR TCA 72 bp CTGAGAGGAGGGAAAAGGAACAGAGAAGCCTCGCACTaGATATTAACCAAACCATCAGTAATGCCAACATTT +
Preference number: 3 (lower is better)
Translates to: LRGGKRNREASH*ILTKPSVMPTF
Trigger: AAATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTCCTTTTCCCTCCTCTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CCA 72 bp GAGCTTAGAGAACACAAGGAGAGCCAAAATACATGGTaGACACACGAGAAAACAGGTATTGCCAGTTATTCT +
Preference number: 3 (lower is better)
Translates to: ELREHKESQNTW*THEKTGIASYS
Trigger: AGAATAACTGGCAATACCTGTTTTCTCGTGTGTCCACCATGTATTTTGGCTCTCCTTGTGTTCTCTAAGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CCA 72 bp GGTGCTACTTGGCTTCTGGAGACACAAAGGGAATGTTaGGTTCCTTCTAATGGAAGTGTCTATTTTGACAAT +
Preference number: 3 (lower is better)
Translates to: GATWLLETQREC*VPSNGSVYFDN
Trigger: ATTGTCAAAATAGACACTTCCATTAGAAGGAACCCAACATTCCCTTTGTGTCTCCAGAAGCCAAGTAGCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
3UTR CCA 72 bp GTTTCAGCAATTCAAATGAAAGGCAGAGTCTGTGTATaGTTCTTTAGAAGCCTAAGCTTGCGTCCCATTTGT +
Preference number: 3 (lower is better)
Translates to: VSAIQMKGRVCV*FFRSLSLRPIC
Trigger: ACAAATGGGACGCAAGCTTAGGCTTCTAAAGAACCATACACAGACTCTGCCTTTCATTTGAATTGCTGAAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
3UTR TCA 72 bp GGCATACTAAGCAAGGCTGCTCTAAGCTATTTAAACTaGGAATATTCTTCAACATCATGGAGACTGAGAGGA +
Preference number: 3 (lower is better)
Translates to: GILSKAALSYLN*EYSSTSWRLRG
Trigger: TCCTCTCAGTCTCCATGATGTTGAAGAATATTCTCAGTTTAAATAGCTTAGAGCAGCCTTGCTTAGTATGCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR GCA 72 bp ACTCAATACGAGATCGTCAGGCATACTAAGCAAGGCTaGTCTAAGCTATTTAAACTGAGAATATTCTTCAAC +
Preference number: 3 (lower is better)
Translates to: TQYEIVRHTKQG*SKLFKLRIFFN
Trigger: GTTGAAGAATATTCTCAGTTTAAATAGCTTAGAGCAGCCTTGCTTAGTATGCCTGACGATCTCGTATTGAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR GCA 72 bp TGCTGTTTTATCTATAGATTAGTATATCTCTCAGCCTaGATCAGAGCAGTGTCTGTTTGCATAGATGATGAT +
Preference number: 3 (lower is better)
Translates to: CCFIYRLVYLSA*IRAVSVCIDDD
Trigger: ATCATCATCTATGCAAACAGACACTGCTCTGATGCAGGCTGAGAGATATACTAATCTATAGATAAAACAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
3UTR TCA 72 bp GAGTCTTATTGCGTTTTAAATCTTAACGCTGATGATTaGCATGCTGATCTAAAAGCTCCAGAACACTACATT +
Preference number: 3 (lower is better)
Translates to: ESYCVLNLNADD*HADLKAPEHYI
Trigger: AATGTAGTGTTCTGGAGCTTTTAGATCAGCATGTCAATCATCAGCGTTAAGATTTAAAACGCAATAAGACTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR GCA 72 bp ATTGTCATTAATATAGGACTAACAGCTTCCAAATCATaGTATAGAATTCCCAAAATGACCCTTCATGACTTG +
Preference number: 3 (lower is better)
Translates to: IVINIGLTASKS*YRIPKMTLHDL
Trigger: CAAGTCATGAAGGGTCATTTTGGGAATTCTATAGCATGATTTGGAAGCTGTTAGTCCTATATTAATGACAAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR TCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGTTTCTGGAGTCTTGCTaGTGCGCTGGCTGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWFLESC*CAGWWA
Trigger: TGCCCACCAGCCAGCGCATCAGCAAGACTCCAGAAA...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGGCTGCCCTGCTCCTCTaGCTTGCCAGATATCTGCCA +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWAALLL*LARYLP
Trigger: TGGCAGATATCTGGCAAGGCAGAGGAGCAGGGCAGC...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TCACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGGCGCGTGCACCAAATCCCCACTCTCGTGGTCCTTaGCATGGATGGTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: SQQLGQAPGKLRARAPNPHSRGP*HGWSAA
Trigger: AGCAGCTGACCATCCATGGCAAGGACCACGAGAGTG...GGGATTTGGTGCACGCGCCCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR CCA 90 bp ACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGGCGCGTGCACCAAATCCCAGTGTTCCACATTGCCATaGCCAGCCACATGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: TAARTSPRKAQGACTKSQCSTLP*PATCSS
Trigger: GCTGCTGCATGTGGCTGGCCATGGCAATGTGGAACA...CTGGGATTTGGTGCACGCGCCCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR CCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGTGTACCACGTGGATCTaGCCAGGGCTCTTGTGCATC +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWCTTWI*PGLLCI
Trigger: GATGCACAAGAGCCCTGGCCAGATCCACGTGGTACA...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGCTGGTGGTACCGCGGTaGATGACGATGAAGATGCAG +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWLVVPR*MTMKMQ
Trigger: CTGCATCTTCATCGTCATCCACCGCGGTACCACCAG...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GCAGCTGCACATATGAACTCACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGGCTCGTGGTAGCCGGTaGCTCCAGTGCAGTCATCCA +
Preference number: 4 (lower is better)
Translates to: AAAHMNSQQLGQAPGKLRARGSR*LQCSHP
Trigger: TGGATGACTGCACTGGAGTCACCGGCTACCACGAGC...CCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGTGAGTTCATATGTGCAGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR TCA 90 bp ACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGGCGCGTGCACCAAATCCCAGCGCTTTTTCCCACGGTaGGGGCATCCCGGATATATT +
Preference number: 4 (lower is better)
Translates to: TAARTSPRKAQGACTKSQRFFPR*GHPGYI
Trigger: AATATATCCGGGATGCCCTCACCGTGGGAAAAAGCG...CTGGGATTTGGTGCACGCGCCCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR GCA 90 bp CCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGAGGCTGCCTGCTGCGCTaGGTGGCTTCATCCTCCGGC +
Preference number: 4 (lower is better)
Translates to: PLCLSAGAFLSSASWRTRGCLLR*VASSSG
Trigger: GCCGGAGGATGAAGCCACGCAGCGCAGCAGGCAGCC...TCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGCCATGGAAGACAGGCTaGCTGCTGCGCTGCGTGGCT +
Preference number: 4 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQPWKTG*LLRCVA
Trigger: AGCCACGCAGCGCAGCAGGCAGCCTGTCTTCCATGG...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGAGGCAGTCTAGGGTCTaGACCACTTGGTACCTGTCA +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWRQSRV*TTWYLS
Trigger: TGACAGGTACCAAGTGGTGCAGACCCTAGACTGCCT...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGGTGAACACACTCTCGTaGTCCTTGCCATGGATGGTC +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWVNTLS*SLPWMV
Trigger: GACCATCCATGGCAAGGACCACGAGAGTGTGTTCAC...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGCCCACTGGAAATTTTTaGGGGGTGTTTCACCCACCA +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWPTGNF*GVFHPP
Trigger: TGGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGG...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGGTGGATCTGTGGCTATaGTCGCCTCCAATTGCTTTC +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWVDLWL*SPPIAF
Trigger: GAAAGCAATTGGAGGCGATCATAGCCACAGATCCAC...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCAGCTGCACATATGAACTCACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGGCTGCCCTGCTCCTCTaGCTTGCCAGATATCTGCCA +
Preference number: 4 (lower is better)
Translates to: AAAHMNSQQLGQAPGKLRAALLL*LARYLP
Trigger: TGGCAGATATCTGGCAAGGCAGAGGAGCAGGGCAGC...CCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGTGAGTTCATATGTGCAGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR GCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGGGCCACACAGTAGCCTaGACAGGAGTAAACAAACCT +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWGHTVA*TGVNKP
Trigger: AGGTTTGTTTACTCCTGTGCAGGCTACTGTGTGGCC...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAGCCTGCTGCGCTGCGTaGCTTCATCCTCCGGCGCCG +
Preference number: 4 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTACCAA*LHPPAP
Trigger: CGGCGCCGGAGGATGAAGCCACGCAGCGCAGCAGGC...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGCCTGCTGCGCTGCGTaGCTTCATCCTCCGGCGCCG +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKACCAA*LHPPAP
Trigger: CGGCGCCGGAGGATGAAGCCACGCAGCGCAGCAGGC...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAACTCCGCAGCCACACTaGTCTCCAGTGCGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: VQLATSCFVQEKMTLAVITPQPH*SPVRAA
Trigger: GGCTGCGCGCACTGGAGACCAGTGTGGCTGCGGAGT...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTACTCCGCAGCCACACTaGTCTCCAGTGCGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLTPQPH*SPVRAA
Trigger: GGCTGCGCGCACTGGAGACCAGTGTGGCTGCGGAGT...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CTCCCAAGGCTCAGTGATCATTGGAAGAGGACCTGGAGAGACGGTGAGAGACAGTCGTGGTCCTTGCCATaGATGGTCAGCTGCTCGTGG +
Preference number: 4 (lower is better)
Translates to: LPRLSDHWKRTWRDGERQSWSLP*MVSCSW
Trigger: CCACGAGCAGCTGACCATCCATGGCAAGGACCACGA...CTGTCTCTCACCGTCTCTCCAGGTCCTCTTCCAATGATCACTGAGCCTTGGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR GCA 90 bp TTTCTTAGCGTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAGACAGGCTGCCTGCTaGGCTGCGTGGCTTCATCCT +
Preference number: 4 (lower is better)
Translates to: FLSVLLAFSHGEGIPDIFRQAAC*AAWLHP
Trigger: AGGATGAAGCCACGCAGCGCAGCAGGCAGCCTGTCT...GAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGACGCTAAGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp AAATATTTCTTAGCGTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATACACACTGGTCTCCAGTaGGCGCAGCCACACCTGAGC +
Preference number: 4 (lower is better)
Translates to: KYFLASSSLFPTVRASRIHTGLQ*AQPHLS
Trigger: GCTCAGGTGTGGCTGCGCGCACTGGAGACCAGTGTG...TATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGACGCTAAGAAATATTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGCAATTCTTTGTCCTCTaGTGTGAGGGGGTTAAGTGG +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWQFFVL*CEGVKW
Trigger: CCACTTAACCCCCTCACAGCAGAGGACAAAGAATTG...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGGCAACAATTTCTTGCTaGCCCCATTTCACTGAGCTG +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWATISC*PHFTEL
Trigger: CAGCTCAGTGAAATGGGGGCAGCAAGAAATTGTTGC...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGGACTTCATCTTTGAATaGCCCCGTGTTACCCACTGT +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWDFIFE*PRVTHC
Trigger: ACAGTGGGTAACACGGGGGCATTCAAAGATGAAGTC...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TCACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGGCGCGTGCACCAAATCCCGACTTCATCTTTGAATaGCCCCGTGTTACCCACTGT +
Preference number: 4 (lower is better)
Translates to: SQQLGQAPGKLRARAPNPDFIFE*PRVTHC
Trigger: ACAGTGGGTAACACGGGGGCATTCAAAGATGAAGTC...GGGATTTGGTGCACGCGCCCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR CCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGGTCTTGCTGATGCGCTaGCTGGTGGGCAGTACGAAC +
Preference number: 4 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQVLLMR*LVGSTN
Trigger: GTTCGTACTGCCCACCAGCCAGCGCATCAGCAAGAC...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CTCCCAAGGCTCAGTGATCATTGGAAGAGGACCTGGAGAGACGGTGAGAGACAGCTGGTGGTACCGCGGTaGATGACGATGAAGATGCAG +
Preference number: 4 (lower is better)
Translates to: LPRLSDHWKRTWRDGERQLVVPR*MTMKMQ
Trigger: CTGCATCTTCATCGTCATCCACCGCGGTACCACCAG...CTGTCTCTCACCGTCTCTCCAGGTCCTCTTCCAATGATCACTGAGCCTTGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR CCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGCACTGCCTCACCCACTaGAAATTTTTGAGGGGTGTT +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWHCLTH*KFLRGV
Trigger: AACACCCCTCAAAAATTTCCAGTGGGTGAGGCAGTG...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp ACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGGCGCGTGCACCAAATCCCAGCACTGCCTCACCCACTaGAAATTTTTGAGGGGTGTT +
Preference number: 4 (lower is better)
Translates to: TAARTSPRKAQGACTKSQHCLTH*KFLRGV
Trigger: AACACCCCTCAAAAATTTCCAGTGGGTGAGGCAGTG...CTGGGATTTGGTGCACGCGCCCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR TCA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTGCTCGTGGTAGCCGGTaGCTCCAGTGCAGTCATCCA +
Preference number: 4 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLARGSR*LQCSHP
Trigger: TGGATGACTGCACTGGAGTCACCGGCTACCACGAGC...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGTCTAGCTCATCATCGTaGACATTGCTGATGTCAGTG +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWSSSSS*TLLMSV
Trigger: CACTGACATCAGCAATGTGCACGATGATGAGCTAGA...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TTCTTAGCGTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAGCTGCCCTGCTCCTCTaGCTTGCCAGATATCTGCCA +
Preference number: 4 (lower is better)
Translates to: FLASSSLFPTVRASRIYSAALLL*LARYLP
Trigger: TGGCAGATATCTGGCAAGGCAGAGGAGCAGGGCAGC...TGAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGACGCTAAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp CAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGATCAGGGGTGGGCCGGTaGTTAGGCAAAGCTATGGGG +
Preference number: 4 (lower is better)
Translates to: QCPLCLSAGAFLSSASWRSGVGR*LGKAMG
Trigger: CCCCATAGCTTTGCCTAAGCACCGGCCCACCCCTGA...TCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp CTCCCAAGGCTCAGTGATCATTGGAAGAGGACCTGGAGAGACGGTGAGAGACAGTGCTGTGTGAAGTCCTaGAACATGGCTGTGCCACAG +
Preference number: 4 (lower is better)
Translates to: LPRLSDHWKRTWRDGERQCCVKS*NMAVPQ
Trigger: CTGTGGCACAGCCATGTTGCAGGACTTCACACAGCA...CTGTCTCTCACCGTCTCTCCAGGTCCTCTTCCAATGATCACTGAGCCTTGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR CCA 90 bp CTTTCTGCATTTTTCAGAGCACCACCAAAACCAGTAGAGTCATATTGGACCAAGGCCTGCTGCGCTGCGTaGCTTCATCCTCCGGCGCCG +
Preference number: 4 (lower is better)
Translates to: LSAFFRAPPKPVESYWTKACCAA*LHPPAP
Trigger: CGGCGCCGGAGGATGAAGCCACGCAGCGCAGCAGGC...CTTGGTCCAATATGACTCTACTGGTTTTGGTGGTGCTCTGAAAAATGCAGAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAAGCCTGCTGCGCTGCGTaGCTTCATCCTCCGGCGCCG +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKACCAA*LHPPAP
Trigger: CGGCGCCGGAGGATGAAGCCACGCAGCGCAGCAGGC...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CTGCACAGTCCATCCTTTGTCTCTGCAGACTTCGATCTGATCAAGGAAATATTTGCCTGCTGCGCTGCGTaGCTTCATCCTCCGGCGCCG +
Preference number: 4 (lower is better)
Translates to: LHSPSFVSADFDLIKEIFACCAA*LHPPAP
Trigger: CGGCGCCGGAGGATGAAGCCACGCAGCGCAGCAGGC...AAATATTTCCTTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGACTGTGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp AGATGTAGGAACCAGTTAAACTGCACAGTCCATCCTTTGTCTCTGCAGACTTCGACTCCGCAGCCACACTaGTCTCCAGTGCGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: RCRNQLNCTVHPLSLQTSTPQPH*SPVRAA
Trigger: GGCTGCGCGCACTGGAGACCAGTGTGGCTGCGGAGT...CGAAGTCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTGGTTCCTACATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGTGTACCACGTGGATCTaGCCAGGGCTCTTGTGCATC +
Preference number: 4 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQCTTWI*PGLLCI
Trigger: GATGCACAAGAGCCCTGGCCAGATCCACGTGGTACA...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGAGCTGGGCTTTGCCCTTaGACTCGGAGCCTGGAGTCT +
Preference number: 4 (lower is better)
Translates to: PLCLSAGAFLSSASWRTRAGLCP*TRSLES
Trigger: AGACTCCAGGCTCCGAGTCCAAGGGCAAAGCCCAGC...TCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATATTTCTGGAGTCTTGCTaGTGCGCTGGCTGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: VQLATSCFVQEKMTLAVIFLESC*CAGWWA
Trigger: TGCCCACCAGCCAGCGCATCAGCAAGACTCCAGAAA...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp TCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAATGTCCTCTTTGTTTCTGGAGTCTTGCTaGTGCGCTGGCTGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: SSLFPTVRASRIYSMSSLFLESC*CAGWWA
Trigger: TGCCCACCAGCCAGCGCATCAGCAAGACTCCAGAAA...CAAAGAGGACATTGAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGCGCTTTTTCCCACGGTaGGGGCATCCCGGATATATT +
Preference number: 4 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQRFFPR*GHPGYI
Trigger: AATATATCCGGGATGCCCTCACCGTGGGAAAAAGCG...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAAGGCTGCCTGCTGCGCTaGGTGGCTTCATCCTCCGGC +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKGCLLR*VASSSG
Trigger: GCCGGAGGATGAAGCCACGCAGCGCAGCAGGCAGCC...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTGGCTGCCTGCTGCGCTaGGTGGCTTCATCCTCCGGC +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELGCLLR*VASSSG
Trigger: GCCGGAGGATGAAGCCACGCAGCGCAGCAGGCAGCC...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAACCATGGAAGACAGGCTaGCTGCTGCGCTGCGTGGCT +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKPWKTG*LLRCVA
Trigger: AGCCACGCAGCGCAGCAGGCAGCCTGTCTTCCATGG...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CTCCCAAGGCTCAGTGATCATTGGAAGAGGACCTGGAGAGACGGTGAGAGACAGTCATCTGTTCCACATTaGCATGGCCAGCCACATGCA +
Preference number: 4 (lower is better)
Translates to: LPRLSDHWKRTWRDGERQSSVPH*HGQPHA
Trigger: TGCATGTGGCTGGCCATGGCAATGTGGAACAGATGA...CTGTCTCTCACCGTCTCTCCAGGTCCTCTTCCAATGATCACTGAGCCTTGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR GCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTTCAGGGGTGGGCCGGTaGTTAGGCAAAGCTATGGGG +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLSGVGR*LGKAMG
Trigger: CCCCATAGCTTTGCCTAAGCACCGGCCCACCCCTGA...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGTTGCAGTCCAGGAGCTaGATGGTTAAGCCAACGTCC +
Preference number: 4 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQLQSRS*MVKPTS
Trigger: GGACGTTGGCTTAACCATGCAGCTCCTGGACTGCAA...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAATGTCCTCTTGCAGTCCAGGAGCTaGATGGTTAAGCCAACGTCC +
Preference number: 4 (lower is better)
Translates to: VLLAFSHGEGIPDIFNVLLQSRS*MVKPTS
Trigger: GGACGTTGGCTTAACCATGCAGCTCCTGGACTGCAA...GAGGACATTGAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATATCGTGGTCCTTGCCATaGATGGTCAGCTGCTCGTGG +
Preference number: 4 (lower is better)
Translates to: VQLATSCFVQEKMTLAVISWSLP*MVSCSW
Trigger: CCACGAGCAGCTGACCATCCATGGCAAGGACCACGA...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GCAGCTGCACATATGAACTCACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGTGTGAGGGGGTTAAGTaGATCTGTGGCTATGATCGC +
Preference number: 4 (lower is better)
Translates to: AAAHMNSQQLGQAPGKLRCEGVK*ICGYDR
Trigger: GCGATCATAGCCACAGATCCACTTAACCCCCTCACA...CCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGTGAGTTCATATGTGCAGCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR CCA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGCTTCAGCAGGAATCTaGCCAGCGCACTGTCGTGGT +
Preference number: 4 (lower is better)
Translates to: VQLATSCFVQEKMTLAVIASAGI*PAHCRG
Trigger: ACCACGACAGTGCGCTGGCCAGATTCCTGCTGAAGC...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGCTAACACAGACATCCTaGAATTTCTGGAAGTGTGGA +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWLTQTS*NFWKCG
Trigger: TCCACACTTCCAGAAATTCCAGGATGTCTGTGTTAG...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGGCTCGTGGTAGCCGGTaGCTCCAGTGCAGTCATCCA +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQARGSR*LQCSHP
Trigger: TGGATGACTGCACTGGAGTCACCGGCTACCACGAGC...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGGTGGATCTGTGGCTATaGTCGCCTCCAATTGCTTTC +
Preference number: 4 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQVDLWL*SPPIAF
Trigger: GAAAGCAATTGGAGGCGATCATAGCCACAGATCCAC...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp TTTCTTAGCGTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCCCGGACATTCTCGTCTaGAAAGTTGCAGTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: FLSVLLAFSHGEGIPDIFPDILV*KVAVQE
Trigger: CTCCTGGACTGCAACTTTTCAGACGAGAATGTCCGG...GAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGACGCTAAGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp ACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGGCGCGTGCACCAAATCCCAGCTTTTGCTTAAGCTGTaGAATAACTTGGGAACTGAC +
Preference number: 4 (lower is better)
Translates to: TAARTSPRKAQGACTKSQLLLKL*NNLGTD
Trigger: GTCAGTTCCCAAGTTATTTCACAGCTTAAGCAAAAG...CTGGGATTTGGTGCACGCGCCCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR GCA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTGGCTGCCTGCTGCGCTaGGTGGCTTCATCCTCCGGC +
Preference number: 4 (lower is better)
Translates to: EQRSLALNINQTISNANIGCLLR*VASSSG
Trigger: GCCGGAGGATGAAGCCACGCAGCGCAGCAGGCAGCC...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp ATTACATTCATAGAGAGAAGCACAGTTTCAGCACAGGGCATGGCCTGTACAGGAAGACAGGCTGCCTGCTaGGCTGCGTGGCTTCATCCT +
Preference number: 4 (lower is better)
Translates to: ITFIERSTVSAQGMACTGRQAAC*AAWLHP
Trigger: AGGATGAAGCCACGCAGCGCAGCAGGCAGCCTGTCT...TCCTGTACAGGCCATGCCCTGTGCTGAAACTGTGCTTCTCTCTATGAATGTAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR GCA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGACAGGCTGCCTGCTaGGCTGCGTGGCTTCATCCT +
Preference number: 4 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTRQAAC*AAWLHP
Trigger: AGGATGAAGCCACGCAGCGCAGCAGGCAGCCTGTCT...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGAGACAGGCTGCCTGCTaGGCTGCGTGGCTTCATCCT +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQRQAAC*AAWLHP
Trigger: AGGATGAAGCCACGCAGCGCAGCAGGCAGCCTGTCT...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCACCATGGAAGACAGGCTaGCTGCTGCGCTGCGTGGCT +
Preference number: 4 (lower is better)
Translates to: YIQCPLCLSAGAFLSSASPWKTG*LLRCVA
Trigger: AGCCACGCAGCGCAGCAGGCAGCCTGTCTTCCATGG...TGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGACACACTGGTCTCCAGTaGGCGCAGCCACACCTGAGC +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRHTGLQ*AQPHLS
Trigger: GCTCAGGTGTGGCTGCGCGCACTGGAGACCAGTGTG...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATACACTCTCGTGGTCCTTaGCATGGATGGTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: VQLATSCFVQEKMTLAVIHSRGP*HGWSAA
Trigger: AGCAGCTGACCATCCATGGCAAGGACCACGAGAGTG...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATATGGCAGAGGACTTGTTaGCCGTGCTGGATGTTCGCT +
Preference number: 4 (lower is better)
Translates to: VQLATSCFVQEKMTLAVIWQRTC*PCWMFA
Trigger: AGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCA...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AAATATTTCTTAGCGTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATACCAGAGTACCTCTTCTaGGAAGGGCTTAGGGCTGGT +
Preference number: 4 (lower is better)
Translates to: KYFLASSSLFPTVRASRIPEYLF*EGLRAG
Trigger: ACCAGCCCTAAGCCCTTCGCAGAAGAGGTACTCTGG...TATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGACGCTAAGAAATATTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTCCAGAGTACCTCTTCTaGGAAGGGCTTAGGGCTGGT +
Preference number: 4 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLPEYLF*EGLRAG
Trigger: ACCAGCCCTAAGCCCTTCGCAGAAGAGGTACTCTGG...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGTCAGGGGTGGGCCGGTaGTTAGGCAAAGCTATGGGG +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQSGVGR*LGKAMG
Trigger: CCCCATAGCTTTGCCTAAGCACCGGCCCACCCCTGA...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAATGTCCTCCTCCAGTTTCTGAACTaGAATGGCCCGGACATTCTC +
Preference number: 4 (lower is better)
Translates to: VLLAFSHGEGIPDIFNVLLQFLN*NGPDIL
Trigger: GAGAATGTCCGGGCCATTGCAGTTCAGAAACTGGAG...GAGGACATTGAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp GTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAATGTCCTCGGCCACACAGTAGCCTaGACAGGAGTAAACAAACCT +
Preference number: 4 (lower is better)
Translates to: VLLAFSHGEGIPDIFNVLGHTVA*TGVNKP
Trigger: AGGTTTGTTTACTCCTGTGCAGGCTACTGTGTGGCC...GAGGACATTGAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTGTCTTGCTGATGCGCTaGCTGGTGGGCAGTACGAAC +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLVLLMR*LVGSTN
Trigger: GTTCGTACTGCCCACCAGCCAGCGCATCAGCAAGAC...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATATGTTCCACATTGCCATaGCCAGCCACATGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: VQLATSCFVQEKMTLAVICSTLP*PATCSS
Trigger: GCTGCTGCATGTGGCTGGCCATGGCAATGTGGAACA...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTACTCCGCAGCCACACTaGTCTCCAGTGCGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELTPQPH*SPVRAA
Trigger: GGCTGCGCGCACTGGAGACCAGTGTGGCTGCGGAGT...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGATGTACCACGTGGATCTaGCCAGGGCTCTTGTGCATC +
Preference number: 4 (lower is better)
Translates to: PLCLSAGAFLSSASWRTRCTTWI*PGLLCI
Trigger: GATGCACAAGAGCCCTGGCCAGATCCACGTGGTACA...TCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp TCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGCTGGTGGTACCGCGGTaGATGACGATGAAGATGCAG +
Preference number: 4 (lower is better)
Translates to: SMSSLLVSWGIPVISIMELVVPR*MTMKMQ
Trigger: CTGCATCTTCATCGTCATCCACCGCGGTACCACCAG...CTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp CCGGATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGGGGCTGGTTCTCCTTTaGCAGAGGACTTGTTGCCCG +
Preference number: 4 (lower is better)
Translates to: PDIFNVLFACQLGHSCHQGLVLL*QRTCCP
Trigger: CGGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCC...CTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATATCCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAGCTGGGCTTTGCCCTTaGACTCGGAGCCTGGAGTCT +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKAGLCP*TRSLES
Trigger: AGACTCCAGGCTCCGAGTCCAAGGGCAAAGCCCAGC...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGAATTGTCCAGCAGGATaGAAATGGACATTGAGTTCT +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWNCPAG*KWTLSS
Trigger: AGAACTCAATGTCCATTTCCATCCTGCTGGACAATT...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGGTTTCTGAACTGCAATaGCCCGGACATTCTCGTCTG +
Preference number: 4 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQVSELQ*PGHSRL
Trigger: CAGACGAGAATGTCCGGGCCATTGCAGTTCAGAAAC...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GCAGCTGCACATATGAACTCACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGTCTGCTGATAGTGTCTaGACTGTGCGATCTCACTTC +
Preference number: 4 (lower is better)
Translates to: AAAHMNSQQLGQAPGKLRSADSV*TVRSHF
Trigger: GAAGTGAGATCGCACAGTCCAGACACTATCAGCAGA...CCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGTGAGTTCATATGTGCAGCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR TCA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATATTTCATCTCCGTTCTTaGGGCACTGCCTCACCCACT +
Preference number: 4 (lower is better)
Translates to: VQLATSCFVQEKMTLAVIFHLRS*GTASPT
Trigger: AGTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAA...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTTTTCATCTCCGTTCTTaGGGCACTGCCTCACCCACT +
Preference number: 4 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLFHLRS*GTASPT
Trigger: AGTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAA...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp TCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAATGTCCTCTTTGTTTCATCTCCGTTCTTaGGGCACTGCCTCACCCACT +
Preference number: 4 (lower is better)
Translates to: SSLFPTVRASRIYSMSSLFHLRS*GTASPT
Trigger: AGTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAA...CAAAGAGGACATTGAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp ACAAGATGTAGGAACCAGTTAAACTGCACAGTCCATCCTTTGTCTCTGCAGACTGCTCGTGGTAGCCGGTaGCTCCAGTGCAGTCATCCA +
Preference number: 4 (lower is better)
Translates to: TRCRNQLNCTVHPLSLQTARGSR*LQCSHP
Trigger: TGGATGACTGCACTGGAGTCACCGGCTACCACGAGC...AGTCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTGGTTCCTACATCTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTCCCACAAAGACACTGTaGACACACTCTCGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLPTKTL*THSRGP
Trigger: AGGACCACGAGAGTGTGTTCACAGTGTCTTTGTGGG...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTCTTCCACAAACACAGTaGGGTCGGTGTTCCGAGGCA +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLLPQTQ*GRCSEA
Trigger: TGCCTCGGAACACCGACCTCACTGTGTTTGTGGAAG...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGATGATCAACTTCCACAAACACAGTaGGGTCGGTGTTCCGAGGCA +
Preference number: 4 (lower is better)
Translates to: ACQLGHSCHQHHGEQDDQLPQTQ*GRCSEA
Trigger: TGCCTCGGAACACCGACCTCACTGTGTTTGTGGAAG...TTGATCATCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp CCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGAAGCCTTGCTGGACAGTaGTGGGGTTTTGCAGCAGTA +
Preference number: 4 (lower is better)
Translates to: PLCLSAGAFLSSASWRTRSLAGQ*WGFAAV
Trigger: TACTGCTGCAAAACCCCATCACTGTCCAGCAAGGCT...TCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTCCGGACATTCTCGTCTaGAAAGTTGCAGTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLPDILV*KVAVQE
Trigger: CTCCTGGACTGCAACTTTTCAGACGAGAATGTCCGG...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATACCGGACATTCTCGTCTaGAAAGTTGCAGTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: VQLATSCFVQEKMTLAVIPDILV*KVAVQE
Trigger: CTCCTGGACTGCAACTTTTCAGACGAGAATGTCCGG...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGAAAGCTCTCCAGTTTCTaGACTGCAATGGCCCGGACA +
Preference number: 4 (lower is better)
Translates to: PLCLSAGAFLSSASWRTRKLSSF*TAMART
Trigger: TGTCCGGGCCATTGCAGTTCAGAAACTGGAGAGCTT...TCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGCCCAAATGGACTCCATaGTGCGTAGAATCTGCAAGA +
Preference number: 4 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQPKWTP*CVESAR
Trigger: TCTTGCAGATTCTACGCATCATGGAGTCCATTTGGG...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CTTTCTGCATTTTTCAGAGCACCACCAAAACCAGTAGAGTCATATTGGACCAAGCCATGGAAGACAGGCTaGCTGCTGCGCTGCGTGGCT +
Preference number: 4 (lower is better)
Translates to: LSAFFRAPPKPVESYWTKPWKTG*LLRCVA
Trigger: AGCCACGCAGCGCAGCAGGCAGCCTGTCTTCCATGG...CTTGGTCCAATATGACTCTACTGGTTTTGGTGGTGCTCTGAAAAATGCAGAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR GCA 90 bp CTTTCTGCATTTTTCAGAGCACCACCAAAACCAGTAGAGTCATATTGGACCAAGCACACTGGTCTCCAGTaGGCGCAGCCACACCTGAGC +
Preference number: 4 (lower is better)
Translates to: LSAFFRAPPKPVESYWTKHTGLQ*AQPHLS
Trigger: GCTCAGGTGTGGCTGCGCGCACTGGAGACCAGTGTG...CTTGGTCCAATATGACTCTACTGGTTTTGGTGGTGCTCTGAAAAATGCAGAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR GCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTCACACTGGTCTCCAGTaGGCGCAGCCACACCTGAGC +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELHTGLQ*AQPHLS
Trigger: GCTCAGGTGTGGCTGCGCGCACTGGAGACCAGTGTG...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTAGGCAGTCTAGGGTCTaGACCACTTGGTACCTGTCA +
Preference number: 4 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLRQSRV*TTWYLS
Trigger: TGACAGGTACCAAGTGGTGCAGACCCTAGACTGCCT...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAATGTCCTCTTTGAGGACTTGTTGCCCGTaGTGGATGTTCGCTTCCACA +
Preference number: 4 (lower is better)
Translates to: SSLFPTVRASRIYSMSSLRTCCP*WMFAST
Trigger: TGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCT...CAAAGAGGACATTGAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp CATCCCGGATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATGGCAGAGGACTTGTTaGCCGTGCTGGATGTTCGCT +
Preference number: 4 (lower is better)
Translates to: HPGYIQCPLCLSAGAFLSWQRTC*PCWMFA
Trigger: AGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCA...TGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATATCCGGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGAGAAGCTGGGCTTTaGCCTTGGACTCGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTREAGL*PWTRSL
Trigger: CAGGCTCCGAGTCCAAGGGCAAAGCCCAGCTTCTCT...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGAGAGAAGCTGGGCTTTaGCCTTGGACTCGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKREAGL*PWTRSL
Trigger: CAGGCTCCGAGTCCAAGGGCAAAGCCCAGCTTCTCT...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTCCTGCTCCTCTGCCTTaGCAGATATCTGCCACATGT +
Preference number: 4 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLPAPLP*QISATC
Trigger: ACATGTGGCAGATATCTGGCAAGGCAGAGGAGCAGG...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp ATTACATTCATAGAGAGAAGCACAGTTTCAGCACAGGGCATGGCCTGTACAGGAGCTGCCCTGCTCCTCTaGCTTGCCAGATATCTGCCA +
Preference number: 4 (lower is better)
Translates to: ITFIERSTVSAQGMACTGAALLL*LARYLP
Trigger: TGGCAGATATCTGGCAAGGCAGAGGAGCAGGGCAGC...TCCTGTACAGGCCATGCCCTGTGCTGAAACTGTGCTTCTCTCTATGAATGTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR GCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGATCAGGGGTGGGCCGGTaGTTAGGCAAAGCTATGGGG +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRSGVGR*LGKAMG
Trigger: CCCCATAGCTTTGCCTAAGCACCGGCCCACCCCTGA...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGCTTTCATATCGAAAATaGCAGAGCAATTCTTTGTCC +
Preference number: 4 (lower is better)
Translates to: EGQGSGSELVFSAWASQWLSYRK*QSNSLS
Trigger: GGACAAAGAATTGCTCTGGCATTTTCGATATGAAAG...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGGCAACAATTTCTTGCTaGCCCCATTTCACTGAGCTG +
Preference number: 4 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQATISC*PHFTEL
Trigger: CAGCTCAGTGAAATGGGGGCAGCAAGAAATTGTTGC...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCAGCTGCACATATGAACTCACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGTTGGCAACAATTTCTTaGTGCCCCCATTTCACTGAG +
Preference number: 4 (lower is better)
Translates to: AAAHMNSQQLGQAPGKLRLATIS*CPHFTE
Trigger: CTCAGTGAAATGGGGGCAGCAAGAAATTGTTGCCAA...CCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGTGAGTTCATATGTGCAGCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR CCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGGTCTTGCTGATGCGCTaGCTGGTGGGCAGTACGAAC +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQVLLMR*LVGSTN
Trigger: GTTCGTACTGCCCACCAGCCAGCGCATCAGCAAGAC...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAGAGGTGAGCTGCTTCTaGAAAGCCAAGGTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: QCPLCLSAGAFLSSASWREVSCF*KAKVSS
Trigger: TGAGGAGACCTTGGCTTTCCAGAAGCAGCTCACCTC...TCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp GCGGAGTGCTTTTCTCCTTGTTTGATGCCAAGAACAAGATGTAGGAACCAGTTACACCTCATCAAGGGCTaGGTCTGGAGGCGTGTCGAG +
Preference number: 4 (lower is better)
Translates to: AECFSPCLMPRTRCRNQLHLIKG*VWRRVE
Trigger: CTCGACACGCCTCCAGACCCAGCCCTTGATGAGGTG...TAACTGGTTCCTACATCTTGTTCTTGGCATCAAACAAGGAGAAAAGCACTCCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAATCGTGGTCCTTGCCATaGATGGTCAGCTGCTCGTGG +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKSWSLP*MVSCSW
Trigger: CCACGAGCAGCTGACCATCCATGGCAAGGACCACGA...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGTCGTGGTCCTTGCCATaGATGGTCAGCTGCTCGTGG +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQSWSLP*MVSCSW
Trigger: CCACGAGCAGCTGACCATCCATGGCAAGGACCACGA...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAGGGCTGGTTCTCCTTTaGCAGAGGACTTGTTGCCCG +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKGLVLL*QRTCCP
Trigger: CGGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCC...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGGCTTCAGCAGGAATCTaGCCAGCGCACTGTCGTGGT +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQASAGI*PAHCRG
Trigger: ACCACGACAGTGCGCTGGCCAGATTCCTGCTGAAGC...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACACATCTGCGGAGACCTTaGTGGTTTGGCTGGTGGTAC +
Preference number: 4 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTHLRRP*WFGWWY
Trigger: GTACCACCAGCCAAACCATCAAGGTCTCCGCAGATG...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAACATCTGCGGAGACCTTaGTGGTTTGGCTGGTGGTAC +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKHLRRP*WFGWWY
Trigger: GTACCACCAGCCAAACCATCAAGGTCTCCGCAGATG...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp AAGCCTCCTTCCCCTGCATGTGTGTTAGATTCAGCCACAGTGCTTAGAAAACCATCTTGGCCATCTTGGTaGAGAAGCTCTGGAGGATGG +
Preference number: 4 (lower is better)
Translates to: KPPSPACVLDSATVLRKPSWPSW*RSSGGW
Trigger: CCATCCTCCAGAGCTTCTTCACCAAGATGGCCAAGA...TGGTTTTCTAAGCACTGTGGCTGAATCTAACACACATGCAGGGGAAGGAGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR TCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAAGCTCGTGGTAGCCGGTaGCTCCAGTGCAGTCATCCA +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKARGSR*LQCSHP
Trigger: TGGATGACTGCACTGGAGTCACCGGCTACCACGAGC...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CCGGATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCCCACAAAGACACTGTaGACACACTCTCGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: PDIFNVLFACQLGHSCHQPTKTL*THSRGP
Trigger: AGGACCACGAGAGTGTGTTCACAGTGTCTTTGTGGG...CTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATATCCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTACGTCCAAAGCACTTTaGTCCCAGATCTCCCTTCTG +
Preference number: 4 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLTSKAL*SQISLL
Trigger: CAGAAGGGAGATCTGGGATCAAAGTGCTTTGGACGT...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAACGTCCAAAGCACTTTaGTCCCAGATCTCCCTTCTG +
Preference number: 4 (lower is better)
Translates to: VLFACQLGHSCHQHHGEQTSKAL*SQISLL
Trigger: CAGAAGGGAGATCTGGGATCAAAGTGCTTTGGACGT...TTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAAGCTCTCCAGTTTCTaGACTGCAATGGCCCGGACA +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLKLSSF*TAMART
Trigger: TGTCCGGGCCATTGCAGTTCAGAAACTGGAGAGCTT...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAATGTCCTCTATTTTGTCACCAGTTaGGATGCAACCGTAAGGCAG +
Preference number: 4 (lower is better)
Translates to: VLLAFSHGEGIPDIFNVLYFVTS*DATVRQ
Trigger: CTGCCTTACGGTTGCATCTCAACTGGTGACAAAATA...GAGGACATTGAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATATCAGGACTTCATCTTTaGATGCCCCCGTGTTACCCA +
Preference number: 4 (lower is better)
Translates to: VQLATSCFVQEKMTLAVISGLHL*MPPCYP
Trigger: TGGGTAACACGGGGGCATTCAAAGATGAAGTCCTGA...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGGGCTGCCTGCTGCGCTaGGTGGCTTCATCCTCCGGC +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQGCLLR*VASSSG
Trigger: GCCGGAGGATGAAGCCACGCAGCGCAGCAGGCAGCC...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGGCAGTCTAGGGTCTaGACCACTTGGTACCTGTCA +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLRQSRV*TTWYLS
Trigger: TGACAGGTACCAAGTGGTGCAGACCCTAGACTGCCT...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAATGTCCTCTCTAGCTCATCATCGTaGACATTGCTGATGTCAGTG +
Preference number: 4 (lower is better)
Translates to: VLLAFSHGEGIPDIFNVLSSSSS*TLLMSV
Trigger: CACTGACATCAGCAATGTGCACGATGATGAGCTAGA...GAGGACATTGAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGCACTCTCGTGGTCCTTaGCATGGATGGTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKHSRGP*HGWSAA
Trigger: AGCAGCTGACCATCCATGGCAAGGACCACGAGAGTG...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGTGGCAGAGGACTTGTTaGCCGTGCTGGATGTTCGCT +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQWQRTC*PCWMFA
Trigger: AGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCA...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAGAGAAGCTGGGCTTTaGCCTTGGACTCGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVREAGL*PWTRSL
Trigger: CAGGCTCCGAGTCCAAGGGCAAAGCCCAGCTTCTCT...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AAGCCTCCTTCCCCTGCATGTGTGTTAGATTCAGCCACAGTGCTTAGAAAACCACCTGCTCCTCTGCCTTaGCAGATATCTGCCACATGT +
Preference number: 4 (lower is better)
Translates to: KPPSPACVLDSATVLRKPPAPLP*QISATC
Trigger: ACATGTGGCAGATATCTGGCAAGGCAGAGGAGCAGG...TGGTTTTCTAAGCACTGTGGCTGAATCTAACACACATGCAGGGGAAGGAGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR GCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTCCTGCTCCTCTGCCTTaGCAGATATCTGCCACATGT +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLPAPLP*QISATC
Trigger: ACATGTGGCAGATATCTGGCAAGGCAGAGGAGCAGG...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTCTTGTCAGGATTGGTTaGGGATGTGAGCTTGTCAGC +
Preference number: 4 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLLVRIG*GCELVS
Trigger: GCTGACAAGCTCACATCCGCAACCAATCCTGACAAG...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAACTTGTCAGGATTGGTTaGGGATGTGAGCTTGTCAGC +
Preference number: 4 (lower is better)
Translates to: VLFACQLGHSCHQHHGEQLVRIG*GCELVS
Trigger: GCTGACAAGCTCACATCCGCAACCAATCCTGACAAG...TTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTTTGCAGTCCAGGAGCTaGATGGTTAAGCCAACGTCC +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLLQSRS*MVKPTS
Trigger: GGACGTTGGCTTAACCATGCAGCTCCTGGACTGCAA...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATACTCCAGTTTCTGAACTaGAATGGCCCGGACATTCTC +
Preference number: 4 (lower is better)
Translates to: VQLATSCFVQEKMTLAVILQFLN*NGPDIL
Trigger: GAGAATGTCCGGGCCATTGCAGTTCAGAAACTGGAG...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTTGCTGTGTGAAGTCCTaGAACATGGCTGTGCCACAG +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLCCVKS*NMAVPQ
Trigger: CTGTGGCACAGCCATGTTGCAGGACTTCACACAGCA...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAATGTCACCAGTTGAGATaGAACCGTAAGGCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: VLFACQLGHSCHQHHGEQCHQLR*NRKAEG
Trigger: GCCTTCTGCCTTACGGTTGCATCTCAACTGGTGACA...TTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp TATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCAGTCTTGCTGATGCGCTaGCTGGTGGGCAGTACGAAC +
Preference number: 4 (lower is better)
Translates to: YIQCPLCLSAGAFLSSASVLLMR*LVGSTN
Trigger: GTTCGTACTGCCCACCAGCCAGCGCATCAGCAAGAC...TGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTCACCTCATCAAGGGCTaGGTCTGGAGGCGTGTCGAG +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELHLIKG*VWRRVE
Trigger: CTCGACACGCCTCCAGACCCAGCCCTTGATGAGGTG...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GCGGAGTGCTTTTCTCCTTGTTTGATGCCAAGAACAAGATGTAGGAACCAGTTATCGTGGTCCTTGCCATaGATGGTCAGCTGCTCGTGG +
Preference number: 4 (lower is better)
Translates to: AECFSPCLMPRTRCRNQLSWSLP*MVSCSW
Trigger: CCACGAGCAGCTGACCATCCATGGCAAGGACCACGA...TAACTGGTTCCTACATCTTGTTCTTGGCATCAAACAAGGAGAAAAGCACTCCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp CTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGATGTGAACACACTCTCGTaGTCCTTGCCATGGATGGTC +
Preference number: 4 (lower is better)
Translates to: LFACQLGHSCHQHHGEQDVNTLS*SLPWMV
Trigger: GACCATCCATGGCAAGGACCACGAGAGTGTGTTCAC...ATCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp GGCATCCCGGATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTACTTGTTGCCCGTGCTaGATGTTCGCTTCCACAAAC +
Preference number: 4 (lower is better)
Translates to: GIPDIFNVLFACQLGHSCTCCPC*MFASTN
Trigger: GTTTGTGGAAGCGAACATCCAGCACGGGCAACAAGT...ACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATATCCGGGATGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp TTTCTTAGCGTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCCGGAGGAGGAAACGGTaGTCTATTAACAGCAAGTTC +
Preference number: 4 (lower is better)
Translates to: FLSVLLAFSHGEGIPDIFRRRKR*SINSKF
Trigger: GAACTTGCTGTTAATAGACCACCGTTTCCTCCTCCG...GAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGACGCTAAGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGACAGCTGGTACGTTTTaGCAACAATTTCTTGCTGCC +
Preference number: 4 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQTAGTF*QQFLAA
Trigger: GGCAGCAAGAAATTGTTGCCAAAACGTACCAGCTGT...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAAGTCCAGGAGCTGCATaGTTAAGCCAACGTCCAAAG +
Preference number: 4 (lower is better)
Translates to: VLFACQLGHSCHQHHGEQSPGAA*LSQRPK
Trigger: CTTTGGACGTTGGCTTAACCATGCAGCTCCTGGACT...TTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp CAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAGTTTCTGAACTGCAATaGCCCGGACATTCTCGTCTG +
Preference number: 4 (lower is better)
Translates to: QCPLCLSAGAFLSSASWRVSELQ*PGHSRL
Trigger: CAGACGAGAATGTCCGGGCCATTGCAGTTCAGAAAC...TCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp TTGAAATTGCATTCTTTGGGAAATGGAAGAATGAAACCCAGTCTACGGCGCCATTTTCTGGAGTCTTGCTaGTGCGCTGGCTGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: LKLHSLGNGRMKPSLRRHFLESC*CAGWWA
Trigger: TGCCCACCAGCCAGCGCATCAGCAAGACTCCAGAAA...ATGGCGCCGTAGACTGGGTTTCATTCTTCCATTTCCCAAAGAATGCAATTTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR TCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGTCTTGGCCATCTTGGTaGAGAAGCTCTGGAGGATGG +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKSWPSW*RSSGGW
Trigger: CCATCCTCCAGAGCTTCTTCACCAAGATGGCCAAGA...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTCCCACTGGAAATTTTTaGGGGGTGTTTCACCCACCA +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLPTGNF*GVFHPP
Trigger: TGGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGG...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAATTTCATCTCCGTTCTTaGGGCACTGCCTCACCCACT +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKFHLRS*GTASPT
Trigger: AGTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAA...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACACCCACAAAGACACTGTaGACACACTCTCGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTPTKTL*THSRGP
Trigger: AGGACCACGAGAGTGTGTTCACAGTGTCTTTGTGGG...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGACTTCCACAAACACAGTaGGGTCGGTGTTCCGAGGCA +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRLPQTQ*GRCSEA
Trigger: TGCCTCGGAACACCGACCTCACTGTGTTTGTGGAAG...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGAGCCTTGCTGGACAGTaGTGGGGTTTTGCAGCAGTA +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKSLAGQ*WGFAAV
Trigger: TACTGCTGCAAAACCCCATCACTGTCCAGCAAGGCT...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTAATTGCTTTCGAAGCTaGTTGGGCATTTCAGCCCGA +
Preference number: 4 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLNCFRS*LGISAR
Trigger: TCGGGCTGAAATGCCCAATCAGCTTCGAAAGCAATT...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp TATTTCTTAGCGTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATGGGAGATTGGAGTTCTaGAGGCTTTCAAGCTTTTGC +
Preference number: 4 (lower is better)
Translates to: YFLASSSLFPTVRASRIYGRLEF*RLSSFC
Trigger: GCAAAAGCTTGAAAGCCTTCAGAACTCCAATCTCCC...ATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGACGCTAAGAAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACACGCTTTTTCCCACGGTaGGGGCATCCCGGATATATT +
Preference number: 4 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTRFFPR*GHPGYI
Trigger: AATATATCCGGGATGCCCTCACCGTGGGAAAAAGCG...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CATCCCGGATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCATCTGTTCCACATTaGCATGGCCAGCCACATGCA +
Preference number: 4 (lower is better)
Translates to: HPGYIQCPLCLSAGAFLSSSVPH*HGQPHA
Trigger: TGCATGTGGCTGGCCATGGCAATGTGGAACAGATGA...TGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATATCCGGGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp ATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCCACTCTCGTGGTCCTTaGCATGGATGGTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: IYSMSSLLVSWGIPVISIHSRGP*HGWSAA
Trigger: AGCAGCTGACCATCCATGGCAAGGACCACGAGAGTG...GATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAAGGACTTGTTGCCCGTaGTGGATGTTCGCTTCCACA +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKRTCCP*WMFAST
Trigger: TGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCT...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGAGGACTTGTTGCCCGTaGTGGATGTTCGCTTCCACA +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKRTCCP*WMFAST
Trigger: TGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCT...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGAGGACTTGTTGCCCGTaGTGGATGTTCGCTTCCACA +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQRTCCP*WMFAST
Trigger: TGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCT...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGACCAGAGTACCTCTTCTaGGAAGGGCTTAGGGCTGGT +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRPEYLF*EGLRAG
Trigger: ACCAGCCCTAAGCCCTTCGCAGAAGAGGTACTCTGG...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAAAGAGAAGCTGGGCTTTaGCCTTGGACTCGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKREAGL*PWTRSL
Trigger: CAGGCTCCGAGTCCAAGGGCAAAGCCCAGCTTCTCT...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCACAGTCCATCCTTTGTCTCTGCAGACTTCGATCTGATCAAGGAAATATTTCTAGAGAAGCTGGGCTTTaGCCTTGGACTCGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: AQSILCLCRLRSDQGNISREAGL*PWTRSL
Trigger: CAGGCTCCGAGTCCAAGGGCAAAGCCCAGCTTCTCT...AGAAATATTTCCTTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGACTGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp AGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGATGATCAACAGGTTTCCTGCTCCTCTGCCTTaGCAGATATCTGCCACATGT +
Preference number: 4 (lower is better)
Translates to: SWGIPVISIMENKMINRFPAPLP*QISATC
Trigger: ACATGTGGCAGATATCTGGCAAGGCAGAGGAGCAGG...AAACCTGTTGATCATCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAATTGCAGTCCAGGAGCTaGATGGTTAAGCCAACGTCC +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKLQSRS*MVKPTS
Trigger: GGACGTTGGCTTAACCATGCAGCTCCTGGACTGCAA...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGACTTCATCTTTGAATaGCCCCGTGTTACCCACTGT +
Preference number: 4 (lower is better)
Translates to: VQLATSCFVQEKMTLAVIDFIFE*PRVTHC
Trigger: ACAGTGGGTAACACGGGGGCATTCAAAGATGAAGTC...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AAGCCTCCTTCCCCTGCATGTGTGTTAGATTCAGCCACAGTGCTTAGAAAACCAGGCCACACAGTAGCCTaGACAGGAGTAAACAAACCT +
Preference number: 4 (lower is better)
Translates to: KPPSPACVLDSATVLRKPGHTVA*TGVNKP
Trigger: AGGTTTGTTTACTCCTGTGCAGGCTACTGTGTGGCC...TGGTTTTCTAAGCACTGTGGCTGAATCTAACACACATGCAGGGGAAGGAGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAAGTCTTGCTGATGCGCTaGCTGGTGGGCAGTACGAAC +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKVLLMR*LVGSTN
Trigger: GTTCGTACTGCCCACCAGCCAGCGCATCAGCAAGAC...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp TATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGTTCCACATTGCCATaGCCAGCCACATGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: YIQCPLCLSAGAFLSSASCSTLP*PATCSS
Trigger: GCTGCTGCATGTGGCTGGCCATGGCAATGTGGAACA...TGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGACTCCGCAGCCACACTaGTCTCCAGTGCGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQTPQPH*SPVRAA
Trigger: GGCTGCGCGCACTGGAGACCAGTGTGGCTGCGGAGT...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAGAGGTGAGCTGCTTCTaGAAAGCCAAGGTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKEVSCF*KAKVSS
Trigger: TGAGGAGACCTTGGCTTTCCAGAAGCAGCTCACCTC...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAATGTCCTCTTTTTGGTGAAGAAGCTCTaGAGGATGGTACCAGGAGTA +
Preference number: 4 (lower is better)
Translates to: LLAFSHGEGIPDIFNVLFLVKKL*RMVPGV
Trigger: TACTCCTGGTACCATCCTCCAGAGCTTCTTCACCAA...AAAGAGGACATTGAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGTGAACACACTCTCGTaGTCCTTGCCATGGATGGTC +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKVNTLS*SLPWMV
Trigger: GACCATCCATGGCAAGGACCACGAGAGTGTGTTCAC...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTGCTGGGCTTTGCCCTTaGACTCGGAGCCTGGAGTCT +
Preference number: 4 (lower is better)
Translates to: EQRSLALNINQTISNANIAGLCP*TRSLES
Trigger: AGACTCCAGGCTCCGAGTCCAAGGGCAAAGCCCAGC...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTTGTGAGGGGGTTAAGTaGATCTGTGGCTATGATCGC +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLCEGVK*ICGYDR
Trigger: GCGATCATAGCCACAGATCCACTTAACCCCCTCACA...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CTGCACAGTCCATCCTTTGTCTCTGCAGACTTCGATCTGATCAAGGAAATATTTGCTTCAGCAGGAATCTaGCCAGCGCACTGTCGTGGT +
Preference number: 4 (lower is better)
Translates to: LHSPSFVSADFDLIKEIFASAGI*PAHCRG
Trigger: ACCACGACAGTGCGCTGGCCAGATTCCTGCTGAAGC...AAATATTTCCTTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGACTGTGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp GTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAATCTGCTGATAGTGTCTaGACTGTGCGATCTCACTTC +
Preference number: 4 (lower is better)
Translates to: VLFACQLGHSCHQHHGEQSADSV*TVRSHF
Trigger: GAAGTGAGATCGCACAGTCCAGACACTATCAGCAGA...TTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTAGCTCTCGGGGAGATTaGAGTTCTGAAGGCTTTCAA +
Preference number: 4 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLSSRGD*SSEGFQ
Trigger: TTGAAAGCCTTCAGAACTCCAATCTCCCCGAGAGCT...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CTTTCTGCATTTTTCAGAGCACCACCAAAACCAGTAGAGTCATATTGGACCAAGCATCTGCGGAGACCTTaGTGGTTTGGCTGGTGGTAC +
Preference number: 4 (lower is better)
Translates to: LSAFFRAPPKPVESYWTKHLRRP*WFGWWY
Trigger: GTACCACCAGCCAAACCATCAAGGTCTCCGCAGATG...CTTGGTCCAATATGACTCTACTGGTTTTGGTGGTGCTCTGAAAAATGCAGAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR TCA 90 bp TGTTTGATGCCAAGAACAAGATGTAGGAACCAGTTAAACTGCACAGTCCATCCTCATCTGCGGAGACCTTaGTGGTTTGGCTGGTGGTAC +
Preference number: 4 (lower is better)
Translates to: CLMPRTRCRNQLNCTVHPHLRRP*WFGWWY
Trigger: GTACCACCAGCCAAACCATCAAGGTCTCCGCAGATG...AGGATGGACTGTGCAGTTTAACTGGTTCCTACATCTTGTTCTTGGCATCAAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp TGTCATCAGCATCATGGAGAACAAGATGATCAACAGGTTTGTGTGATGGCGAAGTCTTGGCCATCTTGGTaGAGAAGCTCTGGAGGATGG +
Preference number: 4 (lower is better)
Translates to: CHQHHGEQDDQQVCVMAKSWPSW*RSSGGW
Trigger: CCATCCTCCAGAGCTTCTTCACCAAGATGGCCAAGA...CTTCGCCATCACACAAACCTGTTGATCATCTTGTTCTCCATGATGCTGATGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAACTTCCACAAACACAGTaGGGTCGGTGTTCCGAGGCA +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKLPQTQ*GRCSEA
Trigger: TGCCTCGGAACACCGACCTCACTGTGTTTGTGGAAG...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAGCCTTGCTGGACAGTaGTGGGGTTTTGCAGCAGTA +
Preference number: 4 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVSLAGQ*WGFAAV
Trigger: TACTGCTGCAAAACCCCATCACTGTCCAGCAAGGCT...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGTGGATCTGTGGCTATaGTCGCCTCCAATTGCTTTC +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKVDLWL*SPPIAF
Trigger: GAAAGCAATTGGAGGCGATCATAGCCACAGATCCAC...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAACGTCCAAAGCACTTTaGTCCCAGATCTCCCTTCTG +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKTSKAL*SQISLL
Trigger: CAGAAGGGAGATCTGGGATCAAAGTGCTTTGGACGT...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGACCGGACATTCTCGTCTaGAAAGTTGCAGTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRPDILV*KVAVQE
Trigger: CTCCTGGACTGCAACTTTTCAGACGAGAATGTCCGG...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAAGCTCTCCAGTTTCTaGACTGCAATGGCCCGGACA +
Preference number: 4 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVKLSSF*TAMART
Trigger: TGTCCGGGCCATTGCAGTTCAGAAACTGGAGAGCTT...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGTCAGGACTTCATCTTTaGATGCCCCCGTGTTACCCA +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQSGLHL*MPPCYP
Trigger: TGGGTAACACGGGGGCATTCAAAGATGAAGTCCTGA...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CCAGTTAAACTGCACAGTCCATCCTTTGTCTCTGCAGACTTCGATCTGATCAAGTCAGGACTTCATCTTTaGATGCCCCCGTGTTACCCA +
Preference number: 4 (lower is better)
Translates to: PVKLHSPSFVSADFDLIKSGLHL*MPPCYP
Trigger: TGGGTAACACGGGGGCATTCAAAGATGAAGTCCTGA...CTTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGTGTCCGAAGTCTATATaGAATAGGTTTCCTGTCTCT +
Preference number: 4 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQCPKSI*NRFPVS
Trigger: AGAGACAGGAAACCTATTTCATATAGACTTCGGACA...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGCACTCTCTCTTTATTaGTGCCCAGGAAACTCTTGT +
Preference number: 4 (lower is better)
Translates to: VQLATSCFVQEKMTLAVIALSLY*CPGNSC
Trigger: ACAAGAGTTTCCTGGGCATCAATAAAGAGAGAGTGC...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTGCACTCTCTCTTTATTaGTGCCCAGGAAACTCTTGT +
Preference number: 4 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLALSLY*CPGNSC
Trigger: ACAAGAGTTTCCTGGGCATCAATAAAGAGAGAGTGC...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGTCATCTGTTCCACATTaGCATGGCCAGCCACATGCA +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKSSVPH*HGQPHA
Trigger: TGCATGTGGCTGGCCATGGCAATGTGGAACAGATGA...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGCACACTGGTCTCCAGTaGGCGCAGCCACACCTGAGC +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQHTGLQ*AQPHLS
Trigger: GCTCAGGTGTGGCTGCGCGCACTGGAGACCAGTGTG...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTTGGCAGAGGACTTGTTaGCCGTGCTGGATGTTCGCT +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELWQRTC*PCWMFA
Trigger: AGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCA...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CTTTCTGCATTTTTCAGAGCACCACCAAAACCAGTAGAGTCATATTGGACCAAGCCAGAGTACCTCTTCTaGGAAGGGCTTAGGGCTGGT +
Preference number: 4 (lower is better)
Translates to: LSAFFRAPPKPVESYWTKPEYLF*EGLRAG
Trigger: ACCAGCCCTAAGCCCTTCGCAGAAGAGGTACTCTGG...CTTGGTCCAATATGACTCTACTGGTTTTGGTGGTGCTCTGAAAAATGCAGAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR GCA 90 bp TCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAATGTCCTCTTTGACAGTGATGGGGTTTTaGAGCAGTAGATCTGTAGGT +
Preference number: 4 (lower is better)
Translates to: SSLFPTVRASRIYSMSSLTVMGF*SSRSVG
Trigger: ACCTACAGATCTACTGCTGCAAAACCCCATCACTGT...CAAAGAGGACATTGAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTGCAACAATTTCTTGCTaGCCCCATTTCACTGAGCTG +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLATISC*PHFTEL
Trigger: CAGCTCAGTGAAATGGGGGCAGCAAGAAATTGTTGC...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp ATTACATTCATAGAGAGAAGCACAGTTTCAGCACAGGGCATGGCCTGTACAGGATCTCGTCTGAAAAGTTaGAGTCCAGGAGCTGCATGG +
Preference number: 4 (lower is better)
Translates to: ITFIERSTVSAQGMACTGSRLKS*SPGAAW
Trigger: CCATGCAGCTCCTGGACTGCAACTTTTCAGACGAGA...TCCTGTACAGGCCATGCCCTGTGCTGAAACTGTGCTTCTCTCTATGAATGTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR GCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAATCTCGTCTGAAAAGTTaGAGTCCAGGAGCTGCATGG +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKSRLKS*SPGAAW
Trigger: CCATGCAGCTCCTGGACTGCAACTTTTCAGACGAGA...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGCTCCAGTTTCTGAACTaGAATGGCCCGGACATTCTC +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQLQFLN*NGPDIL
Trigger: GAGAATGTCCGGGCCATTGCAGTTCAGAAACTGGAG...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGATGATCAAATAGTGTCTGGACTGTaGGATCTCACTTCGCAGGAA +
Preference number: 4 (lower is better)
Translates to: ACQLGHSCHQHHGEQDDQIVSGL*DLTSQE
Trigger: TTCCTGCGAAGTGAGATCGCACAGTCCAGACACTAT...TTGATCATCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTATGCTGTGTGAAGTCCTaGAACATGGCTGTGCCACAG +
Preference number: 4 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVCCVKS*NMAVPQ
Trigger: CTGTGGCACAGCCATGTTGCAGGACTTCACACAGCA...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAAATATTTCTTAGCGTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATGACGTCATACTTCTCTaGCGAGAGCGATTTAATATC +
Preference number: 4 (lower is better)
Translates to: EIFLSVLLAFSHGEGIPDDVILL*RERFNI
Trigger: GATATTAAATCGCTCTCGGCAGAGAAGTATGACGTC...ATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGACGCTAAGAAATATTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAATGTCACCAGTTGAGATaGAACCGTAAGGCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKCHQLR*NRKAEG
Trigger: GCCTTCTGCCTTACGGTTGCATCTCAACTGGTGACA...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGTGTCACCAGTTGAGATaGAACCGTAAGGCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKCHQLR*NRKAEG
Trigger: GCCTTCTGCCTTACGGTTGCATCTCAACTGGTGACA...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTCCGTGTTACCCACTGTaGTTTGCTGAATTTGAGCGA +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLPCYPL*FAEFER
Trigger: TCGCTCAAATTCAGCAAAGCACAGTGGGTAACACGG...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGATCCGTGTTACCCACTGTaGTTTGCTGAATTTGAGCGA +
Preference number: 4 (lower is better)
Translates to: LFACQLGHSCHQHHGEQDPCYPL*FAEFER
Trigger: TCGCTCAAATTCAGCAAAGCACAGTGGGTAACACGG...ATCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp AAGCCTCCTTCCCCTGCATGTGTGTTAGATTCAGCCACAGTGCTTAGAAAACCAGACTTCATCTTTGAATaGCCCCGTGTTACCCACTGT +
Preference number: 4 (lower is better)
Translates to: KPPSPACVLDSATVLRKPDFIFE*PRVTHC
Trigger: ACAGTGGGTAACACGGGGGCATTCAAAGATGAAGTC...TGGTTTTCTAAGCACTGTGGCTGAATCTAACACACATGCAGGGGAAGGAGGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR GCA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAGGCCACACAGTAGCCTaGACAGGAGTAAACAAACCT +
Preference number: 4 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTGHTVA*TGVNKP
Trigger: AGGTTTGTTTACTCCTGTGCAGGCTACTGTGTGGCC...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp TTGAAATTGCATTCTTTGGGAAATGGAAGAATGAAACCCAGTCTACGGCGCCATTGTTCCACATTGCCATaGCCAGCCACATGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: LKLHSLGNGRMKPSLRRHCSTLP*PATCSS
Trigger: GCTGCTGCATGTGGCTGGCCATGGCAATGTGGAACA...ATGGCGCCGTAGACTGGGTTTCATTCTTCCATTTCCCAAAGAATGCAATTTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CCA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAGAGGTGAGCTGCTTCTaGAAAGCCAAGGTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVEVSCF*KAKVSS
Trigger: TGAGGAGACCTTGGCTTTCCAGAAGCAGCTCACCTC...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATACACCTCATCAAGGGCTaGGTCTGGAGGCGTGTCGAG +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIHLIKG*VWRRVE
Trigger: CTCGACACGCCTCCAGACCCAGCCCTTGATGAGGTG...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTGGGCTGGTTCTCCTTTaGCAGAGGACTTGTTGCCCG +
Preference number: 4 (lower is better)
Translates to: EQRSLALNINQTISNANIGLVLL*QRTCCP
Trigger: CGGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCC...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAGCTGGGCTTTGCCCTTaGACTCGGAGCCTGGAGTCT +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIAGLCP*TRSLES
Trigger: AGACTCCAGGCTCCGAGTCCAAGGGCAAAGCCCAGC...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGTGTGAGGGGGTTAAGTaGATCTGTGGCTATGATCGC +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKCEGVK*ICGYDR
Trigger: GCGATCATAGCCACAGATCCACTTAACCCCCTCACA...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGATGTAGGAACCAGTTAAACTGCACAGTCCATCCTTTGTCTCTGCAGACTTCGTGTGAGGGGGTTAAGTaGATCTGTGGCTATGATCGC +
Preference number: 4 (lower is better)
Translates to: RCRNQLNCTVHPLSLQTSCEGVK*ICGYDR
Trigger: GCGATCATAGCCACAGATCCACTTAACCCCCTCACA...CGAAGTCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTGGTTCCTACATCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGAGTCCAGGAGCTGCATaGTTAAGCCAACGTCCAAAG +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQSPGAA*LSQRPK
Trigger: CTTTGGACGTTGGCTTAACCATGCAGCTCCTGGACT...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTTCTGCTGATAGTGTCTaGACTGTGCGATCTCACTTC +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLSADSV*TVRSHF
Trigger: GAAGTGAGATCGCACAGTCCAGACACTATCAGCAGA...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTACAGGGGCTTCTTCTTaGAGGCCATCACTTTGCATT +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLTGASS*RPSLCI
Trigger: AATGCAAAGTGATGGCCTCCAAGAAGAAGCCCCTGT...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp ATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCCCCACTGGAAATTTTTaGGGGGTGTTTCACCCACCA +
Preference number: 4 (lower is better)
Translates to: IYSMSSLLVSWGIPVISIPTGNF*GVFHPP
Trigger: TGGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGG...GATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTCCCACAAAGACACTGTaGACACACTCTCGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELPTKTL*THSRGP
Trigger: AGGACCACGAGAGTGTGTTCACAGTGTCTTTGTGGG...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CTTTCTGCATTTTTCAGAGCACCACCAAAACCAGTAGAGTCATATTGGACCAAGAGCCTTGCTGGACAGTaGTGGGGTTTTGCAGCAGTA +
Preference number: 4 (lower is better)
Translates to: LSAFFRAPPKPVESYWTKSLAGQ*WGFAAV
Trigger: TACTGCTGCAAAACCCCATCACTGTCCAGCAAGGCT...CTTGGTCCAATATGACTCTACTGGTTTTGGTGGTGCTCTGAAAAATGCAGAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR TCA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAATTGCTTTCGAAGCTaGTTGGGCATTTCAGCCCGA +
Preference number: 4 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTNCFRS*LGISAR
Trigger: TCGGGCTGAAATGCCCAATCAGCTTCGAAAGCAATT...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACACCCAAATGGACTCCATaGTGCGTAGAATCTGCAAGA +
Preference number: 4 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTPKWTP*CVESAR
Trigger: TCTTGCAGATTCTACGCATCATGGAGTCCATTTGGG...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGCCCAAATGGACTCCATaGTGCGTAGAATCTGCAAGA +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQPKWTP*CVESAR
Trigger: TCTTGCAGATTCTACGCATCATGGAGTCCATTTGGG...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTATCAGGACTTCATCTTTaGATGCCCCCGTGTTACCCA +
Preference number: 4 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVSGLHL*MPPCYP
Trigger: TGGGTAACACGGGGGCATTCAAAGATGAAGTCCTGA...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTCGCTTTTTCCCACGGTaGGGGCATCCCGGATATATT +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELRFFPR*GHPGYI
Trigger: AATATATCCGGGATGCCCTCACCGTGGGAAAAAGCG...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGAGACAGGCTGCCTGCTaGGCTGCGTGGCTTCATCCT +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQRQAAC*AAWLHP
Trigger: AGGATGAAGCCACGCAGCGCAGCAGGCAGCCTGTCT...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GATTCAGCCACAGTGCTTAGAAAACCATACCCAGGCTCATTCACACTAATGAAAAGGCAGTCTAGGGTCTaGACCACTTGGTACCTGTCA +
Preference number: 4 (lower is better)
Translates to: DSATVLRKPYPGSFTLMKRQSRV*TTWYLS
Trigger: TGACAGGTACCAAGTGGTGCAGACCCTAGACTGCCT...TTTCATTAGTGTGAATGAGCCTGGGTATGGTTTTCTAAGCACTGTGGCTGAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR GCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAAAGGACTTGTTGCCCGTaGTGGATGTTCGCTTCCACA +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKRTCCP*WMFAST
Trigger: TGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCT...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTACAGTGATGGGGTTTTaGAGCAGTAGATCTGTAGGT +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLTVMGF*SSRSVG
Trigger: ACCTACAGATCTACTGCTGCAAAACCCCATCACTGT...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAGCTGCCCTGCTCCTCTaGCTTGCCAGATATCTGCCA +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIAALLL*LARYLP
Trigger: TGGCAGATATCTGGCAAGGCAGAGGAGCAGGGCAGC...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGCTTTCATATCGAAAATaGCAGAGCAATTCTTTGTCC +
Preference number: 4 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQLSYRK*QSNSLS
Trigger: GGACAAAGAATTGCTCTGGCATTTTCGATATGAAAG...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CATCCCGGATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATTGGCAACAATTTCTTaGTGCCCCCATTTCACTGAG +
Preference number: 4 (lower is better)
Translates to: HPGYIQCPLCLSAGAFLSLATIS*CPHFTE
Trigger: CTCAGTGAAATGGGGGCAGCAAGAAATTGTTGCCAA...TGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATATCCGGGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp TGTTTGATGCCAAGAACAAGATGTAGGAACCAGTTAAACTGCACAGTCCATCCTTGCTGTGTGAAGTCCTaGAACATGGCTGTGCCACAG +
Preference number: 4 (lower is better)
Translates to: CLMPRTRCRNQLNCTVHPCCVKS*NMAVPQ
Trigger: CTGTGGCACAGCCATGTTGCAGGACTTCACACAGCA...AGGATGGACTGTGCAGTTTAACTGGTTCCTACATCTTGTTCTTGGCATCAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGACGTCATACTTCTCTaGCGAGAGCGATTTAATATC +
Preference number: 4 (lower is better)
Translates to: VQLATSCFVQEKMTLAVIDVILL*RERFNI
Trigger: GATATTAAATCGCTCTCGGCAGAGAAGTATGACGTC...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTATGTCACCAGTTGAGATaGAACCGTAAGGCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVCHQLR*NRKAEG
Trigger: GCCTTCTGCCTTACGGTTGCATCTCAACTGGTGACA...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACACCGTGTTACCCACTGTaGTTTGCTGAATTTGAGCGA +
Preference number: 4 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTPCYPL*FAEFER
Trigger: TCGCTCAAATTCAGCAAAGCACAGTGGGTAACACGG...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp ATCCCGGATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATGACTTCATCTTTGAATaGCCCCGTGTTACCCACTGT +
Preference number: 4 (lower is better)
Translates to: IPDIFNVLFACQLGHSCHDFIFE*PRVTHC
Trigger: ACAGTGGGTAACACGGGGGCATTCAAAGATGAAGTC...ATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATATCCGGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTTGTACCACGTGGATCTaGCCAGGGCTCTTGTGCATC +
Preference number: 4 (lower is better)
Translates to: EQRSLALNINQTISNANICTTWI*PGLLCI
Trigger: GATGCACAAGAGCCCTGGCCAGATCCACGTGGTACA...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CTTTCTGCATTTTTCAGAGCACCACCAAAACCAGTAGAGTCATATTGGACCAAGGAGGTGAGCTGCTTCTaGAAAGCCAAGGTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: LSAFFRAPPKPVESYWTKEVSCF*KAKVSS
Trigger: TGAGGAGACCTTGGCTTTCCAGAAGCAGCTCACCTC...CTTGGTCCAATATGACTCTACTGGTTTTGGTGGTGCTCTGAAAAATGCAGAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CCA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTCTGGTGGTACCGCGGTaGATGACGATGAAGATGCAG +
Preference number: 4 (lower is better)
Translates to: EQRSLALNINQTISNANILVVPR*MTMKMQ
Trigger: CTGCATCTTCATCGTCATCCACCGCGGTACCACCAG...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp ATTACATTCATAGAGAGAAGCACAGTTTCAGCACAGGGCATGGCCTGTACAGGATTGGTGAAGAAGCTCTaGAGGATGGTACCAGGAGTA +
Preference number: 4 (lower is better)
Translates to: ITFIERSTVSAQGMACTGLVKKL*RMVPGV
Trigger: TACTCCTGGTACCATCCTCCAGAGCTTCTTCACCAA...TCCTGTACAGGCCATGCCCTGTGCTGAAACTGTGCTTCTCTCTATGAATGTAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CCA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACACACTGCCTCACCCACTaGAAATTTTTGAGGGGTGTT +
Preference number: 4 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTHCLTH*KFLRGV
Trigger: AACACCCCTCAAAAATTTCCAGTGGGTGAGGCAGTG...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGCACTGCCTCACCCACTaGAAATTTTTGAGGGGTGTT +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQHCLTH*KFLRGV
Trigger: AACACCCCTCAAAAATTTCCAGTGGGTGAGGCAGTG...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGCACCTCATCAAGGGCTaGGTCTGGAGGCGTGTCGAG +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQHLIKG*VWRRVE
Trigger: CTCGACACGCCTCCAGACCCAGCCCTTGATGAGGTG...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAACGGAGGAGGAAACGGTaGTCTATTAACAGCAAGTTC +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKRRRKR*SINSKF
Trigger: GAACTTGCTGTTAATAGACCACCGTTTCCTCCTCCG...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAGTCCAGGAGCTGCATaGTTAAGCCAACGTCCAAAG +
Preference number: 4 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVSPGAA*LSQRPK
Trigger: CTTTGGACGTTGGCTTAACCATGCAGCTCCTGGACT...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAGTTTCTGAACTGCAATaGCCCGGACATTCTCGTCTG +
Preference number: 4 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVVSELQ*PGHSRL
Trigger: CAGACGAGAATGTCCGGGCCATTGCAGTTCAGAAAC...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGTTTCTGAACTGCAATaGCCCGGACATTCTCGTCTG +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRVSELQ*PGHSRL
Trigger: CAGACGAGAATGTCCGGGCCATTGCAGTTCAGAAAC...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAGCTTCAGCAGGAATCTaGCCAGCGCACTGTCGTGGT +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIASAGI*PAHCRG
Trigger: ACCACGACAGTGCGCTGGCCAGATTCCTGCTGAAGC...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAATCTGCTGATAGTGTCTaGACTGTGCGATCTCACTTC +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKSADSV*TVRSHF
Trigger: GAAGTGAGATCGCACAGTCCAGACACTATCAGCAGA...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGCTCTCGGGGAGATTaGAGTTCTGAAGGCTTTCAA +
Preference number: 4 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTSSRGD*SSEGFQ
Trigger: TTGAAAGCCTTCAGAACTCCAATCTCCCCGAGAGCT...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGAGCTCTCGGGGAGATTaGAGTTCTGAAGGCTTTCAA +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQSSRGD*SSEGFQ
Trigger: TTGAAAGCCTTCAGAACTCCAATCTCCCCGAGAGCT...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp ATCCCGGATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATACAGGGGCTTCTTCTTaGAGGCCATCACTTTGCATT +
Preference number: 4 (lower is better)
Translates to: IPDIFNVLFACQLGHSCHTGASS*RPSLCI
Trigger: AATGCAAAGTGATGGCCTCCAAGAAGAAGCCCCTGT...ATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATATCCGGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGACAGGGGCTTCTTCTTaGAGGCCATCACTTTGCATT +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKTGASS*RPSLCI
Trigger: AATGCAAAGTGATGGCCTCCAAGAAGAAGCCCCTGT...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGGCGCGCAGCCACACCTaGGCTTTCATCTGTTCCACA +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQARSHT*AFICST
Trigger: TGTGGAACAGATGAAAGCTCAGGTGTGGCTGCGCGC...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAACCCACTGGAAATTTTTaGGGGGTGTTTCACCCACCA +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKPTGNF*GVFHPP
Trigger: TGGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGG...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATACTTCCACAAACACAGTaGGGTCGGTGTTCCGAGGCA +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEILPQTQ*GRCSEA
Trigger: TGCCTCGGAACACCGACCTCACTGTGTTTGTGGAAG...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp TATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCAAATTGCTTTCGAAGCTaGTTGGGCATTTCAGCCCGA +
Preference number: 4 (lower is better)
Translates to: YIQCPLCLSAGAFLSSASNCFRS*LGISAR
Trigger: TCGGGCTGAAATGCCCAATCAGCTTCGAAAGCAATT...TGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp GATTCAGCCACAGTGCTTAGAAAACCATACCCAGGCTCATTCACACTAATGAAAGTGGATCTGTGGCTATaGTCGCCTCCAATTGCTTTC +
Preference number: 4 (lower is better)
Translates to: DSATVLRKPYPGSFTLMKVDLWL*SPPIAF
Trigger: GAAAGCAATTGGAGGCGATCATAGCCACAGATCCAC...TTTCATTAGTGTGAATGAGCCTGGGTATGGTTTTCTAAGCACTGTGGCTGAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR TCA 90 bp TGTTTGATGCCAAGAACAAGATGTAGGAACCAGTTAAACTGCACAGTCCATCCTGTGGATCTGTGGCTATaGTCGCCTCCAATTGCTTTC +
Preference number: 4 (lower is better)
Translates to: CLMPRTRCRNQLNCTVHPVDLWL*SPPIAF
Trigger: GAAAGCAATTGGAGGCGATCATAGCCACAGATCCAC...AGGATGGACTGTGCAGTTTAACTGGTTCCTACATCTTGTTCTTGGCATCAAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTCCGGACATTCTCGTCTaGAAAGTTGCAGTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: EQRSLALNINQTISNANIPDILV*KVAVQE
Trigger: CTCCTGGACTGCAACTTTTCAGACGAGAATGTCCGG...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp ATTCAAATGAAAGGCAGAGTCTGTGTATGGTTCTTTAGAAGCCTAAGCTTGCGTAAGCTCTCCAGTTTCTaGACTGCAATGGCCCGGACA +
Preference number: 4 (lower is better)
Translates to: IQMKGRVCVWFFRSLSLRKLSSF*TAMART
Trigger: TGTCCGGGCCATTGCAGTTCAGAAACTGGAGAGCTT...ACGCAAGCTTAGGCTTCTAAAGAACCATACACAGACTCTGCCTTTCATTTGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR TCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGACCCAAATGGACTCCATaGTGCGTAGAATCTGCAAGA +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRPKWTP*CVESAR
Trigger: TCTTGCAGATTCTACGCATCATGGAGTCCATTTGGG...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGTATTTTGTCACCAGTTaGGATGCAACCGTAAGGCAG +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQYFVTS*DATVRQ
Trigger: CTGCCTTACGGTTGCATCTCAACTGGTGACAAAATA...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAATATTTTGTCACCAGTTaGGATGCAACCGTAAGGCAG +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKYFVTS*DATVRQ
Trigger: CTGCCTTACGGTTGCATCTCAACTGGTGACAAAATA...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGATGTCCGAAGTCTATATaGAATAGGTTTCCTGTCTCT +
Preference number: 4 (lower is better)
Translates to: PLCLSAGAFLSSASWRTRCPKSI*NRFPVS
Trigger: AGAGACAGGAAACCTATTTCATATAGACTTCGGACA...TCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp TGCTTTTCTCCTTGTTTGATGCCAAGAACAAGATGTAGGAACCAGTTAAACTGCAGGCAGTCTAGGGTCTaGACCACTTGGTACCTGTCA +
Preference number: 4 (lower is better)
Translates to: CFSPCLMPRTRCRNQLNCRQSRV*TTWYLS
Trigger: TGACAGGTACCAAGTGGTGCAGACCCTAGACTGCCT...GCAGTTTAACTGGTTCCTACATCTTGTTCTTGGCATCAAACAAGGAGAAAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGTCTAGCTCATCATCGTaGACATTGCTGATGTCAGTG +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQSSSSS*TLLMSV
Trigger: CACTGACATCAGCAATGTGCACGATGATGAGCTAGA...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGTCTAGCTCATCATCGTaGACATTGCTGATGTCAGTG +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKSSSSS*TLLMSV
Trigger: CACTGACATCAGCAATGTGCACGATGATGAGCTAGA...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATATGGCAGAGGACTTGTTaGCCGTGCTGGATGTTCGCT +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIWQRTC*PCWMFA
Trigger: AGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCA...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATACCAGAGTACCTCTTCTaGGAAGGGCTTAGGGCTGGT +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIPEYLF*EGLRAG
Trigger: ACCAGCCCTAAGCCCTTCGCAGAAGAGGTACTCTGG...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAACAGTGATGGGGTTTTaGAGCAGTAGATCTGTAGGT +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKTVMGF*SSRSVG
Trigger: ACCTACAGATCTACTGCTGCAAAACCCCATCACTGT...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTCCTGCTCCTCTGCCTTaGCAGATATCTGCCACATGT +
Preference number: 4 (lower is better)
Translates to: EQRSLALNINQTISNANIPAPLP*QISATC
Trigger: ACATGTGGCAGATATCTGGCAAGGCAGAGGAGCAGG...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTCTTGTCAGGATTGGTTaGGGATGTGAGCTTGTCAGC +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELLVRIG*GCELVS
Trigger: GCTGACAAGCTCACATCCGCAACCAATCCTGACAAG...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCTCAGGGGTGGGCCGGTaGTTAGGCAAAGCTATGGGG +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVSGVGR*LGKAMG
Trigger: CCCCATAGCTTTGCCTAAGCACCGGCCCACCCCTGA...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp ACAAGATGTAGGAACCAGTTAAACTGCACAGTCCATCCTTTGTCTCTGCAGACTCAATTCTTTGTCCTCTaGTGTGAGGGGGTTAAGTGG +
Preference number: 4 (lower is better)
Translates to: TRCRNQLNCTVHPLSLQTQFFVL*CEGVKW
Trigger: CCACTTAACCCCCTCACAGCAGAGGACAAAGAATTG...AGTCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTGGTTCCTACATCTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp TGTCATCAGCATCATGGAGAACAAGATGATCAACAGGTTTGTGTGATGGCGAAGGCAACAATTTCTTGCTaGCCCCATTTCACTGAGCTG +
Preference number: 4 (lower is better)
Translates to: CHQHHGEQDDQQVCVMAKATISC*PHFTEL
Trigger: CAGCTCAGTGAAATGGGGGCAGCAAGAAATTGTTGC...CTTCGCCATCACACAAACCTGTTGATCATCTTGTTCTCCATGATGCTGATGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTTTGCAGTCCAGGAGCTaGATGGTTAAGCCAACGTCC +
Preference number: 4 (lower is better)
Translates to: EQRSLALNINQTISNANILQSRS*MVKPTS
Trigger: GGACGTTGGCTTAACCATGCAGCTCCTGGACTGCAA...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTTCTCGTCTGAAAAGTTaGAGTCCAGGAGCTGCATGG +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELSRLKS*SPGAAW
Trigger: CCATGCAGCTCCTGGACTGCAACTTTTCAGACGAGA...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAACTCCAGTTTCTGAACTaGAATGGCCCGGACATTCTC +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKLQFLN*NGPDIL
Trigger: GAGAATGTCCGGGCCATTGCAGTTCAGAAACTGGAG...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp ATTCAAATGAAAGGCAGAGTCTGTGTATGGTTCTTTAGAAGCCTAAGCTTGCGTTGCTGTGTGAAGTCCTaGAACATGGCTGTGCCACAG +
Preference number: 4 (lower is better)
Translates to: IQMKGRVCVWFFRSLSLRCCVKS*NMAVPQ
Trigger: CTGTGGCACAGCCATGTTGCAGGACTTCACACAGCA...ACGCAAGCTTAGGCTTCTAAAGAACCATACACAGACTCTGCCTTTCATTTGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR GCA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTACCGTGTTACCCACTGTaGTTTGCTGAATTTGAGCGA +
Preference number: 4 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVPCYPL*FAEFER
Trigger: TCGCTCAAATTCAGCAAAGCACAGTGGGTAACACGG...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGATTCAATGTCCTCTTTaGTTGTCAGCTGGGGCATTC +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQIQCPL*LSAGAF
Trigger: GAATGCCCCAGCTGACAAGCAAAGAGGACATTGAAT...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAATTCAATGTCCTCTTTaGTTGTCAGCTGGGGCATTC +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKIQCPL*LSAGAF
Trigger: GAATGCCCCAGCTGACAAGCAAAGAGGACATTGAAT...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGATTCAATGTCCTCTTTaGTTGTCAGCTGGGGCATTC +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKIQCPL*LSAGAF
Trigger: GAATGCCCCAGCTGACAAGCAAAGAGGACATTGAAT...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATATGTTCCACATTGCCATaGCCAGCCACATGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEICSTLP*PATCSS
Trigger: GCTGCTGCATGTGGCTGGCCATGGCAATGTGGAACA...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTGTGAACACACTCTCGTaGTCCTTGCCATGGATGGTC +
Preference number: 4 (lower is better)
Translates to: EQRSLALNINQTISNANIVNTLS*SLPWMV
Trigger: GACCATCCATGGCAAGGACCACGAGAGTGTGTTCAC...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GATTCAGCCACAGTGCTTAGAAAACCATACCCAGGCTCATTCACACTAATGAAAACTTGTTGCCCGTGCTaGATGTTCGCTTCCACAAAC +
Preference number: 4 (lower is better)
Translates to: DSATVLRKPYPGSFTLMKTCCPC*MFASTN
Trigger: GTTTGTGGAAGCGAACATCCAGCACGGGCAACAAGT...TTTCATTAGTGTGAATGAGCCTGGGTATGGTTTTCTAAGCACTGTGGCTGAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGGGGCTGGTTCTCCTTTaGCAGAGGACTTGTTGCCCG +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQGLVLL*QRTCCP
Trigger: CGGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCC...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCGCTGGGCTTTGCCCTTaGACTCGGAGCCTGGAGTCT +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVAGLCP*TRSLES
Trigger: AGACTCCAGGCTCCGAGTCCAAGGGCAAAGCCCAGC...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGACGGAGGAGGAAACGGTaGTCTATTAACAGCAAGTTC +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRRRRKR*SINSKF
Trigger: GAACTTGCTGTTAATAGACCACCGTTTCCTCCTCCG...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAACAGCTGGTACGTTTTaGCAACAATTTCTTGCTGCC +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKTAGTF*QQFLAA
Trigger: GGCAGCAAGAAATTGTTGCCAAAACGTACCAGCTGT...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAACAGCTGGTACGTTTTaGCAACAATTTCTTGCTGCC +
Preference number: 4 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTTAGTF*QQFLAA
Trigger: GGCAGCAAGAAATTGTTGCCAAAACGTACCAGCTGT...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGTCCAGGAGCTGCATaGTTAAGCCAACGTCCAAAG +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELSPGAA*LSQRPK
Trigger: CTTTGGACGTTGGCTTAACCATGCAGCTCCTGGACT...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGGCTTCAGCAGGAATCTaGCCAGCGCACTGTCGTGGT +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQASAGI*PAHCRG
Trigger: ACCACGACAGTGCGCTGGCCAGATTCCTGCTGAAGC...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGATCTGCTGATAGTGTCTaGACTGTGCGATCTCACTTC +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRSADSV*TVRSHF
Trigger: GAAGTGAGATCGCACAGTCCAGACACTATCAGCAGA...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CCAAATAAGCCTCCTTCCCCTGCATGTGTGTTAGATTCAGCCACAGTGCTTAGACTAACACAGACATCCTaGAATTTCTGGAAGTGTGGA +
Preference number: 4 (lower is better)
Translates to: PNKPPSPACVLDSATVLRLTQTS*NFWKCG
Trigger: TCCACACTTCCAGAAATTCCAGGATGTCTGTGTTAG...TCTAAGCACTGTGGCTGAATCTAACACACATGCAGGGGAAGGAGGCTTATTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTTCTTTGCTTGTCAGCTaGGGCATTCCTGTCATCAGC +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELSLLVS*GIPVIS
Trigger: GCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGA...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATATCTTGGCCATCTTGGTaGAGAAGCTCTGGAGGATGG +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEISWPSW*RSSGGW
Trigger: CCATCCTCCAGAGCTTCTTCACCAAGATGGCCAAGA...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAAGCCTTGCTGGACAGTaGTGGGGTTTTGCAGCAGTA +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEISLAGQ*WGFAAV
Trigger: TACTGCTGCAAAACCCCATCACTGTCCAGCAAGGCT...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAAAATTGCTTTCGAAGCTaGTTGGGCATTTCAGCCCGA +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKNCFRS*LGISAR
Trigger: TCGGGCTGAAATGCCCAATCAGCTTCGAAAGCAATT...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAATTGCTTTCGAAGCTaGTTGGGCATTTCAGCCCGA +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELNCFRS*LGISAR
Trigger: TCGGGCTGAAATGCCCAATCAGCTTCGAAAGCAATT...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp ATTCAAATGAAAGGCAGAGTCTGTGTATGGTTCTTTAGAAGCCTAAGCTTGCGTACGTCCAAAGCACTTTaGTCCCAGATCTCCCTTCTG +
Preference number: 4 (lower is better)
Translates to: IQMKGRVCVWFFRSLSLRTSKAL*SQISLL
Trigger: CAGAAGGGAGATCTGGGATCAAAGTGCTTTGGACGT...ACGCAAGCTTAGGCTTCTAAAGAACCATACACAGACTCTGCCTTTCATTTGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR TCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAAAGCTCTCCAGTTTCTaGACTGCAATGGCCCGGACA +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIKLSSF*TAMART
Trigger: TGTCCGGGCCATTGCAGTTCAGAAACTGGAGAGCTT...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp ATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGCTTTTGCTTAAGCTGTaGAATAACTTGGGAACTGAC +
Preference number: 4 (lower is better)
Translates to: IQCPLCLSAGAFLSSASWLLLKL*NNLGTD
Trigger: GTCAGTTCCCAAGTTATTTCACAGCTTAAGCAAAAG...CCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAAGGGAGATTGGAGTTCTaGAGGCTTTCAAGCTTTTGC +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKGRLEF*RLSSFC
Trigger: GCAAAAGCTTGAAAGCCTTCAGAACTCCAATCTCCC...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GCACAGTCCATCCTTTGTCTCTGCAGACTTCGATCTGATCAAGGAAATATTTCTCCCAAATGGACTCCATaGTGCGTAGAATCTGCAAGA +
Preference number: 4 (lower is better)
Translates to: AQSILCLCRLRSDQGNISPKWTP*CVESAR
Trigger: TCTTGCAGATTCTACGCATCATGGAGTCCATTTGGG...AGAAATATTTCCTTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGACTGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp AGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGATGATCAACAGGTTTTTTTCCTTGAGCCAGTaGTTCAGGACTTCATCTTTG +
Preference number: 4 (lower is better)
Translates to: SWGIPVISIMENKMINRFFSLSQ*FRTSSL
Trigger: CAAAGATGAAGTCCTGAATCACTGGCTCAAGGAAAA...AAACCTGTTGATCATCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCT
44% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAATTTTCCTTGAGCCAGTaGTTCAGGACTTCATCTTTG +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKFSLSQ*FRTSSL
Trigger: CAAAGATGAAGTCCTGAATCACTGGCTCAAGGAAAA...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCACTCTCTCTTTATTaGTGCCCAGGAAACTCTTGT +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRALSLY*CPGNSC
Trigger: ACAAGAGTTTCCTGGGCATCAATAAAGAGAGAGTGC...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAGCACTCTCTCTTTATTaGTGCCCAGGAAACTCTTGT +
Preference number: 4 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVALSLY*CPGNSC
Trigger: ACAAGAGTTTCCTGGGCATCAATAAAGAGAGAGTGC...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAACAATTCTTTGTCCTCTaGTGTGAGGGGGTTAAGTGG +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKQFFVL*CEGVKW
Trigger: CCACTTAACCCCCTCACAGCAGAGGACAAAGAATTG...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTCAATTCTTTGTCCTCTaGTGTGAGGGGGTTAAGTGG +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELQFFVL*CEGVKW
Trigger: CCACTTAACCCCCTCACAGCAGAGGACAAAGAATTG...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AAATATTTCTTAGCGTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATACTTTCATATCGAAAATaGCAGAGCAATTCTTTGTCC +
Preference number: 4 (lower is better)
Translates to: KYFLASSSLFPTVRASRILSYRK*QSNSLS
Trigger: GGACAAAGAATTGCTCTGGCATTTTCGATATGAAAG...TATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGACGCTAAGAAATATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTGCAACAATTTCTTGCTaGCCCCATTTCACTGAGCTG +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELATISC*PHFTEL
Trigger: CAGCTCAGTGAAATGGGGGCAGCAAGAAATTGTTGC...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TGCTTTTCTCCTTGTTTGATGCCAAGAACAAGATGTAGGAACCAGTTAAACTGCTCTCGTCTGAAAAGTTaGAGTCCAGGAGCTGCATGG +
Preference number: 4 (lower is better)
Translates to: CFSPCLMPRTRCRNQLNCSRLKS*SPGAAW
Trigger: CCATGCAGCTCCTGGACTGCAACTTTTCAGACGAGA...GCAGTTTAACTGGTTCCTACATCTTGTTCTTGGCATCAAACAAGGAGAAAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTATAGTGTCTGGACTGTaGGATCTCACTTCGCAGGAA +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELIVSGL*DLTSQE
Trigger: TTCCTGCGAAGTGAGATCGCACAGTCCAGACACTAT...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAAATAGTGTCTGGACTGTaGGATCTCACTTCGCAGGAA +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKIVSGL*DLTSQE
Trigger: TTCCTGCGAAGTGAGATCGCACAGTCCAGACACTAT...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGGACGTCATACTTCTCTaGCGAGAGCGATTTAATATC +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQDVILL*RERFNI
Trigger: GATATTAAATCGCTCTCGGCAGAGAAGTATGACGTC...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAATCCATCCTTTGTCTCTaGAGACTTCGATCTGATCAA +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKSILCL*RLRSDQ
Trigger: TTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGA...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACATCCATCCTTTGTCTCTaGAGACTTCGATCTGATCAA +
Preference number: 4 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTSILCL*RLRSDQ
Trigger: TTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGA...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGTCCATCCTTTGTCTCTaGAGACTTCGATCTGATCAA +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKSILCL*RLRSDQ
Trigger: TTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGA...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAAGGAACCAGTTAAACTaGACAGTCCATCCTTTGTCT +
Preference number: 4 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKRNQLN*TVHPLS
Trigger: AGACAAAGGATGGACTGTGCAGTTTAACTGGTTCCT...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTTTGGTGAAGAAGCTCTaGAGGATGGTACCAGGAGTA +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELLVKKL*RMVPGV
Trigger: TACTCCTGGTACCATCCTCCAGAGCTTCTTCACCAA...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp TGTTTGATGCCAAGAACAAGATGTAGGAACCAGTTAAACTGCACAGTCCATCCTCACTGCCTCACCCACTaGAAATTTTTGAGGGGTGTT +
Preference number: 4 (lower is better)
Translates to: CLMPRTRCRNQLNCTVHPHCLTH*KFLRGV
Trigger: AACACCCCTCAAAAATTTCCAGTGGGTGAGGCAGTG...AGGATGGACTGTGCAGTTTAACTGGTTCCTACATCTTGTTCTTGGCATCAAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTACTTGTTGCCCGTGCTaGATGTTCGCTTCCACAAAC +
Preference number: 4 (lower is better)
Translates to: EQRSLALNINQTISNANITCCPC*MFASTN
Trigger: GTTTGTGGAAGCGAACATCCAGCACGGGCAACAAGT...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAACGGAGGAGGAAACGGTaGTCTATTAACAGCAAGTTC +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKRRRKR*SINSKF
Trigger: GAACTTGCTGTTAATAGACCACCGTTTCCTCCTCCG...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTCGGAGGAGGAAACGGTaGTCTATTAACAGCAAGTTC +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELRRRKR*SINSKF
Trigger: GAACTTGCTGTTAATAGACCACCGTTTCCTCCTCCG...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AAGCCTCCTTCCCCTGCATGTGTGTTAGATTCAGCCACAGTGCTTAGAAAACCAAATTGTCCAGCAGGATaGAAATGGACATTGAGTTCT +
Preference number: 4 (lower is better)
Translates to: KPPSPACVLDSATVLRKPNCPAG*KWTLSS
Trigger: AGAACTCAATGTCCATTTCCATCCTGCTGGACAATT...TGGTTTTCTAAGCACTGTGGCTGAATCTAACACACATGCAGGGGAAGGAGGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CCA 90 bp TATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCAACAGCTGGTACGTTTTaGCAACAATTTCTTGCTGCC +
Preference number: 4 (lower is better)
Translates to: YIQCPLCLSAGAFLSSASTAGTF*QQFLAA
Trigger: GGCAGCAAGAAATTGTTGCCAAAACGTACCAGCTGT...TGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGCTGTGAAATAACTTaGGAACTGACGTCATACTTC +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLSCEIT*ELTSYF
Trigger: GAAGTATGACGTCAGTTCCCAAGTTATTTCACAGCT...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GCACAGTCCATCCTTTGTCTCTGCAGACTTCGATCTGATCAAGGAAATATTTCTAGCTCTCGGGGAGATTaGAGTTCTGAAGGCTTTCAA +
Preference number: 4 (lower is better)
Translates to: AQSILCLCRLRSDQGNISSSRGD*SSEGFQ
Trigger: TTGAAAGCCTTCAGAACTCCAATCTCCCCGAGAGCT...AGAAATATTTCCTTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGACTGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGAAGATCAACATGTCTTaGCGCAGATCATCACCATGT +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQKINMS*RRSSPC
Trigger: ACATGGTGATGATCTGCGCCAAGACATGTTGATCTT...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AAGCCTCCTTCCCCTGCATGTGTGTTAGATTCAGCCACAGTGCTTAGAAAACCAACATCCTGGAATTTCTaGAAGTGTGGACTTGTCTTT +
Preference number: 4 (lower is better)
Translates to: KPPSPACVLDSATVLRKPTSWNF*KCGLVF
Trigger: AAAGACAAGTCCACACTTCCAGAAATTCCAGGATGT...TGGTTTTCTAAGCACTGTGGCTGAATCTAACACACATGCAGGGGAAGGAGGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTACATCCTGGAATTTCTaGAAGTGTGGACTTGTCTTT +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLTSWNF*KCGLVF
Trigger: AAAGACAAGTCCACACTTCCAGAAATTCCAGGATGT...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGCTAACACAGACATCCTaGAATTTCTGGAAGTGTGGA +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKLTQTS*NFWKCG
Trigger: TCCACACTTCCAGAAATTCCAGGATGTCTGTGTTAG...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTTCTTTGCTTGTCAGCTaGGGCATTCCTGTCATCAGC +
Preference number: 4 (lower is better)
Translates to: EQRSLALNINQTISNANISLLVS*GIPVIS
Trigger: GCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGA...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp TTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGACAATCCTGGAATTTCTaGAAGTGTGGACTTGTCTTT +
Preference number: 4 (lower is better)
Translates to: FNVLFACQLGHSCHQHHGQSWNF*KCGLVF
Trigger: AAAGACAAGTCCACACTTCCAGAAATTCCAGGATTG...TCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
3UTR CAA 72 bp GAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTaGGTAAAAGGTGTCACCTCCACTTTTCACGTCCAT +
Preference number: 4 (lower is better)
Translates to: EKMTLAVIGYSL*VKGVTSTFHVH
Trigger: ATGGACGTGAAAAGTGGAGGTGACACCTTTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CAA 72 bp CTGATGGTTCTTATTTGTAGCAGAATTAGGTGCTACTaGGCTTCTGGAGACACAAAGGGAATGTTGGGTTCC +
Preference number: 4 (lower is better)
Translates to: LMVLICSRIRCY*ASGDTKGMLGS
Trigger: GGAACCCAACATTCCCTTTGTGTCTCCAGAAGCCAAGTAGCACCTAATTCTGCTACAAATAAGAACCATCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR TCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCATCTGCGGAGACCTTaGTGGTTTGGCTGGTGGTAC +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVHLRRP*WFGWWY
Trigger: GTACCACCAGCCAAACCATCAAGGTCTCCGCAGATG...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAACGTCCAAAGCACTTTaGTCCCAGATCTCCCTTCTG +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEITSKAL*SQISLL
Trigger: CAGAAGGGAGATCTGGGATCAAAGTGCTTTGGACGT...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGCTTTTGCTTAAGCTGTaGAATAACTTGGGAACTGAC +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQLLLKL*NNLGTD
Trigger: GTCAGTTCCCAAGTTATTTCACAGCTTAAGCAAAAG...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGATTTTCCTTGAGCCAGTaGTTCAGGACTTCATCTTTG +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRFSLSQ*FRTSSL
Trigger: CAAAGATGAAGTCCTGAATCACTGGCTCAAGGAAAA...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTCTGCAGACTTCGATCTaGTCAAGGAAATATTTCTTA +
Preference number: 4 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLLQTSI*SRKYFL
Trigger: TAAGAAATATTTCCTTGATCAGATCGAAGTCTGCAG...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATATCATCTGTTCCACATTaGCATGGCCAGCCACATGCA +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEISSVPH*HGQPHA
Trigger: TGCATGTGGCTGGCCATGGCAATGTGGAACAGATGA...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCACTCTCGTGGTCCTTaGCATGGATGGTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVHSRGP*HGWSAA
Trigger: AGCAGCTGACCATCCATGGCAAGGACCACGAGAGTG...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTACAGTGATGGGGTTTTaGAGCAGTAGATCTGTAGGT +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELTVMGF*SSRSVG
Trigger: ACCTACAGATCTACTGCTGCAAAACCCCATCACTGT...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTTTGGCAACAATTTCTTaGTGCCCCCATTTCACTGAG +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELLATIS*CPHFTE
Trigger: CTCAGTGAAATGGGGGCAGCAAGAAATTGTTGCCAA...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp ATTCAAATGAAAGGCAGAGTCTGTGTATGGTTCTTTAGAAGCCTAAGCTTGCGTATAGTGTCTGGACTGTaGGATCTCACTTCGCAGGAA +
Preference number: 4 (lower is better)
Translates to: IQMKGRVCVWFFRSLSLRIVSGL*DLTSQE
Trigger: TTCCTGCGAAGTGAGATCGCACAGTCCAGACACTAT...ACGCAAGCTTAGGCTTCTAAAGAACCATACACAGACTCTGCCTTTCATTTGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR GCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGACGTCATACTTCTCTaGCGAGAGCGATTTAATATC +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRDVILL*RERFNI
Trigger: GATATTAAATCGCTCTCGGCAGAGAAGTATGACGTC...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAAATTCAATGTCCTCTTTaGTTGTCAGCTGGGGCATTC +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKIQCPL*LSAGAF
Trigger: GAATGCCCCAGCTGACAAGCAAAGAGGACATTGAAT...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAAGGAACCAGTTAAACTaGACAGTCCATCCTTTGTCT +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRRNQLN*TVHPLS
Trigger: AGACAAAGGATGGACTGTGCAGTTTAACTGGTTCCT...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAGGAACCAGTTAAACTaGACAGTCCATCCTTTGTCT +
Preference number: 4 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVRNQLN*TVHPLS
Trigger: AGACAAAGGATGGACTGTGCAGTTTAACTGGTTCCT...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCTGGTGGTACCGCGGTaGATGACGATGAAGATGCAG +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVLVVPR*MTMKMQ
Trigger: CTGCATCTTCATCGTCATCCACCGCGGTACCACCAG...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGATGTAGGAACCAGTTAAACTGCACAGTCCATCCTTTGTCTCTGCAGACTTCGAATTGTCCAGCAGGATaGAAATGGACATTGAGTTCT +
Preference number: 4 (lower is better)
Translates to: RCRNQLNCTVHPLSLQTSNCPAG*KWTLSS
Trigger: AGAACTCAATGTCCATTTCCATCCTGCTGGACAATT...CGAAGTCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTGGTTCCTACATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp ATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATAAGATCAACATGTCTTaGCGCAGATCATCACCATGT +
Preference number: 4 (lower is better)
Translates to: IFNVLFACQLGHSCHQHHKINMS*RRSSPC
Trigger: ACATGGTGATGATCTGCGCCAAGACATGTTGATCTT...ATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAAGATCAACATGTCTTaGCGCAGATCATCACCATGT +
Preference number: 4 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVKINMS*RRSSPC
Trigger: ACATGGTGATGATCTGCGCCAAGACATGTTGATCTT...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATATCTTTGCTTGTCAGCTaGGGCATTCCTGTCATCAGC +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEISLLVS*GIPVIS
Trigger: GCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGA...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCTCTTGGCCATCTTGGTaGAGAAGCTCTGGAGGATGG +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVSWPSW*RSSGGW
Trigger: CCATCCTCCAGAGCTTCTTCACCAAGATGGCCAAGA...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGCCCACTGGAAATTTTTaGGGGGTGTTTCACCCACCA +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQPTGNF*GVFHPP
Trigger: TGGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGG...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCTTTCATCTCCGTTCTTaGGGCACTGCCTCACCCACT +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVFHLRS*GTASPT
Trigger: AGTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAA...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGACTTTTGCTTAAGCTGTaGAATAACTTGGGAACTGAC +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRLLLKL*NNLGTD
Trigger: GTCAGTTCCCAAGTTATTTCACAGCTTAAGCAAAAG...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAGGGAGATTGGAGTTCTaGAGGCTTTCAAGCTTTTGC +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIGRLEF*RLSSFC
Trigger: GCAAAAGCTTGAAAGCCTTCAGAACTCCAATCTCCC...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTTTTTCCTTGAGCCAGTaGTTCAGGACTTCATCTTTG +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELFSLSQ*FRTSSL
Trigger: CAAAGATGAAGTCCTGAATCACTGGCTCAAGGAAAA...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
42% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAATTTTCCTTGAGCCAGTaGTTCAGGACTTCATCTTTG +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKFSLSQ*FRTSSL
Trigger: CAAAGATGAAGTCCTGAATCACTGGCTCAAGGAAAA...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTATGTCCGAAGTCTATATaGAATAGGTTTCCTGTCTCT +
Preference number: 4 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVCPKSI*NRFPVS
Trigger: AGAGACAGGAAACCTATTTCATATAGACTTCGGACA...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp TGCTTTTCTCCTTGTTTGATGCCAAGAACAAGATGTAGGAACCAGTTAAACTGCGCACTCTCTCTTTATTaGTGCCCAGGAAACTCTTGT +
Preference number: 4 (lower is better)
Translates to: CFSPCLMPRTRCRNQLNCALSLY*CPGNSC
Trigger: ACAAGAGTTTCCTGGGCATCAATAAAGAGAGAGTGC...GCAGTTTAACTGGTTCCTACATCTTGTTCTTGGCATCAAACAAGGAGAAAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR TCA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGCTGCAGACTTCGATCTaGTCAAGGAAATATTTCTTA +
Preference number: 4 (lower is better)
Translates to: AELSNACTFFCQELREHKLQTSI*SRKYFL
Trigger: TAAGAAATATTTCCTTGATCAGATCGAAGTCTGCAG...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTACAGTGATGGGGTTTTaGAGCAGTAGATCTGTAGGT +
Preference number: 4 (lower is better)
Translates to: EQRSLALNINQTISNANITVMGF*SSRSVG
Trigger: ACCTACAGATCTACTGCTGCAAAACCCCATCACTGT...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGCTTGTCAGGATTGGTTaGGGATGTGAGCTTGTCAGC +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQLVRIG*GCELVS
Trigger: GCTGACAAGCTCACATCCGCAACCAATCCTGACAAG...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp ATTCAAATGAAAGGCAGAGTCTGTGTATGGTTCTTTAGAAGCCTAAGCTTGCGTTTGGCAACAATTTCTTaGTGCCCCCATTTCACTGAG +
Preference number: 4 (lower is better)
Translates to: IQMKGRVCVWFFRSLSLRLATIS*CPHFTE
Trigger: CTCAGTGAAATGGGGGCAGCAAGAAATTGTTGCCAA...ACGCAAGCTTAGGCTTCTAAAGAACCATACACAGACTCTGCCTTTCATTTGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR GCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAATAGTGTCTGGACTGTaGGATCTCACTTCGCAGGAA +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIIVSGL*DLTSQE
Trigger: TTCCTGCGAAGTGAGATCGCACAGTCCAGACACTAT...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGTGTCACCAGTTGAGATaGAACCGTAAGGCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQCHQLR*NRKAEG
Trigger: GCCTTCTGCCTTACGGTTGCATCTCAACTGGTGACA...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAAAGGAACCAGTTAAACTaGACAGTCCATCCTTTGTCT +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKRNQLN*TVHPLS
Trigger: AGACAAAGGATGGACTGTGCAGTTTAACTGGTTCCT...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCGAGGTGAGCTGCTTCTaGAAAGCCAAGGTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVEVSCF*KAKVSS
Trigger: TGAGGAGACCTTGGCTTTCCAGAAGCAGCTCACCTC...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATATTGGTGAAGAAGCTCTaGAGGATGGTACCAGGAGTA +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEILVKKL*RMVPGV
Trigger: TACTCCTGGTACCATCCTCCAGAGCTTCTTCACCAA...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGACTTGTTGCCCGTGCTaGATGTTCGCTTCCACAAAC +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQTCCPC*MFASTN
Trigger: GTTTGTGGAAGCGAACATCCAGCACGGGCAACAAGT...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTACAGCTGGTACGTTTTaGCAACAATTTCTTGCTGCC +
Preference number: 4 (lower is better)
Translates to: EQRSLALNINQTISNANITAGTF*QQFLAA
Trigger: GGCAGCAAGAAATTGTTGCCAAAACGTACCAGCTGT...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGGTTTCTGAACTGCAATaGCCCGGACATTCTCGTCTG +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQVSELQ*PGHSRL
Trigger: CAGACGAGAATGTCCGGGCCATTGCAGTTCAGAAAC...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAAGCTGTGAAATAACTTaGGAACTGACGTCATACTTC +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRSCEIT*ELTSYF
Trigger: GAAGTATGACGTCAGTTCCCAAGTTATTTCACAGCT...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GCGGAGTGCTTTTCTCCTTGTTTGATGCCAAGAACAAGATGTAGGAACCAGTTAAGCTGTGAAATAACTTaGGAACTGACGTCATACTTC +
Preference number: 4 (lower is better)
Translates to: AECFSPCLMPRTRCRNQLSCEIT*ELTSYF
Trigger: GAAGTATGACGTCAGTTCCCAAGTTATTTCACAGCT...TAACTGGTTCCTACATCTTGTTCTTGGCATCAAACAAGGAGAAAAGCACTCCGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAACAGGGGCTTCTTCTTaGAGGCCATCACTTTGCATT +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEITGASS*RPSLCI
Trigger: AATGCAAAGTGATGGCCTCCAAGAAGAAGCCCCTGT...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAAGATCAACATGTCTTaGCGCAGATCATCACCATGT +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELKINMS*RRSSPC
Trigger: ACATGGTGATGATCTGCGCCAAGACATGTTGATCTT...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAACTAACACAGACATCCTaGAATTTCTGGAAGTGTGGA +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKLTQTS*NFWKCG
Trigger: TCCACACTTCCAGAAATTCCAGGATGTCTGTGTTAG...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CTTTCTGCATTTTTCAGAGCACCACCAAAACCAGTAGAGTCATATTGGACCAAGCTTTTGCTTAAGCTGTaGAATAACTTGGGAACTGAC +
Preference number: 4 (lower is better)
Translates to: LSAFFRAPPKPVESYWTKLLLKL*NNLGTD
Trigger: GTCAGTTCCCAAGTTATTTCACAGCTTAAGCAAAAG...CTTGGTCCAATATGACTCTACTGGTTTTGGTGGTGCTCTGAAAAATGCAGAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR TCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGGGGAGATTGGAGTTCTaGAGGCTTTCAAGCTTTTGC +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQGRLEF*RLSSFC
Trigger: GCAAAAGCTTGAAAGCCTTCAGAACTCCAATCTCCC...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAATGTCCGAAGTCTATATaGAATAGGTTTCCTGTCTCT +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKCPKSI*NRFPVS
Trigger: AGAGACAGGAAACCTATTTCATATAGACTTCGGACA...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCTCATCTGTTCCACATTaGCATGGCCAGCCACATGCA +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVSSVPH*HGQPHA
Trigger: TGCATGTGGCTGGCCATGGCAATGTGGAACAGATGA...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCTTGTCAGGATTGGTTaGGGATGTGAGCTTGTCAGC +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVLVRIG*GCELVS
Trigger: GCTGACAAGCTCACATCCGCAACCAATCCTGACAAG...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCTCTCGTCTGAAAAGTTaGAGTCCAGGAGCTGCATGG +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVSRLKS*SPGAAW
Trigger: CCATGCAGCTCCTGGACTGCAACTTTTCAGACGAGA...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCTCCAGTTTCTGAACTaGAATGGCCCGGACATTCTC +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVLQFLN*NGPDIL
Trigger: GAGAATGTCCGGGCCATTGCAGTTCAGAAACTGGAG...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGAGGCTTTCAAGCTTTTaGTTAAGCTGTGAAATAACT +
Preference number: 4 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQRLSSF*LSCEIT
Trigger: AGTTATTTCACAGCTTAAGCAAAAGCTTGAAAGCCT...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGTTGGTGAAGAAGCTCTaGAGGATGGTACCAGGAGTA +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQLVKKL*RMVPGV
Trigger: TACTCCTGGTACCATCCTCCAGAGCTTCTTCACCAA...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAAAATTGTCCAGCAGGATaGAAATGGACATTGAGTTCT +
Preference number: 4 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKNCPAG*KWTLSS
Trigger: AGAACTCAATGTCCATTTCCATCCTGCTGGACAATT...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCAGTCCAGGAGCTGCATaGTTAAGCCAACGTCCAAAG +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVSPGAA*LSQRPK
Trigger: CTTTGGACGTTGGCTTAACCATGCAGCTCCTGGACT...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCTCTTTGCTTGTCAGCTaGGGCATTCCTGTCATCAGC +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVSLLVS*GIPVIS
Trigger: GCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGA...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCGGGAGATTGGAGTTCTaGAGGCTTTCAAGCTTTTGC +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVGRLEF*RLSSFC
Trigger: GCAAAAGCTTGAAAGCCTTCAGAACTCCAATCTCCC...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGTATTTTGTCACCAGTTaGGATGCAACCGTAAGGCAG +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQYFVTS*DATVRQ
Trigger: CTGCCTTACGGTTGCATCTCAACTGGTGACAAAATA...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTCTGCAGACTTCGATCTaGTCAAGGAAATATTTCTTA +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELLQTSI*SRKYFL
Trigger: TAAGAAATATTTCCTTGATCAGATCGAAGTCTGCAG...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGTCTAGCTCATCATCGTaGACATTGCTGATGTCAGTG +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQSSSSS*TLLMSV
Trigger: CACTGACATCAGCAATGTGCACGATGATGAGCTAGA...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAATTCTTTGTCCTCTaGTGTGAGGGGGTTAAGTGG +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVQFFVL*CEGVKW
Trigger: CCACTTAACCCCCTCACAGCAGAGGACAAAGAATTG...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTCTTTCATATCGAAAATaGCAGAGCAATTCTTTGTCC +
Preference number: 4 (lower is better)
Translates to: LKNAAELSNACTFFCQELLSYRK*QSNSLS
Trigger: GGACAAAGAATTGCTCTGGCATTTTCGATATGAAAG...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAAGGCTTTCAAGCTTTTaGTTAAGCTGTGAAATAACT +
Preference number: 4 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRRLSSF*LSCEIT
Trigger: AGTTATTTCACAGCTTAAGCAAAAGCTTGAAAGCCT...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp GCGGAGTGCTTTTCTCCTTGTTTGATGCCAAGAACAAGATGTAGGAACCAGTTAAGGCTTTCAAGCTTTTaGTTAAGCTGTGAAATAACT +
Preference number: 4 (lower is better)
Translates to: AECFSPCLMPRTRCRNQLRLSSF*LSCEIT
Trigger: AGTTATTTCACAGCTTAAGCAAAAGCTTGAAAGCCT...TAACTGGTTCCTACATCTTGTTCTTGGCATCAAACAAGGAGAAAAGCACTCCGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR GCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCCGTGTTACCCACTGTaGTTTGCTGAATTTGAGCGA +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVPCYPL*FAEFER
Trigger: TCGCTCAAATTCAGCAAAGCACAGTGGGTAACACGG...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATATCCATCCTTTGTCTCTaGAGACTTCGATCTGATCAA +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEISILCL*RLRSDQ
Trigger: TTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGA...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTAGCTGTGAAATAACTTaGGAACTGACGTCATACTTC +
Preference number: 4 (lower is better)
Translates to: EQRSLALNINQTISNANISCEIT*ELTSYF
Trigger: GAAGTATGACGTCAGTTCCCAAGTTATTTCACAGCT...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAAAGATCAACATGTCTTaGCGCAGATCATCACCATGT +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIKINMS*RRSSPC
Trigger: ACATGGTGATGATCTGCGCCAAGACATGTTGATCTT...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTACATCCTGGAATTTCTaGAAGTGTGGACTTGTCTTT +
Preference number: 4 (lower is better)
Translates to: EQRSLALNINQTISNANITSWNF*KCGLVF
Trigger: AAAGACAAGTCCACACTTCCAGAAATTCCAGGATGT...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CAA 72 bp GCCAAAATACATGGTGGACACACGAGAAAACAGGTATaGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATA +
Preference number: 4 (lower is better)
Translates to: AKIHGGHTRKQV*PVILTKGLSEI
Trigger: TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTGTCCACCATGTATTTTGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CAA 72 bp ATTTTTCAGAGCACCACCAAAACCAGTAGAGTCATATaGGACCAAGTCTACAACGGAAGCTTTGTGTCTTTT +
Preference number: 4 (lower is better)
Translates to: IFQSTTKTSRVI*DQVYNGSFVSF
Trigger: AAAAGACACAAAGCTTCCGTTGTAGACTTGGTCCAATATGACTCTACTGGTTTTGGTGGTGCTCTGAAAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR GCA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGGACGTCATACTTCTCTaGCGAGAGCGATTTAATATC +
Preference number: 4 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQDVILL*RERFNI
Trigger: GATATTAAATCGCTCTCGGCAGAGAAGTATGACGTC...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAAATTGTCCAGCAGGATaGAAATGGACATTGAGTTCT +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEINCPAG*KWTLSS
Trigger: AGAACTCAATGTCCATTTCCATCCTGCTGGACAATT...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CAA 72 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTaGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAA +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMS*KSPQVQEEVQE
Trigger: TTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAAGGCTTTCAAGCTTTTaGTTAAGCTGTGAAATAACT +
Preference number: 4 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIRLSSF*LSCEIT
Trigger: AGTTATTTCACAGCTTAAGCAAAAGCTTGAAAGCCT...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCACATCCTGGAATTTCTaGAAGTGTGGACTTGTCTTT +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVTSWNF*KCGLVF
Trigger: AAAGACAAGTCCACACTTCCAGAAATTCCAGGATGT...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR TCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCTGCAGACTTCGATCTaGTCAAGGAAATATTTCTTA +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVLQTSI*SRKYFL
Trigger: TAAGAAATATTTCCTTGATCAGATCGAAGTCTGCAG...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR GCA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCTTTCATATCGAAAATaGCAGAGCAATTCTTTGTCC +
Preference number: 4 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVLSYRK*QSNSLS
Trigger: GGACAAAGAATTGCTCTGGCATTTTCGATATGAAAG...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
3UTR CAA 72 bp TGGCTTTTACTTATATGCAAGTCTATGGAGTTGAAATaGCATTCTTTGGGAAATGGAAGAATGAAACCCAGT +
Preference number: 4 (lower is better)
Translates to: WLLLICKSMELK*HSLGNGRMKPS
Trigger: ACTGGGTTTCATTCTTCCATTTCCCAAAGAATGCAATTTCAACTCCATAGACTTGCATATAAGTAAAAGCCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS GCA 90 bp CAGTACGAACTCAATGGGGATGAGCTCCATGGAAGACAGGCTGCCTaGTGCGCTGCGTGGCTTCATCCTCCGGCGCCGGCGGAGGTTGTC +
Preference number: 5 (lower is better)
Translates to: QYELNGDELHGRQAA*CAAWLHPPAPAEVV
Trigger: GACAACCTCCGCCGGCGCCGGAGGATGAAGCCACGCAGCGCAGCAGGCAGCCTGTCTTCCATGGAGCTCATCCCCATTGAGTTCGTACTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 90 bp CGGGCCCAATCGGTGGTAGAACTCCGCAGCCACACTGGTCTCCAGTaGGCGCAGCCACACCTGAGCTTTCATCTGTTCCACATTGCCATG +
Preference number: 5 (lower is better)
Translates to: RAQSVVELRSHTGLQ*AQPHLSFHLFHIAM
Trigger: CATGGCAATGTGGAACAGATGAAAGCTCAGGTGTGGCTGCGCGCACTGGAGACCAGTGTGGCTGCGGAGTTCTACCACCGATTGGGCCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGACACTCTCGTGGTCCTaGCCATGGATGGTCAGCTGC +
Preference number: 5 (lower is better)
Translates to: EGQGSGSELVFSAWASQWTLSWS*PWMVSC
Trigger: GCAGCTGACCATCCATGGCAAGGACCACGAGAGTGT...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGTTGGCAGAGGACTTGTaGCCCGTGCTGGATGTTCGC +
Preference number: 5 (lower is better)
Translates to: EGQGSGSELVFSAWASQWLAEDL*PVLDVR
Trigger: GCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAA...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGAGGGCTGGTTCTCCTTaGGCAGAGGACTTGTTGCCC +
Preference number: 5 (lower is better)
Translates to: EGQGSGSELVFSAWASQWRAGSP*AEDLLP
Trigger: GGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCCT...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS TCA 90 bp TCTCGTGGTCCTTGCCATGGATGGTCAGCTGCTCGTGGTAGCCGGTaGCTCCAGTGCAGTCATCCACCAGCGGCCATTCTTCCTTCCTCA +
Preference number: 5 (lower is better)
Translates to: SRGPCHGWSAARGSR*LQCSHPPAAILPSS
Trigger: TGAGGAAGGAAGAATGGCCGCTGGTGGATGACTGCACTGGAGTCACCGGCTACCACGAGCAGCTGACCATCCATGGCAAGGACCACGAGA
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 90 bp CTTTCGAAGCTGATTGGGCATTTCAGCCCGAACCCTGTCTCCCTCTaGGTCAGGGGTGGGCCGGTGCTTAGGCAAAGCTATGGGGTGACA +
Preference number: 5 (lower is better)
Translates to: LSKLIGHFSPNPVSL*VRGGPVLRQSYGVT
Trigger: TGTCACCCCATAGCTTTGCCTAAGCACCGGCCCACCCCTGACCCAGAGGGAGACAGGGTTCGGGCTGAAATGCCCAATCAGCTTCGAAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 90 bp CCAGCCACATGCAGCAGCGCTGTTTCTGGAGTCTTGCTGATGCGCTaGCTGGTGGGCAGTACGAACTCAATGGGGATGAGCTCCATGGAA +
Preference number: 5 (lower is better)
Translates to: PATCSSAVSGVLLMR*LVGSTNSMGMSSME
Trigger: TTCCATGGAGCTCATCCCCATTGAGTTCGTACTGCCCACCAGCCAGCGCATCAGCAAGACTCCAGAAACAGCGCTGCTGCATGTGGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 90 bp GGCTTAGGGCTGGTTCTCCTTTGGCAGAGGACTTGTTGCCCGTGCTaGATGTTCGCTTCCACAAACACAGTGAGGTCGGTGTTCCGAGGC +
Preference number: 5 (lower is better)
Translates to: GLGLVLLWQRTCCPC*MFASTNTVRSVFRG
Trigger: GCCTCGGAACACCGACCTCACTGTGTTTGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCCTAAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGCACAGGGGCTTCTTCTaGGAGGCCATCACTTTGCAT +
Preference number: 5 (lower is better)
Translates to: EGQGSGSELVFSAWASQWHRGFF*EAITLH
Trigger: ATGCAAAGTGATGGCCTCCAAGAAGAAGCCCCTGTG...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS GCA 90 bp TCTGCGAAGGGCTTAGGGCTGGTTCTCCTTTGGCAGAGGACTTGTTaGCCGTGCTGGATGTTCGCTTCCACAAACACAGTGAGGTCGGTG +
Preference number: 5 (lower is better)
Translates to: SAKGLGLVLLWQRTC*PCWMFASTNTVRSV
Trigger: CACCGACCTCACTGTGTTTGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCCTAAGCCCTTCGCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 90 bp CTGTTCCACATTGCCATGGCCAGCCACATGCAGCAGCGCTGTTTCTaGAGTCTTGCTGATGCGCTGGCTGGTGGGCAGTACGAACTCAAT +
Preference number: 5 (lower is better)
Translates to: LFHIAMASHMQQRCF*SLADALAGGQYELN
Trigger: ATTGAGTTCGTACTGCCCACCAGCCAGCGCATCAGCAAGACTCCAGAAACAGCGCTGCTGCATGTGGCTGGCCATGGCAATGTGGAACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGTTCTTCTTGGCCATCTaGGTGAAGAAGCTCTGGAGG +
Preference number: 5 (lower is better)
Translates to: EGQGSGSELVFSAWASQWFFLAI*VKKLWR
Trigger: CCTCCAGAGCTTCTTCACCAAGATGGCCAAGAAGAA...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CTCCCAAGGCTCAGTGATCATTGGAAGAGGACCTGGAGAGACGGTGAGAGACAGACACTCTCGTGGTCCTaGCCATGGATGGTCAGCTGC +
Preference number: 5 (lower is better)
Translates to: LPRLSDHWKRTWRDGERQTLSWS*PWMVSC
Trigger: GCAGCTGACCATCCATGGCAAGGACCACGAGAGTGT...CTGTCTCTCACCGTCTCTCCAGGTCCTCTTCCAATGATCACTGAGCCTTGGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR CAA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGTTCTCCTTGTCAGGATaGGTTGCGGATGTGAGCTTG +
Preference number: 5 (lower is better)
Translates to: EGQGSGSELVFSAWASQWFSLSG*VADVSL
Trigger: CAAGCTCACATCCGCAACCAATCCTGACAAGGAGAA...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGTTCAGGACTTCATCTTaGAATGCCCCCGTGTTACCC +
Preference number: 5 (lower is better)
Translates to: EGQGSGSELVFSAWASQWFRTSS*NAPVLP
Trigger: GGGTAACACGGGGGCATTCAAAGATGAAGTCCTGAA...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS GCA 90 bp AAGGGCTTAGGGCTGGTTCTCCTTTGGCAGAGGACTTGTTGCCCGTaGTGGATGTTCGCTTCCACAAACACAGTGAGGTCGGTGTTCCGA +
Preference number: 5 (lower is better)
Translates to: KGLGLVLLWQRTCCP*WMFASTNTVRSVFR
Trigger: TCGGAACACCGACCTCACTGTGTTTGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCCTAAGCCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 90 bp GGGCTTTGCCCTTGGACTCGGAGCCTGGAGTCTCTGCAGAAGCCTTaGTGGACAGTGATGGGGTTTTGCAGCAGTAGATCTGTAGGTTCA +
Preference number: 5 (lower is better)
Translates to: GLCPWTRSLESLQKP*WTVMGFCSSRSVGS
Trigger: TGAACCTACAGATCTACTGCTGCAAAACCCCATCACTGTCCAGCAAGGCTTCTGCAGAGACTCCAGGCTCCGAGTCCAAGGGCAAAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGGCTGTTTCTGGAGTCTaGCTGATGCGCTGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQAVSGV*LMRWLV
Trigger: CACCAGCCAGCGCATCAGCAAGACTCCAGAAACAGC...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGTCATCATCGTGCACATaGCTGATGTCAGTGACGTCA +
Preference number: 5 (lower is better)
Translates to: EGQGSGSELVFSAWASQWSSSCT*LMSVTS
Trigger: TGACGTCACTGACATCAGCAATGTGCACGATGATGA...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGTTGGCAGAGGACTTGTaGCCCGTGCTGGATGTTCGC +
Preference number: 5 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQLAEDL*PVLDVR
Trigger: GCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAA...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGAGGGCTGGTTCTCCTTaGGCAGAGGACTTGTTGCCC +
Preference number: 5 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQRAGSP*AEDLLP
Trigger: GGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCCT...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp ACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGGCGCGTGCACCAAATCCCAGGGCAAGTCTTTGATTTaGATGCCAAACTCCAGCCAC +
Preference number: 5 (lower is better)
Translates to: TAARTSPRKAQGACTKSQGKSLI*MPNSSH
Trigger: GTGGCTGGAGTTTGGCATCAAAATCAAAGACTTGCC...CTGGGATTTGGTGCACGCGCCCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR CAA 90 bp GCAGCTGCACATATGAACTCACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGGTCTCTGCAGAAGCCTaGCTGGACAGTGATGGGGTT +
Preference number: 5 (lower is better)
Translates to: AAAHMNSQQLGQAPGKLRVSAEA*LDSDGV
Trigger: AACCCCATCACTGTCCAGCAAGGCTTCTGCAGAGAC...CCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGTGAGTTCATATGTGCAGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR CAA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGTATGATCGCCTCCAATaGCTTTCGAAGCTGATTGGG +
Preference number: 5 (lower is better)
Translates to: EGQGSGSELVFSAWASQWYDRLQ*LSKLIG
Trigger: CCCAATCAGCTTCGAAAGCAATTGGAGGCGATCATA...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS GCA 90 bp CATCTTGGTGAAGAAGCTCTGGAGGATGGTACCAGGAGTATCATCTaGGGAGACCTTGATGGTTTGGCTGGTGGTACCGCGGTGGATGAC +
Preference number: 5 (lower is better)
Translates to: HLGEEALEDGTRSII*GDLDGLAGGTAVDD
Trigger: GTCATCCACCGCGGTACCACCAGCCAAACCATCAAGGTCTCCGCAGATGATACTCCTGGTACCATCCTCCAGAGCTTCTTCACCAAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 90 bp GGCGTGTCGAGCACCAGGTGTATTTCATCTCCGTTCTTGAGGCACTaGCTCACCCACTGGAAATTTTTGAGGGGTGTTTCACCCACCAGG +
Preference number: 5 (lower is better)
Translates to: GVSSTRCISSPFLRH*LTHWKFLRGVSPTR
Trigger: CCTGGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAATACACCTGGTGCTCGACACGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 90 bp GCAGGTACGCCTCCAGGATCACAGCGAACCTCTGCTGATAGTGTCTaGACTGTGCGATCTCACTTCGCAGGAACCAGAACAAGAAGTGAC +
Preference number: 5 (lower is better)
Translates to: AGTPPGSQRTSADSV*TVRSHFAGTRTRSD
Trigger: GTCACTTCTTGTTCTGGTTCCTGCGAAGTGAGATCGCACAGTCCAGACACTATCAGCAGAGGTTCGCTGTGATCCTGGAGGCGTACCTGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGCCTTTGGGCAAGTCTTaGATTTTGATGCCAAACTCC +
Preference number: 5 (lower is better)
Translates to: EGQGSGSELVFSAWASQWPLGKS*ILMPNS
Trigger: GGAGTTTGGCATCAAAATCAAAGACTTGCCCAAAGG...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAATGTCCTCGTTGCGGATGTGAGCTaGTCAGCATTGAAGCTGCCC +
Preference number: 5 (lower is better)
Translates to: VLLAFSHGEGIPDIFNVLVADVS*SALKLP
Trigger: GGGCAGCTTCAATGCTGACAAGCTCACATCCGCAAC...GAGGACATTGAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGGGATGGAAATGGACATaGAGTTCTCCTTGTCAGGAT +
Preference number: 5 (lower is better)
Translates to: EGQGSGSELVFSAWASQWGWKWT*SSPCQD
Trigger: ATCCTGACAAGGAGAACTCAATGTCCATTTCCATCC...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGTGCCAGAGCAATTCTTaGTCCTCTGCTGTGAGGGGG +
Preference number: 5 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQCQSNS*SSAVRG
Trigger: CCCCCTCACAGCAGAGGACAAAGAATTGCTCTGGCA...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAGGGGCAAGGCTCAGGCTCAGAGCTTGTGTTCAGTGCCTGGGCATCTCAGTGGATTCCAATGGTTTCGTaGGATAGGACTGTGGGATCA +
Preference number: 5 (lower is better)
Translates to: EGQGSGSELVFSAWASQWIPMVS*DRTVGS
Trigger: TGATCCCACAGTCCTATCCAACGAAACCATTGGAAT...CCACTGAGATGCCCAGGCACTGAACACAAGCTCTGAGCCTGAGCCTTGCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp ACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGGCGCGTGCACCAAATCCCAGCTATTTTGTCACCAGTaGAGATGCAACCGTAAGGCA +
Preference number: 5 (lower is better)
Translates to: TAARTSPRKAQGACTKSQLFCHQ*RCNRKA
Trigger: TGCCTTACGGTTGCATCTCAACTGGTGACAAAATAG...CTGGGATTTGGTGCACGCGCCCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS GCA 90 bp GGTGGTCTATTAACAGCAAGTTCACGTAATAGAGAAGCTGGGCTTTaGCCTTGGACTCGGAGCCTGGAGTCTCTGCAGAAGCCTTGCTGG +
Preference number: 5 (lower is better)
Translates to: GGLLTASSRNREAGL*PWTRSLESLQKPCW
Trigger: CCAGCAAGGCTTCTGCAGAGACTCCAGGCTCCGAGTCCAAGGGCAAAGCCCAGCTTCTCTATTACGTGAACTTGCTGTTAATAGACCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 90 bp CGCCTCCAGGATCACAGCGAACCTCTGCTGATAGTGTCTGGACTGTaGGATCTCACTTCGCAGGAACCAGAACAAGAAGTGACCGATTCT +
Preference number: 5 (lower is better)
Translates to: RLQDHSEPLLIVSGL*DLTSQEPEQEVTDS
Trigger: AGAATCGGTCACTTCTTGTTCTGGTTCCTGCGAAGTGAGATCGCACAGTCCAGACACTATCAGCAGAGGTTCGCTGTGATCCTGGAGGCG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 90 bp ACTTTCTGTAACATCTCAATCACATGGACCTGCTGTGTGAAGTCCTaGAACATGGCTGTGCCACAGCCTCGCAGGTACGCCTCCAGGATC +
Preference number: 5 (lower is better)
Translates to: TFCNISITWTCCVKS*NMAVPQPRRYASRI
Trigger: GATCCTGGAGGCGTACCTGCGAGGCTGTGGCACAGCCATGTTGCAGGACTTCACACAGCAGGTCCATGTGATTGAGATGTTACAGAAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 90 bp TGGAGGATGGTACCAGGAGTATCATCTGCGGAGACCTTGATGGTTTaGCTGGTGGTACCGCGGTGGATGACGATGAAGATGCAGTTGTTG +
Preference number: 5 (lower is better)
Translates to: WRMVPGVSSAETLMV*LVVPRWMTMKMQLL
Trigger: CAACAACTGCATCTTCATCGTCATCCACCGCGGTACCACCAGCCAAACCATCAAGGTCTCCGCAGATGATACTCCTGGTACCATCCTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGCTGTTTCTGGAGTCTaGCTGATGCGCTGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: VQLATSCFVQEKMTLAVIAVSGV*LMRWLV
Trigger: CACCAGCCAGCGCATCAGCAAGACTCCAGAAACAGC...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CTCCCAAGGCTCAGTGATCATTGGAAGAGGACCTGGAGAGACGGTGAGAGACAGTCAATGCCTCTGATCTaGACCCTGAACTTTCGGTCG +
Preference number: 5 (lower is better)
Translates to: LPRLSDHWKRTWRDGERQSMPLI*TLNFRS
Trigger: CGACCGAAAGTTCAGGGTCAAGATCAGAGGCATTGA...CTGTCTCTCACCGTCTCTCCAGGTCCTCTTCCAATGATCACTGAGCCTTGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR CAA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTCCCTGCTCCTCTGCCTaGCCAGATATCTGCCACATG +
Preference number: 5 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLPCSSA*PDICHM
Trigger: CATGTGGCAGATATCTGGCAAGGCAGAGGAGCAGGG...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATACCCTGCTCCTCTGCCTaGCCAGATATCTGCCACATG +
Preference number: 5 (lower is better)
Translates to: VQLATSCFVQEKMTLAVIPCSSA*PDICHM
Trigger: CATGTGGCAGATATCTGGCAAGGCAGAGGAGCAGGG...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GCAGCTGCACATATGAACTCACAGCAGCTAGGACAAGCCCCAGGAAAGCTCAGGTTGGAGGCCATCACTTaGCATTTCTCGATCACCAGG +
Preference number: 5 (lower is better)
Translates to: AAAHMNSQQLGQAPGKLRLEAIT*HFSITR
Trigger: CCTGGTGATCGAGAAATGCAAAGTGATGGCCTCCAA...CCTGAGCTTTCCTGGGGCTTGTCCTAGCTGCTGTGAGTTCATATGTGCAGCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS CCA 90 bp ACCAGGTGTATTTCATCTCCGTTCTTGAGGCACTGCCTCACCCACTaGAAATTTTTGAGGGGTGTTTCACCCACCAGGTACTCATCGCGG +
Preference number: 5 (lower is better)
Translates to: TRCISSPFLRHCLTH*KFLRGVSPTRYSSR
Trigger: CCGCGATGAGTACCTGGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAATACACCTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 90 bp CTTTGCCCTTGGACTCGGAGCCTGGAGTCTCTGCAGAAGCCTTGCTaGACAGTGATGGGGTTTTGCAGCAGTAGATCTGTAGGTTCAATA +
Preference number: 5 (lower is better)
Translates to: LCPWTRSLESLQKPC*TVMGFCSSRSVGSI
Trigger: TATTGAACCTACAGATCTACTGCTGCAAAACCCCATCACTGTCCAGCAAGGCTTCTGCAGAGACTCCAGGCTCCGAGTCCAAGGGCAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 90 bp CTATTAACAGCAAGTTCACGTAATAGAGAAGCTGGGCTTTGCCCTTaGACTCGGAGCCTGGAGTCTCTGCAGAAGCCTTGCTGGACAGTG +
Preference number: 5 (lower is better)
Translates to: LLTASSRNREAGLCP*TRSLESLQKPCWTV
Trigger: CACTGTCCAGCAAGGCTTCTGCAGAGACTCCAGGCTCCGAGTCCAAGGGCAAAGCCCAGCTTCTCTATTACGTGAACTTGCTGTTAATAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 90 bp TGGCCCGGACATTCTCGTCTGAAAAGTTGCAGTCCAGGAGCTGCATaGTTAAGCCAACGTCCAAAGCACTTTGATCCCAGATCTCCCTTC +
Preference number: 5 (lower is better)
Translates to: WPGHSRLKSCSPGAA*LSQRPKHFDPRSPF
Trigger: GAAGGGAGATCTGGGATCAAAGTGCTTTGGACGTTGGCTTAACCATGCAGCTCCTGGACTGCAACTTTTCAGACGAGAATGTCCGGGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CCGGATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGACACTCTCGTGGTCCTaGCCATGGATGGTCAGCTGC +
Preference number: 5 (lower is better)
Translates to: PDIFNVLFACQLGHSCHQTLSWS*PWMVSC
Trigger: GCAGCTGACCATCCATGGCAAGGACCACGAGAGTGT...CTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATATCCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGTCAATGCCTCTGATCTaGACCCTGAACTTTCGGTCG +
Preference number: 5 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQSMPLI*TLNFRS
Trigger: CGACCGAAAGTTCAGGGTCAAGATCAGAGGCATTGA...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AAATATTTCTTAGCGTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATACCTTTGGCAGAGGACTaGTTGCCCGTGCTGGATGTT +
Preference number: 5 (lower is better)
Translates to: KYFLASSSLFPTVRASRIPLAED*LPVLDV
Trigger: AACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGG...TATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGACGCTAAGAAATATTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGGGCTGGTTCTCCTTaGGCAGAGGACTTGTTGCCC +
Preference number: 5 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLRAGSP*AEDLLP
Trigger: GGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCCT...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp TTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAAGGGCTGGTTCTCCTTaGGCAGAGGACTTGTTGCCC +
Preference number: 5 (lower is better)
Translates to: FNVLFACQLGHSCHQHHGRAGSP*AEDLLP
Trigger: GGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCCT...TCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp TTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGACCCTGCTCCTCTGCCTaGCCAGATATCTGCCACATG +
Preference number: 5 (lower is better)
Translates to: FNVLFACQLGHSCHQHHGPCSSA*PDICHM
Trigger: CATGTGGCAGATATCTGGCAAGGCAGAGGAGCAGGG...TCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGTGAGCTTGTCAGCATaGAAGCTGCCCTGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: VQLATSCFVQEKMTLAVIVSLSA*KLPCSS
Trigger: AGAGGAGCAGGGCAGCTTCAATGCTGACAAGCTCAC...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CTCCCAAGGCTCAGTGATCATTGGAAGAGGACCTGGAGAGACGGTGAGAGACAGTATGATCGCCTCCAATaGCTTTCGAAGCTGATTGGG +
Preference number: 5 (lower is better)
Translates to: LPRLSDHWKRTWRDGERQYDRLQ*LSKLIG
Trigger: CCCAATCAGCTTCGAAAGCAATTGGAGGCGATCATA...CTGTCTCTCACCGTCTCTCCAGGTCCTCTTCCAATGATCACTGAGCCTTGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR CAA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTTGCCAGAGCAATTCTTaGTCCTCTGCTGTGAGGGGG +
Preference number: 5 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLCQSNS*SSAVRG
Trigger: CCCCCTCACAGCAGAGGACAAAGAATTGCTCTGGCA...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGTTCTCGTCTGAAAAGTaGCAGTCCAGGAGCTGCATG +
Preference number: 5 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQFSSEK*QSRSCM
Trigger: CATGCAGCTCCTGGACTGCAACTTTTCAGACGAGAA...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGTTCAGGACTTCATCTTaGAATGCCCCCGTGTTACCC +
Preference number: 5 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQFRTSS*NAPVLP
Trigger: GGGTAACACGGGGGCATTCAAAGATGAAGTCCTGAA...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS GCA 90 bp GATTTTGATGCCAAACTCCAGCCACACATTCCAGAGTACCTCTTCTaGGAAGGGCTTAGGGCTGGTTCTCCTTTGGCAGAGGACTTGTTG +
Preference number: 5 (lower is better)
Translates to: DFDAKLQPHIPEYLF*EGLRAGSPLAEDLL
Trigger: CAACAAGTCCTCTGCCAAAGGAGAACCAGCCCTAAGCCCTTCGCAGAAGAGGTACTCTGGAATGTGTGGCTGGAGTTTGGCATCAAAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 90 bp AGTGACCGATTCTTTTGTTCCTCAAGCCACGCTTCAGCAGGAATCTaGCCAGCGCACTGTCGTGGTACGGTTCAAATTTCACAGCCTGTA +
Preference number: 5 (lower is better)
Translates to: SDRFFCSSSHASAGI*PAHCRGTVQISQPV
Trigger: TACAGGCTGTGAAATTTGAACCGTACCACGACAGTGCGCTGGCCAGATTCCTGCTGAAGCGTGGCTTGAGGAACAAAAGAATCGGTCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAGCTGTTTCTGGAGTCTaGCTGATGCGCTGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKAVSGV*LMRWLV
Trigger: CACCAGCCAGCGCATCAGCAAGACTCCAGAAACAGC...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CCAGTTAAACTGCACAGTCCATCCTTTGTCTCTGCAGACTTCGATCTGATCAAGGCTGTTTCTGGAGTCTaGCTGATGCGCTGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: PVKLHSPSFVSADFDLIKAVSGV*LMRWLV
Trigger: CACCAGCCAGCGCATCAGCAAGACTCCAGAAACAGC...CTTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTATTTCATCTCCGTTCTaGAGGCACTGCCTCACCCAC +
Preference number: 5 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLISSPF*RHCLTH
Trigger: GTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAAT...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp ATTACATTCATAGAGAGAAGCACAGTTTCAGCACAGGGCATGGCCTGTACAGGAACACTCTCGTGGTCCTaGCCATGGATGGTCAGCTGC +
Preference number: 5 (lower is better)
Translates to: ITFIERSTVSAQGMACTGTLSWS*PWMVSC
Trigger: GCAGCTGACCATCCATGGCAAGGACCACGAGAGTGT...TCCTGTACAGGCCATGCCCTGTGCTGAAACTGTGCTTCTCTCTATGAATGTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CAA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAATTGGCAGAGGACTTGTaGCCCGTGCTGGATGTTCGC +
Preference number: 5 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKLAEDL*PVLDVR
Trigger: GCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAA...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AAGCCTCCTTCCCCTGCATGTGTGTTAGATTCAGCCACAGTGCTTAGAAAACCACCTTTGGCAGAGGACTaGTTGCCCGTGCTGGATGTT +
Preference number: 5 (lower is better)
Translates to: KPPSPACVLDSATVLRKPPLAED*LPVLDV
Trigger: AACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGG...TGGTTTTCTAAGCACTGTGGCTGAATCTAACACACATGCAGGGGAAGGAGGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CAA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGCCCTGCTCCTCTGCCTaGCCAGATATCTGCCACATG +
Preference number: 5 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQPCSSA*PDICHM
Trigger: CATGTGGCAGATATCTGGCAAGGCAGAGGAGCAGGG...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTGTGAGCTTGTCAGCATaGAAGCTGCCCTGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLVSLSA*KLPCSS
Trigger: AGAGGAGCAGGGCAGCTTCAATGCTGACAAGCTCAC...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGAACGTCCAAAGCACTTaGATCCCAGATCTCCCTTCT +
Preference number: 5 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQNVQST*IPDLPS
Trigger: AGAAGGGAGATCTGGGATCAAAGTGCTTTGGACGTT...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GGCATCCCGGATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCACAGGGGCTTCTTCTaGGAGGCCATCACTTTGCAT +
Preference number: 5 (lower is better)
Translates to: GIPDIFNVLFACQLGHSCHRGFF*EAITLH
Trigger: ATGCAAAGTGATGGCCTCCAAGAAGAAGCCCCTGTG...ACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATATCCGGGATGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS TCA 90 bp TGTCTGGACTGTGCGATCTCACTTCGCAGGAACCAGAACAAGAAGTaGCCGATTCTTTTGTTCCTCAAGCCACGCTTCAGCAGGAATCTG +
Preference number: 5 (lower is better)
Translates to: CLDCAISLRRNQNKK*PILLFLKPRFSRNL
Trigger: CAGATTCCTGCTGAAGCGTGGCTTGAGGAACAAAAGAATCGGTCACTTCTTGTTCTGGTTCCTGCGAAGTGAGATCGCACAGTCCAGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 90 bp CCAGTTTCTGAACTGCAATGGCCCGGACATTCTCGTCTGAAAAGTTaGAGTCCAGGAGCTGCATGGTTAAGCCAACGTCCAAAGCACTTT +
Preference number: 5 (lower is better)
Translates to: PVSELQWPGHSRLKS*SPGAAWLSQRPKHF
Trigger: AAAGTGCTTTGGACGTTGGCTTAACCATGCAGCTCCTGGACTGCAACTTTTCAGACGAGAATGTCCGGGCCATTGCAGTTCAGAAACTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 90 bp TGGTTAAGCCAACGTCCAAAGCACTTTGATCCCAGATCTCCCTTCTaGCTAACAGCTGGTACGTTTTGGCAACAATTTCTTGCTGCCCCC +
Preference number: 5 (lower is better)
Translates to: WLSQRPKHFDPRSPF*LTAGTFWQQFLAAP
Trigger: GGGGGCAGCAAGAAATTGTTGCCAAAACGTACCAGCTGTTAGCCAGAAGGGAGATCTGGGATCAAAGTGCTTTGGACGTTGGCTTAACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 90 bp GTAAAACGTCATCGTCCTCTAAGCTCTCCAGTTTCTGAACTGCAATaGCCCGGACATTCTCGTCTGAAAAGTTGCAGTCCAGGAGCTGCA +
Preference number: 5 (lower is better)
Translates to: VKRHRPLSSPVSELQ*PGHSRLKSCSPGAA
Trigger: TGCAGCTCCTGGACTGCAACTTTTCAGACGAGAATGTCCGGGCCATTGCAGTTCAGAAACTGGAGAGCTTAGAGGACGATGACGTTTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp TATTTCTTAGCGTCCTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTTCTTCTTGGCCATCTaGGTGAAGAAGCTCTGGAGG +
Preference number: 5 (lower is better)
Translates to: YFLASSSLFPTVRASRIYFFLAI*VKKLWR
Trigger: CCTCCAGAGCTTCTTCACCAAGATGGCCAAGAAGAA...ATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAGGACGCTAAGAAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp TTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAATTTCATCTCCGTTCTaGAGGCACTGCCTCACCCAC +
Preference number: 5 (lower is better)
Translates to: FNVLFACQLGHSCHQHHGISSPF*RHCLTH
Trigger: GTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAAT...TCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAACACTCTCGTGGTCCTaGCCATGGATGGTCAGCTGC +
Preference number: 5 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVTLSWS*PWMVSC
Trigger: GCAGCTGACCATCCATGGCAAGGACCACGAGAGTGT...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAATGTCCTCTTTTCAATGCCTCTGATCTaGACCCTGAACTTTCGGTCG +
Preference number: 5 (lower is better)
Translates to: LLAFSHGEGIPDIFNVLFSMPLI*TLNFRS
Trigger: CGACCGAAAGTTCAGGGTCAAGATCAGAGGCATTGA...AAAGAGGACATTGAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGATTGGCAGAGGACTTGTaGCCCGTGCTGGATGTTCGC +
Preference number: 5 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRLAEDL*PVLDVR
Trigger: GCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAA...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp ACAAGATGTAGGAACCAGTTAAACTGCACAGTCCATCCTTTGTCTCTGCAGACTTTGGCAGAGGACTTGTaGCCCGTGCTGGATGTTCGC +
Preference number: 5 (lower is better)
Translates to: TRCRNQLNCTVHPLSLQTLAEDL*PVLDVR
Trigger: GCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAA...AGTCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTGGTTCCTACATCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACACCTTTGGCAGAGGACTaGTTGCCCGTGCTGGATGTT +
Preference number: 5 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTPLAED*LPVLDV
Trigger: AACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGG...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGTCTCTGCAGAAGCCTaGCTGGACAGTGATGGGGTT +
Preference number: 5 (lower is better)
Translates to: AELSNACTFFCQELREHKVSAEA*LDSDGV
Trigger: AACCCCATCACTGTCCAGCAAGGCTTCTGCAGAGAC...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGATGTAGGAACCAGTTAAACTGCACAGTCCATCCTTTGTCTCTGCAGACTTCGGTGAGCTTGTCAGCATaGAAGCTGCCCTGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: RCRNQLNCTVHPLSLQTSVSLSA*KLPCSS
Trigger: AGAGGAGCAGGGCAGCTTCAATGCTGACAAGCTCAC...CGAAGTCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTGGTTCCTACATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGTGCCAGAGCAATTCTTaGTCCTCTGCTGTGAGGGGG +
Preference number: 5 (lower is better)
Translates to: AELSNACTFFCQELREHKCQSNS*SSAVRG
Trigger: CCCCCTCACAGCAGAGGACAAAGAATTGCTCTGGCA...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CCAGTTAAACTGCACAGTCCATCCTTTGTCTCTGCAGACTTCGATCTGATCAAGTGCCAGAGCAATTCTTaGTCCTCTGCTGTGAGGGGG +
Preference number: 5 (lower is better)
Translates to: PVKLHSPSFVSADFDLIKCQSNS*SSAVRG
Trigger: CCCCCTCACAGCAGAGGACAAAGAATTGCTCTGGCA...CTTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp AGGGGGAACAGAACAAGAGGGAAAGATGACATTTGTGGGCATCCAGGGGTCCAGAACAGCTGGTACGTTTaGGCAACAATTTCTTGCTGC +
Preference number: 5 (lower is better)
Translates to: RGNRTRGKDDICGHPGVQNSWYV*ATISCC
Trigger: GCAGCAAGAAATTGTTGCCAAAACGTACCAGCTGTT...CTGGACCCCTGGATGCCCACAAATGTCATCTTTCCCTCTTGTTCTGTTCCCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAATGTCCTCTTTTTCTCGTCTGAAAAGTaGCAGTCCAGGAGCTGCATG +
Preference number: 5 (lower is better)
Translates to: LLAFSHGEGIPDIFNVLFFSSEK*QSRSCM
Trigger: CATGCAGCTCCTGGACTGCAACTTTTCAGACGAGAA...AAAGAGGACATTGAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTTTCAGGACTTCATCTTaGAATGCCCCCGTGTTACCC +
Preference number: 5 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLFRTSS*NAPVLP
Trigger: GGGTAACACGGGGGCATTCAAAGATGAAGTCCTGAA...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAATTCAGGACTTCATCTTaGAATGCCCCCGTGTTACCC +
Preference number: 5 (lower is better)
Translates to: VLFACQLGHSCHQHHGEQFRTSS*NAPVLP
Trigger: GGGTAACACGGGGGCATTCAAAGATGAAGTCCTGAA...TTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTGCTGTTTCTGGAGTCTaGCTGATGCGCTGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: LKNAAELSNACTFFCQELAVSGV*LMRWLV
Trigger: CACCAGCCAGCGCATCAGCAAGACTCCAGAAACAGC...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGTTCATCTGTTCCACATaGCCATGGCCAGCCACATGC +
Preference number: 5 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQFICST*PWPATC
Trigger: GCATGTGGCTGGCCATGGCAATGTGGAACAGATGAA...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CTCCCAAGGCTCAGTGATCATTGGAAGAGGACCTGGAGAGACGGTGAGAGACAGATAGATCTCATACCATaGTCCTTTCTTCTGGTAGAG +
Preference number: 5 (lower is better)
Translates to: LPRLSDHWKRTWRDGERQIDLIP*SFLLVE
Trigger: CTCTACCAGAAGAAAGGACAATGGTATGAGATCTAT...CTGTCTCTCACCGTCTCTCCAGGTCCTCTTCCAATGATCACTGAGCCTTGGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156904.8
CDS-3UTR CAA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTTCATCATCGTGCACATaGCTGATGTCAGTGACGTCA +
Preference number: 5 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLSSSCT*LMSVTS
Trigger: TGACGTCACTGACATCAGCAATGTGCACGATGATGA...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATATCATCATCGTGCACATaGCTGATGTCAGTGACGTCA +
Preference number: 5 (lower is better)
Translates to: VQLATSCFVQEKMTLAVISSSCT*LMSVTS
Trigger: TGACGTCACTGACATCAGCAATGTGCACGATGATGA...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTACCCACTGGAAATTTTaGAGGGGTGTTTCACCCACC +
Preference number: 5 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLTHWKF*RGVSPT
Trigger: GGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGGT...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAATTTCATCTCCGTTCTaGAGGCACTGCCTCACCCAC +
Preference number: 5 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTISSPF*RHCLTH
Trigger: GTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAAT...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AAGCCTCCTTCCCCTGCATGTGTGTTAGATTCAGCCACAGTGCTTAGAAAACCATCAATGCCTCTGATCTaGACCCTGAACTTTCGGTCG +
Preference number: 5 (lower is better)
Translates to: KPPSPACVLDSATVLRKPSMPLI*TLNFRS
Trigger: CGACCGAAAGTTCAGGGTCAAGATCAGAGGCATTGA...TGGTTTTCTAAGCACTGTGGCTGAATCTAACACACATGCAGGGGAAGGAGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CAA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTGGCAAGTCTTTGATTTaGATGCCAAACTCCAGCCAC +
Preference number: 5 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLGKSLI*MPNSSH
Trigger: GTGGCTGGAGTTTGGCATCAAAATCAAAGACTTGCC...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGAGGCAAGTCTTTGATTTaGATGCCAAACTCCAGCCAC +
Preference number: 5 (lower is better)
Translates to: PLCLSAGAFLSSASWRTRGKSLI*MPNSSH
Trigger: GTGGCTGGAGTTTGGCATCAAAATCAAAGACTTGCC...TCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp TATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCAGTCTCTGCAGAAGCCTaGCTGGACAGTGATGGGGTT +
Preference number: 5 (lower is better)
Translates to: YIQCPLCLSAGAFLSSASVSAEA*LDSDGV
Trigger: AACCCCATCACTGTCCAGCAAGGCTTCTGCAGAGAC...TGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGTGAGCTTGTCAGCATaGAAGCTGCCCTGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRVSLSA*KLPCSS
Trigger: AGAGGAGCAGGGCAGCTTCAATGCTGACAAGCTCAC...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTAGAAACACCCTTGACATTGAGTTCTCCTaGTCAGGATTGGTTGCGGAT +
Preference number: 5 (lower is better)
Translates to: LTCIPCSVGTEGMLRNTLDIEFS*SGLVAD
Trigger: ATCCGCAACCAATCCTGACAAGGAGAACTCAATGTC...AAGGGTGTTTCTAAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp ATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGTTGGAGGCCATCACTTaGCATTTCTCGATCACCAGG +
Preference number: 5 (lower is better)
Translates to: IQCPLCLSAGAFLSSASWLEAIT*HFSITR
Trigger: CCTGGTGATCGAGAAATGCAAAGTGATGGCCTCCAA...CCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGCACAGGGGCTTCTTCTaGGAGGCCATCACTTTGCAT +
Preference number: 5 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQHRGFF*EAITLH
Trigger: ATGCAAAGTGATGGCCTCCAAGAAGAAGCCCCTGTG...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGTTACCCACTGTGCTTaGCTGAATTTGAGCGATCGT +
Preference number: 5 (lower is better)
Translates to: VQLATSCFVQEKMTLAVIVTHCA*LNLSDR
Trigger: ACGATCGCTCAAATTCAGCAAAGCACAGTGGGTAAC...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTTGCACAGTCCATCCTTaGTCTCTGCAGACTTCGATC +
Preference number: 5 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLCTVHP*SLQTSI
Trigger: GATCGAAGTCTGCAGAGACAAAGGATGGACTGTGCA...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS GCA 90 bp CTTCAGGCTTTCATATCGAAAATGCCAGAGCAATTCTTTGTCCTCTaGTGTGAGGGGGTTAAGTGGATCTGTGGCTATGATCGCCTCCAA +
Preference number: 5 (lower is better)
Translates to: LQAFISKMPEQFFVL*CEGVKWICGYDRLQ
Trigger: TTGGAGGCGATCATAGCCACAGATCCACTTAACCCCCTCACAGCAGAGGACAAAGAATTGCTCTGGCATTTTCGATATGAAAGCCTGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGATTCATCTGTTCCACATaGCCATGGCCAGCCACATGC +
Preference number: 5 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRFICST*PWPATC
Trigger: GCATGTGGCTGGCCATGGCAATGTGGAACAGATGAA...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp ACAAGATGTAGGAACCAGTTAAACTGCACAGTCCATCCTTTGTCTCTGCAGACTTTCATCTGTTCCACATaGCCATGGCCAGCCACATGC +
Preference number: 5 (lower is better)
Translates to: TRCRNQLNCTVHPLSLQTFICST*PWPATC
Trigger: GCATGTGGCTGGCCATGGCAATGTGGAACAGATGAA...AGTCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTGGTTCCTACATCTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTTCATCATCGTGCACATaGCTGATGTCAGTGACGTCA +
Preference number: 5 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLSSSCT*LMSVTS
Trigger: TGACGTCACTGACATCAGCAATGTGCACGATGATGA...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAATTCTTCTTGGCCATCTaGGTGAAGAAGCTCTGGAGG +
Preference number: 5 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKFFLAI*VKKLWR
Trigger: CCTCCAGAGCTTCTTCACCAAGATGGCCAAGAAGAA...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAACCCACTGGAAATTTTaGAGGGGTGTTTCACCCACC +
Preference number: 5 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKTHWKF*RGVSPT
Trigger: GGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGGT...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp ATCCCGGATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATACCCACTGGAAATTTTaGAGGGGTGTTTCACCCACC +
Preference number: 5 (lower is better)
Translates to: IPDIFNVLFACQLGHSCHTHWKF*RGVSPT
Trigger: GGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGGT...ATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATATCCGGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAATTTCATCTCCGTTCTaGAGGCACTGCCTCACCCAC +
Preference number: 5 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRISSPF*RHCLTH
Trigger: GTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAAT...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTGTTGCGGATGTGAGCTaGTCAGCATTGAAGCTGCCC +
Preference number: 5 (lower is better)
Translates to: LKNAAELSNACTFFCQELVADVS*SALKLP
Trigger: GGGCAGCTTCAATGCTGACAAGCTCACATCCGCAAC...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CCAGTTAAACTGCACAGTCCATCCTTTGTCTCTGCAGACTTCGATCTGATCAAGTTCTCCTTGTCAGGATaGGTTGCGGATGTGAGCTTG +
Preference number: 5 (lower is better)
Translates to: PVKLHSPSFVSADFDLIKFSLSG*VADVSL
Trigger: CAAGCTCACATCCGCAACCAATCCTGACAAGGAGAA...CTTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGTTCTCCTTGTCAGGATaGGTTGCGGATGTGAGCTTG +
Preference number: 5 (lower is better)
Translates to: AELSNACTFFCQELREHKFSLSG*VADVSL
Trigger: CAAGCTCACATCCGCAACCAATCCTGACAAGGAGAA...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTGACATTGAGTTCTCCTaGTCAGGATTGGTTGCGGAT +
Preference number: 5 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLDIEFS*SGLVAD
Trigger: ATCCGCAACCAATCCTGACAAGGAGAACTCAATGTC...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGATGATCAAGACATTGAGTTCTCCTaGTCAGGATTGGTTGCGGAT +
Preference number: 5 (lower is better)
Translates to: ACQLGHSCHQHHGEQDDQDIEFS*SGLVAD
Trigger: ATCCGCAACCAATCCTGACAAGGAGAACTCAATGTC...TTGATCATCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp CTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGATAACGTCCAAAGCACTTaGATCCCAGATCTCCCTTCT +
Preference number: 5 (lower is better)
Translates to: LFACQLGHSCHQHHGEQDNVQST*IPDLPS
Trigger: AGAAGGGAGATCTGGGATCAAAGTGCTTTGGACGTT...ATCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAATTCTCGTCTGAAAAGTaGCAGTCCAGGAGCTGCATG +
Preference number: 5 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKFSSEK*QSRSCM
Trigger: CATGCAGCTCCTGGACTGCAACTTTTCAGACGAGAA...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTACACAGGGGCTTCTTCTaGGAGGCCATCACTTTGCAT +
Preference number: 5 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVHRGFF*EAITLH
Trigger: ATGCAAAGTGATGGCCTCCAAGAAGAAGCCCCTGTG...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGACACAGGGGCTTCTTCTaGGAGGCCATCACTTTGCAT +
Preference number: 5 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRHRGFF*EAITLH
Trigger: ATGCAAAGTGATGGCCTCCAAGAAGAAGCCCCTGTG...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAATTCCAATGGTTTCGTaGGATAGGACTGTGGGATCA +
Preference number: 5 (lower is better)
Translates to: VQLATSCFVQEKMTLAVIIPMVS*DRTVGS
Trigger: TGATCCCACAGTCCTATCCAACGAAACCATTGGAAT...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTCAAGATCAACATGTCTaGGCGCAGATCATCACCATG +
Preference number: 5 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLQDQHV*AQIITM
Trigger: CATGGTGATGATCTGCGCCAAGACATGTTGATCTTG...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGTTCAGGACTTCATCTTaGAATGCCCCCGTGTTACCC +
Preference number: 5 (lower is better)
Translates to: AELSNACTFFCQELREHKFRTSS*NAPVLP
Trigger: GGGTAACACGGGGGCATTCAAAGATGAAGTCCTGAA...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGTGCACAGTCCATCCTTaGTCTCTGCAGACTTCGATC +
Preference number: 5 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQCTVHP*SLQTSI
Trigger: GATCGAAGTCTGCAGAGACAAAGGATGGACTGTGCA...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS TCA 90 bp GACTTTCTGAGATATTCATTAGGGACTTCTTCTTGGCCATCTTGGTaGAGAAGCTCTGGAGGATGGTACCAGGAGTATCATCTGCGGAGA +
Preference number: 5 (lower is better)
Translates to: DFLRYSLGTSSWPSW*RSSGGWYQEYHLRR
Trigger: TCTCCGCAGATGATACTCCTGGTACCATCCTCCAGAGCTTCTTCACCAAGATGGCCAAGAAGAAGTCCCTAATGAATATCTCAGAAAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 90 bp CATCCTTTACAATCTCGATCATTCCTATTTTGTCACCAGTTGAGATaGAACCGTAAGGCAGAAGGCACAGGTCCAGAGATTCAGTCTCCC +
Preference number: 5 (lower is better)
Translates to: HPLQSRSFLFCHQLR*NRKAEGTGPEIQSP
Trigger: GGGAGACTGAATCTCTGGACCTGTGCCTTCTGCCTTACGGTTGCATCTCAACTGGTGACAAAATAGGAATGATCGAGATTGTAAAGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 90 bp ATATTCATTAGGGACTTCTTCTTGGCCATCTTGGTGAAGAAGCTCTaGAGGATGGTACCAGGAGTATCATCTGCGGAGACCTTGATGGTT +
Preference number: 5 (lower is better)
Translates to: IFIRDFFLAILVKKL*RMVPGVSSAETLMV
Trigger: AACCATCAAGGTCTCCGCAGATGATACTCCTGGTACCATCCTCCAGAGCTTCTTCACCAAGATGGCCAAGAAGAAGTCCCTAATGAATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 90 bp AAAATGCCAGAGCAATTCTTTGTCCTCTGCTGTGAGGGGGTTAAGTaGATCTGTGGCTATGATCGCCTCCAATTGCTTTCGAAGCTGATT +
Preference number: 5 (lower is better)
Translates to: KMPEQFFVLCCEGVK*ICGYDRLQLLSKLI
Trigger: AATCAGCTTCGAAAGCAATTGGAGGCGATCATAGCCACAGATCCACTTAACCCCCTCACAGCAGAGGACAAAGAATTGCTCTGGCATTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 90 bp CCCCCGTGTTACCCACTGTGCTTTGCTGAATTTGAGCGATCGTTGTaGCATCCTTTACAATCTCGATCATTCCTATTTTGTCACCAGTTG +
Preference number: 5 (lower is better)
Translates to: PPCYPLCFAEFERSL*HPLQSRSFLFCHQL
Trigger: CAACTGGTGACAAAATAGGAATGATCGAGATTGTAAAGGATGCCACAACGATCGCTCAAATTCAGCAAAGCACAGTGGGTAACACGGGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGATGATCAACAGGTTTTCATCATCGTGCACATaGCTGATGTCAGTGACGTCA +
Preference number: 5 (lower is better)
Translates to: SWGIPVISIMENKMINRFSSSCT*LMSVTS
Trigger: TGACGTCACTGACATCAGCAATGTGCACGATGATGA...AAACCTGTTGATCATCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp GTATTCTATGAGCTAACTTGCATTCCTTGCTCTGTGGGCACTGAGGGGATGCTTTGTTGGCAATCTTTTTaGACAGGTAGTCTGGGAGAG +
Preference number: 5 (lower is better)
Translates to: VFYELTCIPCSVGTEGMLCWQSF*TGSLGE
Trigger: CTCTCCCAGACTACCTGTCAAAAAAGATTGCCAACA...AAGCATCCCCTCAGTGCCCACAGAGCAAGGAATGCAAGTTAGCTCATAGAATAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGATTCTTCTTGGCCATCTaGGTGAAGAAGCTCTGGAGG +
Preference number: 5 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRFFLAI*VKKLWR
Trigger: CCTCCAGAGCTTCTTCACCAAGATGGCCAAGAAGAA...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGATCAATGCCTCTGATCTaGACCCTGAACTTTCGGTCG +
Preference number: 5 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRSMPLI*TLNFRS
Trigger: CGACCGAAAGTTCAGGGTCAAGATCAGAGGCATTGA...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTCCTTTGGCAGAGGACTaGTTGCCCGTGCTGGATGTT +
Preference number: 5 (lower is better)
Translates to: EQRSLALNINQTISNANIPLAED*LPVLDV
Trigger: AACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGG...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAGGCAAGTCTTTGATTTaGATGCCAAACTCCAGCCAC +
Preference number: 5 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTGKSLI*MPNSSH
Trigger: GTGGCTGGAGTTTGGCATCAAAATCAAAGACTTGCC...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGGGCAAGTCTTTGATTTaGATGCCAAACTCCAGCCAC +
Preference number: 5 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQGKSLI*MPNSSH
Trigger: GTGGCTGGAGTTTGGCATCAAAATCAAAGACTTGCC...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CTCCTCGCTTTTTCCCACGGTGAGGGCATCCCGGATATATTCAATGTCCTCTTTTTCAATAGAGCCCCTTaGGGCAAGTCTTTGATTTTG +
Preference number: 5 (lower is better)
Translates to: LLAFSHGEGIPDIFNVLFFNRAP*GKSLIL
Trigger: CAAAATCAAAGACTTGCCCAAAGGGGCTCTATTGAA...AAAGAGGACATTGAATATATCCGGGATGCCCTCACCGTGGGAAAAAGCGAGGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTGTCTCTGCAGAAGCCTaGCTGGACAGTGATGGGGTT +
Preference number: 5 (lower is better)
Translates to: EQRSLALNINQTISNANIVSAEA*LDSDGV
Trigger: AACCCCATCACTGTCCAGCAAGGCTTCTGCAGAGAC...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTGTTGCGGATGTGAGCTaGTCAGCATTGAAGCTGCCC +
Preference number: 5 (lower is better)
Translates to: EQRSLALNINQTISNANIVADVS*SALKLP
Trigger: GGGCAGCTTCAATGCTGACAAGCTCACATCCGCAAC...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGATTCTCCTTGTCAGGATaGGTTGCGGATGTGAGCTTG +
Preference number: 5 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRFSLSG*VADVSL
Trigger: CAAGCTCACATCCGCAACCAATCCTGACAAGGAGAA...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAGACATTGAGTTCTCCTaGTCAGGATTGGTTGCGGAT +
Preference number: 5 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKDIEFS*SGLVAD
Trigger: ATCCGCAACCAATCCTGACAAGGAGAACTCAATGTC...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAATATGATCGCCTCCAATaGCTTTCGAAGCTGATTGGG +
Preference number: 5 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKYDRLQ*LSKLIG
Trigger: CCCAATCAGCTTCGAAAGCAATTGGAGGCGATCATA...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CCAAATAAGCCTCCTTCCCCTGCATGTGTGTTAGATTCAGCCACAGTGCTTAGAAACAGCTGGTACGTTTaGGCAACAATTTCTTGCTGC +
Preference number: 5 (lower is better)
Translates to: PNKPPSPACVLDSATVLRNSWYV*ATISCC
Trigger: GCAGCAAGAAATTGTTGCCAAAACGTACCAGCTGTT...TCTAAGCACTGTGGCTGAATCTAACACACATGCAGGGGAAGGAGGCTTATTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CAA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAAACGTCCAAAGCACTTaGATCCCAGATCTCCCTTCT +
Preference number: 5 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKNVQST*IPDLPS
Trigger: AGAAGGGAGATCTGGGATCAAAGTGCTTTGGACGTT...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp ATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGATTCCAATGGTTTCGTaGGATAGGACTGTGGGATCA +
Preference number: 5 (lower is better)
Translates to: IQCPLCLSAGAFLSSASWIPMVS*DRTVGS
Trigger: TGATCCCACAGTCCTATCCAACGAAACCATTGGAAT...CCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAACAAGATCAACATGTCTaGGCGCAGATCATCACCATG +
Preference number: 5 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKQDQHV*AQIITM
Trigger: CATGGTGATGATCTGCGCCAAGACATGTTGATCTTG...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACACAAGATCAACATGTCTaGGCGCAGATCATCACCATG +
Preference number: 5 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTQDQHV*AQIITM
Trigger: CATGGTGATGATCTGCGCCAAGACATGTTGATCTTG...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAGTTACCCACTGTGCTTaGCTGAATTTGAGCGATCGT +
Preference number: 5 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTVTHCA*LNLSDR
Trigger: ACGATCGCTCAAATTCAGCAAAGCACAGTGGGTAAC...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAGGCACTCTCTCTTTATaGATGCCCAGGAAACTCTTG +
Preference number: 5 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTGTLSL*MPRKLL
Trigger: CAAGAGTTTCCTGGGCATCAATAAAGAGAGAGTGCC...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGATGCACAGTCCATCCTTaGTCTCTGCAGACTTCGATC +
Preference number: 5 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRCTVHP*SLQTSI
Trigger: GATCGAAGTCTGCAGAGACAAAGGATGGACTGTGCA...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS TCA 90 bp CAAACAAGAAGTCTGGGGTTAGGACGAAGGGCACTCTCTCTTTATTaGTGCCCAGGAAACTCTTGTAATTCCCAAGAATGTGTCCGAAGT +
Preference number: 5 (lower is better)
Translates to: QTRSLGLGRRALSLY*CPGNSCNSQECVRS
Trigger: ACTTCGGACACATTCTTGGGAATTACAAGAGTTTCCTGGGCATCAATAAAGAGAGAGTGCCCTTCGTCCTAACCCCAGACTTCTTGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGTGTTGGCAATCTTTTTaGACAGGTAGTCTGGGAGAG +
Preference number: 5 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQCWQSF*TGSLGE
Trigger: CTCTCCCAGACTACCTGTCAAAAAAGATTGCCAACA...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CCAGTTAAACTGCACAGTCCATCCTTTGTCTCTGCAGACTTCGATCTGATCAAGTGTTGGCAATCTTTTTaGACAGGTAGTCTGGGAGAG +
Preference number: 5 (lower is better)
Translates to: PVKLHSPSFVSADFDLIKCWQSF*TGSLGE
Trigger: CTCTCCCAGACTACCTGTCAAAAAAGATTGCCAACA...CTTGATCAGATCGAAGTCTGCAGAGACAAAGGATGGACTGTGCAGTTTAACTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp ATTACATTCATAGAGAGAAGCACAGTTTCAGCACAGGGCATGGCCTGTACAGGAATTAGGGACTTCTTCTaGGCCATCTTGGTGAAGAAG +
Preference number: 5 (lower is better)
Translates to: ITFIERSTVSAQGMACTGIRDFF*AILVKK
Trigger: CTTCTTCACCAAGATGGCCAAGAAGAAGTCCCTAAT...TCCTGTACAGGCCATGCCCTGTGCTGAAACTGTGCTTCTCTCTATGAATGTAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CAA 90 bp ATCCCGGATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATATTAGGGACTTCTTCTaGGCCATCTTGGTGAAGAAG +
Preference number: 5 (lower is better)
Translates to: IPDIFNVLFACQLGHSCHIRDFF*AILVKK
Trigger: CTTCTTCACCAAGATGGCCAAGAAGAAGTCCCTAAT...ATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATATCCGGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAATTAGGGACTTCTTCTaGGCCATCTTGGTGAAGAAG +
Preference number: 5 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTIRDFF*AILVKK
Trigger: CTTCTTCACCAAGATGGCCAAGAAGAAGTCCCTAAT...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAAACCCACTGGAAATTTTaGAGGGGTGTTTCACCCACC +
Preference number: 5 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKTHWKF*RGVSPT
Trigger: GGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGGT...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACACCTTTGGGCAAGTCTTaGATTTTGATGCCAAACTCC +
Preference number: 5 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTPLGKS*ILMPNS
Trigger: GGAGTTTGGCATCAAAATCAAAGACTTGCCCAAAGG...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGCCCTGCTCCTCTGCCTaGCCAGATATCTGCCACATG +
Preference number: 5 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQPCSSA*PDICHM
Trigger: CATGTGGCAGATATCTGGCAAGGCAGAGGAGCAGGG...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAGACATTGAGTTCTCCTaGTCAGGATTGGTTGCGGAT +
Preference number: 5 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVDIEFS*SGLVAD
Trigger: ATCCGCAACCAATCCTGACAAGGAGAACTCAATGTC...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp TTCGATCTGATCAAGGAAATATTTCTTAGCGTCCTCCTCGCTTTTTCCCACGGTTATGATCGCCTCCAATaGCTTTCGAAGCTGATTGGG +
Preference number: 5 (lower is better)
Translates to: FDLIKEIFLSVLLAFSHGYDRLQ*LSKLIG
Trigger: CCCAATCAGCTTCGAAAGCAATTGGAGGCGATCATA...ACCGTGGGAAAAAGCGAGGAGGACGCTAAGAAATATTTCCTTGATCAGATCGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp CTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAAATTGGAGGCCATCACTTaGCATTTCTCGATCACCAGG +
Preference number: 5 (lower is better)
Translates to: LCAGEDDTGCNRLFALGKLEAIT*HFSITR
Trigger: CCTGGTGATCGAGAAATGCAAAGTGATGGCCTCCAA...TTTACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTTTGGAGGCCATCACTTaGCATTTCTCGATCACCAGG +
Preference number: 5 (lower is better)
Translates to: LKNAAELSNACTFFCQELLEAIT*HFSITR
Trigger: CCTGGTGATCGAGAAATGCAAAGTGATGGCCTCCAA...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAAATTCCAATGGTTTCGTaGGATAGGACTGTGGGATCA +
Preference number: 5 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKIPMVS*DRTVGS
Trigger: TGATCCCACAGTCCTATCCAACGAAACCATTGGAAT...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGACAAGATCAACATGTCTaGGCGCAGATCATCACCATG +
Preference number: 5 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRQDQHV*AQIITM
Trigger: CATGGTGATGATCTGCGCCAAGACATGTTGATCTTG...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp ATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATCAAGATCAACATGTCTaGGCGCAGATCATCACCATG +
Preference number: 5 (lower is better)
Translates to: IFNVLFACQLGHSCHQHHQDQHV*AQIITM
Trigger: CATGGTGATGATCTGCGCCAAGACATGTTGATCTTG...ATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGCTATTTTGTCACCAGTaGAGATGCAACCGTAAGGCA +
Preference number: 5 (lower is better)
Translates to: AELSNACTFFCQELREHKLFCHQ*RCNRKA
Trigger: TGCCTTACGGTTGCATCTCAACTGGTGACAAAATAG...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GTCCAGCTAGCGACTTCCTGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATATCGATCATTCCTATTTaGTCACCAGTTGAGATGCAA +
Preference number: 5 (lower is better)
Translates to: VQLATSCFVQEKMTLAVISIIPI*SPVEMQ
Trigger: TTGCATCTCAACTGGTGACAAAATAGGAATGATCGA...TATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCAGGAAGTCGCTAGCTGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp ATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCGTTACCCACTGTGCTTaGCTGAATTTGAGCGATCGT +
Preference number: 5 (lower is better)
Translates to: IYSMSSLLVSWGIPVISIVTHCA*LNLSDR
Trigger: ACGATCGCTCAAATTCAGCAAAGCACAGTGGGTAAC...GATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp ATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGCACTCTCTCTTTATaGATGCCCAGGAAACTCTTG +
Preference number: 5 (lower is better)
Translates to: IFNVLFACQLGHSCHQHHGTLSL*MPRKLL
Trigger: CAAGAGTTTCCTGGGCATCAATAAAGAGAGAGTGCC...ATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGGAGTGCTTTTCTCCTaGTTTGATGCCAAGAACAAG +
Preference number: 5 (lower is better)
Translates to: AELSNACTFFCQELREHKGVLFS*FDAKNK
Trigger: CTTGTTCTTGGCATCAAACAAGGAGAAAAGCACTCC...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTTTCTTCTTGGCCATCTaGGTGAAGAAGCTCTGGAGG +
Preference number: 5 (lower is better)
Translates to: EQRSLALNINQTISNANIFFLAI*VKKLWR
Trigger: CCTCCAGAGCTTCTTCACCAAGATGGCCAAGAAGAA...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAATTTCATCTCCGTTCTaGAGGCACTGCCTCACCCAC +
Preference number: 5 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIISSPF*RHCLTH
Trigger: GTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAAT...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACATTCAATAGAGCCCCTTaGGGCAAGTCTTTGATTTTG +
Preference number: 5 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTFNRAP*GKSLIL
Trigger: CAAAATCAAAGACTTGCCCAAAGGGGCTCTATTGAA...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGAGCCAAATTCAATAGAGCCCCTTaGGGCAAGTCTTTGATTTTG +
Preference number: 5 (lower is better)
Translates to: AMLAPFSAKSLENTRRAKFNRAP*GKSLIL
Trigger: CAAAATCAAAGACTTGCCCAAAGGGGCTCTATTGAA...TTTGGCTCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGTTCAATAGAGCCCCTTaGGGCAAGTCTTTGATTTTG +
Preference number: 5 (lower is better)
Translates to: AELSNACTFFCQELREHKFNRAP*GKSLIL
Trigger: CAAAATCAAAGACTTGCCCAAAGGGGCTCTATTGAA...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGGTCTCTGCAGAAGCCTaGCTGGACAGTGATGGGGTT +
Preference number: 5 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQVSAEA*LDSDGV
Trigger: AACCCCATCACTGTCCAGCAAGGCTTCTGCAGAGAC...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGGTTGCGGATGTGAGCTaGTCAGCATTGAAGCTGCCC +
Preference number: 5 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQVADVS*SALKLP
Trigger: GGGCAGCTTCAATGCTGACAAGCTCACATCCGCAAC...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp TATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCAGGATGGAAATGGACATaGAGTTCTCCTTGTCAGGAT +
Preference number: 5 (lower is better)
Translates to: YIQCPLCLSAGAFLSSASGWKWT*SSPCQD
Trigger: ATCCTGACAAGGAGAACTCAATGTCCATTTCCATCC...TGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp GCGGAGTGCTTTTCTCCTTGTTTGATGCCAAGAACAAGATGTAGGAACCAGTTAAACAGCTGGTACGTTTaGGCAACAATTTCTTGCTGC +
Preference number: 5 (lower is better)
Translates to: AECFSPCLMPRTRCRNQLNSWYV*ATISCC
Trigger: GCAGCAAGAAATTGTTGCCAAAACGTACCAGCTGTT...TAACTGGTTCCTACATCTTGTTCTTGGCATCAAACAAGGAGAAAAGCACTCCGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAATTCCAATGGTTTCGTaGGATAGGACTGTGGGATCA +
Preference number: 5 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVIPMVS*DRTVGS
Trigger: TGATCCCACAGTCCTATCCAACGAAACCATTGGAAT...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGACTATTTTGTCACCAGTaGAGATGCAACCGTAAGGCA +
Preference number: 5 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRLFCHQ*RCNRKA
Trigger: TGCCTTACGGTTGCATCTCAACTGGTGACAAAATAG...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp ATATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCCTATTTTGTCACCAGTaGAGATGCAACCGTAAGGCA +
Preference number: 5 (lower is better)
Translates to: IYSMSSLLVSWGIPVISILFCHQ*RCNRKA
Trigger: TGCCTTACGGTTGCATCTCAACTGGTGACAAAATAG...GATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp CCAAATAAGCCTCCTTCCCCTGCATGTGTGTTAGATTCAGCCACAGTGCTTAGATCGATCATTCCTATTTaGTCACCAGTTGAGATGCAA +
Preference number: 5 (lower is better)
Translates to: PNKPPSPACVLDSATVLRSIIPI*SPVEMQ
Trigger: TTGCATCTCAACTGGTGACAAAATAGGAATGATCGA...TCTAAGCACTGTGGCTGAATCTAACACACATGCAGGGGAAGGAGGCTTATTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CAA 90 bp GCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATGGAGAACAAGATGATCAATCGATCATTCCTATTTaGTCACCAGTTGAGATGCAA +
Preference number: 5 (lower is better)
Translates to: ACQLGHSCHQHHGEQDDQSIIPI*SPVEMQ
Trigger: TTGCATCTCAACTGGTGACAAAATAGGAATGATCGA...TTGATCATCTTGTTCTCCATGATGCTGATGACAGGAATGCCCCAGCTGACAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp GATTCAGCCACAGTGCTTAGAAAACCATACCCAGGCTCATTCACACTAATGAAAGTTACCCACTGTGCTTaGCTGAATTTGAGCGATCGT +
Preference number: 5 (lower is better)
Translates to: DSATVLRKPYPGSFTLMKVTHCA*LNLSDR
Trigger: ACGATCGCTCAAATTCAGCAAAGCACAGTGGGTAAC...TTTCATTAGTGTGAATGAGCCTGGGTATGGTTTTCTAAGCACTGTGGCTGAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CAA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTTGCACAGTCCATCCTTaGTCTCTGCAGACTTCGATC +
Preference number: 5 (lower is better)
Translates to: EQRSLALNINQTISNANICTVHP*SLQTSI
Trigger: GATCGAAGTCTGCAGAGACAAAGGATGGACTGTGCA...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAGGAGTGCTTTTCTCCTaGTTTGATGCCAAGAACAAG +
Preference number: 5 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVGVLFS*FDAKNK
Trigger: CTTGTTCTTGGCATCAAACAAGGAGAAAAGCACTCC...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTTGTTGGCAATCTTTTTaGACAGGTAGTCTGGGAGAG +
Preference number: 5 (lower is better)
Translates to: LKNAAELSNACTFFCQELCWQSF*TGSLGE
Trigger: CTCTCCCAGACTACCTGTCAAAAAAGATTGCCAACA...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCCTTTGGCAGAGGACTaGTTGCCCGTGCTGGATGTT +
Preference number: 5 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVPLAED*LPVLDV
Trigger: AACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGG...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp TCTGCAGACTTCGATCTGATCAAGGAAATATTTCTTAGCGTCCTCCTCGCTTTTCCTTTGGGCAAGTCTTaGATTTTGATGCCAAACTCC +
Preference number: 5 (lower is better)
Translates to: SADFDLIKEIFLSVLLAFPLGKS*ILMPNS
Trigger: GGAGTTTGGCATCAAAATCAAAGACTTGCCCAAAGG...AAAAGCGAGGAGGACGCTAAGAAATATTTCCTTGATCAGATCGAAGTCTGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCGTGAGCTTGTCAGCATaGAAGCTGCCCTGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVVSLSA*KLPCSS
Trigger: AGAGGAGCAGGGCAGCTTCAATGCTGACAAGCTCAC...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCGTTGCGGATGTGAGCTaGTCAGCATTGAAGCTGCCC +
Preference number: 5 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVVADVS*SALKLP
Trigger: GGGCAGCTTCAATGCTGACAAGCTCACATCCGCAAC...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTGGATGGAAATGGACATaGAGTTCTCCTTGTCAGGAT +
Preference number: 5 (lower is better)
Translates to: LKNAAELSNACTFFCQELGWKWT*SSPCQD
Trigger: ATCCTGACAAGGAGAACTCAATGTCCATTTCCATCC...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAACAGCTGGTACGTTTaGGCAACAATTTCTTGCTGC +
Preference number: 5 (lower is better)
Translates to: LKNAAELSNACTFFCQELNSWYV*ATISCC
Trigger: GCAGCAAGAAATTGTTGCCAAAACGTACCAGCTGTT...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATATTCTCGTCTGAAAAGTaGCAGTCCAGGAGCTGCATG +
Preference number: 5 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIFSSEK*QSRSCM
Trigger: CATGCAGCTCCTGGACTGCAACTTTTCAGACGAGAA...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGTCGATCATTCCTATTTaGTCACCAGTTGAGATGCAA +
Preference number: 5 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQSIIPI*SPVEMQ
Trigger: TTGCATCTCAACTGGTGACAAAATAGGAATGATCGA...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTGGCACTCTCTCTTTATaGATGCCCAGGAAACTCTTG +
Preference number: 5 (lower is better)
Translates to: EQRSLALNINQTISNANIGTLSL*MPRKLL
Trigger: CAAGAGTTTCCTGGGCATCAATAAAGAGAGAGTGCC...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGTGCTTTTCTCCTTGTTaGATGCCAAGAACAAGATGT +
Preference number: 5 (lower is better)
Translates to: AELSNACTFFCQELREHKCFSPC*MPRTRC
Trigger: ACATCTTGTTCTTGGCATCAAACAAGGAGAAAAGCA...CTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAGATGTCTTTGAAGAGTCCACAAGTCCAGGAAGAAGTACAGGAAGTGTTGCAGTGCTTTTCTCCTTGTTaGATGCCAAGAACAAGATGT +
Preference number: 5 (lower is better)
Translates to: EMSLKSPQVQEEVQEVLQCFSPC*MPRTRC
Trigger: ACATCTTGTTCTTGGCATCAAACAAGGAGAAAAGCA...CTGCAACACTTCCTGTACTTCTTCCTGGACTTGTGGACTCTTCAAAGACATCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACATGCTTTTCTCCTTGTTaGATGCCAAGAACAAGATGT +
Preference number: 5 (lower is better)
Translates to: QQSLAMLAPFSAKSLENTCFSPC*MPRTRC
Trigger: ACATCTTGTTCTTGGCATCAAACAAGGAGAAAAGCA...TGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCTTCATCTGTTCCACATaGCCATGGCCAGCCACATGC +
Preference number: 5 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVFICST*PWPATC
Trigger: GCATGTGGCTGGCCATGGCAATGTGGAACAGATGAA...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp ATATTCAATGTCCTCTTTGCTTGTCAGCTGGGGCATTCCTGTCATCAGCATCATATAGATCTCATACCATaGTCCTTTCTTCTGGTAGAG +
Preference number: 5 (lower is better)
Translates to: IFNVLFACQLGHSCHQHHIDLIP*SFLLVE
Trigger: CTCTACCAGAAGAAAGGACAATGGTATGAGATCTAT...ATGATGCTGATGACAGGAATGCCCCAGCTGACAAGCAAAGAGGACATTGAATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217915.2
CDS-3UTR CAA 90 bp TGCTTTGTGCAGGAGAAGATGACACTGGCTGTAATAGGTTATTCGCTCTTGGTAATAGATCTCATACCATaGTCCTTTCTTCTGGTAGAG +
Preference number: 5 (lower is better)
Translates to: CFVQEKMTLAVIGYSLLVIDLIP*SFLLVE
Trigger: CTCTACCAGAAGAAAGGACAATGGTATGAGATCTAT...TACCAAGAGCGAATAACCTATTACAGCCAGTGTCATCTTCTCCTGCACAAAGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp TTAAAGAATGCAGCAGAGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTTTCAATAGAGCCCCTTaGGGCAAGTCTTTGATTTTG +
Preference number: 5 (lower is better)
Translates to: LKNAAELSNACTFFCQELFNRAP*GKSLIL
Trigger: CAAAATCAAAGACTTGCCCAAAGGGGCTCTATTGAA...AAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCTCTGCTGCATTCTTTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp ATTCAAATGAAAGGCAGAGTCTGTGTATGGTTCTTTAGAAGCCTAAGCTTGCGTGGATGGAAATGGACATaGAGTTCTCCTTGTCAGGAT +
Preference number: 5 (lower is better)
Translates to: IQMKGRVCVWFFRSLSLRGWKWT*SSPCQD
Trigger: ATCCTGACAAGGAGAACTCAATGTCCATTTCCATCC...ACGCAAGCTTAGGCTTCTAAAGAACCATACACAGACTCTGCCTTTCATTTGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053215.14
CDS-3UTR CAA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATATATGATCGCCTCCAATaGCTTTCGAAGCTGATTGGG +
Preference number: 5 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIYDRLQ*LSKLIG
Trigger: CCCAATCAGCTTCGAAAGCAATTGGAGGCGATCATA...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp GAACAGAGAAGCCTCGCACTGAATATTAACCAAACCATCAGTAATGCCAACATTAACAGCTGGTACGTTTaGGCAACAATTTCTTGCTGC +
Preference number: 5 (lower is better)
Translates to: EQRSLALNINQTISNANINSWYV*ATISCC
Trigger: GCAGCAAGAAATTGTTGCCAAAACGTACCAGCTGTT...AATGTTGGCATTACTGATGGTTTGGTTAATATTCAGTGCGAGGCTTCTCTGTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGCTTAGCAATGCTTGCACCTTTTTCTGCCAAGAGCTTAGAGAACACAAGGAGATCGATCATTCCTATTTaGTCACCAGTTGAGATGCAA +
Preference number: 5 (lower is better)
Translates to: SLAMLAPFSAKSLENTRRSIIPI*SPVEMQ
Trigger: TTGCATCTCAACTGGTGACAAAATAGGAATGATCGA...TCTCCTTGTGTTCTCTAAGCTCTTGGCAGAAAAAGGTGCAAGCATTGCTAAGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAGTTACCCACTGTGCTTaGCTGAATTTGAGCGATCGT +
Preference number: 5 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIVTHCA*LNLSDR
Trigger: ACGATCGCTCAAATTCAGCAAAGCACAGTGGGTAAC...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCACCCACTGGAAATTTTaGAGGGGTGTTTCACCCACC +
Preference number: 5 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVTHWKF*RGVSPT
Trigger: GGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGGT...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp CACACGAGAAAACAGGTATTGCCAGTTATTCTAACTAAAGGGCTTTCAGAGATAGGATGGAAATGGACATaGAGTTCTCCTTGTCAGGAT +
Preference number: 5 (lower is better)
Translates to: HTRKQVLPVILTKGLSEIGWKWT*SSPCQD
Trigger: ATCCTGACAAGGAGAACTCAATGTCCATTTCCATCC...TATCTCTGAAAGCCCTTTAGTTAGAATAACTGGCAATACCTGTTTTCTCGTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGAACGTCCAAAGCACTTaGATCCCAGATCTCCCTTCT +
Preference number: 5 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQNVQST*IPDLPS
Trigger: AGAAGGGAGATCTGGGATCAAAGTGCTTTGGACGTT...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGGGCACTCTCTCTTTATaGATGCCCAGGAAACTCTTG +
Preference number: 5 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQGTLSL*MPRKLL
Trigger: CAAGAGTTTCCTGGGCATCAATAAAGAGAGAGTGCC...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGATTAGGGACTTCTTCTaGGCCATCTTGGTGAAGAAG +
Preference number: 5 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQIRDFF*AILVKK
Trigger: CTTCTTCACCAAGATGGCCAAGAAGAAGTCCCTAAT...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCAACGTCCAAAGCACTTaGATCCCAGATCTCCCTTCT +
Preference number: 5 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVNVQST*IPDLPS
Trigger: AGAAGGGAGATCTGGGATCAAAGTGCTTTGGACGTT...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCTGTTGGCAATCTTTTTaGACAGGTAGTCTGGGAGAG +
Preference number: 5 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVCWQSF*TGSLGE
Trigger: CTCTCCCAGACTACCTGTCAAAAAAGATTGCCAACA...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCATTAGGGACTTCTTCTaGGCCATCTTGGTGAAGAAG +
Preference number: 5 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVIRDFF*AILVKK
Trigger: CTTCTTCACCAAGATGGCCAAGAAGAAGTCCCTAAT...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCCTTTGGGCAAGTCTTaGATTTTGATGCCAAACTCC +
Preference number: 5 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVPLGKS*ILMPNS
Trigger: GGAGTTTGGCATCAAAATCAAAGACTTGCCCAAAGG...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCTATTTTGTCACCAGTaGAGATGCAACCGTAAGGCA +
Preference number: 5 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVLFCHQ*RCNRKA
Trigger: TGCCTTACGGTTGCATCTCAACTGGTGACAAAATAG...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCGGAGTGCTTTTCTCCTaGTTTGATGCCAAGAACAAG +
Preference number: 5 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVGVLFS*FDAKNK
Trigger: CTTGTTCTTGGCATCAAACAAGGAGAAAAGCACTCC...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCCAGATAGATCTCATACCATaGTCCTTTCTTCTGGTAGAG +
Preference number: 5 (lower is better)
Translates to: RLSFSSHFEMSLKSPQVQIDLIP*SFLLVE
Trigger: CTCTACCAGAAGAAAGGACAATGGTATGAGATCTAT...CTGGACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS-3UTR CAA 90 bp AGTAGACTTTCTTTTTCAAGTCATTTTGAGATGTCTTTGAAGAGTCCACAAGTCATAGATCTCATACCATaGTCCTTTCTTCTGGTAGAG +
Preference number: 5 (lower is better)
Translates to: SRLSFSSHFEMSLKSPQVIDLIP*SFLLVE
Trigger: CTCTACCAGAAGAAAGGACAATGGTATGAGATCTAT...GACTTGTGGACTCTTCAAAGACATCTCAAAATGACTTGAAAAAGAAAGTCTACT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000220366.2
CDS TCA 72 bp GCAGCCACACTGGTCTCCAGTGCGCGCAGCCACACCTaGGCTTTCATCTGTTCCACATTGCCATGGCCAGCC +
Preference number: 6 (lower is better)
Translates to: AATLVSSARSHT*AFICSTLPWPA
Trigger: GGCTGGCCATGGCAATGTGGAACAGATGAAAGCTCAGGTGTGGCTGCGCGCACTGGAGACCAGTGTGGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 72 bp TCGGTGGTAGAACTCCGCAGCCACACTGGTCTCCAGTaGGCGCAGCCACACCTGAGCTTTCATCTGTTCCAC +
Preference number: 6 (lower is better)
Translates to: SVVELRSHTGLQ*AQPHLSFHLFH
Trigger: GTGGAACAGATGAAAGCTCAGGTGTGGCTGCGCGCACTGGAGACCAGTGTGGCTGCGGAGTTCTACCACCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp ATTGCCATGGCCAGCCACATGCAGCAGCGCTGTTTCTaGAGTCTTGCTGATGCGCTGGCTGGTGGGCAGTAC +
Preference number: 6 (lower is better)
Translates to: IAMASHMQQRCF*SLADALAGGQY
Trigger: GTACTGCCCACCAGCCAGCGCATCAGCAAGACTCCAGAAACAGCGCTGCTGCATGTGGCTGGCCATGGCAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp CTGATTGGGCATTTCAGCCCGAACCCTGTCTCCCTCTaGGTCAGGGGTGGGCCGGTGCTTAGGCAAAGCTAT +
Preference number: 6 (lower is better)
Translates to: LIGHFSPNPVSL*VRGGPVLRQSY
Trigger: ATAGCTTTGCCTAAGCACCGGCCCACCCCTGACCCAGAGGGAGACAGGGTTCGGGCTGAAATGCCCAATCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS TCA 72 bp CAGCCACATGCAGCAGCGCTGTTTCTGGAGTCTTGCTaGTGCGCTGGCTGGTGGGCAGTACGAACTCAATGG +
Preference number: 6 (lower is better)
Translates to: QPHAAALFLESC*CAGWWAVRTQW
Trigger: CCATTGAGTTCGTACTGCCCACCAGCCAGCGCATCAGCAAGACTCCAGAAACAGCGCTGCTGCATGTGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp TGCAGCAGCGCTGTTTCTGGAGTCTTGCTGATGCGCTaGCTGGTGGGCAGTACGAACTCAATGGGGATGAGC +
Preference number: 6 (lower is better)
Translates to: CSSAVSGVLLMR*LVGSTNSMGMS
Trigger: GCTCATCCCCATTGAGTTCGTACTGCCCACCAGCCAGCGCATCAGCAAGACTCCAGAAACAGCGCTGCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 72 bp GGGCTGGTTCTCCTTTGGCAGAGGACTTGTTGCCCGTaGTGGATGTTCGCTTCCACAAACACAGTGAGGTCG +
Preference number: 6 (lower is better)
Translates to: GLVLLWQRTCCP*WMFASTNTVRS
Trigger: CGACCTCACTGTGTTTGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp CCACGCTTCAGCAGGAATCTGGCCAGCGCACTGTCGTaGTACGGTTCAAATTTCACAGCCTGTACCAGCTGG +
Preference number: 6 (lower is better)
Translates to: PRFSRNLASALS*YGSNFTACTSW
Trigger: CCAGCTGGTACAGGCTGTGAAATTTGAACCGTACCACGACAGTGCGCTGGCCAGATTCCTGCTGAAGCGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp TGGAGGATGGTACCAGGAGTATCATCTGCGGAGACCTaGATGGTTTGGCTGGTGGTACCGCGGTGGATGACG +
Preference number: 6 (lower is better)
Translates to: WRMVPGVSSAET*MVWLVVPRWMT
Trigger: CGTCATCCACCGCGGTACCACCAGCCAAACCATCAAGGTCTCCGCAGATGATACTCCTGGTACCATCCTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp TACCTCTTCTGCGAAGGGCTTAGGGCTGGTTCTCCTTaGGCAGAGGACTTGTTGCCCGTGCTGGATGTTCGC +
Preference number: 6 (lower is better)
Translates to: YLFCEGLRAGSP*AEDLLPVLDVR
Trigger: GCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCCTAAGCCCTTCGCAGAAGAGGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp TTCTGCGAAGGGCTTAGGGCTGGTTCTCCTTTGGCAGAGGACTTGTaGCCCGTGCTGGATGTTCGCTTCCACAAACACAGTGAGGTCGGT +
Preference number: 6 (lower is better)
Translates to: FCEGLRAGSPLAEDL*PVLDVRFHKHSEVG
Trigger: ACCGACCTCACTGTGTTTGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCCTAAGCCCTTCGCAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp CTCTTCTGCGAAGGGCTTAGGGCTGGTTCTCCTTTGGCAGAGGACTaGTTGCCCGTGCTGGATGTTCGCTTCCACAAACACAGTGAGGTC +
Preference number: 6 (lower is better)
Translates to: LFCEGLRAGSPLAED*LPVLDVRFHKHSEV
Trigger: GACCTCACTGTGTTTGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCCTAAGCCCTTCGCAGAAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS TCA 72 bp GTTGCCCGTGCTGGATGTTCGCTTCCACAAACACAGTaGGGTCGGTGTTCCGAGGCAGGACAGGGATATCAA +
Preference number: 6 (lower is better)
Translates to: VARAGCSLPQTQ*GRCSEAGQGYQ
Trigger: TTGATATCCCTGTCCTGCCTCGGAACACCGACCTCACTGTGTTTGTGGAAGCGAACATCCAGCACGGGCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 72 bp GCTTTCATCTGTTCCACATTGCCATGGCCAGCCACATaGAGCAGCGCTGTTTCTGGAGTCTTGCTGATGCGC +
Preference number: 6 (lower is better)
Translates to: AFICSTLPWPAT*SSAVSGVLLMR
Trigger: GCGCATCAGCAAGACTCCAGAAACAGCGCTGCTGCATGTGGCTGGCCATGGCAATGTGGAACAGATGAAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 72 bp GAAGAAGCTCTGGAGGATGGTACCAGGAGTATCATCTaGGGAGACCTTGATGGTTTGGCTGGTGGTACCGCG +
Preference number: 6 (lower is better)
Translates to: EEALEDGTRSII*GDLDGLAGGTA
Trigger: CGCGGTACCACCAGCCAAACCATCAAGGTCTCCGCAGATGATACTCCTGGTACCATCCTCCAGAGCTTCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 72 bp GGCTTAGGGCTGGTTCTCCTTTGGCAGAGGACTTGTTaGCCGTGCTGGATGTTCGCTTCCACAAACACAGTG +
Preference number: 6 (lower is better)
Translates to: GLGLVLLWQRTC*PCWMFASTNTV
Trigger: CACTGTGTTTGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCCTAAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 72 bp GCCAAACTCCAGCCACACATTCCAGAGTACCTCTTCTaGGAAGGGCTTAGGGCTGGTTCTCCTTTGGCAGAG +
Preference number: 6 (lower is better)
Translates to: AKLQPHIPEYLF*EGLRAGSPLAE
Trigger: CTCTGCCAAAGGAGAACCAGCCCTAAGCCCTTCGCAGAAGAGGTACTCTGGAATGTGTGGCTGGAGTTTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 72 bp CCTTGGACTCGGAGCCTGGAGTCTCTGCAGAAGCCTTaGTGGACAGTGATGGGGTTTTGCAGCAGTAGATCT +
Preference number: 6 (lower is better)
Translates to: PWTRSLESLQKP*WTVMGFCSSRS
Trigger: AGATCTACTGCTGCAAAACCCCATCACTGTCCAGCAAGGCTTCTGCAGAGACTCCAGGCTCCGAGTCCAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 72 bp GTTGCGGATGTGAGCTTGTCAGCATTGAAGCTGCCCTaGTCCTCTGCCTTGCCAGATATCTGCCACATGTGG +
Preference number: 6 (lower is better)
Translates to: VADVSLSALKLP*SSALPDICHMW
Trigger: CCACATGTGGCAGATATCTGGCAAGGCAGAGGAGCAGGGCAGCTTCAATGCTGACAAGCTCACATCCGCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 72 bp AACATCTCAATCACATGGACCTGCTGTGTGAAGTCCTaGAACATGGCTGTGCCACAGCCTCGCAGGTACGCC +
Preference number: 6 (lower is better)
Translates to: NISITWTCCVKS*NMAVPQPRRYA
Trigger: GGCGTACCTGCGAGGCTGTGGCACAGCCATGTTGCAGGACTTCACACAGCAGGTCCATGTGATTGAGATGTT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp AAGGTCTCCTCAGAAGGTACGTGTCGCTGTACCACGTaGATCTGGCCAGGGCTCTTGTGCATCAACTTCCAG +
Preference number: 6 (lower is better)
Translates to: KVSSEGTCRCTT*IWPGLLCINFQ
Trigger: CTGGAAGTTGATGCACAAGAGCCCTGGCCAGATCCACGTGGTACAGCGACACGTACCTTCTGAGGAGACCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp CTGGTTCTCCTTTGGCAGAGGACTTGTTGCCCGTGCTaGATGTTCGCTTCCACAAACACAGTGAGGTCGGTG +
Preference number: 6 (lower is better)
Translates to: LVLLWQRTCCPC*MFASTNTVRSV
Trigger: CACCGACCTCACTGTGTTTGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGGAGAACCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp CCGTTCTTGAGGCACTGCCTCACCCACTGGAAATTTTaGAGGGGTGTTTCACCCACCAGGTACTCATCGCGG +
Preference number: 6 (lower is better)
Translates to: PFLRHCLTHWKF*RGVSPTRYSSR
Trigger: CCGCGATGAGTACCTGGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGGTGAGGCAGTGCCTCAAGAACGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp GGGCTTAGGGCTGGTTCTCCTTTGGCAGAGGACTTGTaGCCCGTGCTGGATGTTCGCTTCCACAAACACAGT +
Preference number: 6 (lower is better)
Translates to: GLRAGSPLAEDL*PVLDVRFHKHS
Trigger: ACTGTGTTTGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCCTAAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp GAAGGGCTTAGGGCTGGTTCTCCTTTGGCAGAGGACTaGTTGCCCGTGCTGGATGTTCGCTTCCACAAACAC +
Preference number: 6 (lower is better)
Translates to: EGLRAGSPLAED*LPVLDVRFHKH
Trigger: GTGTTTGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCCTAAGCCCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp GTACCAGGAGTATCATCTGCGGAGACCTTGATGGTTTaGCTGGTGGTACCGCGGTGGATGACGATGAAGATG +
Preference number: 6 (lower is better)
Translates to: VPGVSSAETLMV*LVVPRWMTMKM
Trigger: CATCTTCATCGTCATCCACCGCGGTACCACCAGCCAAACCATCAAGGTCTCCGCAGATGATACTCCTGGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp CCTCCAGGATCACAGCGAACCTCTGCTGATAGTGTCTaGACTGTGCGATCTCACTTCGCAGGAACCAGAACA +
Preference number: 6 (lower is better)
Translates to: PPGSQRTSADSV*TVRSHFAGTRT
Trigger: TGTTCTGGTTCCTGCGAAGTGAGATCGCACAGTCCAGACACTATCAGCAGAGGTTCGCTGTGATCCTGGAGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp GGTACCAGGAGTATCATCTGCGGAGACCTTGATGGTTaGGCTGGTGGTACCGCGGTGGATGACGATGAAGAT +
Preference number: 6 (lower is better)
Translates to: GTRSIICGDLDG*AGGTAVDDDED
Trigger: ATCTTCATCGTCATCCACCGCGGTACCACCAGCCAAACCATCAAGGTCTCCGCAGATGATACTCCTGGTACC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp GAGTTCTCCTTGTCAGGATTGGTTGCGGATGTGAGCTaGTCAGCATTGAAGCTGCCCTGCTCCTCTGCCTTG +
Preference number: 6 (lower is better)
Translates to: EFSLSGLVADVS*SALKLPCSSAL
Trigger: CAAGGCAGAGGAGCAGGGCAGCTTCAATGCTGACAAGCTCACATCCGCAACCAATCCTGACAAGGAGAACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp CTGGAGGATGGTACCAGGAGTATCATCTGCGGAGACCTTGATGGTTaGGCTGGTGGTACCGCGGTGGATGACGATGAAGATGCAGTTGTT +
Preference number: 6 (lower is better)
Translates to: LEDGTRSIICGDLDG*AGGTAVDDDEDAVV
Trigger: AACAACTGCATCTTCATCGTCATCCACCGCGGTACCACCAGCCAAACCATCAAGGTCTCCGCAGATGATACTCCTGGTACCATCCTCCAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp AAGAAGCTCTGGAGGATGGTACCAGGAGTATCATCTGCGGAGACCTaGATGGTTTGGCTGGTGGTACCGCGGTGGATGACGATGAAGATG +
Preference number: 6 (lower is better)
Translates to: KKLWRMVPGVSSAET*MVWLVVPRWMTMKM
Trigger: CATCTTCATCGTCATCCACCGCGGTACCACCAGCCAAACCATCAAGGTCTCCGCAGATGATACTCCTGGTACCATCCTCCAGAGCTTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp GGGTCTGGAGGCGTGTCGAGCACCAGGTGTATTTCATCTCCGTTCTaGAGGCACTGCCTCACCCACTGGAAATTTTTGAGGGGTGTTTCA +
Preference number: 6 (lower is better)
Translates to: GSGGVSSTRCISSPF*RHCLTHWKFLRGVS
Trigger: TGAAACACCCCTCAAAAATTTCCAGTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAATACACCTGGTGCTCGACACGCCTCCAGACCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp AGGTCGGTGTTCCGAGGCAGGACAGGGATATCAATGCCTCTGATCTaGACCCTGAACTTTCGGTCGCAGTCCCACAAAGACACTGTGAAC +
Preference number: 6 (lower is better)
Translates to: RSVFRGRTGISMPLI*TLNFRSQSHKDTVN
Trigger: GTTCACAGTGTCTTTGTGGGACTGCGACCGAAAGTTCAGGGTCAAGATCAGAGGCATTGATATCCCTGTCCTGCCTCGGAACACCGACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp ATTCCAGAGTACCTCTTCTGCGAAGGGCTTAGGGCTGGTTCTCCTTaGGCAGAGGACTTGTTGCCCGTGCTGGATGTTCGCTTCCACAAA +
Preference number: 6 (lower is better)
Translates to: IPEYLFCEGLRAGSP*AEDLLPVLDVRFHK
Trigger: TTTGTGGAAGCGAACATCCAGCACGGGCAACAAGTCCTCTGCCAAAGGAGAACCAGCCCTAAGCCCTTCGCAGAAGAGGTACTCTGGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp GAGTTCTCCTTGTCAGGATTGGTTGCGGATGTGAGCTTGTCAGCATaGAAGCTGCCCTGCTCCTCTGCCTTGCCAGATATCTGCCACATG +
Preference number: 6 (lower is better)
Translates to: EFSLSGLVADVSLSA*KLPCSSALPDICHM
Trigger: CATGTGGCAGATATCTGGCAAGGCAGAGGAGCAGGGCAGCTTCAATGCTGACAAGCTCACATCCGCAACCAATCCTGACAAGGAGAACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp TGCTGTGAGGGGGTTAAGTGGATCTGTGGCTATGATCGCCTCCAATaGCTTTCGAAGCTGATTGGGCATTTCAGCCCGAACCCTGTCTCC +
Preference number: 6 (lower is better)
Translates to: CCEGVKWICGYDRLQ*LSKLIGHFSPNPVS
Trigger: GGAGACAGGGTTCGGGCTGAAATGCCCAATCAGCTTCGAAAGCAATTGGAGGCGATCATAGCCACAGATCCACTTAACCCCCTCACAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS TCA 72 bp TCTGTGGCTATGATCGCCTCCAATTGCTTTCGAAGCTaGTTGGGCATTTCAGCCCGAACCCTGTCTCCCTCT +
Preference number: 6 (lower is better)
Translates to: SVAMIASNCFRS*LGISARTLSPS
Trigger: AGAGGGAGACAGGGTTCGGGCTGAAATGCCCAATCAGCTTCGAAAGCAATTGGAGGCGATCATAGCCACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 72 bp GAACTGCAATGGCCCGGACATTCTCGTCTGAAAAGTTaGAGTCCAGGAGCTGCATGGTTAAGCCAACGTCCA +
Preference number: 6 (lower is better)
Translates to: ELQWPGHSRLKS*SPGAAWLSQRP
Trigger: TGGACGTTGGCTTAACCATGCAGCTCCTGGACTGCAACTTTTCAGACGAGAATGTCCGGGCCATTGCAGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp GCGGAGACCTTGATGGTTTGGCTGGTGGTACCGCGGTaGATGACGATGAAGATGCAGTTGTTGGCAATCTTT +
Preference number: 6 (lower is better)
Translates to: AETLMVWLVVPR*MTMKMQLLAIF
Trigger: AAAGATTGCCAACAACTGCATCTTCATCGTCATCCACCGCGGTACCACCAGCCAAACCATCAAGGTCTCCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp AGGGACTTCTTCTTGGCCATCTTGGTGAAGAAGCTCTaGAGGATGGTACCAGGAGTATCATCTGCGGAGACC +
Preference number: 6 (lower is better)
Translates to: RDFFLAILVKKL*RMVPGVSSAET
Trigger: GGTCTCCGCAGATGATACTCCTGGTACCATCCTCCAGAGCTTCTTCACCAAGATGGCCAAGAAGAAGTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp GGCGTGTCGAGCACCAGGTGTATTTCATCTCCGTTCTaGAGGCACTGCCTCACCCACTGGAAATTTTTGAGG +
Preference number: 6 (lower is better)
Translates to: GVSSTRCISSPF*RHCLTHWKFLR
Trigger: CCTCAAAAATTTCCAGTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAATACACCTGGTGCTCGACACGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp TTCCGAGGCAGGACAGGGATATCAATGCCTCTGATCTaGACCCTGAACTTTCGGTCGCAGTCCCACAAAGAC +
Preference number: 6 (lower is better)
Translates to: FRGRTGISMPLI*TLNFRSQSHKD
Trigger: GTCTTTGTGGGACTGCGACCGAAAGTTCAGGGTCAAGATCAGAGGCATTGATATCCCTGTCCTGCCTCGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp ATAGATCTCATACCATTGTCCTTTCTTCTGGTAGAGCAGGAGGAATaGGTCCGGGCCCAATCGGTGGTAGAACTCCGCAGCCACACTGGT +
Preference number: 6 (lower is better)
Translates to: IDLIPLSFLLVEQEE*VRAQSVVELRSHTG
Trigger: ACCAGTGTGGCTGCGGAGTTCTACCACCGATTGGGCCCGGACCAATTCCTCCTGCTCTACCAGAAGAAAGGACAATGGTATGAGATCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp ATTTCATCTCCGTTCTTGAGGCACTGCCTCACCCACTGGAAATTTTaGAGGGGTGTTTCACCCACCAGGTACTCATCGCGGCCACAAACC +
Preference number: 6 (lower is better)
Translates to: ISSPFLRHCLTHWKF*RGVSPTRYSSRPQT
Trigger: GGTTTGTGGCCGCGATGAGTACCTGGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp ACTGTGGGATCAGCACACTTAAACTCAAGCCACAGGGGCTTCTTCTaGGAGGCCATCACTTTGCATTTCTCGATCACCAGGGTACCGGCT +
Preference number: 6 (lower is better)
Translates to: TVGSAHLNSSHRGFF*EAITLHFSITRVPA
Trigger: AGCCGGTACCCTGGTGATCGAGAAATGCAAAGTGATGGCCTCCAAGAAGAAGCCCCTGTGGCTTGAGTTTAAGTGTGCTGATCCCACAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp ATGGACATTGAGTTCTCCTTGTCAGGATTGGTTGCGGATGTGAGCTaGTCAGCATTGAAGCTGCCCTGCTCCTCTGCCTTGCCAGATATC +
Preference number: 6 (lower is better)
Translates to: MDIEFSLSGLVADVS*SALKLPCSSALPDI
Trigger: GATATCTGGCAAGGCAGAGGAGCAGGGCAGCTTCAATGCTGACAAGCTCACATCCGCAACCAATCCTGACAAGGAGAACTCAATGTCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp TTGTCCAGCAGGATGGAAATGGACATTGAGTTCTCCTTGTCAGGATaGGTTGCGGATGTGAGCTTGTCAGCATTGAAGCTGCCCTGCTCC +
Preference number: 6 (lower is better)
Translates to: LSSRMEMDIEFSLSG*VADVSLSALKLPCS
Trigger: GGAGCAGGGCAGCTTCAATGCTGACAAGCTCACATCCGCAACCAATCCTGACAAGGAGAACTCAATGTCCATTTCCATCCTGCTGGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS TCA 72 bp CTTTCTGTAACATCTCAATCACATGGACCTGCTGTGTaGAGTCCTGCAACATGGCTGTGCCACAGCCTCGCA +
Preference number: 6 (lower is better)
Translates to: LSVTSQSHGPAV*SPATWLCHSLA
Trigger: TGCGAGGCTGTGGCACAGCCATGTTGCAGGACTTCACACAGCAGGTCCATGTGATTGAGATGTTACAGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 72 bp GATCACAGCGAACCTCTGCTGATAGTGTCTGGACTGTaGGATCTCACTTCGCAGGAACCAGAACAAGAAGTG +
Preference number: 6 (lower is better)
Translates to: DHSEPLLIVSGL*DLTSQEPEQEV
Trigger: CACTTCTTGTTCTGGTTCCTGCGAAGTGAGATCGCACAGTCCAGACACTATCAGCAGAGGTTCGCTGTGATC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp GGGGTTAAGTGGATCTGTGGCTATGATCGCCTCCAATaGCTTTCGAAGCTGATTGGGCATTTCAGCCCGAAC +
Preference number: 6 (lower is better)
Translates to: GVKWICGYDRLQ*LSKLIGHFSPN
Trigger: GTTCGGGCTGAAATGCCCAATCAGCTTCGAAAGCAATTGGAGGCGATCATAGCCACAGATCCACTTAACCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS TCA 72 bp TGTGCGATCTCACTTCGCAGGAACCAGAACAAGAAGTaGCCGATTCTTTTGTTCCTCAAGCCACGCTTCAGC +
Preference number: 6 (lower is better)
Translates to: CAISLRRNQNKK*PILLFLKPRFS
Trigger: GCTGAAGCGTGGCTTGAGGAACAAAAGAATCGGTCACTTCTTGTTCTGGTTCCTGCGAAGTGAGATCGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp ATTTCATCTCCGTTCTTGAGGCACTGCCTCACCCACTaGAAATTTTTGAGGGGTGTTTCACCCACCAGGTAC +
Preference number: 6 (lower is better)
Translates to: ISSPFLRHCLTH*KFLRGVSPTRY
Trigger: GTACCTGGTGGGTGAAACACCCCTCAAAAATTTCCAGTGGGTGAGGCAGTGCCTCAAGAACGGAGATGAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp GAGCAATTCTTTGTCCTCTGCTGTGAGGGGGTTAAGTaGATCTGTGGCTATGATCGCCTCCAATTGCTTTCG +
Preference number: 6 (lower is better)
Translates to: EQFFVLCCEGVK*ICGYDRLQLLS
Trigger: CGAAAGCAATTGGAGGCGATCATAGCCACAGATCCACTTAACCCCCTCACAGCAGAGGACAAAGAATTGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp CATCGTCCTCTAAGCTCTCCAGTTTCTGAACTGCAATaGCCCGGACATTCTCGTCTGAAAAGTTGCAGTCCA +
Preference number: 6 (lower is better)
Translates to: HRPLSSPVSELQ*PGHSRLKSCSP
Trigger: TGGACTGCAACTTTTCAGACGAGAATGTCCGGGCCATTGCAGTTCAGAAACTGGAGAGCTTAGAGGACGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp TTCTTTTGTTCCTCAAGCCACGCTTCAGCAGGAATCTaGCCAGCGCACTGTCGTGGTACGGTTCAAATTTCA +
Preference number: 6 (lower is better)
Translates to: FFCSSSHASAGI*PAHCRGTVQIS
Trigger: TGAAATTTGAACCGTACCACGACAGTGCGCTGGCCAGATTCCTGCTGAAGCGTGGCTTGAGGAACAAAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp TCAGCACACTTAAACTCAAGCCACAGGGGCTTCTTCTaGGAGGCCATCACTTTGCATTTCTCGATCACCAGG +
Preference number: 6 (lower is better)
Translates to: SAHLNSSHRGFF*EAITLHFSITR
Trigger: CCTGGTGATCGAGAAATGCAAAGTGATGGCCTCCAAGAAGAAGCCCCTGTGGCTTGAGTTTAAGTGTGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 72 bp CTGGCTAACAGCTGGTACGTTTTGGCAACAATTTCTTaGTGCCCCCATTTCACTGAGCTGAATAGCTTAGGG +
Preference number: 6 (lower is better)
Translates to: LANSWYVLATIS*CPHFTELNSLG
Trigger: CCCTAAGCTATTCAGCTCAGTGAAATGGGGGCAGCAAGAAATTGTTGCCAAAACGTACCAGCTGTTAGCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp CTATGGGGTGACAGTAATTGTCCAGCAGGATGGAAATaGACATTGAGTTCTCCTTGTCAGGATTGGTTGCGG +
Preference number: 6 (lower is better)
Translates to: LWGDSNCPAGWK*TLSSPCQDWLR
Trigger: CCGCAACCAATCCTGACAAGGAGAACTCAATGTCCATTTCCATCCTGCTGGACAATTACTGTCACCCCATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp CATTCTCGTCTGAAAAGTTGCAGTCCAGGAGCTGCATaGTTAAGCCAACGTCCAAAGCACTTTGATCCCAGA +
Preference number: 6 (lower is better)
Translates to: HSRLKSCSPGAA*LSQRPKHFDPR
Trigger: TCTGGGATCAAAGTGCTTTGGACGTTGGCTTAACCATGCAGCTCCTGGACTGCAACTTTTCAGACGAGAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp TTGTCCAGCAGGATGGAAATGGACATTGAGTTCTCCTaGTCAGGATTGGTTGCGGATGTGAGCTTGTCAGCA +
Preference number: 6 (lower is better)
Translates to: LSSRMEMDIEFS*SGLVADVSLSA
Trigger: TGCTGACAAGCTCACATCCGCAACCAATCCTGACAAGGAGAACTCAATGTCCATTTCCATCCTGCTGGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp GAATGCCCCCGTGTTACCCACTGTGCTTTGCTGAATTaGAGCGATCGTTGTGGCATCCTTTACAATCTCGAT +
Preference number: 6 (lower is better)
Translates to: ECPRVTHCALLN*SDRCGILYNLD
Trigger: ATCGAGATTGTAAAGGATGCCACAACGATCGCTCAAATTCAGCAAAGCACAGTGGGTAACACGGGGGCATTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp TTCGGATGCTTCAGGCTTTCATATCGAAAATGCCAGAGCAATTCTTaGTCCTCTGCTGTGAGGGGGTTAAGTGGATCTGTGGCTATGATC +
Preference number: 6 (lower is better)
Translates to: FGCFRLSYRKCQSNS*SSAVRGLSGSVAMI
Trigger: GATCATAGCCACAGATCCACTTAACCCCCTCACAGCAGAGGACAAAGAATTGCTCTGGCATTTTCGATATGAAAGCCTGAAGCATCCGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp ATGCCCCCGTGTTACCCACTGTGCTTTGCTGAATTTGAGCGATCGTaGTGGCATCCTTTACAATCTCGATCATTCCTATTTTGTCACCAG +
Preference number: 6 (lower is better)
Translates to: MPPCYPLCFAEFERS*WHPLQSRSFLFCHQ
Trigger: CTGGTGACAAAATAGGAATGATCGAGATTGTAAAGGATGCCACAACGATCGCTCAAATTCAGCAAAGCACAGTGGGTAACACGGGGGCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS TCA 72 bp TGTAAAACGTCATCGTCCTCTAAGCTCTCCAGTTTCTaGACTGCAATGGCCCGGACATTCTCGTCTGAAAAG +
Preference number: 6 (lower is better)
Translates to: CKTSSSSKLSSF*TAMARTFSSEK
Trigger: CTTTTCAGACGAGAATGTCCGGGCCATTGCAGTTCAGAAACTGGAGAGCTTAGAGGACGATGACGTTTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS TCA 72 bp ACAGGTCCAGAGATTCAGTCTCCCAAATGGACTCCATaGTGCGTAGAATCTGCAAGATCAACATGTCTTGGC +
Preference number: 6 (lower is better)
Translates to: TGPEIQSPKWTP*CVESARSTCLG
Trigger: GCCAAGACATGTTGATCTTGCAGATTCTACGCATCATGGAGTCCATTTGGGAGACTGAATCTCTGGACCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp GCAAAGCTATGGGGTGACAGTAATTGTCCAGCAGGATaGAAATGGACATTGAGTTCTCCTTGTCAGGATTGG +
Preference number: 6 (lower is better)
Translates to: AKLWGDSNCPAG*KWTLSSPCQDW
Trigger: CCAATCCTGACAAGGAGAACTCAATGTCCATTTCCATCCTGCTGGACAATTACTGTCACCCCATAGCTTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp AGGTTCAATAGAGCCCCTTTGGGCAAGTCTTTGATTTaGATGCCAAACTCCAGCCACACATTCCAGAGTACC +
Preference number: 6 (lower is better)
Translates to: RFNRAPLGKSLI*MPNSSHTFQST
Trigger: GGTACTCTGGAATGTGTGGCTGGAGTTTGGCATCAAAATCAAAGACTTGCCCAAAGGGGCTCTATTGAACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp AGGATGGAAATGGACATTGAGTTCTCCTTGTCAGGATaGGTTGCGGATGTGAGCTTGTCAGCATTGAAGCTG +
Preference number: 6 (lower is better)
Translates to: RMEMDIEFSLSG*VADVSLSALKL
Trigger: CAGCTTCAATGCTGACAAGCTCACATCCGCAACCAATCCTGACAAGGAGAACTCAATGTCCATTTCCATCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp TTCATCTTTGAATGCCCCCGTGTTACCCACTGTGCTTaGCTGAATTTGAGCGATCGTTGTGGCATCCTTTAC +
Preference number: 6 (lower is better)
Translates to: FIFECPRVTHCA*LNLSDRCGILY
Trigger: GTAAAGGATGCCACAACGATCGCTCAAATTCAGCAAAGCACAGTGGGTAACACGGGGGCATTCAAAGATGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp TGGCGCAGATCATCACCATGTTTAAAGATGATTCCAATGGTTTCGTaGGATAGGACTGTGGGATCAGCACACTTAAACTCAAGCCACAGG +
Preference number: 6 (lower is better)
Translates to: WRRSSPCLKMIPMVS*DRTVGSAHLNSSHR
Trigger: CCTGTGGCTTGAGTTTAAGTGTGCTGATCCCACAGTCCTATCCAACGAAACCATTGGAATCATCTTTAAACATGGTGATGATCTGCGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp ATTCAGGACTTCATCTTTGAATGCCCCCGTGTTACCCACTGTGCTTaGCTGAATTTGAGCGATCGTTGTGGCATCCTTTACAATCTCGAT +
Preference number: 6 (lower is better)
Translates to: IQDFIFECPRVTHCA*LNLSDRCGILYNLD
Trigger: ATCGAGATTGTAAAGGATGCCACAACGATCGCTCAAATTCAGCAAAGCACAGTGGGTAACACGGGGGCATTCAAAGATGAAGTCCTGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp ATCTGTAGGTTCAATAGAGCCCCTTTGGGCAAGTCTTaGATTTTGATGCCAAACTCCAGCCACACATTCCAG +
Preference number: 6 (lower is better)
Translates to: ICRFNRAPLGKS*ILMPNSSHTFQ
Trigger: CTGGAATGTGTGGCTGGAGTTTGGCATCAAAATCAAAGACTTGCCCAAAGGGGCTCTATTGAACCTACAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp TTCAGGCTTTCATATCGAAAATGCCAGAGCAATTCTTaGTCCTCTGCTGTGAGGGGGTTAAGTGGATCTGTG +
Preference number: 6 (lower is better)
Translates to: FRLSYRKCQSNS*SSAVRGLSGSV
Trigger: CACAGATCCACTTAACCCCCTCACAGCAGAGGACAAAGAATTGCTCTGGCATTTTCGATATGAAAGCCTGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp CCTTTACAATCTCGATCATTCCTATTTTGTCACCAGTaGAGATGCAACCGTAAGGCAGAAGGCACAGGTCCA +
Preference number: 6 (lower is better)
Translates to: PLQSRSFLFCHQ*RCNRKAEGTGP
Trigger: TGGACCTGTGCCTTCTGCCTTACGGTTGCATCTCAACTGGTGACAAAATAGGAATGATCGAGATTGTAAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 90 bp TTCATCTTTGAATGCCCCCGTGTTACCCACTGTGCTTTGCTGAATTaGAGCGATCGTTGTGGCATCCTTTACAATCTCGATCATTCCTAT +
Preference number: 6 (lower is better)
Translates to: FIFECPRVTHCALLN*SDRCGILYNLDHSY
Trigger: ATAGGAATGATCGAGATTGTAAAGGATGCCACAACGATCGCTCAAATTCAGCAAAGCACAGTGGGTAACACGGGGGCATTCAAAGATGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS TCA 72 bp AGATATTCATTAGGGACTTCTTCTTGGCCATCTTGGTaGAGAAGCTCTGGAGGATGGTACCAGGAGTATCAT +
Preference number: 6 (lower is better)
Translates to: RYSLGTSSWPSW*RSSGGWYQEYH
Trigger: ATGATACTCCTGGTACCATCCTCCAGAGCTTCTTCACCAAGATGGCCAAGAAGAAGTCCCTAATGAATATCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS GCA 72 bp TTCATATCGAAAATGCCAGAGCAATTCTTTGTCCTCTaGTGTGAGGGGGTTAAGTGGATCTGTGGCTATGAT +
Preference number: 6 (lower is better)
Translates to: FISKMPEQFFVL*CEGVKWICGYD
Trigger: ATCATAGCCACAGATCCACTTAACCCCCTCACAGCAGAGGACAAAGAATTGCTCTGGCATTTTCGATATGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp TCCATGATGCGTAGAATCTGCAAGATCAACATGTCTTaGCGCAGATCATCACCATGTTTAAAGATGATTCCA +
Preference number: 6 (lower is better)
Translates to: SMMRRICKINMS*RRSSPCLKMIP
Trigger: TGGAATCATCTTTAAACATGGTGATGATCTGCGCCAAGACATGTTGATCTTGCAGATTCTACGCATCATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CCA 72 bp TACCCACTGTGCTTTGCTGAATTTGAGCGATCGTTGTaGCATCCTTTACAATCTCGATCATTCCTATTTTGT +
Preference number: 6 (lower is better)
Translates to: YPLCFAEFERSL*HPLQSRSFLFC
Trigger: ACAAAATAGGAATGATCGAGATTGTAAAGGATGCCACAACGATCGCTCAAATTCAGCAAAGCACAGTGGGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2
CDS CAA 72 bp TCATCACCATGTTTAAAGATGATTCCAATGGTTTCGTaGGATAGGACTGTGGGATCAGCACACTTAAACTCA +
Preference number: 6 (lower is better)
Translates to: SSPCLKMIPMVS*DRTVGSAHLNS
Trigger: TGAGTTTAAGTGTGCTGATCCCACAGTCCTATCCAACGAAACCATTGGAATCATCTTTAAACATGGTGATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053215.14
ENSMUST00000085469.6
ENSMUST00000156904.8
ENSMUST00000217915.2
ENSMUST00000220366.2