RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PIK3CA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027665

Ensembl transcript IDs: ENSMUST00000029201.14, ENSMUST00000108242.2, ENSMUST00000108243.8

Found 412 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGTGCCATCCCATGCCACTGCCTGCCTGCTGCCACTCACTGCCATaGAGTGGAGAAGCCGGGAGCCAGCTCGCAGTCCCAGCTCCCATC +
Preference number: 1 (lower is better)
Translates to: LCHPMPLPACCHSLP*SGEAGSQLAVPAPI
Trigger: GATGGGAGCTGGGACTGCGAGCTGGCTCCCGGCTTCTCCACTGCATGGCAGTGAGTGGCAGCAGGCAGGCAGTGGCATGGGATGGCACAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR CCA 90 bp CTTCCGGCCGGGCAGGTGTTGGCACACGCCTTTAATCCCGGTACTTaGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGG +
Preference number: 1 (lower is better)
Translates to: LPAGQVLAHAFNPGT*EAEAGRFLSLRPAW
Trigger: CCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTACCGGGATTAAAGGCGTGTGCCAACACCTGCCCGGCCGGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR CCA 90 bp CCGAGTCCCACAGCACTTTCTGGTACTGAAGCACCTGGGAGTAAGTaGCACATTATTGCTCTCTGGAAGCAGATATTGATCACCCCAGCT +
Preference number: 1 (lower is better)
Translates to: PSPTALSGTEAPGSK*HIIALWKQILITPA
Trigger: AGCTGGGGTGATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTCAGTACCAGAAAGTGCTGTGGGACTCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR TCA 90 bp CACAGGATGGAGCCTCATTTCAGTCCTGCCCACCAACACTCTTTGTaGCACCTGAGAAGTGTGATAACTGCTCTGTTCCCATTCCCTTTG +
Preference number: 1 (lower is better)
Translates to: HRMEPHFSPAHQHSL*HLRSVITALFPFPL
Trigger: CAAAGGGAATGGGAACAGAGCAGTTATCACACTTCTCAGGTGTCACAAAGAGTGTTGGTGGGCAGGACTGAAATGAGGCTCCATCCTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR TCA 90 bp TTAAAACAGGTTCGTCTTTTCTGTGACGCCACATCAGCTGGCTCCTaGCGAGCAGAGAACACAGATGGATCGTGCTCTGTCTCTGTGATA +
Preference number: 1 (lower is better)
Translates to: LKQVRLFCDATSAGS*RAENTDGSCSVSVI
Trigger: TATCACAGAGACAGAGCACGATCCATCTGTGTTCTCTGCTCGTCAGGAGCCAGCTGATGTGGCGTCACAGAAAAGACGAACCTGTTTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR TCA 90 bp CCTGTCTCCTGGTCCATGAACAGCAGCGCATGCCCAATCTTGACTTaGAAACCTACAATGAGATTCTCTTTGCTGTCCTGTGAGAGCACT +
Preference number: 1 (lower is better)
Translates to: PVSWSMNSSACPILT*KPTMRFSLLSCEST
Trigger: AGTGCTCTCACAGGACAGCAAAGAGAATCTCATTGTAGGTTTTCAAGTCAAGATTGGGCATGCGCTGCTGTTCATGGACCAGGAGACAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR CCA 90 bp TCTACTGCTGGTAGTGAGTTAAAAATCAGCCAACAGCACACAGGATaGAGCCTCATTTCAGTCCTGCCCACCAACACTCTTTGTGACACC +
Preference number: 1 (lower is better)
Translates to: STAGSELKISQQHTG*SLISVLPTNTLCDT
Trigger: GGTGTCACAAAGAGTGTTGGTGGGCAGGACTGAAATGAGGCTCCATCCTGTGTGCTGTTGGCTGATTTTTAACTCACTACCAGCAGTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR GCA 90 bp TCCTGCCCACCAACACTCTTTGTGACACCTGAGAAGTGTGATAACTaGTCTGTTCCCATTCCCTTTGCTGTAATTAGCACACGGCTGATA +
Preference number: 1 (lower is better)
Translates to: SCPPTLFVTPEKCDN*SVPIPFAVISTRLI
Trigger: TATCAGCCGTGTGCTAATTACAGCAAAGGGAATGGGAACAGAGCAGTTATCACACTTCTCAGGTGTCACAAAGAGTGTTGGTGGGCAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR CCA 90 bp TCTGGTACTGAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTaGAAGCAGATATTGATCACCCCAGCTGCAATTCAAGTTTGGCTT +
Preference number: 1 (lower is better)
Translates to: SGTEAPGSKWHIIAL*KQILITPAAIQVWL
Trigger: AAGCCAAACTTGAATTGCAGCTGGGGTGATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTCAGTACCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR TCA 90 bp TCAAGCCCAGAGCTCCACTCCACACACATTTGTTGGGCTAACAACTaGCCCAAATTCCCATGCTTTAATTGGAAACACCAAAGGTTCTTC +
Preference number: 1 (lower is better)
Translates to: SSPELHSTHICWANN*PKFPCFNWKHQRFF
Trigger: GAAGAACCTTTGGTGTTTCCAATTAAAGCATGGGAATTTGGGTCAGTTGTTAGCCCAACAAATGTGTGTGGAGTGGAGCTCTGGGCTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR TCA 90 bp ATCTTAGATGGATGCATTTCAGAATGCTCACTAATGCACCGTGCCTaGATGGGATTTAATGACACTGGAGTGAGACCTCACCACTTGGAA +
Preference number: 1 (lower is better)
Translates to: ILDGCISECSLMHRA*MGFNDTGVRPHHLE
Trigger: TTCCAAGTGGTGAGGTCTCACTCCAGTGTCATTAAATCCCATTCAGGCACGGTGCATTAGTGAGCATTCTGAAATGCATCCATCTAAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR GCA 90 bp TTGCGTGTACAGTGTTTCAATTATAGAGCACGTTGTTTATGTTCTTaGTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCAC +
Preference number: 1 (lower is better)
Translates to: LRVQCFNYRARCLCS*SSPNVVPDCAIPCH
Trigger: GTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAGAACATAAACAACGTGCTCTATAATTGAAACACTGTACACGCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR TCA 90 bp TTTGGTGTGGCATCTGAGTATCTGCTAAAGCTATTTTCTAGGACATaGATCATTCAAACACTGAGTAGAAATCTAGAGCGACCACTAACA +
Preference number: 1 (lower is better)
Translates to: FGVASEYLLKLFSRT*IIQTLSRNLERPLT
Trigger: TGTTAGTGGTCGCTCTAGATTTCTACTCAGTGTTTGAATGATTCATGTCCTAGAAAATAGCTTTAGCAGATACTCAGATGCCACACCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR CCA 90 bp ATGAGGTTATATAAAGTCCACGTGGCCTATAAAGTATTTTCCTTTTaGTACTTATTACCACGAGAAATGGCATCTACTGCTGGTAGTGAG +
Preference number: 1 (lower is better)
Translates to: MRLYKVHVAYKVFSF*YLLPREMASTAGSE
Trigger: CTCACTACCAGCAGTAGATGCCATTTCTCGTGGTAATAAGTACCAAAAGGAAAATACTTTATAGGCCACGTGGACTTTATATAACCTCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR GCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGTCCCATGCCACTGCCTaGCTGCTGCCACTCACTGCC +
Preference number: 2 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLSHATA*LLPLTA
Trigger: GGCAGTGAGTGGCAGCAGGCAGGCAGTGGCATGGGA...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGCCACTGCCTGCCTGCTaGCACTCACTGCCATGCAGT +
Preference number: 2 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLPLPAC*HSLPCS
Trigger: ACTGCATGGCAGTGAGTGGCAGCAGGCAGGCAGTGG...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGCTCACTGCCATGCAGTaGAGAAGCCGGGAGCCAGCT +
Preference number: 2 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLLTAMQ*RSREPA
Trigger: AGCTGGCTCCCGGCTTCTCCACTGCATGGCAGTGAG...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR CAA 90 bp TCCTTTCTAGTACGTGGACAGCATCCCTGTAACTTCCATGCCCCTTaGTGCTTCTCCCTGCTCAGGCCCTTCCACCACACCCCCATCTCC +
Preference number: 2 (lower is better)
Translates to: SFLVRGQHPCNFHAP*CFSLLRPFHHTPIS
Trigger: GGAGATGGGGGTGTGGTGGAAGGGCCTGAGCAGGGAGAAGCACAAAGGGGCATGGAAGTTACAGGGATGCTGTCCACGTACTAGAAAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR GCA 90 bp GAGGATCTTGAATTTGAGGCCAGCCTGGGCTACACTGAGACCTTGTACCAACAATCCCATGCCACTGCCTaGCTGCTGCCACTCACTGCC +
Preference number: 2 (lower is better)
Translates to: EDLEFEASLGYTETLYQQSHATA*LLPLTA
Trigger: GGCAGTGAGTGGCAGCAGGCAGGCAGTGGCATGGGA...TTGTTGGTACAAGGTCTCAGTGTAGCCCAGGCTGGCCTCAAATTCAAGATCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR GCA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATAGGAACAGGGGCTCCCTaGGGCCTCTCCTCTGCCCTT +
Preference number: 2 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIGTGAP*GLSSAL
Trigger: AAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCC...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGGCCATCCCATGCCACTaGCTGCCTGCTGCCACTCAC +
Preference number: 2 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEAIPCH*LPAATH
Trigger: GTGAGTGGCAGCAGGCAGGCAGTGGCATGGGATGGC...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCGACTGTGCCATCCCATaGCACTGCCTGCCTGCTGCC +
Preference number: 2 (lower is better)
Translates to: EAPGSKWHIIALWKQILIDCAIP*HCLPAA
Trigger: GGCAGCAGGCAGGCAGTGGCATGGGATGGCACAGTC...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR TCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCCTCCCCAGGAACGCCTaGGCTAGGAACTGTCAGGAG +
Preference number: 2 (lower is better)
Translates to: EAPGSKWHIIALWKQILILPRNA*ARNCQE
Trigger: CTCCTGACAGTTCCTAGCTCAGGCGTTCCTGGGGAG...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGTGCCACTCACTGCCATaGAGTGGAGAAGCCGGGAGC +
Preference number: 2 (lower is better)
Translates to: TKTQLSASIVTAFKTAGECHSLP*SGEAGS
Trigger: GCTCCCGGCTTCTCCACTGCATGGCAGTGAGTGGCA...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp ATGACAATAGAACCATCAGCTGCATTTGAAGCACGGATTCTTGGAGCCTGGAGTCCACTGCCTGCCTGCTaGCACTCACTGCCATGCAGT +
Preference number: 2 (lower is better)
Translates to: MTIEPSAAFEARILGAWSPLPAC*HSLPCS
Trigger: ACTGCATGGCAGTGAGTGGCAGCAGGCAGGCAGTGG...ACTCCAGGCTCCAAGAATCCGTGCTTCAAATGCAGCTGATGGTTCTATTGTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR TCA 90 bp AGGTTCGTCTTTTCTGTGACGCCACATCAGCTGGCTCCTGACGAGCAGAGAACAGTAAAGAGTCACTCATaGCTAGACCTCTGCAGAAGG +
Preference number: 2 (lower is better)
Translates to: RFVFSVTPHQLAPDEQRTVKSHS*LDLCRR
Trigger: CCTTCTGCAGAGGTCTAGTCATGAGTGACTCTTTAC...TGTTCTCTGCTCGTCAGGAGCCAGCTGATGTGGCGTCACAGAAAAGACGAACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR GCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAGCCATCCCATGCCACTaGCTGCCTGCTGCCACTCAC +
Preference number: 2 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLAIPCH*LPAATH
Trigger: GTGAGTGGCAGCAGGCAGGCAGTGGCATGGGATGGC...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGGCCATCCCATGCCACTaGCTGCCTGCTGCCACTCAC +
Preference number: 2 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGAIPCH*LPAATH
Trigger: GTGAGTGGCAGCAGGCAGGCAGTGGCATGGGATGGC...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAGACTGTGCCATCCCATaGCACTGCCTGCCTGCTGCC +
Preference number: 2 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLDCAIP*HCLPAA
Trigger: GGCAGCAGGCAGGCAGTGGCATGGGATGGCACAGTC...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp GAGAAGTGTGATAACTGCTCTGTTCCCATTCCCTTTGCTGTAATTAGCACACGGTTCCATGCCCCTTTGTaGTTCTCCCTGCTCAGGCCC +
Preference number: 2 (lower is better)
Translates to: EKCDNCSVPIPFAVISTRFHAPL*FSLLRP
Trigger: GGGCCTGAGCAGGGAGAAGCACAAAGGGGCATGGAA...CCGTGTGCTAATTACAGCAAAGGGAATGGGAACAGAGCAGTTATCACACTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR CCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGAAGTCTGAACAGCAATaGGAAAATCAGAATTTTCCT +
Preference number: 2 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLKSEQQ*ENQNFP
Trigger: AGGAAAATTCTGATTTTCCCATTGCTGTTCAGACTT...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp AGCAGAGAACACAGATGGATCGTGCTCTGTCTCTGTGATAATTACCAATCTCTTTGCCACTCACTGCCATaGAGTGGAGAAGCCGGGAGC +
Preference number: 2 (lower is better)
Translates to: SREHRWIVLCLCDNYQSLCHSLP*SGEAGS
Trigger: GCTCCCGGCTTCTCCACTGCATGGCAGTGAGTGGCA...AAGAGATTGGTAATTATCACAGAGACAGAGCACGATCCATCTGTGTTCTCTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR GCA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGTGCCACTCACTGCCATaGAGTGGAGAAGCCGGGAGC +
Preference number: 2 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGCHSLP*SGEAGS
Trigger: GCTCCCGGCTTCTCCACTGCATGGCAGTGAGTGGCA...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAATGCCACTGCCTGCCTaGTGCCACTCACTGCCATGC +
Preference number: 2 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLMPLPA*CHSLPC
Trigger: GCATGGCAGTGAGTGGCAGCAGGCAGGCAGTGGCAT...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACTCCCATGCCACTGCCTaGCTGCTGCCACTCACTGCC +
Preference number: 2 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHSHATA*LLPLTA
Trigger: GGCAGTGAGTGGCAGCAGGCAGGCAGTGGCATGGGA...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CCA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGCTCACTGCCATGCAGTaGAGAAGCCGGGAGCCAGCT +
Preference number: 2 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGLTAMQ*RSREPA
Trigger: AGCTGGCTCCCGGCTTCTCCACTGCATGGCAGTGAG...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACATGCCACTGCCTGCCTaGTGCCACTCACTGCCATGC +
Preference number: 2 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHMPLPA*CHSLPC
Trigger: GCATGGCAGTGAGTGGCAGCAGGCAGGCAGTGGCAT...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGGGAACAGGGGCTCCCTaGGGCCTCTCCTCTGCCCTT +
Preference number: 2 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTGTGAP*GLSSAL
Trigger: AAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCC...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGCTCACTGCCATGCAGTaGAGAAGCCGGGAGCCAGCT +
Preference number: 2 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTLTAMQ*RSREPA
Trigger: AGCTGGCTCCCGGCTTCTCCACTGCATGGCAGTGAG...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CCA 90 bp ATGACAATAGAACCATCAGCTGCATTTGAAGCACGGATTCTTGGAGCCTGGAGTGTCTATATAGGTGTCTaGCCTCAAGGTGAGCACTGT +
Preference number: 2 (lower is better)
Translates to: MTIEPSAAFEARILGAWSVYIGV*PQGEHC
Trigger: ACAGTGCTCACCTTGAGGCCAGACACCTATATAGAC...ACTCCAGGCTCCAAGAATCCGTGCTTCAAATGCAGCTGATGGTTCTATTGTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR CCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCGTCTATATAGGTGTCTaGCCTCAAGGTGAGCACTGT +
Preference number: 2 (lower is better)
Translates to: EAPGSKWHIIALWKQILIVYIGV*PQGEHC
Trigger: ACAGTGCTCACCTTGAGGCCAGACACCTATATAGAC...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR TCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCGTAACGGGTTTCATGTaGTTGTGCTGTCTCAACTAC +
Preference number: 2 (lower is better)
Translates to: EAPGSKWHIIALWKQILIVTGFM*LCCLNY
Trigger: GTAGTTGAGACAGCACAATCACATGAAACCCGTTAC...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR TCA 90 bp ATGACAATAGAACCATCAGCTGCATTTGAAGCACGGATTCTTGGAGCCTGGAGTATTCCAACCTGGAACTaGTTCCTTTCTAGTACGTGG +
Preference number: 2 (lower is better)
Translates to: MTIEPSAAFEARILGAWSIPTWN*FLSSTW
Trigger: CCACGTACTAGAAAGGAATCAGTTCCAGGTTGGAAT...ACTCCAGGCTCCAAGAATCCGTGCTTCAAATGCAGCTGATGGTTCTATTGTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR TCA 90 bp GAGGATCTTGAATTTGAGGCCAGCCTGGGCTACACTGAGACCTTGTACCAACAATGCCCAATCTTGACTTaGAAACCTACAATGAGATTC +
Preference number: 2 (lower is better)
Translates to: EDLEFEASLGYTETLYQQCPILT*KPTMRF
Trigger: GAATCTCATTGTAGGTTTTCAAGTCAAGATTGGGCA...TTGTTGGTACAAGGTCTCAGTGTAGCCCAGGCTGGCCTCAAATTCAAGATCCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR GCA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATAAGTGCTATCAAACCCTaGTTGCGTGTACAGTGTTTC +
Preference number: 2 (lower is better)
Translates to: LSLIYRPREKLTMLLPTISAIKP*LRVQCF
Trigger: GAAACACTGTACACGCAAGCAGGGTTTGATAGCACT...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTGGATGCATTTCAGAATaGTCACTAATGCACCGTGCC +
Preference number: 2 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFGCISE*SLMHRA
Trigger: GGCACGGTGCATTAGTGAGCATTCTGAAATGCATCC...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp GAGAAGTGTGATAACTGCTCTGTTCCCATTCCCTTTGCTGTAATTAGCACACGGCAGGGCTATCAGGAATaGAATTCTTTTGAGCTGGAG +
Preference number: 2 (lower is better)
Translates to: EKCDNCSVPIPFAVISTRQGYQE*NSFELE
Trigger: CTCCAGCTCAAAAGAATTGCATTCCTGATAGCCCTG...CCGTGTGCTAATTACAGCAAAGGGAATGGGAACAGAGCAGTTATCACACTTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR CCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTTGCACCGTGCCTGAATaGGATTTAATGACACTGGAG +
Preference number: 2 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFCTVPE*DLMTLE
Trigger: CTCCAGTGTCATTAAATCCCATTCAGGCACGGTGCA...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CCA 90 bp ATGACAATAGAACCATCAGCTGCATTTGAAGCACGGATTCTTGGAGCCTGGAGTGCAATTCTTTTGAGCTaGAGCCCAACATCTTTCCAG +
Preference number: 2 (lower is better)
Translates to: MTIEPSAAFEARILGAWSAILLS*SPTSFQ
Trigger: CTGGAAAGATGTTGGGCTCCAGCTCAAAAGAATTGC...ACTCCAGGCTCCAAGAATCCGTGCTTCAAATGCAGCTGATGGTTCTATTGTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR GCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTAGTGCTATCAAACCCTaGTTGCGTGTACAGTGTTTC +
Preference number: 2 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFSAIKP*LRVQCF
Trigger: GAAACACTGTACACGCAAGCAGGGTTTGATAGCACT...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp GAGAAGTGTGATAACTGCTCTGTTCCCATTCCCTTTGCTGTAATTAGCACACGGTGGGGTGCAAAACAATaGATGACTATGGGACAGATT +
Preference number: 2 (lower is better)
Translates to: EKCDNCSVPIPFAVISTRWGAKQ*MTMGQI
Trigger: AATCTGTCCCATAGTCATGCATTGTTTTGCACCCCA...CCGTGTGCTAATTACAGCAAAGGGAATGGGAACAGAGCAGTTATCACACTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR GCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCTGGGGTGCAAAACAATaGATGACTATGGGACAGATT +
Preference number: 2 (lower is better)
Translates to: EAPGSKWHIIALWKQILIWGAKQ*MTMGQI
Trigger: AATCTGTCCCATAGTCATGCATTGTTTTGCACCCCA...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CCA 90 bp AGCAGAGAACACAGATGGATCGTGCTCTGTCTCTGTGATAATTACCAATCTCTTTGCACCGTGCCTGAATaGGATTTAATGACACTGGAG +
Preference number: 2 (lower is better)
Translates to: SREHRWIVLCLCDNYQSLCTVPE*DLMTLE
Trigger: CTCCAGTGTCATTAAATCCCATTCAGGCACGGTGCA...AAGAGATTGGTAATTATCACAGAGACAGAGCACGATCCATCTGTGTTCTCTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR TCA 90 bp ATGACAATAGAACCATCAGCTGCATTTGAAGCACGGATTCTTGGAGCCTGGAGTGTGCAAAACAATGCATaGCTATGGGACAGATTATGT +
Preference number: 2 (lower is better)
Translates to: MTIEPSAAFEARILGAWSVQNNA*LWDRLC
Trigger: ACATAATCTGTCCCATAGTCATGCATTGTTTTGCAC...ACTCCAGGCTCCAAGAATCCGTGCTTCAAATGCAGCTGATGGTTCTATTGTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR GCA 90 bp ATGACAATAGAACCATCAGCTGCATTTGAAGCACGGATTCTTGGAGCCTGGAGTATTGATCACCCCAGCTaGAATTCAAGTTTGGCTTTT +
Preference number: 2 (lower is better)
Translates to: MTIEPSAAFEARILGAWSIDHPS*NSSLAF
Trigger: AAAAGCCAAACTTGAATTGCAGCTGGGGTGATCAAT...ACTCCAGGCTCCAAGAATCCGTGCTTCAAATGCAGCTGATGGTTCTATTGTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR CCA 90 bp ATGACAATAGAACCATCAGCTGCATTTGAAGCACGGATTCTTGGAGCCTGGAGTGTCATACACGGGTATTaGATAAATGGAATAGTGCCT +
Preference number: 2 (lower is better)
Translates to: MTIEPSAAFEARILGAWSVIHGY*INGIVP
Trigger: AGGCACTATTCCATTTATCCAATACCCGTGTATGAC...ACTCCAGGCTCCAAGAATCCGTGCTTCAAATGCAGCTGATGGTTCTATTGTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR TCA 90 bp GAGAAGTGTGATAACTGCTCTGTTCCCATTCCCTTTGCTGTAATTAGCACACGGCAAGAACTGGCACCTTaGATTGCTTTAACAATAAAG +
Preference number: 2 (lower is better)
Translates to: EKCDNCSVPIPFAVISTRQELAP*IALTIK
Trigger: CTTTATTGTTAAAGCAATTCAAGGTGCCAGTTCTTG...CCGTGTGCTAATTACAGCAAAGGGAATGGGAACAGAGCAGTTATCACACTTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR TCA 90 bp AGCAGAGAACACAGATGGATCGTGCTCTGTCTCTGTGATAATTACCAATCTCTTTTTTGGTGTGGCATCTaGGTATCTGCTAAAGCTATT +
Preference number: 2 (lower is better)
Translates to: SREHRWIVLCLCDNYQSLFWCGI*VSAKAI
Trigger: AATAGCTTTAGCAGATACTCAGATGCCACACCAAAA...AAGAGATTGGTAATTATCACAGAGACAGAGCACGATCCATCTGTGTTCTCTGCT
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR GCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCCGTTGTTTATGTTCTTaGTCAAGTCCTAATGTTGTT +
Preference number: 2 (lower is better)
Translates to: EAPGSKWHIIALWKQILIRCLCS*SSPNVV
Trigger: AACAACATTAGGACTTGAGCAAGAACATAAACAACG...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATACGTTGTTTATGTTCTTaGTCAAGTCCTAATGTTGTT +
Preference number: 2 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIRCLCS*SSPNVV
Trigger: AACAACATTAGGACTTGAGCAAGAACATAAACAACG...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGAGTGCTATCAAACCCTaGTTGCGTGTACAGTGTTTC +
Preference number: 2 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTSAIKP*LRVQCF
Trigger: GAAACACTGTACACGCAAGCAGGGTTTGATAGCACT...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR CAA 90 bp AGGCCACGACATGATCTGTTTACAGTTTTAATAACTGAAATGCTTTaGTTTGTCTGTTTAAAACAGCTCAGCTGGACTCCTCTGTCATCA +
Preference number: 2 (lower is better)
Translates to: RPRHDLFTVLITEML*FVCLKQLSWTPLSS
Trigger: TGATGACAGAGGAGTCCAGCTGAGCTGTTTTAAACAGACAAACAAAAGCATTTCAGTTATTAAAACTGTAAACAGATCATGTCGTGGCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR GCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGTGGGGTGCAAAACAATaGATGACTATGGGACAGATT +
Preference number: 2 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTWGAKQ*MTMGQI
Trigger: AATCTGTCCCATAGTCATGCATTGTTTTGCACCCCA...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR TCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGGTGCAAAACAATGCATaGCTATGGGACAGATTATGT +
Preference number: 2 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTVQNNA*LWDRLC
Trigger: ACATAATCTGTCCCATAGTCATGCATTGTTTTGCAC...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR GCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGAAAAACGCAGCTGTCTaGAAGTATTGTGACTGCTTT +
Preference number: 2 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTKNAAV*KYCDCF
Trigger: AAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTT...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGAAGTCTGAACAGCAATaGGAAAATCAGAATTTTCCT +
Preference number: 2 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTKSEQQ*ENQNFP
Trigger: AGGAAAATTCTGATTTTCCCATTGCTGTTCAGACTT...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR GCA 72 bp CCCATGCCACTGCCTGCCTGCTGCCACTCACTGCCATaGAGTGGAGAAGCCGGGAGCCAGCTCGCAGTCCCA +
Preference number: 3 (lower is better)
Translates to: PMPLPACCHSLP*SGEAGSQLAVP
Trigger: TGGGACTGCGAGCTGGCTCCCGGCTTCTCCACTGCATGGCAGTGAGTGGCAGCAGGCAGGCAGTGGCATGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR GCA 72 bp GCCATCCCATGCCACTGCCTGCCTGCTGCCACTCACTaGCATGCAGTGGAGAAGCCGGGAGCCAGCTCGCAG +
Preference number: 3 (lower is better)
Translates to: AIPCHCLPAATH*HAVEKPGASSQ
Trigger: CTGCGAGCTGGCTCCCGGCTTCTCCACTGCATGGCAGTGAGTGGCAGCAGGCAGGCAGTGGCATGGGATGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR GCA 72 bp CGTGGACAGCATCCCTGTAACTTCCATGCCCCTTTGTaGTTCTCCCTGCTCAGGCCCTTCCACCACACCCCC +
Preference number: 3 (lower is better)
Translates to: RGQHPCNFHAPL*FSLLRPFHHTP
Trigger: GGGGGTGTGGTGGAAGGGCCTGAGCAGGGAGAAGCACAAAGGGGCATGGAAGTTACAGGGATGCTGTCCACG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR GCA 72 bp ATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTaGCTGCTGCCACTCACTGCCATGCAGTGGAGAAGC +
Preference number: 3 (lower is better)
Translates to: MLFLTVPSHATA*LLPLTAMQWRS
Trigger: GCTTCTCCACTGCATGGCAGTGAGTGGCAGCAGGCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR GCA 72 bp CCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTaGCTGCCTGCTGCCACTCACTGCCATGCAGTGGAG +
Preference number: 3 (lower is better)
Translates to: PNVVPDCAIPCH*LPAATHCHAVE
Trigger: CTCCACTGCATGGCAGTGAGTGGCAGCAGGCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR TCA 72 bp GTTCGTCTTTTCTGTGACGCCACATCAGCTGGCTCCTaGCGAGCAGAGAACACAGATGGATCGTGCTCTGTC +
Preference number: 3 (lower is better)
Translates to: VRLFCDATSAGS*RAENTDGSCSV
Trigger: GACAGAGCACGATCCATCTGTGTTCTCTGCTCGTCAGGAGCCAGCTGATGTGGCGTCACAGAAAAGACGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR TCA 72 bp GGGGAATTACAGGCATATGTCATCAGACCCCGTTTATaGTGTGCTGGGCTCAAGCCCAGAGCTCCACTCCAC +
Preference number: 3 (lower is better)
Translates to: GELQAYVIRPRL*CAGLKPRAPLH
Trigger: GTGGAGTGGAGCTCTGGGCTTGAGCCCAGCACATCATAAACGGGGTCTGATGACATATGCCTGTAATTCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR GCA 72 bp GCCAACAGCACACAGGATGGAGCCTCATTTCAGTCCTaGCCACCAACACTCTTTGTGACACCTGAGAAGTGT +
Preference number: 3 (lower is better)
Translates to: ANSTQDGASFQS*PPTLFVTPEKC
Trigger: ACACTTCTCAGGTGTCACAAAGAGTGTTGGTGGGCAGGACTGAAATGAGGCTCCATCCTGTGTGCTGTTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR CAA 90 bp AGGTTCGTCTTTTCTGTGACGCCACATCAGCTGGCTCCTGACGAGCAGAGAACACTCTGGAAGCAGATATaGATCACCCCAGCTGCAATT +
Preference number: 3 (lower is better)
Translates to: RFVFSVTPHQLAPDEQRTLWKQI*ITPAAI
Trigger: AATTGCAGCTGGGGTGATCAATATCTGCTTCCAGAG...TGTTCTCTGCTCGTCAGGAGCCAGCTGATGTGGCGTCACAGAAAAGACGAACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR GCA 72 bp GTATTACAGGGATTCTGTTTTCTAGCGTGTACAGCGTaGGCTCTTCATAACGATGCTCCCCAGGAACGCCTG +
Preference number: 3 (lower is better)
Translates to: VLQGFCFLACTA*ALHNDAPQERL
Trigger: CAGGCGTTCCTGGGGAGCATCGTTATGAAGAGCGCACGCTGTACACGCTAGAAAACAGAATCCCTGTAATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CAA 90 bp GTGGACAGCATCCCTGTAACTTCCATGCCCCTTTGTGCTTCTCCCTGCTCAGGCTTGTTTTTGTTTCTTTaGGCACTCGGGAAAACACAG +
Preference number: 3 (lower is better)
Translates to: VDSIPVTSMPLCASPCSGLFLFL*ALGKTQ
Trigger: CTGTGTTTTCCCGAGTGCCAAAAGAAACAAAAACAA...GCCTGAGCAGGGAGAAGCACAAAGGGGCATGGAAGTTACAGGGATGCTGTCCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR CAA 90 bp GAGAAGTGTGATAACTGCTCTGTTCCCATTCCCTTTGCTGTAATTAGCACACGGAACTTCCATGCCCCTTaGTGCTTCTCCCTGCTCAGG +
Preference number: 3 (lower is better)
Translates to: EKCDNCSVPIPFAVISTRNFHAP*CFSLLR
Trigger: CCTGAGCAGGGAGAAGCACAAAGGGGCATGGAAGTT...CCGTGTGCTAATTACAGCAAAGGGAATGGGAACAGAGCAGTTATCACACTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR CCA 72 bp GTATTTAAAAATATATACTTCCGGCCGGGCAGGTGTTaGCACACGCCTTTAATCCCGGTACTTGGGAGGCAG +
Preference number: 3 (lower is better)
Translates to: VFKNIYFRPGRC*HTPLIPVLGRQ
Trigger: CTGCCTCCCAAGTACCGGGATTAAAGGCGTGTGCCAACACCTGCCCGGCCGGAAGTATATATTTTTAAATAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR CCA 72 bp CACATCAGCTGGCTCCTGACGAGCAGAGAACACAGATaGATCGTGCTCTGTCTCTGTGATAATTACCAATCT +
Preference number: 3 (lower is better)
Translates to: HISWLLTSREHR*IVLCLCDNYQS
Trigger: AGATTGGTAATTATCACAGAGACAGAGCACGATCCATCTGTGTTCTCTGCTCGTCAGGAGCCAGCTGATGTG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR CCA 72 bp GGTAGTGAGTTAAAAATCAGCCAACAGCACACAGGATaGAGCCTCATTTCAGTCCTGCCCACCAACACTCTT +
Preference number: 3 (lower is better)
Translates to: GSELKISQQHTG*SLISVLPTNTL
Trigger: AAGAGTGTTGGTGGGCAGGACTGAAATGAGGCTCCATCCTGTGTGCTGTTGGCTGATTTTTAACTCACTACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR CAA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGCCTTCACCCCAAGTGTaGTTCCTCATTAAGCAGGGA +
Preference number: 3 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEPSPQV*FLIKQG
Trigger: TCCCTGCTTAATGAGGAACAACACTTGGGGTGAAGG...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CAA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATACCTTCACCCCAAGTGTaGTTCCTCATTAAGCAGGGA +
Preference number: 3 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIPSPQV*FLIKQG
Trigger: TCCCTGCTTAATGAGGAACAACACTTGGGGTGAAGG...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CAA 90 bp GAGGATCTTGAATTTGAGGCCAGCCTGGGCTACACTGAGACCTTGTACCAACAAAGTCATACACGGGTATaGGATAAATGGAATAGTGCC +
Preference number: 3 (lower is better)
Translates to: EDLEFEASLGYTETLYQQSHTRV*DKWNSA
Trigger: GGCACTATTCCATTTATCCAATACCCGTGTATGACT...TTGTTGGTACAAGGTCTCAGTGTAGCCCAGGCTGGCCTCAAATTCAAGATCCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR CAA 90 bp AGGTTCGTCTTTTCTGTGACGCCACATCAGCTGGCTCCTGACGAGCAGAGAACAAGCTGCAATTCAAGTTaGGCTTTTGCCTTTTTGAAT +
Preference number: 3 (lower is better)
Translates to: RFVFSVTPHQLAPDEQRTSCNSS*AFAFLN
Trigger: ATTCAAAAAGGCAAAAGCCAAACTTGAATTGCAGCT...TGTTCTCTGCTCGTCAGGAGCCAGCTGATGTGGCGTCACAGAAAAGACGAACCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR TCA 72 bp GGATGCATTTCAGAATGCTCACTAATGCACCGTGCCTaGATGGGATTTAATGACACTGGAGTGAGACCTCAC +
Preference number: 3 (lower is better)
Translates to: GCISECSLMHRA*MGFNDTGVRPH
Trigger: GTGAGGTCTCACTCCAGTGTCATTAAATCCCATTCAGGCACGGTGCATTAGTGAGCATTCTGAAATGCATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR TCA 72 bp TTCTACTGTACCATTAAAACAGGTTCGTCTTTTCTGTaGCGCCACATCAGCTGGCTCCTGACGAGCAGAGAA +
Preference number: 3 (lower is better)
Translates to: FYCTIKTGSSFL*RHISWLLTSRE
Trigger: TTCTCTGCTCGTCAGGAGCCAGCTGATGTGGCGTCACAGAAAAGACGAACCTGTTTTAATGGTACAGTAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR TCA 72 bp GCATGCTATGAGCGCCGCACTCAAGAACTGGCACCTTaGATTGCTTTAACAATAAAGCTTTCCCAAGTGGCT +
Preference number: 3 (lower is better)
Translates to: ACYERRTQELAP*IALTIKLSQVA
Trigger: AGCCACTTGGGAAAGCTTTATTGTTAAAGCAATTCAAGGTGCCAGTTCTTGAGTGCGGCGCTCATAGCATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR CCA 72 bp CTGAGTGGTAACATGGCCATTTCCCTTACAAACCTTTaGAGACAGCTACCAGGGCTATCAGGAATGCAATTC +
Preference number: 3 (lower is better)
Translates to: LSGNMAISLTNL*RQLPGLSGMQF
Trigger: GAATTGCATTCCTGATAGCCCTGGTAGCTGTCTCCAAAGGTTTGTAAGGGAAATGGCCATGTTACCACTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR CAA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGGCTATCAAACCCTGCTaGCGTGTACAGTGTTTCAAT +
Preference number: 3 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEAIKPC*RVQCFN
Trigger: ATTGAAACACTGTACACGCAAGCAGGGTTTGATAGC...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR TCA 72 bp TGGTCCATGAACAGCAGCGCATGCCCAATCTTGACTTaGAAACCTACAATGAGATTCTCTTTGCTGTCCTGT +
Preference number: 3 (lower is better)
Translates to: WSMNSSACPILT*KPTMRFSLLSC
Trigger: ACAGGACAGCAAAGAGAATCTCATTGTAGGTTTTCAAGTCAAGATTGGGCATGCGCTGCTGTTCATGGACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR CCA 72 bp CTAGAGCGACCACTAACATTAGCCCTACATCTTAGATaGATGCATTTCAGAATGCTCACTAATGCACCGTGC +
Preference number: 3 (lower is better)
Translates to: LERPLTLALHLR*MHFRMLTNAPC
Trigger: GCACGGTGCATTAGTGAGCATTCTGAAATGCATCCATCTAAGATGTAGGGCTAATGTTAGTGGTCGCTCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR CCA 72 bp CCCCTGTTCACTATTCAAAACGTCTATATAGGTGTCTaGCCTCAAGGTGAGCACTGTATTACAGGGATTCTG +
Preference number: 3 (lower is better)
Translates to: PLFTIQNVYIGV*PQGEHCITGIL
Trigger: CAGAATCCCTGTAATACAGTGCTCACCTTGAGGCCAGACACCTATATAGACGTTTTGAATAGTGAACAGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR TCA 72 bp GTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTaGGACCCCAAGTCCATCAAAGTGTTGTTTGTTCAA +
Preference number: 3 (lower is better)
Translates to: VCKYCDCFQNRR*DPKSIKVLFVQ
Trigger: TTGAACAAACAACACTTTGATGGACTTGGGGTCTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR TCA 72 bp GAGCTCCACTCCACACACATTTGTTGGGCTAACAACTaGCCCAAATTCCCATGCTTTAATTGGAAACACCAA +
Preference number: 3 (lower is better)
Translates to: ELHSTHICWANN*PKFPCFNWKHQ
Trigger: TTGGTGTTTCCAATTAAAGCATGGGAATTTGGGTCAGTTGTTAGCCCAACAAATGTGTGTGGAGTGGAGCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR GCA 72 bp CCAACACTCTTTGTGACACCTGAGAAGTGTGATAACTaGTCTGTTCCCATTCCCTTTGCTGTAATTAGCACA +
Preference number: 3 (lower is better)
Translates to: PTLFVTPEKCDN*SVPIPFAVIST
Trigger: TGTGCTAATTACAGCAAAGGGAATGGGAACAGAGCAGTTATCACACTTCTCAGGTGTCACAAAGAGTGTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR CCA 72 bp TCCCACAAAAACTCACCCAGGATTGCCAATGCAATCTaGGTGACTCCTAACAACAAGTCCTTTCTGCATTTT +
Preference number: 3 (lower is better)
Translates to: SHKNSPRIANAI*VTPNNKSFLHF
Trigger: AAAATGCAGAAAGGACTTGTTGTTAGGAGTCACCCAGATTGCATTGGCAATCCTGGGTGAGTTTTTGTGGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR CAA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAGCTATCAAACCCTGCTaGCGTGTACAGTGTTTCAAT +
Preference number: 3 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLAIKPC*RVQCFN
Trigger: ATTGAAACACTGTACACGCAAGCAGGGTTTGATAGC...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CAA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATACCATCAAAGTGTTGTTaGTTCAAAGCAAAAAGCGAG +
Preference number: 3 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIPSKCC*FKAKSE
Trigger: CTCGCTTTTTGCTTTGAACAAACAACACTTTGATGG...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CAA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCGTCCTACTTTTATCATaGAAGTACGGATACGTAGCT +
Preference number: 3 (lower is better)
Translates to: EAPGSKWHIIALWKQILIVLLLS*KYGYVA
Trigger: AGCTACGTATCCGTACTTCAATGATAAAAGTAGGAC...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CAA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCACCATGTCACTGAGTTaGACTGTAATAATCCCTGAT +
Preference number: 3 (lower is better)
Translates to: EAPGSKWHIIALWKQILITMSLS*TVIIPD
Trigger: ATCAGGGATTATTACAGTCAAACTCAGTGACATGGT...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CAA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCTTGGCTTTTGCCTTTTaGAATACAACCAGTTCTCCT +
Preference number: 3 (lower is better)
Translates to: EAPGSKWHIIALWKQILILAFAF*NTTSSP
Trigger: AGGAGAACTGGTTGTATTCAAAAAGGCAAAAGCCAA...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR CCA 72 bp GCTGATGAGACATCCTCAAGTGACTTAGTGAAACTATaGAGCCCAAGTCATTTCCACAATAGTCATTCACTG +
Preference number: 3 (lower is better)
Translates to: ADETSSSDLVKL*SPSHFHNSHSL
Trigger: CAGTGAATGACTATTGTGGAAATGACTTGGGCTCCATAGTTTCACTAAGTCACTTGAGGATGTCTCATCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CAA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGAGGCATAACATGAAATaGCTCGTTATTCTAAAGCTG +
Preference number: 3 (lower is better)
Translates to: TKTQLSASIVTAFKTAGERHNMK*LVILKL
Trigger: CAGCTTTAGAATAACGAGCAATTTCATGTTATGCCT...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CAA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGCCTTCACCCCAAGTGTaGTTCCTCATTAAGCAGGGA +
Preference number: 3 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTPSPQV*FLIKQG
Trigger: TCCCTGCTTAATGAGGAACAACACTTGGGGTGAAGG...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CAA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTCCATCAAAGTGTTGTTaGTTCAAAGCAAAAAGCGAG +
Preference number: 3 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFPSKCC*FKAKSE
Trigger: CTCGCTTTTTGCTTTGAACAAACAACACTTTGATGG...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR TCA 72 bp GTCGGTTTTGTATTCATTTTAGTAACGGGTTTCATGTaGTTGTGCTGTCTCAACTACGGAGGAATGGATGAG +
Preference number: 3 (lower is better)
Translates to: VGFVFILVTGFM*LCCLNYGGMDE
Trigger: CTCATCCATTCCTCCGTAGTTGAGACAGCACAATCACATGAAACCCGTTACTAAAATGAATACAAAACCGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR TCA 72 bp ACAAAAACTCACCCAGGATTGCCAATGCAATCTGGGTaGCTCCTAACAACAAGTCCTTTCTGCATTTTAGAA +
Preference number: 3 (lower is better)
Translates to: TKTHPGLPMQSG*LLTTSPFCILE
Trigger: TTCTAAAATGCAGAAAGGACTTGTTGTTAGGAGTCACCCAGATTGCATTGGCAATCCTGGGTGAGTTTTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR-3UTR CAA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGGCTATCAAACCCTGCTaGCGTGTACAGTGTTTCAAT +
Preference number: 3 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTAIKPC*RVQCFN
Trigger: ATTGAAACACTGTACACGCAAGCAGGGTTTGATAGC...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR-3UTR CAA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGAGGCATAACATGAAATaGCTCGTTATTCTAAAGCTG +
Preference number: 3 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGRHNMK*LVILKL
Trigger: CAGCTTTAGAATAACGAGCAATTTCATGTTATGCCT...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR TCA 72 bp AATTATGTTAAGAAACACAGCGAAGTCCACGTGCTGTaGGGTTTCTACTGTACCATTAAAACAGGTTCGTCT +
Preference number: 3 (lower is better)
Translates to: NYVKKHSEVHVL*GFYCTIKTGSS
Trigger: AGACGAACCTGTTTTAATGGTACAGTAGAAACCTCACAGCACGTGGACTTCGCTGTGTTTCTTAACATAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR CCA 72 bp GACCTCACCACTTGGAATTGGGACATGATAGTAAAATaGGTTAATGTCCTACTTTTATCATTGAAGTACGGA +
Preference number: 3 (lower is better)
Translates to: DLTTWNWDMIVK*VNVLLLSLKYG
Trigger: TCCGTACTTCAATGATAAAAGTAGGACATTAACCCATTTTACTATCATGTCCCAATTCCAAGTGGTGAGGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR TCA 72 bp GCATCTGAGTATCTGCTAAAGCTATTTTCTAGGACATaGATCATTCAAACACTGAGTAGAAATCTAGAGCGA +
Preference number: 3 (lower is better)
Translates to: ASEYLLKLFSRT*IIQTLSRNLER
Trigger: TCGCTCTAGATTTCTACTCAGTGTTTGAATGATTCATGTCCTAGAAAATAGCTTTAGCAGATACTCAGATGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR TCA 72 bp GTATGTATATTTCTGCCACAAGCTTGTGACACAAGATaGGGTTATATAAAGTCCACGTGGCCTATAAAGTAT +
Preference number: 3 (lower is better)
Translates to: VCIFLPQACDTR*GYIKSTWPIKY
Trigger: ATACTTTATAGGCCACGTGGACTTTATATAACCTCATCTTGTGTCACAAGCTTGTGGCAGAAATATACATAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR GCA 72 bp ACAAAAATTATGTTAAGAAACACAGCGAAGTCCACGTaGTGTGAGGTTTCTACTGTACCATTAAAACAGGTT +
Preference number: 3 (lower is better)
Translates to: TKIMLRNTAKST*CEVSTVPLKQV
Trigger: AACCTGTTTTAATGGTACAGTAGAAACCTCACAGCACGTGGACTTCGCTGTGTTTCTTAACATAATTTTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
3UTR TCA 72 bp AGACATACCACAATCTATGACGCCACAAAATGCCTTTaGATTTGGTATTTTAGCAATGTTGTAGACATCAAA +
Preference number: 3 (lower is better)
Translates to: RHTTIYDATKCL*IWYFSNVVDIK
Trigger: TTTGATGTCTACAACATTGCTAAAATACCAAATTCAAAGGCATTTTGTGGCGTCATAGATTGTGGTATGTCT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR TCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGCAGCGCAGGACCGAGTaGACAGGTCAATGGCTGCAT +
Preference number: 4 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLQRRTE*TGQWLH
Trigger: ATGCAGCCATTGACCTGTTCACTCGGTCCTGCGCTG...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp GTGGACAGCATCCCTGTAACTTCCATGCCCCTTTGTGCTTCTCCCTGCTCAGGCGGGGCATCAAGTGGATaGCCCACAGTTCACCCGAAG +
Preference number: 4 (lower is better)
Translates to: VDSIPVTSMPLCASPCSGGASSG*PTVHPK
Trigger: CTTCGGGTGAACTGTGGGGCATCCACTTGATGCCCC...GCCTGAGCAGGGAGAAGCACAAAGGGGCATGGAAGTTACAGGGATGCTGTCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR CCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGCGAAGGTCAAGGCCTTaGTTTTGCCAGATGTTCTCC +
Preference number: 4 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLRRSRP*FCQMFS
Trigger: GGAGAACATCTGGCAAAACCAAGGCCTTGACCTTCG...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR CAA 72 bp GTACGTGGACAGCATCCCTGTAACTTCCATGCCCCTTaGTGCTTCTCCCTGCTCAGGCCCTTCCACCACACC +
Preference number: 4 (lower is better)
Translates to: VRGQHPCNFHAP*CFSLLRPFHHT
Trigger: GGTGTGGTGGAAGGGCCTGAGCAGGGAGAAGCACAAAGGGGCATGGAAGTTACAGGGATGCTGTCCACGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR TCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGACAGTAGCTCTGACATaGTGTCTGGGTTCTCCCAAT +
Preference number: 4 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLTVALT*CLGSPN
Trigger: ATTGGGAGAACCCAGACATCATGTCAGAGCTACTGT...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp AGGTTCGTCTTTTCTGTGACGCCACATCAGCTGGCTCCTGACGAGCAGAGAACAGTGTGGCTGTTGAACTaGAGCGCCCCCTTCAGGCCT +
Preference number: 4 (lower is better)
Translates to: RFVFSVTPHQLAPDEQRTVWLLN*SAPFRP
Trigger: AGGCCTGAAGGGGGCGCTGCAGTTCAACAGCCACAC...TGTTCTCTGCTCGTCAGGAGCCAGCTGATGTGGCGTCACAGAAAAGACGAACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR GCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGATGATGTTGCTGTTGTaGCGGTCTCCAATTCCCAAG +
Preference number: 4 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLMMLLL*RSPIPK
Trigger: CTTGGGAATTGGAGACCGGCACAACAGCAACATCAT...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGACTTCACCACACTGCTaGACCAATCAAACTCCAACT +
Preference number: 4 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLTSPHC*TNQTPT
Trigger: AGTTGGAGTTTGATTGGTTCAGCAGTGTGGTGAAGT...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp GTGGACAGCATCCCTGTAACTTCCATGCCCCTTTGTGCTTCTCCCTGCTCAGGCAGGTTTCCTAGTTGGTaGGCAGGATTCAGAGGGGAC +
Preference number: 4 (lower is better)
Translates to: VDSIPVTSMPLCASPCSGRFPSW*AGFRGD
Trigger: GTCCCCTCTGAATCCTGCTCACCAACTAGGAAACCT...GCCTGAGCAGGGAGAAGCACAAAGGGGCATGGAAGTTACAGGGATGCTGTCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR GCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGAGGGTAGACATACATTaGTCTGCTATGAGGCGAGTT +
Preference number: 4 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLRVDIH*SAMRRV
Trigger: AACTCGCCTCATAGCAGAGCAATGTATGTCTACCCT...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGCCAATTCAACCACAGTaGCCTTTTTGCAGAGGACAT +
Preference number: 4 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLPIQPQ*PFCRGH
Trigger: ATGTCCTCTGCAAAAAGGCCACTGTGGTTGAATTGG...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGGCACACAGTCATGATTaGTCTTCAGAGTGTACTTCT +
Preference number: 4 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLAHSHD*SSECTS
Trigger: AGAAGTACACTCTGAAGATCAATCATGACTGTGTGC...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGCTTATGTACTTGTACTaGCTCAGAGGGTACTTTTCC +
Preference number: 4 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLLMYLY*LRGYFS
Trigger: GGAAAAGTACCCTCTGAGTCAGTACAAGTACATAAG...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCTTCTCACCACCTCGATaGGACCCACACAGTCCCCAA +
Preference number: 4 (lower is better)
Translates to: LAQVLMLFLTVPSHATACFSPPR*DPHSPQ
Trigger: TTGGGGACTGTGTGGGTCTCATCGAGGTGGTGAGAA...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp GAGGATCTTGAATTTGAGGCCAGCCTGGGCTACACTGAGACCTTGTACCAACAAGCAGTGTGTGGCTGTTaGACTGCAGCGCCCCCTTCA +
Preference number: 4 (lower is better)
Translates to: EDLEFEASLGYTETLYQQAVCGC*TAAPPS
Trigger: TGAAGGGGGCGCTGCAGTTCAACAGCCACACACTGC...TTGTTGGTACAAGGTCTCAGTGTAGCCCAGGCTGGCCTCAAATTCAAGATCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR CCA 90 bp GTGGACAGCATCCCTGTAACTTCCATGCCCCTTTGTGCTTCTCCCTGCTCAGGCCCATCAGCATCAAGTTaGGCATCCTCCCCAGCATTA +
Preference number: 4 (lower is better)
Translates to: VDSIPVTSMPLCASPCSGPSASS*ASSPAL
Trigger: TAATGCTGGGGAGGATGCCCAACTTGATGCTGATGG...GCCTGAGCAGGGAGAAGCACAAAGGGGCATGGAAGTTACAGGGATGCTGTCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR TCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGATGATCTCATTGTTCTaGAACAGTAGCTCTGACATG +
Preference number: 4 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLMISLF*NSSSDM
Trigger: CATGTCAGAGCTACTGTTTCAGAACAATGAGATCAT...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGAAATTCTTCCCTTTCTaGTTCTTGGGTGACACTTAC +
Preference number: 4 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLKFFPF*FLGDTY
Trigger: GTAAGTGTCACCCAAGAAGCAGAAAGGGAAGAATTT...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGTATTCCAAAGCTTCTTaGTCAGTTTTGTCCAAGGCT +
Preference number: 4 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLYSKAS*SVLSKA
Trigger: AGCCTTGGACAAAACTGAGCAAGAAGCTTTGGAATA...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp GTGGACAGCATCCCTGTAACTTCCATGCCCCTTTGTGCTTCTCCCTGCTCAGGCTCTGGCACACAGTCATaGTTGATCTTCAGAGTGTAC +
Preference number: 4 (lower is better)
Translates to: VDSIPVTSMPLCASPCSGSGTQS*LIFRVY
Trigger: GTACACTCTGAAGATCAATCATGACTGTGTGCCAGA...GCCTGAGCAGGGAGAAGCACAAAGGGGCATGGAAGTTACAGGGATGCTGTCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR TCA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGTTCTTTATTTGGATTTaGCCCAGTAACACCAATAGG +
Preference number: 4 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLFFIWI*PSNTNR
Trigger: CCTATTGGTGTTACTGGGTCAAATCCAAATAAAGAA...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCGCAGTGTGTGGCTGTTaGACTGCAGCGCCCCCTTCA +
Preference number: 4 (lower is better)
Translates to: EAPGSKWHIIALWKQILIAVCGC*TAAPPS
Trigger: TGAAGGGGGCGCTGCAGTTCAACAGCCACACACTGC...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCGTGTGGCTGTTGAACTaGAGCGCCCCCTTCAGGCCT +
Preference number: 4 (lower is better)
Translates to: EAPGSKWHIIALWKQILIVWLLN*SAPFRP
Trigger: AGGCCTGAAGGGGGCGCTGCAGTTCAACAGCCACAC...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCCGTGGGGGCATCAAGTaGATGCCCCACAGTTCACCC +
Preference number: 4 (lower is better)
Translates to: EAPGSKWHIIALWKQILIRGGIK*MPHSSP
Trigger: GGGTGAACTGTGGGGCATCCACTTGATGCCCCCACG...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp GTGGACAGCATCCCTGTAACTTCCATGCCCCTTTGTGCTTCTCCCTGCTCAGGCGCACACAGTCATGATTaGTCTTCAGAGTGTACTTCT +
Preference number: 4 (lower is better)
Translates to: VDSIPVTSMPLCASPCSGAHSHD*SSECTS
Trigger: AGAAGTACACTCTGAAGATCAATCATGACTGTGTGC...GCCTGAGCAGGGAGAAGCACAAAGGGGCATGGAAGTTACAGGGATGCTGTCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR TCA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCATTTGCATGATGGTGTaGGAGTTTCTCACCACCTCG +
Preference number: 4 (lower is better)
Translates to: LAQVLMLFLTVPSHATACICMMV*EFLTTS
Trigger: CGAGGTGGTGAGAAACTCTCACACCATCATGCAAAT...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp GAGGATCTTGAATTTGAGGCCAGCCTGGGCTACACTGAGACCTTGTACCAACAATTTAACAGAGCAGATTaGAAGGCAAAGGCGCGCAGC +
Preference number: 4 (lower is better)
Translates to: EDLEFEASLGYTETLYQQFNRAD*KAKARS
Trigger: GCTGCGCGCCTTTGCCTTTCAATCTGCTCTGTTAAA...TTGTTGGTACAAGGTCTCAGTGTAGCCCAGGCTGGCCTCAAATTCAAGATCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR TCA 90 bp GTGGACAGCATCCCTGTAACTTCCATGCCCCTTTGTGCTTCTCCCTGCTCAGGCATGATCTCATTGTTCTaGAACAGTAGCTCTGACATG +
Preference number: 4 (lower is better)
Translates to: VDSIPVTSMPLCASPCSGMISLF*NSSSDM
Trigger: CATGTCAGAGCTACTGTTTCAGAACAATGAGATCAT...GCCTGAGCAGGGAGAAGCACAAAGGGGCATGGAAGTTACAGGGATGCTGTCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR GCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTGGGGCATCAAGTGGATaGCCCACAGTTCACCCGAAG +
Preference number: 4 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFGASSG*PTVHPK
Trigger: CTTCGGGTGAACTGTGGGGCATCCACTTGATGCCCC...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCACACAGAGTTTCAGCTaGTCAGAGGACAACAACATG +
Preference number: 4 (lower is better)
Translates to: LAQVLMLFLTVPSHATACTQSFS*SEDNNM
Trigger: CATGTTGTTGTCCTCTGAGCAGCTGAAACTCTGTGT...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAGTGTGGCTGTTGAACTaGAGCGCCCCCTTCAGGCCT +
Preference number: 4 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLVWLLN*SAPFRP
Trigger: AGGCCTGAAGGGGGCGCTGCAGTTCAACAGCCACAC...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCGAACAGGTCAATGGCTaGATCATATATCTCGCCCTT +
Preference number: 4 (lower is better)
Translates to: LAQVLMLFLTVPSHATACEQVNG*IIYLAL
Trigger: AAGGGCGAGATATATGATGCAGCCATTGACCTGTTC...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCCAGTTCAAAGCATGCTaGTTGATGGTGTGGAAGATC +
Preference number: 4 (lower is better)
Translates to: LAQVLMLFLTVPSHATACQFKAC*LMVWKI
Trigger: GATCTTCCACACCATCAAGCAGCATGCTTTGAACTG...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGCGTGGGGGCATCAAGTaGATGCCCCACAGTTCACCC +
Preference number: 4 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGRGGIK*MPHSSP
Trigger: GGGTGAACTGTGGGGCATCCACTTGATGCCCCCACG...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp GAGGATCTTGAATTTGAGGCCAGCCTGGGCTACACTGAGACCTTGTACCAACAAGTGCTTTGGCAGTTCTaGGGAAGACTCGACATTTGG +
Preference number: 4 (lower is better)
Translates to: EDLEFEASLGYTETLYQQVLWQF*GRLDIW
Trigger: CCAAATGTCGAGTCTTCCCCAGAACTGCCAAAGCAC...TTGTTGGTACAAGGTCTCAGTGTAGCCCAGGCTGGCCTCAAATTCAAGATCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR CCA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGCATTCATGTAGGGTGTaGCTGTGGAGATGCGCCTGG +
Preference number: 4 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEHSCRV*LWRCAW
Trigger: CCAGGCGCATCTCCACAGCCACACCCTACATGAATG...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCGATCACAGACATGTCTaGAAACTTCACCACACTGCT +
Preference number: 4 (lower is better)
Translates to: LAQVLMLFLTVPSHATACDHRHV*KLHHTA
Trigger: AGCAGTGTGGTGAAGTTTCCAGACATGTCTGTGATC...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR CAA 72 bp GAGCACGTTGTTTATGTTCTTGCTCAAGTCCTAATGTaGTTCCTGACTGTGCCATCCCATGCCACTGCCTGC +
Preference number: 4 (lower is better)
Translates to: EHVVYVLAQVLM*FLTVPSHATAC
Trigger: GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAGAACATAAACAACGTGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp GAGAAGTGTGATAACTGCTCTGTTCCCATTCCCTTTGCTGTAATTAGCACACGGTACATTGCTCTGCTATaGGGCGAGTTGAGATCCCGC +
Preference number: 4 (lower is better)
Translates to: EKCDNCSVPIPFAVISTRYIALL*GELRSR
Trigger: GCGGGATCTCAACTCGCCTCATAGCAGAGCAATGTA...CCGTGTGCTAATTACAGCAAAGGGAATGGGAACAGAGCAGTTATCACACTTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR TCA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGTACATTGCTCTGCTATaGGGCGAGTTGAGATCCCGC +
Preference number: 4 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEYIALL*GELRSR
Trigger: GCGGGATCTCAACTCGCCTCATAGCAGAGCAATGTA...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCGCACACAGTCATGATTaGTCTTCAGAGTGTACTTCT +
Preference number: 4 (lower is better)
Translates to: LAQVLMLFLTVPSHATACAHSHD*SSECTS
Trigger: AGAAGTACACTCTGAAGATCAATCATGACTGTGTGC...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp AGGTTCGTCTTTTCTGTGACGCCACATCAGCTGGCTCCTGACGAGCAGAGAACACTTATGTACTTGTACTaGCTCAGAGGGTACTTTTCC +
Preference number: 4 (lower is better)
Translates to: RFVFSVTPHQLAPDEQRTLMYLY*LRGYFS
Trigger: GGAAAAGTACCCTCTGAGTCAGTACAAGTACATAAG...TGTTCTCTGCTCGTCAGGAGCCAGCTGATGTGGCGTCACAGAAAAGACGAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR TCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCAGGTTTCCTAGTTGGTaGGCAGGATTCAGAGGGGAC +
Preference number: 4 (lower is better)
Translates to: EAPGSKWHIIALWKQILIRFPSW*AGFRGD
Trigger: GTCCCCTCTGAATCCTGCTCACCAACTAGGAAACCT...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTACAGCGCAGGACCGAGTaGACAGGTCAATGGCTGCAT +
Preference number: 4 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLQRRTE*TGQWLH
Trigger: ATGCAGCCATTGACCTGTTCACTCGGTCCTGCGCTG...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAGTGTGGCTGTGGAGATaGGCCTGGAGTATGACGGCA +
Preference number: 4 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLVWLWR*AWSMTA
Trigger: TGCCGTCATACTCCAGGCGCATCTCCACAGCCACAC...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp AGGTTCGTCTTTTCTGTGACGCCACATCAGCTGGCTCCTGACGAGCAGAGAACATCAAGGCCTTGGTTTTaGCAGATGTTCTCCATGATT +
Preference number: 4 (lower is better)
Translates to: RFVFSVTPHQLAPDEQRTSRPWF*QMFSMI
Trigger: AATCATGGAGAACATCTGGCAAAACCAAGGCCTTGA...TGTTCTCTGCTCGTCAGGAGCCAGCTGATGTGGCGTCACAGAAAAGACGAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR CCA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCAGCAATGACTTGCTCTaGCACACAGTCATGATTGAT +
Preference number: 4 (lower is better)
Translates to: LAQVLMLFLTVPSHATACSNDLL*HTVMID
Trigger: ATCAATCATGACTGTGTGCCAGAGCAAGTCATTGCT...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTCATTCATGTAGGGTGTaGCTGTGGAGATGCGCCTGG +
Preference number: 4 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFHSCRV*LWRCAW
Trigger: CCAGGCGCATCTCCACAGCCACACCCTACATGAATG...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATATCGTCTTGCAGAAGCTaGTGGAGAGGGTATTTCCTG +
Preference number: 4 (lower is better)
Translates to: LSLIYRPREKLTMLLPTISSCRS*WRGYFL
Trigger: CAGGAAATACCCTCTCCATCAGCTTCTGCAAGACGA...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCTTTCTGCTTCTTGGGTaGCACTTACGAAAATGTAAG +
Preference number: 4 (lower is better)
Translates to: LAQVLMLFLTVPSHATACFLLLG*HLRKCK
Trigger: CTTACATTTTCGTAAGTGTCACCCAAGAAGCAGAAA...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTTACATTGCTCTGCTATaGGGCGAGTTGAGATCCCGC +
Preference number: 4 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFYIALL*GELRSR
Trigger: GCGGGATCTCAACTCGCCTCATAGCAGAGCAATGTA...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCGAACAAGGTACTCTTTaGGTGTTCACATTGTCACAT +
Preference number: 4 (lower is better)
Translates to: LAQVLMLFLTVPSHATACEQGTL*VFTLSH
Trigger: ATGTGACAATGTGAACACTCAAAGAGTACCTTGTTC...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp GAGAAGTGTGATAACTGCTCTGTTCCCATTCCCTTTGCTGTAATTAGCACACGGGACACTCTTCAAGCCTaGGGTTTCCTAGTTGGTGAG +
Preference number: 4 (lower is better)
Translates to: EKCDNCSVPIPFAVISTRDTLQA*GFLVGE
Trigger: CTCACCAACTAGGAAACCTCAGGCTTGAAGAGTGTC...CCGTGTGCTAATTACAGCAAAGGGAATGGGAACAGAGCAGTTATCACACTTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR TCA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGGACACTCTTCAAGCCTaGGGTTTCCTAGTTGGTGAG +
Preference number: 4 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEDTLQA*GFLVGE
Trigger: CTCACCAACTAGGAAACCTCAGGCTTGAAGAGTGTC...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTATTCTCACCACCTCGATaGGACCCACACAGTCCCCAA +
Preference number: 4 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLFSPPR*DPHSPQ
Trigger: TTGGGGACTGTGTGGGTCTCATCGAGGTGGTGAGAA...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATATTGTCCTTGAGCCATTaGTGCAGTGTGTGGCTGTTG +
Preference number: 4 (lower is better)
Translates to: LSLIYRPREKLTMLLPTILSLSH*CSVWLL
Trigger: CAACAGCCACACACTGCATCAATGGCTCAAGGACAA...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGTTGTCCTTGAGCCATTaGTGCAGTGTGTGGCTGTTG +
Preference number: 4 (lower is better)
Translates to: TKTQLSASIVTAFKTAGELSLSH*CSVWLL
Trigger: CAACAGCCACACACTGCATCAATGGCTCAAGGACAA...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACCAGCGCAGGACCGAGTaGACAGGTCAATGGCTGCAT +
Preference number: 4 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHQRRTE*TGQWLH
Trigger: ATGCAGCCATTGACCTGTTCACTCGGTCCTGCGCTG...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATACGTCATCTTTCACCATaGTGTTGCTGTTGTGCCGGT +
Preference number: 4 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIRHLSP*CCCCAG
Trigger: ACCGGCACAACAGCAACATCATGGTGAAAGATGACG...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACGTGTGGCTGTGGAGATaGGCCTGGAGTATGACGGCA +
Preference number: 4 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHVWLWR*AWSMTA
Trigger: TGCCGTCATACTCCAGGCGCATCTCCACAGCCACAC...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp GAGGATCTTGAATTTGAGGCCAGCCTGGGCTACACTGAGACCTTGTACCAACAACAGTTCAAAGCATGCTaGTTGATGGTGTGGAAGATC +
Preference number: 4 (lower is better)
Translates to: EDLEFEASLGYTETLYQQQFKAC*LMVWKI
Trigger: GATCTTCCACACCATCAAGCAGCATGCTTTGAACTG...TTGTTGGTACAAGGTCTCAGTGTAGCCCAGGCTGGCCTCAAATTCAAGATCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR CCA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGGTGCTTTGGCAGTTCTaGGGAAGACTCGACATTTGG +
Preference number: 4 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEVLWQF*GRLDIW
Trigger: CCAAATGTCGAGTCTTCCCCAGAACTGCCAAAGCAC...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATACCATCAGCATCAAGTTaGGCATCCTCCCCAGCATTA +
Preference number: 4 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIPSASS*ASSPAL
Trigger: TAATGCTGGGGAGGATGCCCAACTTGATGCTGATGG...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATACGAAGGTCAAGGCCTTaGTTTTGCCAGATGTTCTCC +
Preference number: 4 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIRRSRP*FCQMFS
Trigger: GGAGAACATCTGGCAAAACCAAGGCCTTGACCTTCG...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCCGAAGGTCAAGGCCTTaGTTTTGCCAGATGTTCTCC +
Preference number: 4 (lower is better)
Translates to: EAPGSKWHIIALWKQILIRRSRP*FCQMFS
Trigger: GGAGAACATCTGGCAAAACCAAGGCCTTGACCTTCG...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCAGAATATACTTGCCCTaGTATTCTAAGACACAGAGT +
Preference number: 4 (lower is better)
Translates to: LAQVLMLFLTVPSHATACRIYLP*YSKTQS
Trigger: ACTCTGTGTCTTAGAATATCAGGGCAAGTATATTCT...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTTTTAACAGAGCAGATTaGAAGGCAAAGGCGCGCAGC +
Preference number: 4 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFFNRAD*KAKARS
Trigger: GCTGCGCGCCTTTGCCTTTCAATCTGCTCTGTTAAA...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
47% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCTTCTTTATTTGGATTTaGCCCAGTAACACCAATAGG +
Preference number: 4 (lower is better)
Translates to: LAQVLMLFLTVPSHATACFFIWI*PSNTNR
Trigger: CCTATTGGTGTTACTGGGTCAAATCCAAATAAAGAA...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTCCTGCAAAGCATCCATaGAGTCTGGCTGTCTCATCT +
Preference number: 4 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFPAKHP*SLAVSS
Trigger: AGATGAGACAGCCAGACTTCATGGATGCTTTGCAGG...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGATTTGCATGATGGTGTaGGAGTTTCTCACCACCTCG +
Preference number: 4 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEICMMV*EFLTTS
Trigger: CGAGGTGGTGAGAAACTCTCACACCATCATGCAAAT...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGGTCGTCCATCCACCATaGTGTGCATCATTCATTTGC +
Preference number: 4 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEVVHPP*CASFIC
Trigger: GCAAATGAATGATGCACATCATGGTGGATGGACGAC...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGGTTGTAGATGTGCTTTaGCAGTTCTGGGGAAGACTC +
Preference number: 4 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEVVDVL*QFWGRL
Trigger: GAGTCTTCCCCAGAACTGCCAAAGCACATCTACAAC...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp ATGACAATAGAACCATCAGCTGCATTTGAAGCACGGATTCTTGGAGCCTGGAGTCAAACTCTCTGGTCTTaGTGTACTCTTGTGCTCCCT +
Preference number: 4 (lower is better)
Translates to: MTIEPSAAFEARILGAWSQTLWS*CTLVLP
Trigger: AGGGAGCACAAGAGTACACCAAGACCAGAGAGTTTG...ACTCCAGGCTCCAAGAATCCGTGCTTCAAATGCAGCTGATGGTTCTATTGTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR CCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCCAAACTCTCTGGTCTTaGTGTACTCTTGTGCTCCCT +
Preference number: 4 (lower is better)
Translates to: EAPGSKWHIIALWKQILIQTLWS*CTLVLP
Trigger: AGGGAGCACAAGAGTACACCAAGACCAGAGAGTTTG...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATACAAACTCTCTGGTCTTaGTGTACTCTTGTGCTCCCT +
Preference number: 4 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIQTLWS*CTLVLP
Trigger: AGGGAGCACAAGAGTACACCAAGACCAGAGAGTTTG...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGTCGTCTTGCAGAAGCTaGTGGAGAGGGTATTTCCTG +
Preference number: 4 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGSSCRS*WRGYFL
Trigger: CAGGAAATACCCTCTCCATCAGCTTCTGCAAGACGA...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTATTTAACAGAGCAGATTaGAAGGCAAAGGCGCGCAGC +
Preference number: 4 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLFNRAD*KAKARS
Trigger: GCTGCGCGCCTTTGCCTTTCAATCTGCTCTGTTAAA...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp AGCAGAGAACACAGATGGATCGTGCTCTGTCTCTGTGATAATTACCAATCTCTTCTGTATGGGAGTAACTaGATCCAGCTTCTCGGGACA +
Preference number: 4 (lower is better)
Translates to: SREHRWIVLCLCDNYQSLLYGSN*IQLLGT
Trigger: TGTCCCGAGAAGCTGGATTCAGTTACTCCCATACAG...AAGAGATTGGTAATTATCACAGAGACAGAGCACGATCCATCTGTGTTCTCTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR TCA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGCTGTATGGGAGTAACTaGATCCAGCTTCTCGGGACA +
Preference number: 4 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGLYGSN*IQLLGT
Trigger: TGTCCCGAGAAGCTGGATTCAGTTACTCCCATACAG...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTATTGTCCTTGAGCCATTaGTGCAGTGTGTGGCTGTTG +
Preference number: 4 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLLSLSH*CSVWLL
Trigger: CAACAGCCACACACTGCATCAATGGCTCAAGGACAA...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTACGTCATCTTTCACCATaGTGTTGCTGTTGTGCCGGT +
Preference number: 4 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLRHLSP*CCCCAG
Trigger: ACCGGCACAACAGCAACATCATGGTGAAAGATGACG...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp ATGACAATAGAACCATCAGCTGCATTTGAAGCACGGATTCTTGGAGCCTGGAGTTCAAAGCATGCTGCTTaGTGGTGTGGAAGATCCAAT +
Preference number: 4 (lower is better)
Translates to: MTIEPSAAFEARILGAWSSKHAA*WCGRSN
Trigger: ATTGGATCTTCCACACCATCAAGCAGCATGCTTTGA...ACTCCAGGCTCCAAGAATCCGTGCTTCAAATGCAGCTGATGGTTCTATTGTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR GCA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCCTGACAGTCTTATTGTaGATCTCAGATTTTAAATGC +
Preference number: 4 (lower is better)
Translates to: LAQVLMLFLTVPSHATACLTVLL*ISDFKC
Trigger: GCATTTAAAATCTGAGATGCACAATAAGACTGTCAG...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTGTTGTAGATGTGCTTTaGCAGTTCTGGGGAAGACTC +
Preference number: 4 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFVVDVL*QFWGRL
Trigger: GAGTCTTCCCCAGAACTGCCAAAGCACATCTACAAC...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCGATCACAGACATGTCTaGAAACTTCACCACACTGCT +
Preference number: 4 (lower is better)
Translates to: EAPGSKWHIIALWKQILIDHRHV*KLHHTA
Trigger: AGCAGTGTGGTGAAGTTTCCAGACATGTCTGTGATC...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp GAGAAGTGTGATAACTGCTCTGTTCCCATTCCCTTTGCTGTAATTAGCACACGGAGCATCCATGAAGTCTaGCTGTCTCATCTGTTCAAC +
Preference number: 4 (lower is better)
Translates to: EKCDNCSVPIPFAVISTRSIHEV*LSHLFN
Trigger: GTTGAACAGATGAGACAGCCAGACTTCATGGATGCT...CCGTGTGCTAATTACAGCAAAGGGAATGGGAACAGAGCAGTTATCACACTTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR CCA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGAGCATCCATGAAGTCTaGCTGTCTCATCTGTTCAAC +
Preference number: 4 (lower is better)
Translates to: TKTQLSASIVTAFKTAGESIHEV*LSHLFN
Trigger: GTTGAACAGATGAGACAGCCAGACTTCATGGATGCT...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCCCAATTCAACCACAGTaGCCTTTTTGCAGAGGACAT +
Preference number: 4 (lower is better)
Translates to: EAPGSKWHIIALWKQILIPIQPQ*PFCRGH
Trigger: ATGTCCTCTGCAAAAAGGCCACTGTGGTTGAATTGG...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGCCAATTCAACCACAGTaGCCTTTTTGCAGAGGACAT +
Preference number: 4 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEPIQPQ*PFCRGH
Trigger: ATGTCCTCTGCAAAAAGGCCACTGTGGTTGAATTGG...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTCCACACAGTCCCCAATaGATAGACAGCCATAAGGTA +
Preference number: 4 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFPHSPQ*IDSHKV
Trigger: TACCTTATGGCTGTCTATCCATTGGGGACTGTGTGG...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCCTGTGTCAACACAAATaGCACACGTTCCCGCTTATA +
Preference number: 4 (lower is better)
Translates to: EAPGSKWHIIALWKQILILCQHK*HTFPLI
Trigger: TATAAGCGGGAACGTGTGCCATTTGTGTTGACACAG...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACCCTGCAAAGCATCCATaGAGTCTGGCTGTCTCATCT +
Preference number: 4 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHPAKHP*SLAVSS
Trigger: AGATGAGACAGCCAGACTTCATGGATGCTTTGCAGG...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACGACACTCTTCAAGCCTaGGGTTTCCTAGTTGGTGAG +
Preference number: 4 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHDTLQA*GFLVGE
Trigger: CTCACCAACTAGGAAACCTCAGGCTTGAAGAGTGTC...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACCGTCATCTTTCACCATaGTGTTGCTGTTGTGCCGGT +
Preference number: 4 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHRHLSP*CCCCAG
Trigger: ACCGGCACAACAGCAACATCATGGTGAAAGATGACG...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAGTCGTCCATCCACCATaGTGTGCATCATTCATTTGC +
Preference number: 4 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLVVHPP*CASFIC
Trigger: GCAAATGAATGATGCACATCATGGTGGATGGACGAC...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTTCAAAGCATGCTGCTTaGTGGTGTGGAAGATCCAAT +
Preference number: 4 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFSKHAA*WCGRSN
Trigger: ATTGGATCTTCCACACCATCAAGCAGCATGCTTTGA...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTGAACAGGTCAATGGCTaGATCATATATCTCGCCCTT +
Preference number: 4 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFEQVNG*IIYLAL
Trigger: AAGGGCGAGATATATGATGCAGCCATTGACCTGTTC...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAATGATGTTGCTGTTGTaGCGGTCTCCAATTCCCAAG +
Preference number: 4 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLMMLLL*RSPIPK
Trigger: CTTGGGAATTGGAGACCGGCACAACAGCAACATCAT...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATATCCCTTTCTGCTTCTTaGGTGACACTTACGAAAATG +
Preference number: 4 (lower is better)
Translates to: LSLIYRPREKLTMLLPTISLSAS*VTLTKM
Trigger: CATTTTCGTAAGTGTCACCCAAGAAGCAGAAAGGGA...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp AGCAGAGAACACAGATGGATCGTGCTCTGTCTCTGTGATAATTACCAATCTCTTGTTGTAGATGTGCTTTaGCAGTTCTGGGGAAGACTC +
Preference number: 4 (lower is better)
Translates to: SREHRWIVLCLCDNYQSLVVDVL*QFWGRL
Trigger: GAGTCTTCCCCAGAACTGCCAAAGCACATCTACAAC...AAGAGATTGGTAATTATCACAGAGACAGAGCACGATCCATCTGTGTTCTCTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR CCA 90 bp ATGACAATAGAACCATCAGCTGCATTTGAAGCACGGATTCTTGGAGCCTGGAGTAGCAATGACTTGCTCTaGCACACAGTCATGATTGAT +
Preference number: 4 (lower is better)
Translates to: MTIEPSAAFEARILGAWSSNDLL*HTVMID
Trigger: ATCAATCATGACTGTGTGCCAGAGCAAGTCATTGCT...ACTCCAGGCTCCAAGAATCCGTGCTTCAAATGCAGCTGATGGTTCTATTGTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR CCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCAGCAATGACTTGCTCTaGCACACAGTCATGATTGAT +
Preference number: 4 (lower is better)
Translates to: EAPGSKWHIIALWKQILISNDLL*HTVMID
Trigger: ATCAATCATGACTGTGTGCCAGAGCAAGTCATTGCT...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp GAGAAGTGTGATAACTGCTCTGTTCCCATTCCCTTTGCTGTAATTAGCACACGGAGTATAGGCTTTCTTTaGCCATCAGCATCAAGTTGG +
Preference number: 4 (lower is better)
Translates to: EKCDNCSVPIPFAVISTRSIGFL*PSASSW
Trigger: CCAACTTGATGCTGATGGCCAAAGAAAGCCTATACT...CCGTGTGCTAATTACAGCAAAGGGAATGGGAACAGAGCAGTTATCACACTTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR TCA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGTTTCTGCTTCTTGGGTaGCACTTACGAAAATGTAAG +
Preference number: 4 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEFLLLG*HLRKCK
Trigger: CTTACATTTTCGTAAGTGTCACCCAAGAAGCAGAAA...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCAACCAATTTCTCGATTaGGGATCTTTTCTTCACGGT +
Preference number: 4 (lower is better)
Translates to: EAPGSKWHIIALWKQILINQFLD*GSFLHG
Trigger: ACCGTGAAGAAAAGATCCTCAATCGAGAAATTGGTT...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTATCTGGCACACAGTCATaGTTGATCTTCAGAGTGTAC +
Preference number: 4 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLSGTQS*LIFRVY
Trigger: GTACACTCTGAAGATCAATCATGACTGTGTGCCAGA...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGTCTGGCACACAGTCATaGTTGATCTTCAGAGTGTAC +
Preference number: 4 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGSGTQS*LIFRVY
Trigger: GTACACTCTGAAGATCAATCATGACTGTGTGCCAGA...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp ATGACAATAGAACCATCAGCTGCATTTGAAGCACGGATTCTTGGAGCCTGGAGTGAACAAGGTACTCTTTaGGTGTTCACATTGTCACAT +
Preference number: 4 (lower is better)
Translates to: MTIEPSAAFEARILGAWSEQGTL*VFTLSH
Trigger: ATGTGACAATGTGAACACTCAAAGAGTACCTTGTTC...ACTCCAGGCTCCAAGAATCCGTGCTTCAAATGCAGCTGATGGTTCTATTGTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR TCA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGACTTCACCACACTGCTaGACCAATCAAACTCCAACT +
Preference number: 4 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGTSPHC*TNQTPT
Trigger: AGTTGGAGTTTGATTGGTTCAGCAGTGTGGTGAAGT...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACACAGTAGCTCTGACATaGTGTCTGGGTTCTCCCAAT +
Preference number: 4 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHTVALT*CLGSPN
Trigger: ATTGGGAGAACCCAGACATCATGTCAGAGCTACTGT...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATAATGATCTCATTGTTCTaGAACAGTAGCTCTGACATG +
Preference number: 4 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIMISLF*NSSSDM
Trigger: CATGTCAGAGCTACTGTTTCAGAACAATGAGATCAT...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGTCAAAGCATGCTGCTTaGTGGTGTGGAAGATCCAAT +
Preference number: 4 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGSKHAA*WCGRSN
Trigger: ATTGGATCTTCCACACCATCAAGCAGCATGCTTTGA...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAACACAGAGTTTCAGCTaGTCAGAGGACAACAACATG +
Preference number: 4 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLTQSFS*SEDNNM
Trigger: CATGTTGTTGTCCTCTGAGCAGCTGAAACTCTGTGT...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTTCAAGGCCTTGGTTTTaGCAGATGTTCTCCATGATT +
Preference number: 4 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFSRPWF*QMFSMI
Trigger: AATCATGGAGAACATCTGGCAAAACCAAGGCCTTGA...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATATTCCTTCGAAAGTCTTaGACTTCTGGATCTTTAACC +
Preference number: 4 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIFLRKS*TSGSLT
Trigger: GGTTAAAGATCCAGAAGTCCAAGACTTTCGAAGGAA...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTAGTATAGGCTTTCTTTaGCCATCAGCATCAAGTTGG +
Preference number: 4 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFSIGFL*PSASSW
Trigger: CCAACTTGATGCTGATGGCCAAAGAAAGCCTATACT...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp AGCAGAGAACACAGATGGATCGTGCTCTGTCTCTGTGATAATTACCAATCTCTTGATCACAGACATGTCTaGAAACTTCACCACACTGCT +
Preference number: 4 (lower is better)
Translates to: SREHRWIVLCLCDNYQSLDHRHV*KLHHTA
Trigger: AGCAGTGTGGTGAAGTTTCCAGACATGTCTGTGATC...AAGAGATTGGTAATTATCACAGAGACAGAGCACGATCCATCTGTGTTCTCTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR CCA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGAGCATCCATGAAGTCTaGCTGTCTCATCTGTTCAAC +
Preference number: 4 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGSIHEV*LSHLFN
Trigger: GTTGAACAGATGAGACAGCCAGACTTCATGGATGCT...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTACTTATGTACTTGTACTaGCTCAGAGGGTACTTTTCC +
Preference number: 4 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLLMYLY*LRGYFS
Trigger: GGAAAAGTACCCTCTGAGTCAGTACAAGTACATAAG...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTGAACAAGGTACTCTTTaGGTGTTCACATTGTCACAT +
Preference number: 4 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFEQGTL*VFTLSH
Trigger: ATGTGACAATGTGAACACTCAAAGAGTACCTTGTTC...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACACTTCACCACACTGCTaGACCAATCAAACTCCAACT +
Preference number: 4 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHTSPHC*TNQTPT
Trigger: AGTTGGAGTTTGATTGGTTCAGCAGTGTGGTGAAGT...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGCCTGCAAAGCATCCATaGAGTCTGGCTGTCTCATCT +
Preference number: 4 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTPAKHP*SLAVSS
Trigger: AGATGAGACAGCCAGACTTCATGGATGCTTTGCAGG...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTATCAAGGCCTTGGTTTTaGCAGATGTTCTCCATGATT +
Preference number: 4 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLSRPWF*QMFSMI
Trigger: AATCATGGAGAACATCTGGCAAAACCAAGGCCTTGA...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGTCACTATCATTCCATTaGGGAGTAAACATTCCACTA +
Preference number: 4 (lower is better)
Translates to: TKTQLSASIVTAFKTAGESLSFH*GVNIPL
Trigger: TAGTGGAATGTTTACTCCCCAATGGAATGATAGTGA...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATAATCAAATTCACACACTaGCATGCCAATAACAAAACC +
Preference number: 4 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIIKFTH*HANNKT
Trigger: GGTTTTGTTATTGGCATGCCAGTGTGTGAATTTGAT...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTTTCCTTCGAAAGTCTTaGACTTCTGGATCTTTAACC +
Preference number: 4 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFFLRKS*TSGSLT
Trigger: GGTTAAAGATCCAGAAGTCCAAGACTTTCGAAGGAA...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
42% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGGTGCTTTGGCAGTTCTaGGGAAGACTCGACATTTGG +
Preference number: 4 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTVLWQF*GRLDIW
Trigger: CCAAATGTCGAGTCTTCCCCAGAACTGCCAAAGCAC...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGCCATCAGCATCAAGTTaGGCATCCTCCCCAGCATTA +
Preference number: 4 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTPSASS*ASSPAL
Trigger: TAATGCTGGGGAGGATGCCCAACTTGATGCTGATGG...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACCTGTGTCAACACAAATaGCACACGTTCCCGCTTATA +
Preference number: 4 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHLCQHK*HTFPLI
Trigger: TATAAGCGGGAACGTGTGCCATTTGTGTTGACACAG...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTCCCAAATCACCACTATaGTTTGTCCTTTATCTAACT +
Preference number: 4 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFPKSPL*FVLYLT
Trigger: AGTTAGATAAAGGACAAATCATAGTGGTGATTTGGG...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGGTCGTCCATCCACCATaGTGTGCATCATTCATTTGC +
Preference number: 4 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTVVHPP*CASFIC
Trigger: GCAAATGAATGATGCACATCATGGTGGATGGACGAC...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGCTTTCAGAATATACTTaGCCTGATATTCTAAGACAC +
Preference number: 4 (lower is better)
Translates to: TKTQLSASIVTAFKTAGELSEYT*PDILRH
Trigger: GTGTCTTAGAATATCAGGGCAAGTATATTCTGAAAG...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCCTTTCAGAATATACTTaGCCTGATATTCTAAGACAC +
Preference number: 4 (lower is better)
Translates to: EAPGSKWHIIALWKQILILSEYT*PDILRH
Trigger: GTGTCTTAGAATATCAGGGCAAGTATATTCTGAAAG...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGATGATGTTGCTGTTGTaGCGGTCTCCAATTCCCAAG +
Preference number: 4 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTMMLLL*RSPIPK
Trigger: CTTGGGAATTGGAGACCGGCACAACAGCAACATCAT...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGTATTCCAAAGCTTCTTaGTCAGTTTTGTCCAAGGCT +
Preference number: 4 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGYSKAS*SVLSKA
Trigger: AGCCTTGGACAAAACTGAGCAAGAAGCTTTGGAATA...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGCTGCTTGTCGTTGTTTaGAGAGACTATTACCCAAAT +
Preference number: 4 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGLLVVV*RDYYPN
Trigger: ATTTGGGTAATAGTCTCTCCAAACAACGACAAGCAG...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGCCACACAGTCCCCAATaGATAGACAGCCATAAGGTA +
Preference number: 4 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTPHSPQ*IDSHKV
Trigger: TACCTTATGGCTGTCTATCCATTGGGGACTGTGTGG...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp AGCAGAGAACACAGATGGATCGTGCTCTGTCTCTGTGATAATTACCAATCTCTTTGCTGCTTGATGGTGTaGAAGATCCAATCCATTTTT +
Preference number: 4 (lower is better)
Translates to: SREHRWIVLCLCDNYQSLCCLMV*KIQSIF
Trigger: AAAAATGGATTGGATCTTCCACACCATCAAGCAGCA...AAGAGATTGGTAATTATCACAGAGACAGAGCACGATCCATCTGTGTTCTCTGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR CCA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGTGCTGCTTGATGGTGTaGAAGATCCAATCCATTTTT +
Preference number: 4 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGCCLMV*KIQSIF
Trigger: AAAAATGGATTGGATCTTCCACACCATCAAGCAGCA...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp AGCAGAGAACACAGATGGATCGTGCTCTGTCTCTGTGATAATTACCAATCTCTTCCCAAATCACCACTATaGTTTGTCCTTTATCTAACT +
Preference number: 4 (lower is better)
Translates to: SREHRWIVLCLCDNYQSLPKSPL*FVLYLT
Trigger: AGTTAGATAAAGGACAAATCATAGTGGTGATTTGGG...AAGAGATTGGTAATTATCACAGAGACAGAGCACGATCCATCTGTGTTCTCTGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR TCA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTATTCTTTATTTGGATTTaGCCCAGTAACACCAATAGG +
Preference number: 4 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLFFIWI*PSNTNR
Trigger: CCTATTGGTGTTACTGGGTCAAATCCAAATAAAGAA...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACAAATTCTTCCCTTTCTaGTTCTTGGGTGACACTTAC +
Preference number: 4 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHKFFPF*FLGDTY
Trigger: GTAAGTGTCACCCAAGAAGCAGAAAGGGAAGAATTT...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTCTGACAGTCTTATTGTaGATCTCAGATTTTAAATGC +
Preference number: 4 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFLTVLL*ISDFKC
Trigger: GCATTTAAAATCTGAGATGCACAATAAGACTGTCAG...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGGAACAGGTCAATGGCTaGATCATATATCTCGCCCTT +
Preference number: 4 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTEQVNG*IIYLAL
Trigger: AAGGGCGAGATATATGATGCAGCCATTGACCTGTTC...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACTATTCCAAAGCTTCTTaGTCAGTTTTGTCCAAGGCT +
Preference number: 4 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHYSKAS*SVLSKA
Trigger: AGCCTTGGACAAAACTGAGCAAGAAGCTTTGGAATA...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGCAGTTCAAAGCATGCTaGTTGATGGTGTGGAAGATC +
Preference number: 4 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTQFKAC*LMVWKI
Trigger: GATCTTCCACACCATCAAGCAGCATGCTTTGAACTG...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGTCACTATCATTCCATTaGGGAGTAAACATTCCACTA +
Preference number: 4 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGSLSFH*GVNIPL
Trigger: TAGTGGAATGTTTACTCCCCAATGGAATGATAGTGA...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACCTGCTTGTCGTTGTTTaGAGAGACTATTACCCAAAT +
Preference number: 4 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHLLVVV*RDYYPN
Trigger: ATTTGGGTAATAGTCTCTCCAAACAACGACAAGCAG...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACTGCTGCTTGATGGTGTaGAAGATCCAATCCATTTTT +
Preference number: 4 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHCCLMV*KIQSIF
Trigger: AAAAATGGATTGGATCTTCCACACCATCAAGCAGCA...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACCCCAAATCACCACTATaGTTTGTCCTTTATCTAACT +
Preference number: 4 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHPKSPL*FVLYLT
Trigger: AGTTAGATAAAGGACAAATCATAGTGGTGATTTGGG...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR TCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACAGAATATACTTGCCCTaGTATTCTAAGACACAGAGT +
Preference number: 4 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHRIYLP*YSKTQS
Trigger: ACTCTGTGTCTTAGAATATCAGGGCAAGTATATTCT...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGCTTTCAGAATATACTTaGCCTGATATTCTAAGACAC +
Preference number: 4 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGLSEYT*PDILRH
Trigger: GTGTCTTAGAATATCAGGGCAAGTATATTCTGAAAG...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACATCAAATTCACACACTaGCATGCCAATAACAAAACC +
Preference number: 4 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHIKFTH*HANNKT
Trigger: GGTTTTGTTATTGGCATGCCAGTGTGTGAATTTGAT...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGAGTATAGGCTTTCTTTaGCCATCAGCATCAAGTTGG +
Preference number: 4 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTSIGFL*PSASSW
Trigger: CCAACTTGATGCTGATGGCCAAAGAAAGCCTATACT...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGTTCCTTCGAAAGTCTTaGACTTCTGGATCTTTAACC +
Preference number: 4 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTFLRKS*TSGSLT
Trigger: GGTTAAAGATCCAGAAGTCCAAGACTTTCGAAGGAA...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGCTGCTTGTCGTTGTTTaGAGAGACTATTACCCAAAT +
Preference number: 4 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTLLVVV*RDYYPN
Trigger: ATTTGGGTAATAGTCTCTCCAAACAACGACAAGCAG...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
3UTR CAA 72 bp TGTAATTCTTCAGTTCCCACCATCAAAGTTGTAGATTaGTACCATGTCACTGAGTTTGACTGTAATAATCCC +
Preference number: 4 (lower is better)
Translates to: CNSSVPTIKVVD*YHVTEFDCNNP
Trigger: GGGATTATTACAGTCAAACTCAGTGACATGGTACAAATCTACAACTTTGATGGTGGGAACTGAAGAATTACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR GCA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGCTGACAGTCTTATTGTaGATCTCAGATTTTAAATGC +
Preference number: 4 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTLTVLL*ISDFKC
Trigger: GCATTTAAAATCTGAGATGCACAATAAGACTGTCAG...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGGAGGGTAGACATACATaGCTCTGCTATGAGGCGAGT +
Preference number: 5 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLEGRHT*LCYEAS
Trigger: ACTCGCCTCATAGCAGAGCAATGTATGTCTACCCTC...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGTCAAACTCTCTGGTCTaGGTGTACTCTTGTGCTCCC +
Preference number: 5 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLSNSLV*VYSCAP
Trigger: GGGAGCACAAGAGTACACCAAGACCAGAGAGTTTGA...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGTGGCATGCTGCCGAATaGCTAGGTAAGCCTTGTAAC +
Preference number: 5 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLWHAAE*LGKPCN
Trigger: GTTACAAGGCTTACCTAGCAATTCGGCAGCATGCCA...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGTGTTGTAGATGTGCTTaGGCAGTTCTGGGGAAGACT +
Preference number: 5 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLCCRCA*AVLGKT
Trigger: AGTCTTCCCCAGAACTGCCAAAGCACATCTACAACA...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGGGTCTTGGTGTACTCTaGTGCTCCCTTACTAATCAC +
Preference number: 5 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLGLGVL*CSLTNH
Trigger: GTGATTAGTAAGGGAGCACAAGAGTACACCAAGACC...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGAGGTTGATGAAGAGATaGGCATGCTGCCGAATTGCT +
Preference number: 5 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLRLMKR*ACCRIA
Trigger: AGCAATTCGGCAGCATGCCAATCTCTTCATCAACCT...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS TCA 90 bp AGCGCCCCCTTCAGGCCTCCTTTGCACTGGATTTGCATGATGGTGTaGGAGTTTCTCACCACCTCGATGAGACCCACACAGTCCCCAATG +
Preference number: 5 (lower is better)
Translates to: SAPFRPPLHWICMMV*EFLTTSMRPTQSPM
Trigger: CATTGGGGACTGTGTGGGTCTCATCGAGGTGGTGAGAAACTCTCACACCATCATGCAAATCCAGTGCAAAGGAGGCCTGAAGGGGGCGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGGCTCGGAGCTGTTCCTaGTCATTTTCTCTTAACTCA +
Preference number: 5 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLARSCS*SFSLNS
Trigger: TGAGTTAAGAGAAAATGACAAGGAACAGCTCCGAGC...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGGTTCCTTCGAAAGTCTaGGACTTCTGGATCTTTAAC +
Preference number: 5 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLVPSKV*DFWIFN
Trigger: GTTAAAGATCCAGAAGTCCAAGACTTTCGAAGGAAC...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGTACTTCTGCTTGTCGTaGTTTGGAGAGACTATTACC +
Preference number: 5 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLYFCLS*FGETIT
Trigger: GGTAATAGTCTCTCCAAACAACGACAAGCAGAAGTA...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGTCTCTGGAATTCCACTaGACAGACAGAAGCAATTTG +
Preference number: 5 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLSLEFH*TDRSNL
Trigger: CAAATTGCTTCTGTCTGTCAAGTGGAATTCCAGAGA...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS TCA 90 bp TGTAGGGTGTGGCTGTGGAGATGCGCCTGGAGTATGACGGCATGGTaGAGCTATCAATCGGCAGCTGAGAGTATAGGCTTTCTTTGGCCA +
Preference number: 5 (lower is better)
Translates to: CRVWLWRCAWSMTAW*SYQSAAESIGFLWP
Trigger: TGGCCAAAGAAAGCCTATACTCTCAGCTGCCGATTGATAGCTTCACCATGCCGTCATACTCCAGGCGCATCTCCACAGCCACACCCTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CACTGTACAGGTCAGGAACAGGGGCTCCCTGCGGCCTCTCCTCTGCCCTTACTGAAACCAATTTCTCGATaGAGGATCTTTTCTTCACGG +
Preference number: 5 (lower is better)
Translates to: HCTGQEQGLPAASPLPLLKPISR*RIFSSR
Trigger: CCGTGAAGAAAAGATCCTCAATCGAGAAATTGGTTT...CAGTAAGGGCAGAGGAGAGGCCGCAGGGAGCCCCTGTTCCTGACCTGTACAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCCGGGACACGGACCAATaGGCATGTTCTTCGATCACA +
Preference number: 5 (lower is better)
Translates to: LAQVLMLFLTVPSHATACRDTDQ*ACSSIT
Trigger: TGTGATCGAAGAACATGCCAATTGGTCCGTGTCCCG...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GAGAAGTGTGATAACTGCTCTGTTCCCATTCCCTTTGCTGTAATTAGCACACGGTGCAGTGTGTGGCTGTaGAACTGCAGCGCCCCCTTC +
Preference number: 5 (lower is better)
Translates to: EKCDNCSVPIPFAVISTRCSVWL*NCSAPF
Trigger: GAAGGGGGCGCTGCAGTTCAACAGCCACACACTGCA...CCGTGTGCTAATTACAGCAAAGGGAATGGGAACAGAGCAGTTATCACACTTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR CAA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCTGCAGTGTGTGGCTGTaGAACTGCAGCGCCCCCTTC +
Preference number: 5 (lower is better)
Translates to: EAPGSKWHIIALWKQILICSVWL*NCSAPF
Trigger: GAAGGGGGCGCTGCAGTTCAACAGCCACACACTGCA...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGTGCAGTGTGTGGCTGTaGAACTGCAGCGCCCCCTTC +
Preference number: 5 (lower is better)
Translates to: TKTQLSASIVTAFKTAGECSVWL*NCSAPF
Trigger: GAAGGGGGCGCTGCAGTTCAACAGCCACACACTGCA...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp AGGTTCGTCTTTTCTGTGACGCCACATCAGCTGGCTCCTGACGAGCAGAGAACATCTTTCACCATGATGTaGCTGTTGTGCCGGTCTCCA +
Preference number: 5 (lower is better)
Translates to: RFVFSVTPHQLAPDEQRTSFTMM*LLCRSP
Trigger: TGGAGACCGGCACAACAGCAACATCATGGTGAAAGA...TGTTCTCTGCTCGTCAGGAGCCAGCTGATGTGGCGTCACAGAAAAGACGAACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS TCA 90 bp ATGCGCCTGGAGTATGACGGCATGGTGAAGCTATCAATCGGCAGCTaGGAGTATAGGCTTTCTTTGGCCATCAGCATCAAGTTGGGCATC +
Preference number: 5 (lower is better)
Translates to: MRLEYDGMVKLSIGS*EYRLSLAISIKLGI
Trigger: GATGCCCAACTTGATGCTGATGGCCAAAGAAAGCCTATACTCTCAGCTGCCGATTGATAGCTTCACCATGCCGTCATACTCCAGGCGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCGGGAAGACTCGACATTaGGAGGGTAGACATACATTG +
Preference number: 5 (lower is better)
Translates to: LAQVLMLFLTVPSHATACGKTRH*EGRHTL
Trigger: CAATGTATGTCTACCCTCCAAATGTCGAGTCTTCCC...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GAGGATCTTGAATTTGAGGCCAGCCTGGGCTACACTGAGACCTTGTACCAACAAGCGAAGGTCAAGGCCTaGGTTTTGCCAGATGTTCTC +
Preference number: 5 (lower is better)
Translates to: EDLEFEASLGYTETLYQQAKVKA*VLPDVL
Trigger: GAGAACATCTGGCAAAACCAAGGCCTTGACCTTCGC...TTGTTGGTACAAGGTCTCAGTGTAGCCCAGGCTGGCCTCAAATTCAAGATCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS TCA 90 bp ACAGTGCTCCTCCTTAGCACCCTTTCGGCCTTTAACAGAGCAGATTaGAAGGCAAAGGCGCGCAGCACGAGGAAGATCAGGAATGTATAT +
Preference number: 5 (lower is better)
Translates to: TVLLLSTLSAFNRAD*KAKARSTRKIRNVY
Trigger: ATATACATTCCTGATCTTCCTCGTGCTGCGCGCCTTTGCCTTTCAATCTGCTCTGTTAAAGGCCGAAAGGGTGCTAAGGAGGAGCACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCGCCATCAGCATCAAGTaGGGCATCCTCCCCAGCATT +
Preference number: 5 (lower is better)
Translates to: EAPGSKWHIIALWKQILIAISIK*GILPSI
Trigger: AATGCTGGGGAGGATGCCCAACTTGATGCTGATGGC...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCGAGTATAGGCTTTCTTaGGCCATCAGCATCAAGTTG +
Preference number: 5 (lower is better)
Translates to: LAQVLMLFLTVPSHATACEYRLS*AISIKL
Trigger: CAACTTGATGCTGATGGCCAAAGAAAGCCTATACTC...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCGCTTCTTGCTCAGTTTaGTCCAAGGCTAGAGTCTTT +
Preference number: 5 (lower is better)
Translates to: LAQVLMLFLTVPSHATACASCSV*SKARVF
Trigger: AAAGACTCTAGCCTTGGACAAAACTGAGCAAGAAGC...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CTTGCTCAAGTCCTAATGTTGTTCCTGACTGTGCCATCCCATGCCACTGCCTGCTTCAAAGCATGCTGCTaGATGGTGTGGAAGATCCAA +
Preference number: 5 (lower is better)
Translates to: LAQVLMLFLTVPSHATACFKACC*MVWKIQ
Trigger: TTGGATCTTCCACACCATCAAGCAGCATGCTTTGAA...GCAGGCAGTGGCATGGGATGGCACAGTCAGGAACAACATTAGGACTTGAGCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS GCA 90 bp TTTGACCCAGTAACACCAATAGGGTTCAGCAGATCTTCTAACCCATaGGGTACAGGCCAGAGATTCAAAGCCATTTTCCCGGACACTAGG +
Preference number: 5 (lower is better)
Translates to: FDPVTPIGFSRSSNP*GTGQRFKAIFPDTR
Trigger: CCTAGTGTCCGGGAAAATGGCTTTGAATCTCTGGCCTGTACCGCATGGGTTAGAAGATCTGCTGAACCCTATTGGTGTTACTGGGTCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATAGGCTTCAGCAATGACTaGCTCTGGCACACAGTCATG +
Preference number: 5 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIGFSND*LWHTVM
Trigger: CATGACTGTGTGCCAGAGCAAGTCATTGCTGAAGCC...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp AGGTTCGTCTTTTCTGTGACGCCACATCAGCTGGCTCCTGACGAGCAGAGAACAGGAACAAGGTACTCTTaGAGTGTTCACATTGTCACA +
Preference number: 5 (lower is better)
Translates to: RFVFSVTPHQLAPDEQRTGTRYS*SVHIVT
Trigger: TGTGACAATGTGAACACTCAAAGAGTACCTTGTTCC...TGTTCTCTGCTCGTCAGGAGCCAGCTGATGTGGCGTCACAGAAAAGACGAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR CAA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCCGGGACACGGACCAATaGGCATGTTCTTCGATCACA +
Preference number: 5 (lower is better)
Translates to: EAPGSKWHIIALWKQILIRDTDQ*ACSSIT
Trigger: TGTGATCGAAGAACATGCCAATTGGTCCGTGTCCCG...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATAGCGAAGGTCAAGGCCTaGGTTTTGCCAGATGTTCTC +
Preference number: 5 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIAKVKA*VLPDVL
Trigger: GAGAACATCTGGCAAAACCAAGGCCTTGACCTTCGC...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATACCCTTCAGGCCTCCTTaGCACTGGATTTGCATGATG +
Preference number: 5 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIPFRPP*HWICMM
Trigger: CATCATGCAAATCCAGTGCAAAGGAGGCCTGAAGGG...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGACCATGATGTTGCTGTaGTGCCGGTCTCCAATTCCC +
Preference number: 5 (lower is better)
Translates to: TKTQLSASIVTAFKTAGETMMLL*CRSPIP
Trigger: GGGAATTGGAGACCGGCACAACAGCAACATCATGGT...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS TCA 90 bp CGACATTTGGAGGGTAGACATACATTGCTCTGCTATGAGGCGAGTTaGGATCCCGCAGGTCCACAGCTTCTTTGCAAACATTCAGAATGT +
Preference number: 5 (lower is better)
Translates to: RHLEGRHTLLCYEAS*DPAGPQLLCKHSEC
Trigger: ACATTCTGAATGTTTGCAAAGAAGCTGTGGACCTGCGGGATCTCAACTCGCCTCATAGCAGAGCAATGTATGTCTACCCTCCAAATGTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAGCCATCAGCATCAAGTaGGGCATCCTCCCCAGCATT +
Preference number: 5 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLAISIK*GILPSI
Trigger: AATGCTGGGGAGGATGCCCAACTTGATGCTGATGGC...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATATCAAACTCTCTGGTCTaGGTGTACTCTTGTGCTCCC +
Preference number: 5 (lower is better)
Translates to: LSLIYRPREKLTMLLPTISNSLV*VYSCAP
Trigger: GGGAGCACAAGAGTACACCAAGACCAGAGAGTTTGA...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCTCAAACTCTCTGGTCTaGGTGTACTCTTGTGCTCCC +
Preference number: 5 (lower is better)
Translates to: EAPGSKWHIIALWKQILISNSLV*VYSCAP
Trigger: GGGAGCACAAGAGTACACCAAGACCAGAGAGTTTGA...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGTGGCATGCTGCCGAATaGCTAGGTAAGCCTTGTAAC +
Preference number: 5 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEWHAAE*LGKPCN
Trigger: GTTACAAGGCTTACCTAGCAATTCGGCAGCATGCCA...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTGAGGGTAGACATACATaGCTCTGCTATGAGGCGAGT +
Preference number: 5 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFEGRHT*LCYEAS
Trigger: ACTCGCCTCATAGCAGAGCAATGTATGTCTACCCTC...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp ATGACAATAGAACCATCAGCTGCATTTGAAGCACGGATTCTTGGAGCCTGGAGTGGGAAGACTCGACATTaGGAGGGTAGACATACATTG +
Preference number: 5 (lower is better)
Translates to: MTIEPSAAFEARILGAWSGKTRH*EGRHTL
Trigger: CAATGTATGTCTACCCTCCAAATGTCGAGTCTTCCC...ACTCCAGGCTCCAAGAATCCGTGCTTCAAATGCAGCTGATGGTTCTATTGTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR CAA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGGGCTTCAGCAATGACTaGCTCTGGCACACAGTCATG +
Preference number: 5 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGGFSND*LWHTVM
Trigger: CATGACTGTGTGCCAGAGCAAGTCATTGCTGAAGCC...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACGCCATCAGCATCAAGTaGGGCATCCTCCCCAGCATT +
Preference number: 5 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHAISIK*GILPSI
Trigger: AATGCTGGGGAGGATGCCCAACTTGATGCTGATGGC...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTACGGGACACGGACCAATaGGCATGTTCTTCGATCACA +
Preference number: 5 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLRDTDQ*ACSSIT
Trigger: TGTGATCGAAGAACATGCCAATTGGTCCGTGTCCCG...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAACCATGATGTTGCTGTaGTGCCGGTCTCCAATTCCC +
Preference number: 5 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLTMMLL*CRSPIP
Trigger: GGGAATTGGAGACCGGCACAACAGCAACATCATGGT...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGAGGTTGATGAAGAGATaGGCATGCTGCCGAATTGCT +
Preference number: 5 (lower is better)
Translates to: TKTQLSASIVTAFKTAGERLMKR*ACCRIA
Trigger: AGCAATTCGGCAGCATGCCAATCTCTTCATCAACCT...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCAGAGTGTACTTCTGCTaGTCGTTGTTTGGAGAGACT +
Preference number: 5 (lower is better)
Translates to: EAPGSKWHIIALWKQILIRVYFC*SLFGET
Trigger: AGTCTCTCCAAACAACGACAAGCAGAAGTACACTCT...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATAAGAGTGTACTTCTGCTaGTCGTTGTTTGGAGAGACT +
Preference number: 5 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIRVYFC*SLFGET
Trigger: AGTCTCTCCAAACAACGACAAGCAGAAGTACACTCT...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCGCTCGGAGCTGTTCCTaGTCATTTTCTCTTAACTCA +
Preference number: 5 (lower is better)
Translates to: EAPGSKWHIIALWKQILIARSCS*SFSLNS
Trigger: TGAGTTAAGAGAAAATGACAAGGAACAGCTCCGAGC...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACGCGAAGGTCAAGGCCTaGGTTTTGCCAGATGTTCTC +
Preference number: 5 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHAKVKA*VLPDVL
Trigger: GAGAACATCTGGCAAAACCAAGGCCTTGACCTTCGC...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATATCCTTTGCACTGGATTaGCATGATGGTGTGAGAGTT +
Preference number: 5 (lower is better)
Translates to: LSLIYRPREKLTMLLPTISFALD*HDGVRV
Trigger: AACTCTCACACCATCATGCAAATCCAGTGCAAAGGA...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGTCTTTCACCATGATGTaGCTGTTGTGCCGGTCTCCA +
Preference number: 5 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGSFTMM*LLCRSP
Trigger: TGGAGACCGGCACAACAGCAACATCATGGTGAAAGA...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTGGTCTTGGTGTACTCTaGTGCTCCCTTACTAATCAC +
Preference number: 5 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFGLGVL*CSLTNH
Trigger: GTGATTAGTAAGGGAGCACAAGAGTACACCAAGACC...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGTGGCATGCTGCCGAATaGCTAGGTAAGCCTTGTAAC +
Preference number: 5 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGWHAAE*LGKPCN
Trigger: GTTACAAGGCTTACCTAGCAATTCGGCAGCATGCCA...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCGCTTCTTGCTCAGTTTaGTCCAAGGCTAGAGTCTTT +
Preference number: 5 (lower is better)
Translates to: EAPGSKWHIIALWKQILIASCSV*SKARVF
Trigger: AAAGACTCTAGCCTTGGACAAAACTGAGCAAGAAGC...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGGCTTCTTGCTCAGTTTaGTCCAAGGCTAGAGTCTTT +
Preference number: 5 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEASCSV*SKARVF
Trigger: AAAGACTCTAGCCTTGGACAAAACTGAGCAAGAAGC...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGTTCAAAGCATGCTGCTaGATGGTGTGGAAGATCCAA +
Preference number: 5 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEFKACC*MVWKIQ
Trigger: TTGGATCTTCCACACCATCAAGCAGCATGCTTTGAA...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCTTCAAAGCATGCTGCTaGATGGTGTGGAAGATCCAA +
Preference number: 5 (lower is better)
Translates to: EAPGSKWHIIALWKQILIFKACC*MVWKIQ
Trigger: TTGGATCTTCCACACCATCAAGCAGCATGCTTTGAA...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCTTCCCTTTCTGCTTCTaGGGTGACACTTACGAAAAT +
Preference number: 5 (lower is better)
Translates to: EAPGSKWHIIALWKQILIFPFCF*GDTYEN
Trigger: ATTTTCGTAAGTGTCACCCAAGAAGCAGAAAGGGAA...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATAGTTCCTTCGAAAGTCTaGGACTTCTGGATCTTTAAC +
Preference number: 5 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIVPSKV*DFWIFN
Trigger: GTTAAAGATCCAGAAGTCCAAGACTTTCGAAGGAAC...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGGGGAAGACTCGACATTaGGAGGGTAGACATACATTG +
Preference number: 5 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGGKTRH*EGRHTL
Trigger: CAATGTATGTCTACCCTCCAAATGTCGAGTCTTCCC...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
44% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGTCTGCTTGTCGTTGTTaGGAGAGACTATTACCCAAA +
Preference number: 5 (lower is better)
Translates to: TKTQLSASIVTAFKTAGESACRC*ERLLPK
Trigger: TTTGGGTAATAGTCTCTCCAAACAACGACAAGCAGA...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGTCTCTGGAATTCCACTaGACAGACAGAAGCAATTTG +
Preference number: 5 (lower is better)
Translates to: TKTQLSASIVTAFKTAGESLEFH*TDRSNL
Trigger: CAAATTGCTTCTGTCTGTCAAGTGGAATTCCAGAGA...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGCTTCATCTGTACCTTTaGTGTCTCATCCTTCTTCTC +
Preference number: 5 (lower is better)
Translates to: TKTQLSASIVTAFKTAGELHLYL*CLILLL
Trigger: GAGAAGAAGGATGAGACACAAAAGGTACAGATGAAG...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACTCTTTCACCATGATGTaGCTGTTGTGCCGGTCTCCA +
Preference number: 5 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHSFTMM*LLCRSP
Trigger: TGGAGACCGGCACAACAGCAACATCATGGTGAAAGA...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAGGTCTTGGTGTACTCTaGTGCTCCCTTACTAATCAC +
Preference number: 5 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLGLGVL*CSLTNH
Trigger: GTGATTAGTAAGGGAGCACAAGAGTACACCAAGACC...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp ATGACAATAGAACCATCAGCTGCATTTGAAGCACGGATTCTTGGAGCCTGGAGTATATTCCAAAGCTTCTaGCTCAGTTTTGTCCAAGGC +
Preference number: 5 (lower is better)
Translates to: MTIEPSAAFEARILGAWSIFQSF*LSFVQG
Trigger: GCCTTGGACAAAACTGAGCAAGAAGCTTTGGAATAT...ACTCCAGGCTCCAAGAATCCGTGCTTCAAATGCAGCTGATGGTTCTATTGTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS-3UTR CAA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGATATTCCAAAGCTTCTaGCTCAGTTTTGTCCAAGGC +
Preference number: 5 (lower is better)
Translates to: TKTQLSASIVTAFKTAGEIFQSF*LSFVQG
Trigger: GCCTTGGACAAAACTGAGCAAGAAGCTTTGGAATAT...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCATATTCCAAAGCTTCTaGCTCAGTTTTGTCCAAGGC +
Preference number: 5 (lower is better)
Translates to: EAPGSKWHIIALWKQILIIFQSF*LSFVQG
Trigger: GCCTTGGACAAAACTGAGCAAGAAGCTTTGGAATAT...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGAGATCCAATCCATTTTaGTCGTCCATCCACCATGAT +
Preference number: 5 (lower is better)
Translates to: TKTQLSASIVTAFKTAGERSNPF*SSIHHD
Trigger: ATCATGGTGGATGGACGACAAAAATGGATTGGATCT...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS TCA 90 bp AGGAAGTATTCGTCACAGCCACACACTTTCAGAATATACTTGCCCTaGTATTCTAAGACACAGAGTTTCAGCTGCTCAGAGGACAACAAC +
Preference number: 5 (lower is better)
Translates to: RKYSSQPHTFRIYLP*YSKTQSFSCSEDNN
Trigger: GTTGTTGTCCTCTGAGCAGCTGAAACTCTGTGTCTTAGAATATCAGGGCAAGTATATTCTGAAAGTGTGTGGCTGTGACGAATACTTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS GCA 90 bp TTTCCAGGAAGTATTCGTCACAGCCACACACTTTCAGAATATACTTaGCCTGATATTCTAAGACACAGAGTTTCAGCTGCTCAGAGGACA +
Preference number: 5 (lower is better)
Translates to: FPGSIRHSHTLSEYT*PDILRHRVSAAQRT
Trigger: TGTCCTCTGAGCAGCTGAAACTCTGTGTCTTAGAATATCAGGGCAAGTATATTCTGAAAGTGTGTGGCTGTGACGAATACTTCCTGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CTGAGCCTCATCTACAGACCGAGAGAAAAGCTAACCATGCTGTTACCAACGATAATCTTTTCTTCACGGTaGCCTACTGGTTCAATAACT +
Preference number: 5 (lower is better)
Translates to: LSLIYRPREKLTMLLPTIIFSSR*PTGSIT
Trigger: AGTTATTGAACCAGTAGGCAACCGTGAAGAAAAGAT...TATCGTTGGTAACAGCATGGTTAGCTTTTCTCTCGGTCTGTAGATGAGGCTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCAAACCAATTTCTCGATaGAGGATCTTTTCTTCACGG +
Preference number: 5 (lower is better)
Translates to: EAPGSKWHIIALWKQILIKPISR*RIFSSR
Trigger: CCGTGAAGAAAAGATCCTCAATCGAGAAATTGGTTT...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACTGTTGTAGATGTGCTTaGGCAGTTCTGGGGAAGACT +
Preference number: 5 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHCCRCA*AVLGKT
Trigger: AGTCTTCCCCAGAACTGCCAAAGCACATCTACAACA...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTTACTTCTGCTTGTCGTaGTTTGGAGAGACTATTACC +
Preference number: 5 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFYFCLS*FGETIT
Trigger: GGTAATAGTCTCTCCAAACAACGACAAGCAGAAGTA...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGGAGTATAGGCTTTCTTaGGCCATCAGCATCAAGTTG +
Preference number: 5 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGEYRLS*AISIKL
Trigger: CAACTTGATGCTGATGGCCAAAGAAAGCCTATACTC...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CCAGGAACGCCTGAGCTAGGAACTGTCAGGAGATTATTGCACAGTTTTTCTTTTGGAACAAGGTACTCTTaGAGTGTTCACATTGTCACA +
Preference number: 5 (lower is better)
Translates to: PGTPELGTVRRLLHSFSFGTRYS*SVHIVT
Trigger: TGTGACAATGTGAACACTCAAAGAGTACCTTGTTCC...AAAAGAAAAACTGTGCAATAATCTCCTGACAGTTCCTAGCTCAGGCGTTCCTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGGCTCGGAGCTGTTCCTaGTCATTTTCTCTTAACTCA +
Preference number: 5 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGARSCS*SFSLNS
Trigger: TGAGTTAAGAGAAAATGACAAGGAACAGCTCCGAGC...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp ACAAAAACGCAGCTGTCTGCAAGTATTGTGACTGCTTTCAAAACCGCAGGTGAGACAGACAGAAGCAATTaGGGTAGGATTTCAGGAATA +
Preference number: 5 (lower is better)
Translates to: TKTQLSASIVTAFKTAGETDRSN*GRISGI
Trigger: TATTCCTGAAATCCTACCCAAATTGCTTCTGTCTGT...CTCACCTGCGGTTTTGAAAGCAGTCACAATACTTGCAGACAGCTGCGTTTTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GAAGCACCTGGGAGTAAGTGGCACATTATTGCTCTCTGGAAGCAGATATTGATCACAGACAGAAGCAATTaGGGTAGGATTTCAGGAATA +
Preference number: 5 (lower is better)
Translates to: EAPGSKWHIIALWKQILITDRSN*GRISGI
Trigger: TATTCCTGAAATCCTACCCAAATTGCTTCTGTCTGT...GATCAATATCTGCTTCCAGAGAGCAATAATGTGCCACTTACTCCCAGGTGCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGACCATGATGTTGCTGTaGTGCCGGTCTCCAATTCCC +
Preference number: 5 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTTMMLL*CRSPIP
Trigger: GGGAATTGGAGACCGGCACAACAGCAACATCATGGT...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS GCA 90 bp CATCTCCTGAAACCTCTCAAACTCTCTGGTCTTGGTGTACTCTTGTaGTCCCTTACTAATCACAATCAAGAAATCCTGTGTCAACACAAA +
Preference number: 5 (lower is better)
Translates to: HLLKPLKLSGLGVLL*SLTNHNQEILCQHK
Trigger: TTTGTGTTGACACAGGATTTCTTGATTGTGATTAGTAAGGGAGCACAAGAGTACACCAAGACCAGAGAGTTTGAGAGGTTTCAGGAGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAGTCACTATCATTCCATaGGGGAGTAAACATTCCACT +
Preference number: 5 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLVTIIP*GSKHST
Trigger: AGTGGAATGTTTACTCCCCAATGGAATGATAGTGAC...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGGAGGGTAGACATACATaGCTCTGCTATGAGGCGAGT +
Preference number: 5 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTEGRHT*LCYEAS
Trigger: ACTCGCCTCATAGCAGAGCAATGTATGTCTACCCTC...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTATACTTCTGCTTGTCGTaGTTTGGAGAGACTATTACC +
Preference number: 5 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLYFCLS*FGETIT
Trigger: GGTAATAGTCTCTCCAAACAACGACAAGCAGAAGTA...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp TTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTAAGTCTGAACAGCAATGGGTCTCTGGAATTCCACTaGACAGACAGAAGCAATTTG +
Preference number: 5 (lower is better)
Translates to: LSRDQNPHFKSLSLNSNGSLEFH*TDRSNL
Trigger: CAAATTGCTTCTGTCTGTCAAGTGGAATTCCAGAGA...CCCATTGCTGTTCAGACTTAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp CCCAAGTGTTGTTCCTCATTAAGCAGGGATCAAAATCCCCACTTCAAATCGTTACTTCATCTGTACCTTTaGTGTCTCATCCTTCTTCTC +
Preference number: 5 (lower is better)
Translates to: PKCCSSLSRDQNPHFKSLLHLYL*CLILLL
Trigger: GAGAAGAAGGATGAGACACAAAAGGTACAGATGAAG...TAACGATTTGAAGTGGGGATTTTGATCCCTGCTTAATGAGGAACAACACTTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACTCCTTTGCACTGGATTaGCATGATGGTGTGAGAGTT +
Preference number: 5 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHSFALD*HDGVRV
Trigger: AACTCTCACACCATCATGCAAATCCAGTGCAAAGGA...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp AGCAGAGAACACAGATGGATCGTGCTCTGTCTCTGTGATAATTACCAATCTCTTAGATCCAATCCATTTTaGTCGTCCATCCACCATGAT +
Preference number: 5 (lower is better)
Translates to: SREHRWIVLCLCDNYQSLRSNPF*SSIHHD
Trigger: ATCATGGTGGATGGACGACAAAAATGGATTGGATCT...AAGAGATTGGTAATTATCACAGAGACAGAGCACGATCCATCTGTGTTCTCTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029201.14
CDS TCA 90 bp CATGTTCTTCGATCACAGACATGTCTGGAAACTTCACCACACTGCTaGACCAATCAAACTCCAACTCTAAGCATGGAGTTTCTTTATTTG +
Preference number: 5 (lower is better)
Translates to: HVLRSQTCLETSPHC*TNQTPTLSMEFLYL
Trigger: CAAATAAAGAAACTCCATGCTTAGAGTTGGAGTTTGATTGGTTCAGCAGTGTGGTGAAGTTTCCAGACATGTCTGTGATCGAAGAACATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACTTCCCTTTCTGCTTCTaGGGTGACACTTACGAAAAT +
Preference number: 5 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHFPFCF*GDTYEN
Trigger: ATTTTCGTAAGTGTCACCCAAGAAGCAGAAAGGGAA...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACTCTGCTTGTCGTTGTTaGGAGAGACTATTACCCAAA +
Preference number: 5 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHSACRC*ERLLPK
Trigger: TTTGGGTAATAGTCTCTCCAAACAACGACAAGCAGA...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp AGTTTAGTGCTATCAAACCCTGCTTGCGTGTACAGTGTTTCAATTATAGAGCACCTTCATCTGTACCTTTaGTGTCTCATCCTTCTTCTC +
Preference number: 5 (lower is better)
Translates to: SLVLSNPACVYSVSIIEHLHLYL*CLILLL
Trigger: GAGAAGAAGGATGAGACACAAAAGGTACAGATGAAG...GTGCTCTATAATTGAAACACTGTACACGCAAGCAGGGTTTGATAGCACTAAACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CCA 90 bp TCCACAGCTTCTTTGCAAACATTCAGAATGTTCCTTCGAAAGTCTTaGACTTCTGGATCTTTAACCATATCAAATTCACACACTGGCATG +
Preference number: 5 (lower is better)
Translates to: STASLQTFRMFLRKS*TSGSLTISNSHTGM
Trigger: CATGCCAGTGTGTGAATTTGATATGGTTAAAGATCCAGAAGTCCAAGACTTTCGAAGGAACATTCTGAATGTTTGCAAAGAAGCTGTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGTCCTTTGCACTGGATTaGCATGATGGTGTGAGAGTT +
Preference number: 5 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTSFALD*HDGVRV
Trigger: AACTCTCACACCATCATGCAAATCCAGTGCAAAGGA...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGGTCACTATCATTCCATaGGGGAGTAAACATTCCACT +
Preference number: 5 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTVTIIP*GSKHST
Trigger: AGTGGAATGTTTACTCCCCAATGGAATGATAGTGAC...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGTCTGCTTGTCGTTGTTaGGAGAGACTATTACCCAAA +
Preference number: 5 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTSACRC*ERLLPK
Trigger: TTTGGGTAATAGTCTCTCCAAACAACGACAAGCAGA...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGGGAACAAGGTACTCTTaGAGTGTTCACATTGTCACA +
Preference number: 5 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTGTRYS*SVHIVT
Trigger: TGTGACAATGTGAACACTCAAAGAGTACCTTGTTCC...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGAGATCCAATCCATTTTaGTCGTCCATCCACCATGAT +
Preference number: 5 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTRSNPF*SSIHHD
Trigger: ATCATGGTGGATGGACGACAAAAATGGATTGGATCT...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CCA 90 bp TTCTTTGCAAACATTCAGAATGTTCCTTCGAAAGTCTTGGACTTCTaGATCTTTAACCATATCAAATTCACACACTGGCATGCCAATAAC +
Preference number: 5 (lower is better)
Translates to: FFANIQNVPSKVLDF*IFNHIKFTHWHANN
Trigger: GTTATTGGCATGCCAGTGTGTGAATTTGATATGGTTAAAGATCCAGAAGTCCAAGACTTTCGAAGGAACATTCTGAATGTTTGCAAAGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS-3UTR CAA 90 bp GCAGAAGGATTAAGAGTCAGGATGATAGTCGGTTTTGTATTCATTTTAGTAACGACAGACAGAAGCAATTaGGGTAGGATTTCAGGAATA +
Preference number: 5 (lower is better)
Translates to: AEGLRVRMIVGFVFILVTTDRSN*GRISGI
Trigger: TATTCCTGAAATCCTACCCAAATTGCTTCTGTCTGT...CGTTACTAAAATGAATACAAAACCGACTATCATCCTGACTCTTAATCCTTCTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS GCA 72 bp GCTGTTGTGCCGGTCTCCAATTCCCAAGATAAAGGTTaGCACGCAGTACCCAGCGCAGGACCGAGTGAACAG +
Preference number: 6 (lower is better)
Translates to: AVVPVSNSQDKG*HAVPSAGPSEQ
Trigger: CTGTTCACTCGGTCCTGCGCTGGGTACTGCGTGGCAACCTTTATCTTGGGAATTGGAGACCGGCACAACAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS TCA 72 bp CATGTAGGGTGTGGCTGTGGAGATGCGCCTGGAGTATaGCGGCATGGTGAAGCTATCAATCGGCAGCTGAGA +
Preference number: 6 (lower is better)
Translates to: HVGCGCGDAPGV*RHGEAINRQLR
Trigger: TCTCAGCTGCCGATTGATAGCTTCACCATGCCGTCATACTCCAGGCGCATCTCCACAGCCACACCCTACATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS GCA 72 bp AACATTCCACTAGGATTCGTGGGGGCATCAAGTGGATaGCCCACAGTTCACCCGAAGATGGTCGTGGAGGCA +
Preference number: 6 (lower is better)
Translates to: NIPLGFVGASSG*PTVHPKMVVEA
Trigger: TGCCTCCACGACCATCTTCGGGTGAACTGTGGGGCATCCACTTGATGCCCCCACGAATCCTAGTGGAATGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS TCA 72 bp CTCCTTAGCACCCTTTCGGCCTTTAACAGAGCAGATTaGAAGGCAAAGGCGCGCAGCACGAGGAAGATCAGG +
Preference number: 6 (lower is better)
Translates to: LLSTLSAFNRAD*KAKARSTRKIR
Trigger: CCTGATCTTCCTCGTGCTGCGCGCCTTTGCCTTTCAATCTGCTCTGTTAAAGGCCGAAAGGGTGCTAAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS TCA 72 bp TCATATATCTCGCCCTTGTTCTTGTCCTTGAGCCATTaGTGCAGTGTGTGGCTGTTGAACTGCAGCGCCCCC +
Preference number: 6 (lower is better)
Translates to: SYISPLFLSLSH*CSVWLLNCSAP
Trigger: GGGGGCGCTGCAGTTCAACAGCCACACACTGCATCAATGGCTCAAGGACAAGAACAAGGGCGAGATATATGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS GCA 72 bp TGGGGAAGACTCGACATTTGGAGGGTAGACATACATTaGTCTGCTATGAGGCGAGTTGAGATCCCGCAGGTC +
Preference number: 6 (lower is better)
Translates to: WGRLDIWRVDIH*SAMRRVEIPQV
Trigger: GACCTGCGGGATCTCAACTCGCCTCATAGCAGAGCAATGTATGTCTACCCTCCAAATGTCGAGTCTTCCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS GCA 72 bp GTACCCAGCGCAGGACCGAGTGAACAGGTCAATGGCTaGATCATATATCTCGCCCTTGTTCTTGTCCTTGAG +
Preference number: 6 (lower is better)
Translates to: VPSAGPSEQVNG*IIYLALVLVLE
Trigger: CTCAAGGACAAGAACAAGGGCGAGATATATGATGCAGCCATTGACCTGTTCACTCGGTCCTGCGCTGGGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CCA 72 bp AGTAAACATTCCACTAGGATTCGTGGGGGCATCAAGTaGATGCCCCACAGTTCACCCGAAGATGGTCGTGGA +
Preference number: 6 (lower is better)
Translates to: SKHSTRIRGGIK*MPHSSPEDGRG
Trigger: TCCACGACCATCTTCGGGTGAACTGTGGGGCATCCACTTGATGCCCCCACGAATCCTAGTGGAATGTTTACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS TCA 72 bp TTCAGGCCTCCTTTGCACTGGATTTGCATGATGGTGTaGGAGTTTCTCACCACCTCGATGAGACCCACACAG +
Preference number: 6 (lower is better)
Translates to: FRPPLHWICMMV*EFLTTSMRPTQ
Trigger: CTGTGTGGGTCTCATCGAGGTGGTGAGAAACTCTCACACCATCATGCAAATCCAGTGCAAAGGAGGCCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CCA 72 bp AGCTATCAATCGGCAGCTGAGAGTATAGGCTTTCTTTaGCCATCAGCATCAAGTTGGGCATCCTCCCCAGCA +
Preference number: 6 (lower is better)
Translates to: SYQSAAESIGFL*PSASSWASSPA
Trigger: TGCTGGGGAGGATGCCCAACTTGATGCTGATGGCCAAAGAAAGCCTATACTCTCAGCTGCCGATTGATAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS TCA 72 bp GAGGGTAGACATACATTGCTCTGCTATGAGGCGAGTTaGGATCCCGCAGGTCCACAGCTTCTTTGCAAACAT +
Preference number: 6 (lower is better)
Translates to: EGRHTLLCYEAS*DPAGPQLLCKH
Trigger: ATGTTTGCAAAGAAGCTGTGGACCTGCGGGATCTCAACTCGCCTCATAGCAGAGCAATGTATGTCTACCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS TCA 72 bp TGGCTAGTCTGTTACTCAGTCCTGTATGGGAGTAACTaGATCCAGCTTCTCGGGACACGGACCAATTGGCAT +
Preference number: 6 (lower is better)
Translates to: WLVCYSVLYGSN*IQLLGTRTNWH
Trigger: ATGCCAATTGGTCCGTGTCCCGAGAAGCTGGATTCAGTTACTCCCATACAGGACTGAGTAACAGACTAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS TCA 72 bp GTCTGTGGCTCCATAGGAAGTCTTTCTCTTGTTCAGTaGTTTCAGATAGTGGGTCCCGGGTGCAAAGTGCTC +
Preference number: 6 (lower is better)
Translates to: VCGSIGSLSLVQ*FQIVGPGCKVL
Trigger: GAGCACTTTGCACCCGGGACCCACTATCTGAAATCACTGAACAAGAGAAAGACTTCCTATGGAGCCACAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS GCA 72 bp AGCTGTCCGTCATCTTTCACCATGATGTTGCTGTTGTaGCGGTCTCCAATTCCCAAGATAAAGGTTGCCACG +
Preference number: 6 (lower is better)
Translates to: SCPSSFTMMLLL*RSPIPKIKVAT
Trigger: CGTGGCAACCTTTATCTTGGGAATTGGAGACCGGCACAACAGCAACATCATGGTGAAAGATGACGGACAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CAA 72 bp AGATGTGCTTTGGCAGTTCTGGGGAAGACTCGACATTaGGAGGGTAGACATACATTGCTCTGCTATGAGGCG +
Preference number: 6 (lower is better)
Translates to: RCALAVLGKTRH*EGRHTLLCYEA
Trigger: CGCCTCATAGCAGAGCAATGTATGTCTACCCTCCAAATGTCGAGTCTTCCCCAGAACTGCCAAAGCACATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS GCA 72 bp GTAACACCAATAGGGTTCAGCAGATCTTCTAACCCATaGGGTACAGGCCAGAGATTCAAAGCCATTTTCCCG +
Preference number: 6 (lower is better)
Translates to: VTPIGFSRSSNP*GTGQRFKAIFP
Trigger: CGGGAAAATGGCTTTGAATCTCTGGCCTGTACCGCATGGGTTAGAAGATCTGCTGAACCCTATTGGTGTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CAA 72 bp AACAGCTGTCCGTCATCTTTCACCATGATGTTGCTGTaGTGCCGGTCTCCAATTCCCAAGATAAAGGTTGCC +
Preference number: 6 (lower is better)
Translates to: NSCPSSFTMMLL*CRSPIPKIKVA
Trigger: GGCAACCTTTATCTTGGGAATTGGAGACCGGCACAACAGCAACATCATGGTGAAAGATGACGGACAGCTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CAA 72 bp GCTCCGAGTCTTTTTCCTGATGGCTTCAGCAATGACTaGCTCTGGCACACAGTCATGATTGATCTTCAGAGT +
Preference number: 6 (lower is better)
Translates to: APSLFPDGFSND*LWHTVMIDLQS
Trigger: ACTCTGAAGATCAATCATGACTGTGTGCCAGAGCAAGTCATTGCTGAAGCCATCAGGAAAAAGACTCGGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CAA 72 bp CAGTACATCTGGGCCACTTCGTCTCTGGAATTCCACTaGACAGACAGAAGCAATTTGGGTAGGATTTCAGGA +
Preference number: 6 (lower is better)
Translates to: QYIWATSSLEFH*TDRSNLGRISG
Trigger: TCCTGAAATCCTACCCAAATTGCTTCTGTCTGTCAAGTGGAATTCCAGAGACGAAGTGGCCCAGATGTACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CAA 90 bp CAACAACATGCTCCGAGTCTTTTTCCTGATGGCTTCAGCAATGACTaGCTCTGGCACACAGTCATGATTGATCTTCAGAGTGTACTTCTG +
Preference number: 6 (lower is better)
Translates to: QQHAPSLFPDGFSND*LWHTVMIDLQSVLL
Trigger: CAGAAGTACACTCTGAAGATCAATCATGACTGTGTGCCAGAGCAAGTCATTGCTGAAGCCATCAGGAAAAAGACTCGGAGCATGTTGTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CCA 72 bp GGACCAATTGGCATGTTCTTCGATCACAGACATGTCTaGAAACTTCACCACACTGCTGAACCAATCAAACTC +
Preference number: 6 (lower is better)
Translates to: GPIGMFFDHRHV*KLHHTAEPIKL
Trigger: GAGTTTGATTGGTTCAGCAGTGTGGTGAAGTTTCCAGACATGTCTGTGATCGAAGAACATGCCAATTGGTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS TCA 72 bp TCGTCACAGCCACACACTTTCAGAATATACTTGCCCTaGTATTCTAAGACACAGAGTTTCAGCTGCTCAGAG +
Preference number: 6 (lower is better)
Translates to: SSQPHTFRIYLP*YSKTQSFSCSE
Trigger: CTCTGAGCAGCTGAAACTCTGTGTCTTAGAATATCAGGGCAAGTATATTCTGAAAGTGTGTGGCTGTGACGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS TCA 72 bp AATCTATATGAAACAGCTGTCCGTCATCTTTCACCATaGTGTTGCTGTTGTGCCGGTCTCCAATTCCCAAGA +
Preference number: 6 (lower is better)
Translates to: NLYETAVRHLSP*CCCCAGLQFPR
Trigger: TCTTGGGAATTGGAGACCGGCACAACAGCAACATCATGGTGAAAGATGACGGACAGCTGTTTCATATAGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CAA 90 bp TTTACTAAGCAGTACATCTGGGCCACTTCGTCTCTGGAATTCCACTaGACAGACAGAAGCAATTTGGGTAGGATTTCAGGAATAGTTACG +
Preference number: 6 (lower is better)
Translates to: FTKQYIWATSSLEFH*TDRSNLGRISGIVT
Trigger: CGTAACTATTCCTGAAATCCTACCCAAATTGCTTCTGTCTGTCAAGTGGAATTCCAGAGACGAAGTGGCCCAGATGTACTGCTTAGTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CAA 90 bp ACACATCTCCTGAAACCTCTCAAACTCTCTGGTCTTGGTGTACTCTaGTGCTCCCTTACTAATCACAATCAAGAAATCCTGTGTCAACAC +
Preference number: 6 (lower is better)
Translates to: THLLKPLKLSGLGVL*CSLTNHNQEILCQH
Trigger: GTGTTGACACAGGATTTCTTGATTGTGATTAGTAAGGGAGCACAAGAGTACACCAAGACCAGAGAGTTTGAGAGGTTTCAGGAGATGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CAA 72 bp CACACTGGCATGCCAATAACAAAACCAATTTCTCGATaGAGGATCTTTTCTTCACGGTTGCCTACTGGTTCA +
Preference number: 6 (lower is better)
Translates to: HTGMPITKPISR*RIFSSRLPTGS
Trigger: TGAACCAGTAGGCAACCGTGAAGAAAAGATCCTCAATCGAGAAATTGGTTTTGTTATTGGCATGCCAGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS CAA 72 bp CTGAAACCTCTCAAACTCTCTGGTCTTGGTGTACTCTaGTGCTCCCTTACTAATCACAATCAAGAAATCCTG +
Preference number: 6 (lower is better)
Translates to: LKPLKLSGLGVL*CSLTNHNQEIL
Trigger: CAGGATTTCTTGATTGTGATTAGTAAGGGAGCACAAGAGTACACCAAGACCAGAGAGTTTGAGAGGTTTCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS GCA 72 bp AGTATTCGTCACAGCCACACACTTTCAGAATATACTTaGCCTGATATTCTAAGACACAGAGTTTCAGCTGCT +
Preference number: 6 (lower is better)
Translates to: SIRHSHTLSEYT*PDILRHRVSAA
Trigger: AGCAGCTGAAACTCTGTGTCTTAGAATATCAGGGCAAGTATATTCTGAAAGTGTGTGGCTGTGACGAATACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS GCA 72 bp AAACCTCTCAAACTCTCTGGTCTTGGTGTACTCTTGTaGTCCCTTACTAATCACAATCAAGAAATCCTGTGT +
Preference number: 6 (lower is better)
Translates to: KPLKLSGLGVLL*SLTNHNQEILC
Trigger: ACACAGGATTTCTTGATTGTGATTAGTAAGGGAGCACAAGAGTACACCAAGACCAGAGAGTTTGAGAGGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CAA 90 bp GTCCACAGCTTCTTTGCAAACATTCAGAATGTTCCTTCGAAAGTCTaGGACTTCTGGATCTTTAACCATATCAAATTCACACACTGGCAT +
Preference number: 6 (lower is better)
Translates to: VHSFFANIQNVPSKV*DFWIFNHIKFTHWH
Trigger: ATGCCAGTGTGTGAATTTGATATGGTTAAAGATCCAGAAGTCCAAGACTTTCGAAGGAACATTCTGAATGTTTGCAAAGAAGCTGTGGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CAA 90 bp CCAATCCATTTTTGTCGTCCATCCACCATGATGTGCATCATTCATTaGCTTTGTGAAATATTCCAAAGCTTCTTGCTCAGTTTTGTCCAA +
Preference number: 6 (lower is better)
Translates to: PIHFCRPSTMMCIIH*LCEIFQSFLLSFVQ
Trigger: TTGGACAAAACTGAGCAAGAAGCTTTGGAATATTTCACAAAGCAAATGAATGATGCACATCATGGTGGATGGACGACAAAAATGGATTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CAA 72 bp TTTTGTCGTCCATCCACCATGATGTGCATCATTCATTaGCTTTGTGAAATATTCCAAAGCTTCTTGCTCAGT +
Preference number: 6 (lower is better)
Translates to: FCRPSTMMCIIH*LCEIFQSFLLS
Trigger: ACTGAGCAAGAAGCTTTGGAATATTTCACAAAGCAAATGAATGATGCACATCATGGTGGATGGACGACAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS TCA 72 bp CGTTGTTTGGAGAGACTATTACCCAAATCACCACTATaGTTTGTCCTTTATCTAACTTGTTGTAGATGTGCT +
Preference number: 6 (lower is better)
Translates to: RCLERLLPKSPL*FVLYLTCCRCA
Trigger: AGCACATCTACAACAAGTTAGATAAAGGACAAATCATAGTGGTGATTTGGGTAATAGTCTCTCCAAACAACG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CCA 72 bp GACTTCTGGATCTTTAACCATATCAAATTCACACACTaGCATGCCAATAACAAAACCAATTTCTCGATTGAG +
Preference number: 6 (lower is better)
Translates to: DFWIFNHIKFTH*HANNKTNFSIE
Trigger: CTCAATCGAGAAATTGGTTTTGTTATTGGCATGCCAGTGTGTGAATTTGATATGGTTAAAGATCCAGAAGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029201.14
ENSMUST00000108243.8
CDS CCA 72 bp AACATTCAGAATGTTCCTTCGAAAGTCTTGGACTTCTaGATCTTTAACCATATCAAATTCACACACTGGCAT +
Preference number: 6 (lower is better)
Translates to: NIQNVPSKVLDF*IFNHIKFTHWH
Trigger: ATGCCAGTGTGTGAATTTGATATGGTTAAAGATCCAGAAGTCCAAGACTTTCGAAGGAACATTCTGAATGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CCA 72 bp TCTTTGCAAACATTCAGAATGTTCCTTCGAAAGTCTTaGACTTCTGGATCTTTAACCATATCAAATTCACAC +
Preference number: 6 (lower is better)
Translates to: SLQTFRMFLRKS*TSGSLTISNSH
Trigger: GTGTGAATTTGATATGGTTAAAGATCCAGAAGTCCAAGACTTTCGAAGGAACATTCTGAATGTTTGCAAAGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8
CDS CAA 72 bp TTCTTTGCAAACATTCAGAATGTTCCTTCGAAAGTCTaGGACTTCTGGATCTTTAACCATATCAAATTCACA +
Preference number: 6 (lower is better)
Translates to: FFANIQNVPSKV*DFWIFNHIKFT
Trigger: TGTGAATTTGATATGGTTAAAGATCCAGAAGTCCAAGACTTTCGAAGGAACATTCTGAATGTTTGCAAAGAA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029201.14
ENSMUST00000108242.2
ENSMUST00000108243.8