Pregenerated sensors for PIH1D2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000167Ensembl transcript IDs: ENSMUST00000000171.15, ENSMUST00000125606.2, ENSMUST00000132187.2, ENSMUST00000141366.8, ENSMUST00000151197.8
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCCTTTACAACCTTTAATTCGTACGCAGGTTTCTTAACCTCCACCTaGATTTCCGAACTAGAAATCTCTTCTATAAGACATCGTCCTTTG | + |
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Preference number: 1 (lower is better) Translates to: SFTTFNSYAGFLTST*ISELEISSIRHRPL Trigger: CAAAGGACGATGTCTTATAGAAGAGATTTCTAGTTCGGAAATCCAGGTGGAGGTTAAGAAACCTGCGTACGAATTAAAGGTTGTAAAGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132187.2 |
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| 3UTR-3UTR CAA 90 bp | GCTCAATTTTCAGAGGTTTCTCGTTCCGATCCTTTACAACCTTTAATTCGTACGCCGACGCTTGCTTTTTaGTCAATAGCACCTCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: AQFSEVSRSDPLQPLIRTPTLAF*SIAPQE Trigger: TTCCTGAGGTGCTATTGACAAAAAAGCAAGCGTCGG...CGTACGAATTAAAGGTTGTAAAGGATCGGAACGAGAAACCTCTGAAAATTGAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000132187.2 |
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| 3UTR CCA 72 bp | ACCTTTAATTCGTACGCAGGTTTCTTAACCTCCACCTaGATTTCCGAACTAGAAATCTCTTCTATAAGACAT | + |
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Preference number: 3 (lower is better) Translates to: TFNSYAGFLTST*ISELEISSIRH Trigger: ATGTCTTATAGAAGAGATTTCTAGTTCGGAAATCCAGGTGGAGGTTAAGAAACCTGCGTACGAATTAAAGGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132187.2 |
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| CDS-3UTR TCA 90 bp | TTTAGGTCTGGGAAGTCAGTTTTAATGCCCATCAGACTTTCTTTCATTCTCTGGGTTGAGGTTCTGGGTTaGCACAGAGCTGTTTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: FRSGKSVLMPIRLSFILWVEVLG*HRAVCH Trigger: ATGGCAAACAGCTCTGTGTCAACCCAGAACCTCAAC...CCAGAGAATGAAAGAAAGTCTGATGGGCATTAAAACTGACTTCCCAGACCTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132187.2 |
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| CDS-3UTR TCA 90 bp | GTAGTCATTTCTGTATTAATCGATTCTGGAAGATTCAGGCATAATCGGTACATCGTCTGTATGCAGAGTTaGGGTTCTGGGTTGACACAG | + |
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Preference number: 4 (lower is better) Translates to: VVISVLIDSGRFRHNRYIVCMQS*GSGLTQ Trigger: CTGTGTCAACCCAGAACCTCAACTCTGCATACAGAC...GATGTACCGATTATGCCTGAATCTTCCAGAATCGATTAATACAGAAATGACTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132187.2 |
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| CDS-3UTR CCA 90 bp | GGAAGATTCAGGCATAATCGGTACATCTCAGAGACCTCAATCAATATATCAACCTTGGTTTTAGGATCTTaGTCTGTATGCAGAGTTGAG | + |
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Preference number: 4 (lower is better) Translates to: GRFRHNRYISETSINISTLVLGS*SVCRVE Trigger: CTCAACTCTGCATACAGACCAAGATCCTAAAACCAA...GGTTGATATATTGATTGAGGTCTCTGAGATGTACCGATTATGCCTGAATCTTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132187.2 |
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| CDS-3UTR TCA 90 bp | AACCTCCACCTGGATTTCCGAACTAGAAATCTCTTCTATAAGACATCGTCCTTTGGAATCCTTTCCCATTaGCATAGGTTGATAAAAAGT | + |
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Preference number: 4 (lower is better) Translates to: NLHLDFRTRNLFYKTSSFGILSH*HRLIKS Trigger: ACTTTTTATCAACCTATGTCAATGGGAAAGGATTCC...AAAGGACGATGTCTTATAGAAGAGATTTCTAGTTCGGAAATCCAGGTGGAGGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000132187.2 |
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| CDS-3UTR CCA 90 bp | TCAATTTTCAGAGGTTTCTCGTTCCGATCCTTTACAACCTTTAATTCGTACGCAAGCATATTCCAGAACTaGGAAATGTGGGTAAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: SIFRGFSFRSFTTFNSYASIFQN*EMWVRR Trigger: TCTTCTTACCCACATTTCCCAGTTCTGGAATATGCT...TGCGTACGAATTAAAGGTTGTAAAGGATCGGAACGAGAAACCTCTGAAAATTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132187.2 |
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| CDS TCA 90 bp | CTTTTTCTGCCGCTTGCAGAACACCAGGATTGTAGGCAACATCAATaGTGGTATAAGCATCTGATGCCTCAGCGGAGTCTTCTGGTCTGC | + |
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Preference number: 5 (lower is better) Translates to: LFLPLAEHQDCRQHQ*WYKHLMPQRSLLVC Trigger: GCAGACCAGAAGACTCCGCTGAGGCATCAGATGCTTATACCATCATTGATGTTGCCTACAATCCTGGTGTTCTGCAAGCGGCAGAAAAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000000171.15 ENSMUST00000125606.2 ENSMUST00000141366.8 ENSMUST00000151197.8 |
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| CDS CCA 90 bp | CGCTCGGGGTCATTTTCAGCCAAATCATCGAGCATATTCCAGAACTaGGAAATGTGGGTAAGAAGACCCTTTGAGGACACCGTCATGATG | + |
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Preference number: 5 (lower is better) Translates to: RSGSFSAKSSSIFQN*EMWVRRPFEDTVMM Trigger: CATCATGACGGTGTCCTCAAAGGGTCTTCTTACCCACATTTCCCAGTTCTGGAATATGCTCGATGATTTGGCTGAAAATGACCCCGAGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000141366.8 |
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| CDS-3UTR CAA 90 bp | GGAAGATTCAGGCATAATCGGTACATCTCAGAGACCTCAATCAATATATCAACCGGTCTGTATGCAGAGTaGAGGTTCTGGGTTGACACA | + |
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Preference number: 5 (lower is better) Translates to: GRFRHNRYISETSINISTGLYAE*RFWVDT Trigger: TGTGTCAACCCAGAACCTCAACTCTGCATACAGACC...GGTTGATATATTGATTGAGGTCTCTGAGATGTACCGATTATGCCTGAATCTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132187.2 |
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| CDS-3UTR CAA 90 bp | TTTAGGTCTGGGAAGTCAGTTTTAATGCCCATCAGACTTTCTTTCATTCTCTGGTTGACACAGAGCTGTTaGCCATCTTTCAACTCCTGC | + |
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Preference number: 5 (lower is better) Translates to: FRSGKSVLMPIRLSFILWLTQSC*PSFNSC Trigger: GCAGGAGTTGAAAGATGGCAAACAGCTCTGTGTCAA...CCAGAGAATGAAAGAAAGTCTGATGGGCATTAAAACTGACTTCCCAGACCTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132187.2 |
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| CDS CCA 72 bp | CTTCTGGTCTGCCAACACTTACAGGCACAGGACGAGTaGCTGACTGCGGAGCGGGAATCCTTTCCCATTGAC | + |
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Preference number: 6 (lower is better) Translates to: LLVCQHLQAQDE*LTAERESFPID Trigger: GTCAATGGGAAAGGATTCCCGCTCCGCAGTCAGCCACTCGTCCTGTGCCTGTAAGTGTTGGCAGACCAGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000000171.15 ENSMUST00000125606.2 ENSMUST00000141366.8 ENSMUST00000151197.8 |
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| CDS GCA 72 bp | TATAAGCATCTGATGCCTCAGCGGAGTCTTCTGGTCTaGCAACACTTACAGGCACAGGACGAGTGGCTGACT | + |
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Preference number: 6 (lower is better) Translates to: YKHLMPQRSLLV*QHLQAQDEWLT Trigger: AGTCAGCCACTCGTCCTGTGCCTGTAAGTGTTGGCAGACCAGAAGACTCCGCTGAGGCATCAGATGCTTATA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000000171.15 ENSMUST00000125606.2 ENSMUST00000141366.8 ENSMUST00000151197.8 |
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| CDS TCA 72 bp | CACAGAGCTGTTTGCCATCTTTCAACTCCTGCTGAATaGAGTTCCGGTAGCGCTCGGGGTCATTTTCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: HRAVCHLSTPAE*SSGSARGHFQP Trigger: TGGCTGAAAATGACCCCGAGCGCTACCGGAACTTCATTCAGCAGGAGTTGAAAGATGGCAAACAGCTCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000000171.15 ENSMUST00000125606.2 ENSMUST00000132187.2 ENSMUST00000141366.8 ENSMUST00000151197.8 |
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| CDS TCA 72 bp | CCGCTTGCAGAACACCAGGATTGTAGGCAACATCAATaGTGGTATAAGCATCTGATGCCTCAGCGGAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: PLAEHQDCRQHQ*WYKHLMPQRSL Trigger: AAGACTCCGCTGAGGCATCAGATGCTTATACCATCATTGATGTTGCCTACAATCCTGGTGTTCTGCAAGCGG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000000171.15 ENSMUST00000125606.2 ENSMUST00000141366.8 ENSMUST00000151197.8 |
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| CDS TCA 72 bp | ATTCCAGAACTGGGAAATGTGGGTAAGAAGACCCTTTaGGGACACCGTCATGATGGTGATGAGACAGGCCTT | + |
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Preference number: 6 (lower is better) Translates to: IPELGNVGKKTL*GHRHDGDETGL Trigger: AAGGCCTGTCTCATCACCATCATGACGGTGTCCTCAAAGGGTCTTCTTACCCACATTTCCCAGTTCTGGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141366.8 |
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| CDS CCA 72 bp | GCCAAATCATCGAGCATATTCCAGAACTGGGAAATGTaGGTAAGAAGACCCTTTGAGGACACCGTCATGATG | + |
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Preference number: 6 (lower is better) Translates to: AKSSSIFQNWEM*VRRPFEDTVMM Trigger: CATCATGACGGTGTCCTCAAAGGGTCTTCTTACCCACATTTCCCAGTTCTGGAATATGCTCGATGATTTGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141366.8 |
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| CDS TCA 72 bp | CGAGTGGCTGACTGCGGAGCGGGAATCCTTTCCCATTaGCATAGGTTGATAAAAAGTACTTTTTCGTTTGGT | + |
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Preference number: 6 (lower is better) Translates to: RVADCGAGILSH*HRLIKSTFSFG Trigger: ACCAAACGAAAAAGTACTTTTTATCAACCTATGTCAATGGGAAAGGATTCCCGCTCCGCAGTCAGCCACTCG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 5 transcripts: ENSMUST00000000171.15 ENSMUST00000125606.2 ENSMUST00000132187.2 ENSMUST00000141366.8 ENSMUST00000151197.8 |
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| CDS CCA 72 bp | TCATTTTCAGCCAAATCATCGAGCATATTCCAGAACTaGGAAATGTGGGTAAGAAGACCCTTTGAGGACACC | + |
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Preference number: 6 (lower is better) Translates to: SFSAKSSSIFQN*EMWVRRPFEDT Trigger: GGTGTCCTCAAAGGGTCTTCTTACCCACATTTCCCAGTTCTGGAATATGCTCGATGATTTGGCTGAAAATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000000171.15 ENSMUST00000125606.2 ENSMUST00000132187.2 ENSMUST00000141366.8 ENSMUST00000151197.8 |
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