Pregenerated sensors for PIGW (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045140Ensembl transcript IDs: ENSMUST00000067058.3, ENSMUST00000108080.3
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ATTCACCTTCCAGTGTCAAAACTATCAACAAGTGGGTGTGGTGGCTCACGCCTGGTAAGAGTACAACTGTaGACTCCAGGCAAAGCAAAA | + |
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Preference number: 2 (lower is better) Translates to: IHLPVSKLSTSGCGGSRLVRVQL*TPGKAK Trigger: TTTTGCTTTGCCTGGAGTTCACAGTTGTACTCTTAC...CAGGCGTGAGCCACCACACCCACTTGTTGATAGTTTTGACACTGGAAGGTGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| 3UTR CAA 90 bp | CAGAGATCCGCCTGCCTCTGCCTCCCATGTTCTGGGATTAAAGCTTaGTGCCACTTCTTTTGGCTTATTTTACATAATGTTGATATGTAT | + |
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Preference number: 2 (lower is better) Translates to: QRSACLCLPCSGIKA*CHFFWLILHNVDMY Trigger: ATACATATCAACATTATGTAAAATAAGCCAAAAGAAGTGGCACAAAGCTTTAATCCCAGAACATGGGAGGCAGAGGCAGGCGGATCTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| 3UTR-3UTR CAA 90 bp | ATTCACCTTCCAGTGTCAAAACTATCAACAAGTGGGTGTGGTGGCTCACGCCTGATGGTTAAGACTAGATaGCTAAGAACACATTTCCTC | + |
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Preference number: 3 (lower is better) Translates to: IHLPVSKLSTSGCGGSRLMVKTR*LRTHFL Trigger: GAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCAT...CAGGCGTGAGCCACCACACCCACTTGTTGATAGTTTTGACACTGGAAGGTGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| 3UTR GCA 72 bp | TGCCTCTGCCTCCCATGTTCTGGGATTAAAGCTTTGTaGCACTTCTTTTGGCTTATTTTACATAATGTTGAT | + |
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Preference number: 3 (lower is better) Translates to: CLCLPCSGIKAL*HFFWLILHNVD Trigger: ATCAACATTATGTAAAATAAGCCAAAAGAAGTGGCACAAAGCTTTAATCCCAGAACATGGGAGGCAGAGGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS-3UTR GCA 90 bp | ATTCACCTTCCAGTGTCAAAACTATCAACAAGTGGGTGTGGTGGCTCACGCCTGTGCCACTGCCATCAGTaGCATACAAAAGTATCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: IHLPVSKLSTSGCGGSRLCHCHQ*HTKVSS Trigger: AGAGGATACTTTTGTATGGCACTGATGGCAGTGGCA...CAGGCGTGAGCCACCACACCCACTTGTTGATAGTTTTGACACTGGAAGGTGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS-3UTR CCA 90 bp | CTCCCATGTTCTGGGATTAAAGCTTTGTGCCACTTCTTTTGGCTTATTTTACATGGAAAGCACAGGCCCTaGGTCACTTCCAGCACACTG | + |
|
Preference number: 4 (lower is better) Translates to: LPCSGIKALCHFFWLILHGKHRP*VTSSTL Trigger: CAGTGTGCTGGAAGTGACCCAGGGCCTGTGCTTTCC...ATGTAAAATAAGCCAAAAGAAGTGGCACAAAGCTTTAATCCCAGAACATGGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS-3UTR CCA 90 bp | ATTCACCTTCCAGTGTCAAAACTATCAACAAGTGGGTGTGGTGGCTCACGCCTGTCACATACCCCAAAGTaGAAATTATTCCCTCTCGGT | + |
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Preference number: 4 (lower is better) Translates to: IHLPVSKLSTSGCGGSRLSHTPK*KLFPLG Trigger: ACCGAGAGGGAATAATTTCCACTTTGGGGTATGTGA...CAGGCGTGAGCCACCACACCCACTTGTTGATAGTTTTGACACTGGAAGGTGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS-3UTR GCA 90 bp | ATTCACCTTCCAGTGTCAAAACTATCAACAAGTGGGTGTGGTGGCTCACGCCTGTACTCCAAAATCCATTaGTCCTGTCCCATAAAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: IHLPVSKLSTSGCGGSRLYSKIH*SCPIKF Trigger: GAACTTTATGGGACAGGAGCAATGGATTTTGGAGTA...CAGGCGTGAGCCACCACACCCACTTGTTGATAGTTTTGACACTGGAAGGTGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS-3UTR CCA 90 bp | GCCTCCCATGTTCTGGGATTAAAGCTTTGTGCCACTTCTTTTGGCTTATTTTACTTTCCTTCTAACCTCTaGACAAACCATTGCCGCCCC | + |
|
Preference number: 4 (lower is better) Translates to: ASHVLGLKLCATSFGLFYFPSNL*TNHCRP Trigger: GGGGCGGCAATGGTTTGTCCAGAGGTTAGAAGGAAA...GTAAAATAAGCCAAAAGAAGTGGCACAAAGCTTTAATCCCAGAACATGGGAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS-3UTR GCA 90 bp | GCCTCCCATGTTCTGGGATTAAAGCTTTGTGCCACTTCTTTTGGCTTATTTTACCTCTGGACAAACCATTaGCGCCCCAAAAATAAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: ASHVLGLKLCATSFGLFYLWTNH*RPKNKA Trigger: GGCTTTATTTTTGGGGCGGCAATGGTTTGTCCAGAG...GTAAAATAAGCCAAAAGAAGTGGCACAAAGCTTTAATCCCAGAACATGGGAGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS-3UTR GCA 90 bp | ATTCACCTTCCAGTGTCAAAACTATCAACAAGTGGGTGTGGTGGCTCACGCCTGCATTCTTCGAGATACTaGTTCTATGTTTACTTGCAC | + |
|
Preference number: 4 (lower is better) Translates to: IHLPVSKLSTSGCGGSRLHSSRY*FYVYLH Trigger: GTGCAAGTAAACATAGAAGCAGTATCTCGAAGAATG...CAGGCGTGAGCCACCACACCCACTTGTTGATAGTTTTGACACTGGAAGGTGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS-3UTR CCA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTGGAAAGCACAGGCCCTaGGTCACTTCCAGCACACTG | + |
|
Preference number: 4 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSGKHRP*VTSSTL Trigger: CAGTGTGCTGGAAGTGACCCAGGGCCTGTGCTTTCC...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR TCA 90 bp | GCCTCCCATGTTCTGGGATTAAAGCTTTGTGCCACTTCTTTTGGCTTATTTTACACAATACAGTCAGAGTaGTCACTAGGGGGACTATCA | + |
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Preference number: 4 (lower is better) Translates to: ASHVLGLKLCATSFGLFYTIQSE*SLGGLS Trigger: TGATAGTCCCCCTAGTGATCACTCTGACTGTATTGT...GTAAAATAAGCCAAAAGAAGTGGCACAAAGCTTTAATCCCAGAACATGGGAGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| 3UTR CAA 72 bp | GCCTGCCTCTGCCTCCCATGTTCTGGGATTAAAGCTTaGTGCCACTTCTTTTGGCTTATTTTACATAATGTT | + |
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Preference number: 4 (lower is better) Translates to: ACLCLPCSGIKA*CHFFWLILHNV Trigger: AACATTATGTAAAATAAGCCAAAAGAAGTGGCACAAAGCTTTAATCCCAGAACATGGGAGGCAGAGGCAGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS-3UTR TCA 90 bp | CTCCCATGTTCTGGGATTAAAGCTTTGTGCCACTTCTTTTGGCTTATTTTACATATACCACAGTTATGCTaGCAGCCACAATCCACGACT | + |
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Preference number: 4 (lower is better) Translates to: LPCSGIKALCHFFWLILHIPQLC*QPQSTT Trigger: AGTCGTGGATTGTGGCTGTCAGCATAACTGTGGTAT...ATGTAAAATAAGCCAAAAGAAGTGGCACAAAGCTTTAATCCCAGAACATGGGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS-3UTR GCA 90 bp | CTCCCATGTTCTGGGATTAAAGCTTTGTGCCACTTCTTTTGGCTTATTTTACATCAACCCTTGTGCCACTaGCATCAGTGCCATACAAAA | + |
|
Preference number: 4 (lower is better) Translates to: LPCSGIKALCHFFWLILHQPLCH*HQCHTK Trigger: TTTTGTATGGCACTGATGGCAGTGGCACAAGGGTTG...ATGTAAAATAAGCCAAAAGAAGTGGCACAAAGCTTTAATCCCAGAACATGGGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS-3UTR TCA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTCGTGCTGTGAGAAGATaGTCCAAAGGCCTCTACACA | + |
|
Preference number: 4 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSRAVRR*SKGLYT Trigger: TGTGTAGAGGCCTTTGGATCATCTTCTCACAGCACG...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR GCA 90 bp | CTCCCATGTTCTGGGATTAAAGCTTTGTGCCACTTCTTTTGGCTTATTTTACATCCAGTCTCTGACTTGTaGTCTTCCCTTAAGCACATA | + |
|
Preference number: 4 (lower is better) Translates to: LPCSGIKALCHFFWLILHPVSDL*SSLKHI Trigger: TATGTGCTTAAGGGAAGAGCACAAGTCAGAGACTGG...ATGTAAAATAAGCCAAAAGAAGTGGCACAAAGCTTTAATCCCAGAACATGGGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS-3UTR CCA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTTTTCCTTCTAACCTCTaGACAAACCATTGCCGCCCC | + |
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Preference number: 4 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSFPSNL*TNHCRP Trigger: GGGGCGGCAATGGTTTGTCCAGAGGTTAGAAGGAAA...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR TCA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTGAAGCCAACAGCTACTaGGAAAACCCAACAAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSEANSY*ENPTSS Trigger: GCTACTTGTTGGGTTTTCTCAGTAGCTGTTGGCTTC...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR GCA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTCTCTGGACAAACCATTaGCGCCCCAAAAATAAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSLWTNH*RPKNKA Trigger: GGCTTTATTTTTGGGGCGGCAATGGTTTGTCCAGAG...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR GCA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTCAACCCTTGTGCCACTaGCATCAGTGCCATACAAAA | + |
|
Preference number: 4 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSQPLCH*HQCHTK Trigger: TTTTGTATGGCACTGATGGCAGTGGCACAAGGGTTG...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR TCA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTACAATACAGTCAGAGTaGTCACTAGGGGGACTATCA | + |
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Preference number: 4 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSTIQSE*SLGGLS Trigger: TGATAGTCCCCCTAGTGATCACTCTGACTGTATTGT...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR GCA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTTGCCACTGCCATCAGTaGCATACAAAAGTATCCTCT | + |
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Preference number: 4 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSCHCHQ*HTKVSS Trigger: AGAGGATACTTTTGTATGGCACTGATGGCAGTGGCA...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR GCA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTCCAGTCTCTGACTTGTaGTCTTCCCTTAAGCACATA | + |
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Preference number: 4 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSPVSDL*SSLKHI Trigger: TATGTGCTTAAGGGAAGAGCACAAGTCAGAGACTGG...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR TCA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTTTCTGTTCAGAGCTGTaGTCAAACAAAGACTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSFCSEL*SNKDWV Trigger: AACCCAGTCTTTGTTTGATCACAGCTCTGAACAGAA...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR GCA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTTACTCCAAAATCCATTaGTCCTGTCCCATAAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSYSKIH*SCPIKF Trigger: GAACTTTATGGGACAGGAGCAATGGATTTTGGAGTA...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR CCA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTGACAAAAGGCTAAATTaGCCATTCTTCGAGATACTG | + |
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Preference number: 4 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSDKRLN*PFFEIL Trigger: CAGTATCTCGAAGAATGGCCAATTTAGCCTTTTGTC...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR TCA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTACTCAGATTCTAGGCTaGTTTTCAAGAAGTTTGCAA | + |
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Preference number: 4 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSTQILG*FSRSLQ Trigger: TTGCAAACTTCTTGAAAATCAGCCTAGAATCTGAGT...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR GCA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTGATTTTCAAGAAGTTTaGAAAGACTTTCTGGACAGG | + |
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Preference number: 4 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSDFQEV*KDFLDR Trigger: CCTGTCCAGAAAGTCTTTGCAAACTTCTTGAAAATC...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR GCA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTCATTCTTCGAGATACTaGTTCTATGTTTACTTGCAC | + |
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Preference number: 4 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSHSSRY*FYVYLH Trigger: GTGCAAGTAAACATAGAAGCAGTATCTCGAAGAATG...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS CCA 90 bp | CAAAGGCCTCTACACAGGATACAGAAGGCAGGAAAGCACAGGCCCTaGGTCACTTCCAGCACACTGGTCCCACTGAGGTTCCTGACAAAG | + |
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Preference number: 5 (lower is better) Translates to: QRPLHRIQKAGKHRP*VTSSTLVPLRFLTK Trigger: CTTTGTCAGGAACCTCAGTGGGACCAGTGTGCTGGAAGTGACCCAGGGCCTGTGCTTTCCTGCCTTCTGTATCCTGTGTAGAGGCCTTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS GCA 90 bp | TTTGGCGTAGCAAGTCCTCCTGTGGTATATCTGATACAACAGCCATaGCCCCCAGACAATCACAGTGAGATTCTCGAGGAGGATAAAGGA | + |
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Preference number: 5 (lower is better) Translates to: FGVASPPVVYLIQQP*PPDNHSEILEEDKG Trigger: TCCTTTATCCTCCTCGAGAATCTCACTGTGATTGTCTGGGGGGCATGGCTGTTGTATCAGATATACCACAGGAGGACTTGCTACGCCAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR CAA 90 bp | ATTCACCTTCCAGTGTCAAAACTATCAACAAGTGGGTGTGGTGGCTCACGCCTGTATCCAGTCTCTGACTaGTGCTCTTCCCTTAAGCAC | + |
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Preference number: 5 (lower is better) Translates to: IHLPVSKLSTSGCGGSRLYPVSD*CSSLKH Trigger: GTGCTTAAGGGAAGAGCACAAGTCAGAGACTGGATA...CAGGCGTGAGCCACCACACCCACTTGTTGATAGTTTTGACACTGGAAGGTGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS GCA 90 bp | TCCATGAGGAATCGTGTGCTCCAGGTGTTTGAGAAAGAGCATACGTaGTGTGAGAAGATGATCCAAAGGCCTCTACACAGGATACAGAAG | + |
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Preference number: 5 (lower is better) Translates to: SMRNRVLQVFEKEHT*CEKMIQRPLHRIQK Trigger: CTTCTGTATCCTGTGTAGAGGCCTTTGGATCATCTTCTCACAGCACGTATGCTCTTTCTCAAACACCTGGAGCACACGATTCCTCATGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR CAA 90 bp | ATTCACCTTCCAGTGTCAAAACTATCAACAAGTGGGTGTGGTGGCTCACGCCTGCTACTCCAAAATCCATaGCTCCTGTCCCATAAAGTT | + |
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Preference number: 5 (lower is better) Translates to: IHLPVSKLSTSGCGGSRLLLQNP*LLSHKV Trigger: AACTTTATGGGACAGGAGCAATGGATTTTGGAGTAG...CAGGCGTGAGCCACCACACCCACTTGTTGATAGTTTTGACACTGGAAGGTGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS-3UTR CAA 90 bp | CTCCCATGTTCTGGGATTAAAGCTTTGTGCCACTTCTTTTGGCTTATTTTACATGTGTGCTCCAGGTGTTaGAGAAAGAGCATACGTGCT | + |
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Preference number: 5 (lower is better) Translates to: LPCSGIKALCHFFWLILHVCSRC*RKSIRA Trigger: AGCACGTATGCTCTTTCTCAAACACCTGGAGCACAC...ATGTAAAATAAGCCAAAAGAAGTGGCACAAAGCTTTAATCCCAGAACATGGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS-3UTR CAA 90 bp | CTCCCATGTTCTGGGATTAAAGCTTTGTGCCACTTCTTTTGGCTTATTTTACATCACCAGCCATGTGTATaGTCACATACCCCAAAGTGG | + |
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Preference number: 5 (lower is better) Translates to: LPCSGIKALCHFFWLILHHQPCV*SHTPKW Trigger: CCACTTTGGGGTATGTGACAATACACATGGCTGGTG...ATGTAAAATAAGCCAAAAGAAGTGGCACAAAGCTTTAATCCCAGAACATGGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000067058.3 |
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| CDS CCA 90 bp | GAAGCATCAGACTGGAAGCAACTACCCACAGACAAAAGGCTAAATTaGCCATTCTTCGAGATACTGCTTCTATGTTTACTTGCACTATAT | + |
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Preference number: 5 (lower is better) Translates to: EASDWKQLPTDKRLN*PFFEILLLCLLALY Trigger: ATATAGTGCAAGTAAACATAGAAGCAGTATCTCGAAGAATGGCCAATTTAGCCTTTTGTCTGTGGGTAGTTGCTTCCAGTCTGATGCTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR CAA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTGTGTGCTCCAGGTGTTaGAGAAAGAGCATACGTGCT | + |
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Preference number: 5 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSVCSRC*RKSIRA Trigger: AGCACGTATGCTCTTTCTCAAACACCTGGAGCACAC...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR CAA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTCAGGTGATTGCGGGATaGTACTCAGATTCTAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSQVIAG*YSDSRL Trigger: CAGCCTAGAATCTGAGTACAATCCCGCAATCACCTG...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR CAA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTCACCAGCCATGTGTATaGTCACATACCCCAAAGTGG | + |
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Preference number: 5 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSHQPCV*SHTPKW Trigger: CCACTTTGGGGTATGTGACAATACACATGGCTGGTG...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS TCA 90 bp | GTTTACTTGCACTATATGAAGAGAAATGAAGAAGCCAACAGCTACTaGGAAAACCCAACAAGTAGCTTTTATCCAGTCTCTGACTTGTGC | + |
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Preference number: 5 (lower is better) Translates to: VYLHYMKRNEEANSY*ENPTSSFYPVSDLC Trigger: GCACAAGTCAGAGACTGGATAAAAGCTACTTGTTGGGTTTTCTCAGTAGCTGTTGGCTTCTTCATTTCTCTTCATATAGTGCAAGTAAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR CAA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTTATCCAGTCTCTGACTaGTGCTCTTCCCTTAAGCAC | + |
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Preference number: 5 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSYPVSD*CSSLKH Trigger: GTGCTTAAGGGAAGAGCACAAGTCAGAGACTGGATA...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR CAA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTCACATACAATCCCGTTaGTACACCAGCCATGTGTAT | + |
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Preference number: 5 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSHIQSR*YTSHVY Trigger: ATACACATGGCTGGTGTACAAACGGGATTGTATGTG...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR CAA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTCTACTCCAAAATCCATaGCTCCTGTCCCATAAAGTT | + |
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Preference number: 5 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSLLQNP*LLSHKV Trigger: AACTTTATGGGACAGGAGCAATGGATTTTGGAGTAG...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS-3UTR CAA 90 bp | AGTATGGTTAAGACTAGATTGCTAAGAACACATTTCCTCCCTTCTTATTCTTCTAGACAAAAGGCTAAATaGGCCATTCTTCGAGATACT | + |
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Preference number: 5 (lower is better) Translates to: SMVKTRLLRTHFLPSYSSRQKAK*AILRDT Trigger: AGTATCTCGAAGAATGGCCAATTTAGCCTTTTGTCT...AGAAGAATAAGAAGGGAGGAAATGTGTTCTTAGCAATCTAGTCTTAACCATACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS GCA 72 bp | GCAAGTCCTCCTGTGGTATATCTGATACAACAGCCATaGCCCCCAGACAATCACAGTGAGATTCTCGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: ASPPVVYLIQQP*PPDNHSEILEE Trigger: CTCCTCGAGAATCTCACTGTGATTGTCTGGGGGGCATGGCTGTTGTATCAGATATACCACAGGAGGACTTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS CAA 72 bp | GACTTGTGCTCTTCCCTTAAGCACATACAATCCCGTTaGTACACCAGCCATGTGTATTGTCACATACCCCAA | + |
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Preference number: 6 (lower is better) Translates to: DLCSSLKHIQSR*YTSHVYCHIPQ Trigger: TTGGGGTATGTGACAATACACATGGCTGGTGTACAAACGGGATTGTATGTGCTTAAGGGAAGAGCACAAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS CAA 72 bp | GCACATACAATCCCGTTTGTACACCAGCCATGTGTATaGTCACATACCCCAAAGTGGAAATTATTCCCTCTC | + |
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Preference number: 6 (lower is better) Translates to: AHTIPFVHQPCV*SHTPKWKLFPL Trigger: GAGAGGGAATAATTTCCACTTTGGGGTATGTGACAATACACATGGCTGGTGTACAAACGGGATTGTATGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS CAA 90 bp | AGAAGCATCAGACTGGAAGCAACTACCCACAGACAAAAGGCTAAATaGGCCATTCTTCGAGATACTGCTTCTATGTTTACTTGCACTATA | + |
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Preference number: 6 (lower is better) Translates to: RSIRLEATTHRQKAK*AILRDTASMFTCTI Trigger: TATAGTGCAAGTAAACATAGAAGCAGTATCTCGAAGAATGGCCAATTTAGCCTTTTGTCTGTGGGTAGTTGCTTCCAGTCTGATGCTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS TCA 72 bp | TATAATCCAGGGCTAGCTGGTATACCACAGTTATGCTaGCAGCCACAATCCACGACTTATTTAAAGGAAAAA | + |
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Preference number: 6 (lower is better) Translates to: YNPGLAGIPQLC*QPQSTTYLKEK Trigger: TTTTTCCTTTAAATAAGTCGTGGATTGTGGCTGTCAGCATAACTGTGGTATACCAGCTAGCCCTGGATTATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS TCA 72 bp | CACTATATGAAGAGAAATGAAGAAGCCAACAGCTACTaGGAAAACCCAACAAGTAGCTTTTATCCAGTCTCT | + |
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Preference number: 6 (lower is better) Translates to: HYMKRNEEANSY*ENPTSSFYPVS Trigger: AGAGACTGGATAAAAGCTACTTGTTGGGTTTTCTCAGTAGCTGTTGGCTTCTTCATTTCTCTTCATATAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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| CDS TCA 72 bp | CTGCTTCTATGTTTACTTGCACTATATGAAGAGAAATaGAGAAGCCAACAGCTACTGAGAAAACCCAACAAG | + |
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Preference number: 6 (lower is better) Translates to: LLLCLLALYEEK*RSQQLLRKPNK Trigger: CTTGTTGGGTTTTCTCAGTAGCTGTTGGCTTCTTCATTTCTCTTCATATAGTGCAAGTAAACATAGAAGCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067058.3 ENSMUST00000108080.3 |
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