Pregenerated sensors for PIGV (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043257Ensembl transcript IDs: ENSMUST00000062118.11, ENSMUST00000067902.13
Found 121 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAATGCTCGTTGGCCAGGCTGGCTGGAGGCTCCCACAGAGGGTGCTaGGCCTGGGCCAGGAGCTTCCCTTCAGCTGGCAAGTTGAGCTTT | + |
|
Preference number: 1 (lower is better) Translates to: ECSLARLAGGSHRGC*AWARSFPSAGKLSF Trigger: AAAGCTCAACTTGCCAGCTGAAGGGAAGCTCCTGGCCCAGGCCCAGCACCCTCTGTGGGAGCCTCCAGCCAGCCTGGCCAACGAGCATTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR GCA 90 bp | CTTCTTAGCTGGCCCCCAGAGAGACCCAGAGATCCTACTGCACAGTaGTCTCCGGAGTGTGCGGGCTGTCCCAGCCAGGGTGTCGTCTTA | + |
|
Preference number: 1 (lower is better) Translates to: LLSWPPERPRDPTAQ*SPECAGCPSQGVVL Trigger: TAAGACGACACCCTGGCTGGGACAGCCCGCACACTCCGGAGAGCACTGTGCAGTAGGATCTCTGGGTCTCTCTGGGGGCCAGCTAAGAAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| 3UTR GCA 90 bp | CCCAGAGAGACCCAGAGATCCTACTGCACAGTGCTCTCCGGAGTGTaGGGGCTGTCCCAGCCAGGGTGTCGTCTTAGAGCTTTCATTCCT | + |
|
Preference number: 1 (lower is better) Translates to: PRETQRSYCTVLSGV*GLSQPGCRLRAFIP Trigger: AGGAATGAAAGCTCTAAGACGACACCCTGGCTGGGACAGCCCGCACACTCCGGAGAGCACTGTGCAGTAGGATCTCTGGGTCTCTCTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| 3UTR TCA 90 bp | AGAGCAGGCTGTCTGTCCCCTCTTCCTTCTGTCACTACACTGCACTaGCTCCACCATCCTGAGTGGGGCAGGCTGTTGGCCTGTGCTTTG | + |
|
Preference number: 1 (lower is better) Translates to: RAGCLSPLPSVTTLH*LHHPEWGRLLACAL Trigger: CAAAGCACAGGCCAACAGCCTGCCCCACTCAGGATGGTGGAGTCAGTGCAGTGTAGTGACAGAAGGAAGAGGGGACAGACAGCCTGCTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR GCA 90 bp | CACTTAGAGCAGGCTGTCTGTCCCCTCTTCCTTCTGTCACTACACTaGACTGACTCCACCATCCTGAGTGGGGCAGGCTGTTGGCCTGTG | + |
|
Preference number: 1 (lower is better) Translates to: HLEQAVCPLFLLSLH*TDSTILSGAGCWPV Trigger: CACAGGCCAACAGCCTGCCCCACTCAGGATGGTGGAGTCAGTGCAGTGTAGTGACAGAAGGAAGAGGGGACAGACAGCCTGCTCTAAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR TCA 90 bp | AGGCAGAGGGCTGCCCCAATCTGTGTGTACATTTTCAGTAGCATTTaGCTCTGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTGCTGG | + |
|
Preference number: 1 (lower is better) Translates to: RQRAAPICVYIFSSI*LWTKCLAVLVLWCW Trigger: CCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCAGAGTCAAATGCTACTGAAAATGTACACACAGATTGGGGCAGCCCTCTGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR TCA 90 bp | GTCCCCTCTTCCTTCTGTCACTACACTGCACTGACTCCACCATCCTaGGTGGGGCAGGCTGTTGGCCTGTGCTTTGATCAAACATTTAAA | + |
|
Preference number: 1 (lower is better) Translates to: VPSSFCHYTALTPPS*VGQAVGLCFDQTFK Trigger: TTTAAATGTTTGATCAAAGCACAGGCCAACAGCCTGCCCCACTCAGGATGGTGGAGTCAGTGCAGTGTAGTGACAGAAGGAAGAGGGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR CCA 90 bp | CACAGACACACACACACCAGTATCATAAAGAAAACTTCAGGGAGCTaGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCCAGA | + |
|
Preference number: 1 (lower is better) Translates to: HRHTHTSIIKKTSGS*RDGSVVKSTGCSSR Trigger: TCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCTCCCTGAAGTTTTCTTTATGATACTGGTGTGTGTGTGTCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR TCA 90 bp | AAGGCAAAAGCTCTGAAGGTGGCTTTAGATCATACAGCTGGAAAGTaGGGAATGGGAGCCAAGATTCAGACCCTGTGCTCTGATCCAAGT | + |
|
Preference number: 1 (lower is better) Translates to: KAKALKVALDHTAGK*GMGAKIQTLCSDPS Trigger: ACTTGGATCAGAGCACAGGGTCTGAATCTTGGCTCCCATTCCTCACTTTCCAGCTGTATGATCTAAAGCCACCTTCAGAGCTTTTGCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR-3UTR GCA 90 bp | CCCGCCCAGGATGAGAAGGGGCGCCTGTGCTCCCATTTTCCCTTCTTAGCTGGCACCCAGAGATCCTACTaGACAGTGCTCTCCGGAGTG | + |
|
Preference number: 2 (lower is better) Translates to: PAQDEKGRLCSHFPFLAGTQRSY*TVLSGV Trigger: CACTCCGGAGAGCACTGTGCAGTAGGATCTCTGGGT...GCCAGCTAAGAAGGGAAAATGGGAGCACAGGCGCCCCTTCTCATCCTGGGCGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| 3UTR-3UTR GCA 90 bp | CTTGGCTGTGCTAGTGCTGTGGTGCTGGGTGGGAATGCTCGTTGGCCAGGCTGGGAGAAGGGGCGCCTGTaGTCCCATTTTCCCTTCTTA | + |
|
Preference number: 2 (lower is better) Translates to: LGCASAVVLGGNARWPGWEKGRL*SHFPFL Trigger: TAAGAAGGGAAAATGGGAGCACAGGCGCCCCTTCTC...CCAGCCTGGCCAACGAGCATTCCCACCCAGCACCACAGCACTAGCACAGCCAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR-3UTR GCA 90 bp | GGCCAGGAGCTTCCCTTCAGCTGGCAAGTTGAGCTTTCTGTCACGGTCGGAGGGGTTAAGAGCACTGGCTaGTCTTCCAGAGGTCCTGAG | + |
|
Preference number: 2 (lower is better) Translates to: GQELPFSWQVELSVTVGGVKSTG*SSRGPE Trigger: CTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAAC...CCCTCCGACCGTGACAGAAAGCTCAACTTGCCAGCTGAAGGGAAGCTCCTGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR-3UTR TCA 90 bp | TGGTGTTTATTACTGAAATTAGGGCCTCGTGTGCTTTACTACGGAGTTCTAGCCCTGCCCCGCCCAGGATaGGAAGGGGCGCCTGTGCTC | + |
|
Preference number: 2 (lower is better) Translates to: WCLLLKLGPRVLYYGVLALPRPG*EGAPVL Trigger: GAGCACAGGCGCCCCTTCTCATCCTGGGCGGGGCAG...GGCTAGAACTCCGTAGTAAAGCACACGAGGCCCTAATTTCAGTAATAAACACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR-3UTR GCA 90 bp | GCTCAGTGGTTAAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCTTACTCCCCTACACCTaGCCCGCCCAGGATGAGAAG | + |
|
Preference number: 2 (lower is better) Translates to: AQWLRALAALPEVLSSIPLLPYT*PAQDEK Trigger: CTTCTCATCCTGGGCGGGGCAGGTGTAGGGGAGTAA...GGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR-3UTR GCA 90 bp | CTCTGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTGCTGGGTGGGAATGCTCCTTCTGTCACTACACTaGACTGACTCCACCATCCTG | + |
|
Preference number: 2 (lower is better) Translates to: LWTKCLAVLVLWCWVGMLLLSLH*TDSTIL Trigger: CAGGATGGTGGAGTCAGTGCAGTGTAGTGACAGAAG...GAGCATTCCCACCCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR-3UTR CCA 90 bp | TTGACTCTGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTGCTGGGTGGGAATCAAGCCTCAGCATCCTaGAGTCATCCTTCCTCAGGG | + |
|
Preference number: 2 (lower is better) Translates to: LTLDQMLGCASAVVLGGNQASAS*SHPSSG Trigger: CCCTGAGGAAGGATGACTCCAGGATGCTGAGGCTTG...ATTCCCACCCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCAGAGTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR-3UTR TCA 90 bp | TTGACTCTGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTGCTGGGTGGGAATAGGCAGATGAATCTCTaGGTTCAAGGCCAGCCTGGT | + |
|
Preference number: 2 (lower is better) Translates to: LTLDQMLGCASAVVLGGNRQMNL*VQGQPG Trigger: ACCAGGCTGGCCTTGAACTCAGAGATTCATCTGCCT...ATTCCCACCCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCAGAGTCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR-3UTR TCA 90 bp | TGTCTTGGCAGAAGGCAGAGGGCTGCCCCAATCTGTGTGTACATTTTCAGTAGCCTCTTCCAGAGGTCCTaGGTTCAATTCCCAGCAGCC | + |
|
Preference number: 2 (lower is better) Translates to: CLGRRQRAAPICVYIFSSLFQRS*VQFPAA Trigger: GGCTGCTGGGAATTGAACTCAGGACCTCTGGAAGAG...GCTACTGAAAATGTACACACAGATTGGGGCAGCCCTCTGCCTTCTGCCAAGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR-3UTR CCA 90 bp | TGTCTTTTGCCAAGAAGGGCACTTGGTGTCTTGGCAGAAGGCAGAGGGCTGCCCAAGAATGCTGCTTATTaGAATTTTTGGCCCAATGGG | + |
|
Preference number: 2 (lower is better) Translates to: CLLPRRALGVLAEGRGLPKNAAY*NFWPNG Trigger: CCCATTGGGCCAAAAATTCCAATAAGCAGCATTCTT...GGGCAGCCCTCTGCCTTCTGCCAAGACACCAAGTGCCCTTCTTGGCAAAAGACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR-3UTR TCA 90 bp | TTGACTCTGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTGCTGGGTGGGAATCCATTAGACCACTTGTaGGCCTCCATTTATCTTTTG | + |
|
Preference number: 2 (lower is better) Translates to: LTLDQMLGCASAVVLGGNPLDHL*ASIYLL Trigger: CAAAAGATAAATGGAGGCTCACAAGTGGTCTAATGG...ATTCCCACCCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCAGAGTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR-3UTR CCA 90 bp | TTGACTCTGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTGCTGGGTGGGAATTTTAGATCATACAGCTaGAAAGTGAGGAATGGGAGC | + |
|
Preference number: 2 (lower is better) Translates to: LTLDQMLGCASAVVLGGNFRSYS*KVRNGS Trigger: GCTCCCATTCCTCACTTTCCAGCTGTATGATCTAAA...ATTCCCACCCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCAGAGTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR-3UTR CCA 90 bp | TGTCTTGGCAGAAGGCAGAGGGCTGCCCCAATCTGTGTGTACATTTTCAGTAGCTACAGTAGACAACCTTaGACTGACTTAGCTACAAGG | + |
|
Preference number: 2 (lower is better) Translates to: CLGRRQRAAPICVYIFSSYSRQP*TDLATR Trigger: CCTTGTAGCTAAGTCAGTCCAAGGTTGTCTACTGTA...GCTACTGAAAATGTACACACAGATTGGGGCAGCCCTCTGCCTTCTGCCAAGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR-3UTR GCA 90 bp | GTGGTGTTTATTACTGAAATTAGGGCCTCGTGTGCTTTACTACGGAGTTCTAGCCAGGCTGTTGGCCTGTaGTTTGATCAAACATTTAAA | + |
|
Preference number: 2 (lower is better) Translates to: VVFITEIRASCALLRSSSQAVGL*FDQTFK Trigger: TTTAAATGTTTGATCAAAGCACAGGCCAACAGCCTG...GCTAGAACTCCGTAGTAAAGCACACGAGGCCCTAATTTCAGTAATAAACACCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR GCA 72 bp | TGGCCCCCAGAGAGACCCAGAGATCCTACTGCACAGTaGTCTCCGGAGTGTGCGGGCTGTCCCAGCCAGGGT | + |
|
Preference number: 3 (lower is better) Translates to: WPPERPRDPTAQ*SPECAGCPSQG Trigger: ACCCTGGCTGGGACAGCCCGCACACTCCGGAGAGCACTGTGCAGTAGGATCTCTGGGTCTCTCTGGGGGCCA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| 3UTR GCA 72 bp | CTCTGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTaGTGGGTGGGAATGCTCGTTGGCCAGGCTGGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: LWTKCLAVLVLW*WVGMLVGQAGW Trigger: CCAGCCAGCCTGGCCAACGAGCATTCCCACCCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCAGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR CCA 72 bp | TGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTGCTaGGTGGGAATGCTCGTTGGCCAGGCTGGCTGGAGG | + |
|
Preference number: 3 (lower is better) Translates to: WTKCLAVLVLWC*VGMLVGQAGWR Trigger: CCTCCAGCCAGCCTGGCCAACGAGCATTCCCACCCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR TCA 72 bp | TGTCTGTCCCCTCTTCCTTCTGTCACTACACTGCACTaGCTCCACCATCCTGAGTGGGGCAGGCTGTTGGCC | + |
|
Preference number: 3 (lower is better) Translates to: CLSPLPSVTTLH*LHHPEWGRLLA Trigger: GGCCAACAGCCTGCCCCACTCAGGATGGTGGAGTCAGTGCAGTGTAGTGACAGAAGGAAGAGGGGACAGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR GCA 72 bp | AGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTaGTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAG | + |
|
Preference number: 3 (lower is better) Translates to: SWRDGSVVKSTG*SSRGPEFNSQQ Trigger: CTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR CCA 72 bp | GGTGTTGTCTTTTGCCAAGAAGGGCACTTGGTGTCTTaGCAGAAGGCAGAGGGCTGCCCCAATCTGTGTGTA | + |
|
Preference number: 3 (lower is better) Translates to: GVVFCQEGHLVS*QKAEGCPNLCV Trigger: TACACACAGATTGGGGCAGCCCTCTGCCTTCTGCCAAGACACCAAGTGCCCTTCTTGGCAAAAGACAACACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR TCA 72 bp | GCCACATGGTGGCTCACAACCATCTGCAATGGGATCTaGTGCCCTCTTCTGGTGTGTCTGAAGACAGCTAGT | + |
|
Preference number: 3 (lower is better) Translates to: ATWWLTTICNGI*CPLLVCLKTAS Trigger: ACTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTGCAGATGGTTGTGAGCCACCATGTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR GCA 72 bp | ATGGTGACACCGAGCCAAAGTTACCTGGCTCAAGAATaGACAAACGCTGCGCAGCAGGGACACTGTCTTTCA | + |
|
Preference number: 3 (lower is better) Translates to: MVTPSQSYLAQE*TNAAQQGHCLS Trigger: TGAAAGACAGTGTCCCTGCTGCGCAGCGTTTGTGCATTCTTGAGCCAGGTAACTTTGGCTCGGTGTCACCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR-3UTR CAA 90 bp | TTGACTCTGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTGCTGGGTGGGAATGGAGGCTGTTTCCAATaGATCAAAGGAGGACTTTCC | + |
|
Preference number: 3 (lower is better) Translates to: LTLDQMLGCASAVVLGGNGGCFQ*IKGGLS Trigger: GGAAAGTCCTCCTTTGATCAATTGGAAACAGCCTCC...ATTCCCACCCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCAGAGTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR TCA 72 bp | GGCCTAGTACTCAAGAGGCAGAGGCAGATGAATCTCTaGGTTCAAGGCCAGCCTGGTCTACATAAACTTGGT | + |
|
Preference number: 3 (lower is better) Translates to: GLVLKRQRQMNL*VQGQPGLHKLG Trigger: ACCAAGTTTATGTAGACCAGGCTGGCCTTGAACTCAGAGATTCATCTGCCTCTGCCTCTTGAGTACTAGGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR TCA 72 bp | GGGGTAGGTGCCTCTGACTCATGCAAGTGTGATCTTTaGGAATGGAAAACCAGTCACCCTGGGTTACCCTTT | + |
|
Preference number: 3 (lower is better) Translates to: GVGASDSCKCDL*EWKTSHPGLPF Trigger: AAAGGGTAACCCAGGGTGACTGGTTTTCCATTCTCAAAGATCACACTTGCATGAGTCAGAGGCACCTACCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR CCA 72 bp | ACACACACCAGTATCATAAAGAAAACTTCAGGGAGCTaGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGC | + |
|
Preference number: 3 (lower is better) Translates to: THTSIIKKTSGS*RDGSVVKSTGC Trigger: GCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCTCCCTGAAGTTTTCTTTATGATACTGGTGTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR-3UTR CAA 90 bp | GATGGTGACACCGAGCCAAAGTTACCTGGCTCAAGAATGCACAAACGCTGCGCAGCCTCCATTTATCTTTaGTTTAAGGTAGCCTCAAGA | + |
|
Preference number: 3 (lower is better) Translates to: DGDTEPKLPGSRMHKRCAASIYL*FKVASR Trigger: TCTTGAGGCTACCTTAAACAAAAGATAAATGGAGGC...TGCGCAGCGTTTGTGCATTCTTGAGCCAGGTAACTTTGGCTCGGTGTCACCATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR TCA 72 bp | GTGAGGAATGGGAGCCAAGATTCAGACCCTGTGCTCTaGTCCAAGTGGTGTTTATTACTGAAATTAGGGCCT | + |
|
Preference number: 3 (lower is better) Translates to: VRNGSQDSDPVL*SKWCLLLKLGP Trigger: AGGCCCTAATTTCAGTAATAAACACCACTTGGATCAGAGCACAGGGTCTGAATCTTGGCTCCCATTCCTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR TCA 72 bp | ATTGATCAAAGGAGGACTTTCCCATTAGACCACTTGTaGGCCTCCATTTATCTTTTGTTTAAGGTAGCCTCA | + |
|
Preference number: 3 (lower is better) Translates to: IDQRRTFPLDHL*ASIYLLFKVAS Trigger: TGAGGCTACCTTAAACAAAAGATAAATGGAGGCTCACAAGTGGTCTAATGGGAAAGTCCTCCTTTGATCAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR GCA 90 bp | GGCCAGGAGCTTCCCTTCAGCTGGCAAGTTGAGCTTTCTGTCACGGTCGGAGGGCGGCCCCTCTCCAGCTaGCCCATGGCGCTGAACGTC | + |
|
Preference number: 4 (lower is better) Translates to: GQELPFSWQVELSVTVGGRPLSS*PMALNV Trigger: GACGTTCAGCGCCATGGGGCAGCTGGAGAGGGGCCG...CCCTCCGACCGTGACAGAAAGCTCAACTTGCCAGCTGAAGGGAAGCTCCTGGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CCA 90 bp | CCCGCCCAGGATGAGAAGGGGCGCCTGTGCTCCCATTTTCCCTTCTTAGCTGGCGGGGGCCTTCTGTCCTaGTGGGGACTTCTCCTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: PAQDEKGRLCSHFPFLAGGGLLS*WGLLLR Trigger: CCTCAGGAGAAGTCCCCACCAGGACAGAAGGCCCCC...GCCAGCTAAGAAGGGAAAATGGGAGCACAGGCGCCCCTTCTCATCCTGGGCGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| CDS-3UTR TCA 90 bp | GGCCAGGAGCTTCCCTTCAGCTGGCAAGTTGAGCTTTCTGTCACGGTCGGAGGGGCTGCCCCATGGCGCTaGACGTCAGGAAGGCAAACA | + |
|
Preference number: 4 (lower is better) Translates to: GQELPFSWQVELSVTVGGAAPWR*TSGRQT Trigger: TGTTTGCCTTCCTGACGTTCAGCGCCATGGGGCAGC...CCCTCCGACCGTGACAGAAAGCTCAACTTGCCAGCTGAAGGGAAGCTCCTGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CCA 90 bp | CCCGCCCAGGATGAGAAGGGGCGCCTGTGCTCCCATTTTCCCTTCTTAGCTGGCCTCAGCACCTCTTTCTaGGATGGGTCCAGGAGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: PAQDEKGRLCSHFPFLAGLSTSF*DGSRSP Trigger: GGGACTCCTGGACCCATCCCAGAAAGAGGTGCTGAG...GCCAGCTAAGAAGGGAAAATGGGAGCACAGGCGCCCCTTCTCATCCTGGGCGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| CDS-3UTR CCA 90 bp | GTGGTGCTGGGTGGGAATGCTCGTTGGCCAGGCTGGCTGGAGGCTCCCACAGAGAGAGCCAAGGGTGGGTaGTCACATATGTCCAGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: VVLGGNARWPGWLEAPTERAKGG*SHMSRL Trigger: CAACCTGGACATATGTGACCACCCACCCTTGGCTCT...CTCTGTGGGAGCCTCCAGCCAGCCTGGCCAACGAGCATTCCCACCCAGCACCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR GCA 90 bp | GCGCCTGTGCTCCCATTTTCCCTTCTTAGCTGGCCCCCAGAGAGACCCAGAGATAGACCAGCAGGCAACTaGGCTGGCTCAAGAGGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: APVLPFSLLSWPPERPRDRPAGN*AGSRGP Trigger: AGGGCCTCTTGAGCCAGCGCAGTTGCCTGCTGGTCT...ATCTCTGGGTCTCTCTGGGGGCCAGCTAAGAAGGGAAAATGGGAGCACAGGCGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CCA 90 bp | GGCCAGGAGCTTCCCTTCAGCTGGCAAGTTGAGCTTTCTGTCACGGTCGGAGGGGTCCCAGGAGCACCATaGGGGTGCATTTTCTCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: GQELPFSWQVELSVTVGGVPGAP*GCIFSC Trigger: GCAGGAGAAAATGCACCCCCATGGTGCTCCTGGGAC...CCCTCCGACCGTGACAGAAAGCTCAACTTGCCAGCTGAAGGGAAGCTCCTGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CCA 90 bp | CTCTGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTGCTGGGTGGGAATGCTCGGGGGCCTTCTGTCCTaGTGGGGACTTCTCCTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: LWTKCLAVLVLWCWVGMLGGLLS*WGLLLR Trigger: CCTCAGGAGAAGTCCCCACCAGGACAGAAGGCCCCC...GAGCATTCCCACCCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCAGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR GCA 90 bp | GTGGTGCTGGGTGGGAATGCTCGTTGGCCAGGCTGGCTGGAGGCTCCCACAGAGGATGCGGCAGTTTACTaGGAATCTCAGCACCTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: VVLGGNARWPGWLEAPTEDAAVY*ESQHLF Trigger: AAAGAGGTGCTGAGATTCGCAGTAAACTGCCGCATC...CTCTGTGGGAGCCTCCAGCCAGCCTGGCCAACGAGCATTCCCACCCAGCACCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CCA 90 bp | CTCCCATTTTCCCTTCTTAGCTGGCCCCCAGAGAGACCCAGAGATCCTACTGCAGGCTCACCAGCCCATTaGAGCGCACCCCAGCAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: LPFSLLSWPPERPRDPTAGSPAH*SAPQQQ Trigger: TTGCTGCTGGGGTGCGCTCCAATGGGCTGGTGAGCC...TGCAGTAGGATCTCTGGGTCTCTCTGGGGGCCAGCTAAGAAGGGAAAATGGGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR TCA 90 bp | CCATTTTCCCTTCTTAGCTGGCCCCCAGAGAGACCCAGAGATCCTACTGCACAGGGTGGGGACTTCTCCTaGGGAAGCTTCCCAGGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: PFSLLSWPPERPRDPTAQGGDFS*GSFPGS Trigger: AGAGCCTGGGAAGCTTCCTCAGGAGAAGTCCCCACC...CTGTGCAGTAGGATCTCTGGGTCTCTCTGGGGGCCAGCTAAGAAGGGAAAATGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| CDS-3UTR TCA 90 bp | GTTACTCTTAGTAACCACAGGGAGCCAGGAAGCAGGGCAGATGCTACAGTAGACAGACCTTCCACAAGCTaGTCCGCAGAGCCCGAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: VTLSNHREPGSRADATVDRPSTS*SAEPEG Trigger: CCCCTCGGGCTCTGCGGATCAGCTTGTGGAAGGTCT...GTCTACTGTAGCATCTGCCCTGCTTCCTGGCTCCCTGTGGTTACTAAGAGTAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR TCA 90 bp | GGACTAGGGAGATCTGAGACCCCTGCACTGAGCACTGAAGTTACTCCCCTACACGGCAAACAAAGCCTCTaGGTAGCCGGCTGCCAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: GLGRSETPALSTEVTPLHGKQSL*VAGCQE Trigger: TTCCTGGCAGCCGGCTACTCAGAGGCTTTGTTTGCC...GTGTAGGGGAGTAACTTCAGTGCTCAGTGCAGGGGTCTCAGATCTCCCTAGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR GCA 90 bp | GGCCAGGAGCTTCCCTTCAGCTGGCAAGTTGAGCTTTCTGTCACGGTCGGAGGGGCACTAGAGTCAGGATaGGGCAGTTTACTGCGAATC | + |
|
Preference number: 4 (lower is better) Translates to: GQELPFSWQVELSVTVGGALESG*GSLLRI Trigger: GATTCGCAGTAAACTGCCGCATCCTGACTCTAGTGC...CCCTCCGACCGTGACAGAAAGCTCAACTTGCCAGCTGAAGGGAAGCTCCTGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CCA 90 bp | CTCTGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTGCTGGGTGGGAATGCTCAGACAACCCAAGTCATaGAGTGCCACTGCAGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: LWTKCLAVLVLWCWVGMLRQPKS*SATAAS Trigger: GCTGGCTGCAGTGGCACTCCATGACTTGGGTTGTCT...GAGCATTCCCACCCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CCA 90 bp | GTTACTCTTAGTAACCACAGGGAGCCAGGAAGCAGGGCAGATGCTACAGTAGACCTCAGGAAGCCACGGTaGGGCTTCTCCGGGTTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: VTLSNHREPGSRADATVDLRKPR*GFSGFS Trigger: GGAGAACCCGGAGAAGCCCCACCGTGGCTTCCTGAG...GTCTACTGTAGCATCTGCCCTGCTTCCTGGCTCCCTGTGGTTACTAAGAGTAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CCA 90 bp | CTCTGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTGCTGGGTGGGAATGCTCAGCAGTGCTGCAGCGTaGACCAGGTACACAAACACC | + |
|
Preference number: 4 (lower is better) Translates to: LWTKCLAVLVLWCWVGMLSSAAA*TRYTNT Trigger: GGTGTTTGTGTACCTGGTCCACGCTGCAGCACTGCT...GAGCATTCCCACCCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CCA 90 bp | GGACTAGGGAGATCTGAGACCCCTGCACTGAGCACTGAAGTTACTCCCCTACACGGCCTTCTGTCCTGGTaGGGACTTCTCCTGAGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: GLGRSETPALSTEVTPLHGLLSW*GLLLRK Trigger: CTTCCTCAGGAGAAGTCCCCACCAGGACAGAAGGCC...GTGTAGGGGAGTAACTTCAGTGCTCAGTGCAGGGGTCTCAGATCTCCCTAGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| CDS-3UTR GCA 90 bp | GTTACTCTTAGTAACCACAGGGAGCCAGGAAGCAGGGCAGATGCTACAGTAGACCCTCTGCACTGGGAGTaGAGGAGGAAGCCAAGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: VTLSNHREPGSRADATVDPLHWE*RRKPRL Trigger: GAGCCTTGGCTTCCTCCTGCACTCCCAGTGCAGAGG...GTCTACTGTAGCATCTGCCCTGCTTCCTGGCTCCCTGTGGTTACTAAGAGTAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR GCA 90 bp | TTGACTCTGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTGCTGGGTGGGAATGGAGCACCATGGGGGTaGATTTTCTCCTGCAAGCCG | + |
|
Preference number: 4 (lower is better) Translates to: LTLDQMLGCASAVVLGGNGAPWG*IFSCKP Trigger: CGGCTTGCAGGAGAAAATGCACCCCCATGGTGCTCC...ATTCCCACCCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCAGAGTCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CCA 90 bp | GCTCAGTGGTTAAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCCTCAGCACCTCTTTCTaGGATGGGTCCAGGAGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: AQWLRALAALPEVLSSIPLSTSF*DGSRSP Trigger: GGGACTCCTGGACCCATCCCAGAAAGAGGTGCTGAG...GGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CCA 90 bp | CCATTTTCCCTTCTTAGCTGGCCCCCAGAGAGACCCAGAGATCCTACTGCACAGAGGCAGAGCCAAGGGTaGGTGGTCACATATGTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: PFSLLSWPPERPRDPTAQRQSQG*VVTYVQ Trigger: CTGGACATATGTGACCACCCACCCTTGGCTCTGCCT...CTGTGCAGTAGGATCTCTGGGTCTCTCTGGGGGCCAGCTAAGAAGGGAAAATGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CCA 90 bp | GATGGTGACACCGAGCCAAAGTTACCTGGCTCAAGAATGCACAAACGCTGCGCAGGCCTTCTGTCCTGGTaGGGACTTCTCCTGAGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: DGDTEPKLPGSRMHKRCAGLLSW*GLLLRK Trigger: CTTCCTCAGGAGAAGTCCCCACCAGGACAGAAGGCC...TGCGCAGCGTTTGTGCATTCTTGAGCCAGGTAACTTTGGCTCGGTGTCACCATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR CAA 72 bp | AGCTGGAGGGACACACTAGGGGAGAGGTGTTGTCTTTaGCCAAGAAGGGCACTTGGTGTCTTGGCAGAAGGC | + |
|
Preference number: 4 (lower is better) Translates to: SWRDTLGERCCL*PRRALGVLAEG Trigger: GCCTTCTGCCAAGACACCAAGTGCCCTTCTTGGCAAAAGACAACACCTCTCCCCTAGTGTGTCCCTCCAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR GCA 90 bp | TGTCTTTTGCCAAGAAGGGCACTTGGTGTCTTGGCAGAAGGCAGAGGGCTGCCCAGGGCAAAAGGCATCTaGGTGGTGATCTGGGATGAT | + |
|
Preference number: 4 (lower is better) Translates to: CLLPRRALGVLAEGRGLPRAKGI*VVIWDD Trigger: ATCATCCCAGATCACCACGCAGATGCCTTTTGCCCT...GGGCAGCCCTCTGCCTTCTGCCAAGACACCAAGTGCCCTTCTTGGCAAAAGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR GCA 90 bp | AGGGTTACTCTTAGTAACCACAGGGAGCCAGGAAGCAGGGCAGATGCTACAGTATGGCTCAAGAGGCCCTaGAAGGGTCTCAGCAGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: RVTLSNHREPGSRADATVWLKRP*KGLSSS Trigger: TGAGCTGCTGAGACCCTTGCAGGGCCTCTTGAGCCA...TACTGTAGCATCTGCCCTGCTTCCTGGCTCCCTGTGGTTACTAAGAGTAACCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR GCA 90 bp | CTCTGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTGCTGGGTGGGAATGCTCGAACCTGGACATGCATaGACAGACCTCCAAAGACCA | + |
|
Preference number: 4 (lower is better) Translates to: LWTKCLAVLVLWCWVGMLEPGHA*TDLQRP Trigger: TGGTCTTTGGAGGTCTGTGCATGCATGTCCAGGTTC...GAGCATTCCCACCCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR GCA 90 bp | CTCTGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTGCTGGGTGGGAATGCTCGTGAGAACCTGGACATaGATGCACAGACCTCCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: LWTKCLAVLVLWCWVGMLVRTWT*MHRPPK Trigger: CTTTGGAGGTCTGTGCATGCATGTCCAGGTTCTCAC...GAGCATTCCCACCCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR TCA 90 bp | CTCCCATTTTCCCTTCTTAGCTGGCCCCCAGAGAGACCCAGAGATCCTACTGCACGGAGAACAGCAAGTTaGGAAGTGCTACTGAGACCA | + |
|
Preference number: 4 (lower is better) Translates to: LPFSLLSWPPERPRDPTARRTAS*EVLLRP Trigger: TGGTCTCAGTAGCACTTCTCAACTTGCTGTTCTCCG...TGCAGTAGGATCTCTGGGTCTCTCTGGGGGCCAGCTAAGAAGGGAAAATGGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR TCA 90 bp | TTGACTCTGGACCAAATGCTTGGCTGTGCTAGTGCTGTGGTGCTGGGTGGGAATAAACGTTGGCAGGACTaGTGCAGAAGAGCAACGCTG | + |
|
Preference number: 4 (lower is better) Translates to: LTLDQMLGCASAVVLGGNKRWQD*CRRATL Trigger: CAGCGTTGCTCTTCTGCATCAGTCCTGCCAACGTTT...ATTCCCACCCAGCACCACAGCACTAGCACAGCCAAGCATTTGGTCCAGAGTCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR TCA 90 bp | CTGTGCTTTGATCAAACATTTAAATTTATCCACCAGGCCAGGCAGGGGTGGCTCGGTGGGGACTTCTCCTaGGGAAGCTTCCCAGGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: LCFDQTFKFIHQARQGWLGGDFS*GSFPGS Trigger: AGAGCCTGGGAAGCTTCCTCAGGAGAAGTCCCCACC...GAGCCACCCCTGCCTGGCCTGGTGGATAAATTTAAATGTTTGATCAAAGCACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR GCA 90 bp | CCTGTGCTCCCATTTTCCCTTCTTAGCTGGCCCCCAGAGAGACCCAGAGATCCTGATGCGGCAGTTTACTaGGAATCTCAGCACCTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: PVLPFSLLSWPPERPRDPDAAVY*ESQHLF Trigger: AAAGAGGTGCTGAGATTCGCAGTAAACTGCCGCATC...AGGATCTCTGGGTCTCTCTGGGGGCCAGCTAAGAAGGGAAAATGGGAGCACAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| CDS-3UTR GCA 90 bp | CCATTTTCCCTTCTTAGCTGGCCCCCAGAGAGACCCAGAGATCCTACTGCACAGGCACTAGAGTCAGGATaGGGCAGTTTACTGCGAATC | + |
|
Preference number: 4 (lower is better) Translates to: PFSLLSWPPERPRDPTAQALESG*GSLLRI Trigger: GATTCGCAGTAAACTGCCGCATCCTGACTCTAGTGC...CTGTGCAGTAGGATCTCTGGGTCTCTCTGGGGGCCAGCTAAGAAGGGAAAATGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| CDS-3UTR CCA 90 bp | GCTCAGTGGTTAAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCGGTTCTCCCTGTCCTTaGTTCTTTGCAGCCCAAGTG | + |
|
Preference number: 4 (lower is better) Translates to: AQWLRALAALPEVLSSIPGSPCP*FFAAQV Trigger: CACTTGGGCTGCAAAGAACCAAGGACAGGGAGAACC...GGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CCA 90 bp | GATGGTGACACCGAGCCAAAGTTACCTGGCTCAAGAATGCACAAACGCTGCGCAAACCGCGTGAGAACCTaGACATGCATGCACAGACCT | + |
|
Preference number: 4 (lower is better) Translates to: DGDTEPKLPGSRMHKRCANRVRT*TCMHRP Trigger: AGGTCTGTGCATGCATGTCCAGGTTCTCACGCGGTT...TGCGCAGCGTTTGTGCATTCTTGAGCCAGGTAACTTTGGCTCGGTGTCACCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CCA 90 bp | CCTGTGCTCCCATTTTCCCTTCTTAGCTGGCCCCCAGAGAGACCCAGAGATCCTGGCAGGAAGTTGCAATaGAGAATTAGTCCCAGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: PVLPFSLLSWPPERPRDPGRKLQ*RISPRS Trigger: GCTTCTGGGACTAATTCTCCATTGCAACTTCCTGCC...AGGATCTCTGGGTCTCTCTGGGGGCCAGCTAAGAAGGGAAAATGGGAGCACAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| CDS-3UTR TCA 90 bp | AGTTACACAGAGGGACCTTGTCTTAGCTCCCCTGACTACCCCTCCTCCAGAAAAAAGGCATCTGCGTGGTaGTCTGGGATGATGAGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: SYTEGPCLSSPDYPSSRKKASAW*SGMMRL Trigger: CAACCTCATCATCCCAGATCACCACGCAGATGCCTT...TTTTCTGGAGGAGGGGTAGTCAGGGGAGCTAAGACAAGGTCCCTCTGTGTAACT 52% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR TCA 90 bp | TGTCTTGGCAGAAGGCAGAGGGCTGCCCCAATCTGTGTGTACATTTTCAGTAGCGCTGACTATGAGCACTaGCAAGCACACAGAGGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: CLGRRQRAAPICVYIFSSADYEH*QAHRGH Trigger: ATGGCCTCTGTGTGCTTGTCAGTGCTCATAGTCAGC...GCTACTGAAAATGTACACACAGATTGGGGCAGCCCTCTGCCTTCTGCCAAGACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CCA 90 bp | GGACTAGGGAGATCTGAGACCCCTGCACTGAGCACTGAAGTTACTCCCCTACACGGCAGGAAGTTGCAATaGAGAATTAGTCCCAGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: GLGRSETPALSTEVTPLHGRKLQ*RISPRS Trigger: GCTTCTGGGACTAATTCTCCATTGCAACTTCCTGCC...GTGTAGGGGAGTAACTTCAGTGCTCAGTGCAGGGGTCTCAGATCTCCCTAGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| CDS-3UTR TCA 90 bp | CCATTTTCCCTTCTTAGCTGGCCCCCAGAGAGACCCAGAGATCCTACTGCACAGAATTGGGCACCTGTTTaGGCTCATAGTATCGCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: PFSLLSWPPERPRDPTAQNWAPV*AHSIAE Trigger: TTCTGCGATACTATGAGCTCAAACAGGTGCCCAATT...CTGTGCAGTAGGATCTCTGGGTCTCTCTGGGGGCCAGCTAAGAAGGGAAAATGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR GCA 90 bp | GAAGGTGGCTTTAGATCATACAGCTGGAAAGTGAGGAATGGGAGCCAAGATTCAACCCAAGTCATGGAGTaGCACTGCAGCCAGCACGGA | + |
|
Preference number: 4 (lower is better) Translates to: EGGFRSYSWKVRNGSQDSTQVME*HCSQHG Trigger: TCCGTGCTGGCTGCAGTGGCACTCCATGACTTGGGT...TGAATCTTGGCTCCCATTCCTCACTTTCCAGCTGTATGATCTAAAGCCACCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR GCA 90 bp | GTTACTCTTAGTAACCACAGGGAGCCAGGAAGCAGGGCAGATGCTACAGTAGACCTGTCCTTGGTTCTTTaGAGCCCAAGTGTAAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: VTLSNHREPGSRADATVDLSLVL*SPSVRQ Trigger: CTGCCTTACACTTGGGCTGCAAAGAACCAAGGACAG...GTCTACTGTAGCATCTGCCCTGCTTCCTGGCTCCCTGTGGTTACTAAGAGTAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| 3UTR CAA 72 bp | CACCATCCTGAGTGGGGCAGGCTGTTGGCCTGTGCTTaGATCAAACATTTAAATTTATCCACCAGGCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: HHPEWGRLLACA*IKHLNLSTRPG Trigger: GCCTGGCCTGGTGGATAAATTTAAATGTTTGATCAAAGCACAGGCCAACAGCCTGCCCCACTCAGGATGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR GCA 90 bp | GAAGGTGGCTTTAGATCATACAGCTGGAAAGTGAGGAATGGGAGCCAAGATTCATCCAAAGACCAGCAGTaGTGCAGCGTGGACCAGGTA | + |
|
Preference number: 4 (lower is better) Translates to: EGGFRSYSWKVRNGSQDSSKDQQ*CSVDQV Trigger: TACCTGGTCCACGCTGCAGCACTGCTGGTCTTTGGA...TGAATCTTGGCTCCCATTCCTCACTTTCCAGCTGTATGATCTAAAGCCACCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR GCA 90 bp | GTGGTGTTTATTACTGAAATTAGGGCCTCGTGTGCTTTACTACGGAGTTCTAGCAGGAACAAAAGCCTCTaGACTGGGAGTGCAGGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: VVFITEIRASCALLRSSSRNKSL*TGSAGG Trigger: TCCTCCTGCACTCCCAGTGCAGAGGCTTTTGTTCCT...GCTAGAACTCCGTAGTAAAGCACACGAGGCCCTAATTTCAGTAATAAACACCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CAA 90 bp | GTGGTGCTGGGTGGGAATGCTCGTTGGCCAGGCTGGCTGGAGGCTCCCACAGAGCCTGTCCTTGGTTCTTaGCAGCCCAAGTGTAAGGCA | + |
|
Preference number: 5 (lower is better) Translates to: VVLGGNARWPGWLEAPTEPVLGS*QPKCKA Trigger: TGCCTTACACTTGGGCTGCAAAGAACCAAGGACAGG...CTCTGTGGGAGCCTCCAGCCAGCCTGGCCAACGAGCATTCCCACCCAGCACCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CAA 90 bp | CCCGCCCAGGATGAGAAGGGGCGCCTGTGCTCCCATTTTCCCTTCTTAGCTGGCCCTCAGCAGCGGTTCTaGATCCTGAAGCAGGTGAGC | + |
|
Preference number: 5 (lower is better) Translates to: PAQDEKGRLCSHFPFLAGPQQRF*ILKQVS Trigger: GCTCACCTGCTTCAGGATCAAGAACCGCTGCTGAGG...GCCAGCTAAGAAGGGAAAATGGGAGCACAGGCGCCCCTTCTCATCCTGGGCGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| CDS GCA 90 bp | CTGATGCAGAAGAGCAACGCTGCACACAAGGCCTGCCGAGGACAGTaGAGAACCAGACAACCCAAGTCATGGAGTGCCACTGCAGCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: LMQKSNAAHKACRGQ*RTRQPKSWSATAAS Trigger: GCTGGCTGCAGTGGCACTCCATGACTTGGGTTGTCTGGTTCTGCACTGTCCTCGGCAGGCCTTGTGTGCAGCGTTGCTCTTCTGCATCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS TCA 90 bp | ACAAAGCCTCTGAGTAGCCGGCTGCCAGGAAAACGTTGGCAGGACTaGTGCAGAAGAGCAACGCTGCACACAAGGCCTGCCGAGGACAGT | + |
|
Preference number: 5 (lower is better) Translates to: TKPLSSRLPGKRWQD*CRRATLHTRPAEDS Trigger: ACTGTCCTCGGCAGGCCTTGTGTGCAGCGTTGCTCTTCTGCATCAGTCCTGCCAACGTTTTCCTGGCAGCCGGCTACTCAGAGGCTTTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS TCA 90 bp | CAGCTGCCCCATGGCGCTGAACGTCAGGAAGGCAAACAAAGCCTCTaGGTAGCCGGCTGCCAGGAAAACGTTGGCAGGACTGATGCAGAA | + |
|
Preference number: 5 (lower is better) Translates to: QLPHGAERQEGKQSL*VAGCQENVGRTDAE Trigger: TTCTGCATCAGTCCTGCCAACGTTTTCCTGGCAGCCGGCTACTCAGAGGCTTTGTTTGCCTTCCTGACGTTCAGCGCCATGGGGCAGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS TCA 90 bp | GGCACGATACTGAAAGAGGGCGAAGGGAAGGCTGACTATGAGCACTaGCAAGCACACAGAGGCCATCAGCTTCACGAGGGGCTTCCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: GTILKEGEGKADYEH*QAHRGHQLHEGLPG Trigger: CCCTGGAAGCCCCTCGTGAAGCTGATGGCCTCTGTGTGCTTGTCAGTGCTCATAGTCAGCCTTCCCTTCGCCCTCTTTCAGTATCGTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS GCA 90 bp | GGCCTGCCGAGGACAGTGCAGAACCAGACAACCCAAGTCATGGAGTaGCACTGCAGCCAGCACGGAGAACAGCAAGTTGAGAAGTGCTAC | + |
|
Preference number: 5 (lower is better) Translates to: GLPRTVQNQTTQVME*HCSQHGEQQVEKCY Trigger: GTAGCACTTCTCAACTTGCTGTTCTCCGTGCTGGCTGCAGTGGCACTCCATGACTTGGGTTGTCTGGTTCTGCACTGTCCTCGGCAGGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS GCA 90 bp | ACGTTGGCAGGACTGATGCAGAAGAGCAACGCTGCACACAAGGCCTaGCGAGGACAGTGCAGAACCAGACAACCCAAGTCATGGAGTGCC | + |
|
Preference number: 5 (lower is better) Translates to: TLAGLMQKSNAAHKA*RGQCRTRQPKSWSA Trigger: GGCACTCCATGACTTGGGTTGTCTGGTTCTGCACTGTCCTCGGCAGGCCTTGTGTGCAGCGTTGCTCTTCTGCATCAGTCCTGCCAACGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS GCA 90 bp | GGCTGCCAGGAAAACGTTGGCAGGACTGATGCAGAAGAGCAACGCTaGACACAAGGCCTGCCGAGGACAGTGCAGAACCAGACAACCCAA | + |
|
Preference number: 5 (lower is better) Translates to: GCQENVGRTDAEEQR*TQGLPRTVQNQTTQ Trigger: TTGGGTTGTCTGGTTCTGCACTGTCCTCGGCAGGCCTTGTGTGCAGCGTTGCTCTTCTGCATCAGTCCTGCCAACGTTTTCCTGGCAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS GCA 90 bp | AAGCCACGGTGGGGCTTCTCCGGGTTCTCCCTGTCCTTGGTTCTTTaGAGCCCAAGTGTAAGGCAGAGCCAAGGGTGGGTGGTCACATAT | + |
|
Preference number: 5 (lower is better) Translates to: KPRWGFSGFSLSLVL*SPSVRQSQGWVVTY Trigger: ATATGTGACCACCCACCCTTGGCTCTGCCTTACACTTGGGCTGCAAAGAACCAAGGACAGGGAGAACCCGGAGAAGCCCCACCGTGGCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS CCA 90 bp | AACAGCAAGTTGAGAAGTGCTACTGAGACCAGCAGGCAACTGCGCTaGCTCAAGAGGCCCTGCAAGGGTCTCAGCAGCTCAGTCCCCATC | + |
|
Preference number: 5 (lower is better) Translates to: NSKLRSATETSRQLR*LKRPCKGLSSSVPI Trigger: GATGGGGACTGAGCTGCTGAGACCCTTGCAGGGCCTCTTGAGCCAGCGCAGTTGCCTGCTGGTCTCAGTAGCACTTCTCAACTTGCTGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS TCA 90 bp | CCAAGTCATGGAGTGCCACTGCAGCCAGCACGGAGAACAGCAAGTTaGGAAGTGCTACTGAGACCAGCAGGCAACTGCGCTGGCTCAAGA | + |
|
Preference number: 5 (lower is better) Translates to: PSHGVPLQPARRTAS*EVLLRPAGNCAGSR Trigger: TCTTGAGCCAGCGCAGTTGCCTGCTGGTCTCAGTAGCACTTCTCAACTTGCTGTTCTCCGTGCTGGCTGCAGTGGCACTCCATGACTTGG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS CCA 90 bp | CACAAGGCCTGCCGAGGACAGTGCAGAACCAGACAACCCAAGTCATaGAGTGCCACTGCAGCCAGCACGGAGAACAGCAAGTTGAGAAGT | + |
|
Preference number: 5 (lower is better) Translates to: HKACRGQCRTRQPKS*SATAASTENSKLRS Trigger: ACTTCTCAACTTGCTGTTCTCCGTGCTGGCTGCAGTGGCACTCCATGACTTGGGTTGTCTGGTTCTGCACTGTCCTCGGCAGGCCTTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CAA 90 bp | CCTGTGCTCCCATTTTCCCTTCTTAGCTGGCCCCCAGAGAGACCCAGAGATCCTGCTGCCAGGAAAACGTaGGCAGGACTGATGCAGAAG | + |
|
Preference number: 5 (lower is better) Translates to: PVLPFSLLSWPPERPRDPAARKT*AGLMQK Trigger: CTTCTGCATCAGTCCTGCCAACGTTTTCCTGGCAGC...AGGATCTCTGGGTCTCTCTGGGGGCCAGCTAAGAAGGGAAAATGGGAGCACAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS GCA 90 bp | CGTGAGAACCTGGACATGCATGCACAGACCTCCAAAGACCAGCAGTaGTGCAGCGTGGACCAGGTACACAAACACCTTCGGACTCAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: RENLDMHAQTSKDQQ*CSVDQVHKHLRTQE Trigger: TTCCTGAGTCCGAAGGTGTTTGTGTACCTGGTCCACGCTGCAGCACTGCTGGTCTTTGGAGGTCTGTGCATGCATGTCCAGGTTCTCACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CAA 90 bp | GCGCCTGTGCTCCCATTTTCCCTTCTTAGCTGGCCCCCAGAGAGACCCAGAGATGTCCAAGGCAGGAAGTaGCAATGGAGAATTAGTCCC | + |
|
Preference number: 5 (lower is better) Translates to: APVLPFSLLSWPPERPRDVQGRK*QWRISP Trigger: GGGACTAATTCTCCATTGCAACTTCCTGCCTTGGAC...ATCTCTGGGTCTCTCTGGGGGCCAGCTAAGAAGGGAAAATGGGAGCACAGGCGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| CDS CCA 90 bp | GTCCACACACCTCAGCAGCGGTTCTTGATCCTGAAGCAGGTGAGCTaGAAACCAGTACATGATAGGAGTGGAAGAGGCCAAAAACCGCGT | + |
|
Preference number: 5 (lower is better) Translates to: VHTPQQRFLILKQVS*KPVHDRSGRGQKPR Trigger: ACGCGGTTTTTGGCCTCTTCCACTCCTATCATGTACTGGTTTCCAGCTCACCTGCTTCAGGATCAAGAACCGCTGCTGAGGTGTGTGGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| CDS-3UTR CAA 90 bp | GAAGGTGGCTTTAGATCATACAGCTGGAAAGTGAGGAATGGGAGCCAAGATTCACCTCAGCAGCGGTTCTaGATCCTGAAGCAGGTGAGC | + |
|
Preference number: 5 (lower is better) Translates to: EGGFRSYSWKVRNGSQDSPQQRF*ILKQVS Trigger: GCTCACCTGCTTCAGGATCAAGAACCGCTGCTGAGG...TGAATCTTGGCTCCCATTCCTCACTTTCCAGCTGTATGATCTAAAGCCACCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CAA 90 bp | TGTCTTGGCAGAAGGCAGAGGGCTGCCCCAATCTGTGTGTACATTTTCAGTAGCGTCCAAGGCAGGAAGTaGCAATGGAGAATTAGTCCC | + |
|
Preference number: 5 (lower is better) Translates to: CLGRRQRAAPICVYIFSSVQGRK*QWRISP Trigger: GGGACTAATTCTCCATTGCAACTTCCTGCCTTGGAC...GCTACTGAAAATGTACACACAGATTGGGGCAGCCCTCTGCCTTCTGCCAAGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS-3UTR CAA 90 bp | CTGTGCTTTGATCAAACATTTAAATTTATCCACCAGGCCAGGCAGGGGTGGCTCTCACATATGTCCAGGTaGCCCACACAACCAGTACTG | + |
|
Preference number: 5 (lower is better) Translates to: LCFDQTFKFIHQARQGWLSHMSR*PTQPVL Trigger: CAGTACTGGTTGTGTGGGCAACCTGGACATATGTGA...GAGCCACCCCTGCCTGGCCTGGTGGATAAATTTAAATGTTTGATCAAAGCACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS CCA 90 bp | CAGAAGCCAGTAGGTCAGGAAGTAGACCAGAACGCATCTTGTGACTaGAGAGCATCTCTTCCAATCGTAGAAGAGTTTCATGAGACAGTT | + |
|
Preference number: 5 (lower is better) Translates to: QKPVGQEVDQNASCD*RASLPIVEEFHETV Trigger: AACTGTCTCATGAAACTCTTCTACGATTGGAAGAGATGCTCTCCAGTCACAAGATGCGTTCTGGTCTACTTCCTGACCTACTGGCTTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| CDS TCA 72 bp | CTGAGTAGCCGGCTGCCAGGAAAACGTTGGCAGGACTaGTGCAGAAGAGCAACGCTGCACACAAGGCCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: LSSRLPGKRWQD*CRRATLHTRPA Trigger: GGCAGGCCTTGTGTGCAGCGTTGCTCTTCTGCATCAGTCCTGCCAACGTTTTCCTGGCAGCCGGCTACTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS CAA 72 bp | GTGGGGCTTCTCCGGGTTCTCCCTGTCCTTGGTTCTTaGCAGCCCAAGTGTAAGGCAGAGCCAAGGGTGGGT | + |
|
Preference number: 6 (lower is better) Translates to: VGLLRVLPVLGS*QPKCKAEPRVG Trigger: ACCCACCCTTGGCTCTGCCTTACACTTGGGCTGCAAAGAACCAAGGACAGGGAGAACCCGGAGAAGCCCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS CAA 90 bp | GAAGCCACGGTGGGGCTTCTCCGGGTTCTCCCTGTCCTTGGTTCTTaGCAGCCCAAGTGTAAGGCAGAGCCAAGGGTGGGTGGTCACATA | + |
|
Preference number: 6 (lower is better) Translates to: EATVGLLRVLPVLGS*QPKCKAEPRVGGHI Trigger: TATGTGACCACCCACCCTTGGCTCTGCCTTACACTTGGGCTGCAAAGAACCAAGGACAGGGAGAACCCGGAGAAGCCCCACCGTGGCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS CAA 90 bp | CCCAAGTCATGGAGTGCCACTGCAGCCAGCACGGAGAACAGCAAGTaGAGAAGTGCTACTGAGACCAGCAGGCAACTGCGCTGGCTCAAG | + |
|
Preference number: 6 (lower is better) Translates to: PKSWSATAASTENSK*RSATETSRQLRWLK Trigger: CTTGAGCCAGCGCAGTTGCCTGCTGGTCTCAGTAGCACTTCTCAACTTGCTGTTCTCCGTGCTGGCTGCAGTGGCACTCCATGACTTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS TCA 72 bp | GGAGTGCCACTGCAGCCAGCACGGAGAACAGCAAGTTaGGAAGTGCTACTGAGACCAGCAGGCAACTGCGCT | + |
|
Preference number: 6 (lower is better) Translates to: GVPLQPARRTAS*EVLLRPAGNCA Trigger: AGCGCAGTTGCCTGCTGGTCTCAGTAGCACTTCTCAACTTGCTGTTCTCCGTGCTGGCTGCAGTGGCACTCC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS CCA 72 bp | TGCCGAGGACAGTGCAGAACCAGACAACCCAAGTCATaGAGTGCCACTGCAGCCAGCACGGAGAACAGCAAG | + |
|
Preference number: 6 (lower is better) Translates to: CRGQCRTRQPKS*SATAASTENSK Trigger: CTTGCTGTTCTCCGTGCTGGCTGCAGTGGCACTCCATGACTTGGGTTGTCTGGTTCTGCACTGTCCTCGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS TCA 72 bp | CATGGCGCTGAACGTCAGGAAGGCAAACAAAGCCTCTaGGTAGCCGGCTGCCAGGAAAACGTTGGCAGGACT | + |
|
Preference number: 6 (lower is better) Translates to: HGAERQEGKQSL*VAGCQENVGRT Trigger: AGTCCTGCCAACGTTTTCCTGGCAGCCGGCTACTCAGAGGCTTTGTTTGCCTTCCTGACGTTCAGCGCCATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS TCA 72 bp | CTGAAAGAGGGCGAAGGGAAGGCTGACTATGAGCACTaGCAAGCACACAGAGGCCATCAGCTTCACGAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: LKEGEGKADYEH*QAHRGHQLHEG Trigger: CCCCTCGTGAAGCTGATGGCCTCTGTGTGCTTGTCAGTGCTCATAGTCAGCCTTCCCTTCGCCCTCTTTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS GCA 72 bp | AAGAGCAACGCTGCACACAAGGCCTGCCGAGGACAGTaGAGAACCAGACAACCCAAGTCATGGAGTGCCACT | + |
|
Preference number: 6 (lower is better) Translates to: KSNAAHKACRGQ*RTRQPKSWSAT Trigger: AGTGGCACTCCATGACTTGGGTTGTCTGGTTCTGCACTGTCCTCGGCAGGCCTTGTGTGCAGCGTTGCTCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS GCA 72 bp | GAAAACGTTGGCAGGACTGATGCAGAAGAGCAACGCTaGACACAAGGCCTGCCGAGGACAGTGCAGAACCAG | + |
|
Preference number: 6 (lower is better) Translates to: ENVGRTDAEEQR*TQGLPRTVQNQ Trigger: CTGGTTCTGCACTGTCCTCGGCAGGCCTTGTGTGCAGCGTTGCTCTTCTGCATCAGTCCTGCCAACGTTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS CCA 72 bp | GAGTTTCATGAGACAGTTTCTGGGGGCCTTCTGTCCTaGTGGGGACTTCTCCTGAGGAAGCTTCCCAGGCTC | + |
|
Preference number: 6 (lower is better) Translates to: EFHETVSGGLLS*WGLLLRKLPRL Trigger: GAGCCTGGGAAGCTTCCTCAGGAGAAGTCCCCACCAGGACAGAAGGCCCCCAGAAACTGTCTCATGAAACTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| CDS GCA 72 bp | GTGCAGAACCAGACAACCCAAGTCATGGAGTGCCACTaGAGCCAGCACGGAGAACAGCAAGTTGAGAAGTGC | + |
|
Preference number: 6 (lower is better) Translates to: VQNQTTQVMECH*SQHGEQQVEKC Trigger: GCACTTCTCAACTTGCTGTTCTCCGTGCTGGCTGCAGTGGCACTCCATGACTTGGGTTGTCTGGTTCTGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS GCA 72 bp | AGGACAGTGCAGAACCAGACAACCCAAGTCATGGAGTaGCACTGCAGCCAGCACGGAGAACAGCAAGTTGAG | + |
|
Preference number: 6 (lower is better) Translates to: RTVQNQTTQVME*HCSQHGEQQVE Trigger: CTCAACTTGCTGTTCTCCGTGCTGGCTGCAGTGGCACTCCATGACTTGGGTTGTCTGGTTCTGCACTGTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS GCA 72 bp | GTGGAAGAGGCCAAAAACCGCGTGAGAACCTGGACATaGATGCACAGACCTCCAAAGACCAGCAGTGCTGCA | + |
|
Preference number: 6 (lower is better) Translates to: VEEAKNRVRTWT*MHRPPKTSSAA Trigger: TGCAGCACTGCTGGTCTTTGGAGGTCTGTGCATGCATGTCCAGGTTCTCACGCGGTTTTTGGCCTCTTCCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062118.11 |
||
| CDS CCA 72 bp | CCTCAGCAGCGGTTCTTGATCCTGAAGCAGGTGAGCTaGAAACCAGTACATGATAGGAGTGGAAGAGGCCAA | + |
|
Preference number: 6 (lower is better) Translates to: PQQRFLILKQVS*KPVHDRSGRGQ Trigger: TTGGCCTCTTCCACTCCTATCATGTACTGGTTTCCAGCTCACCTGCTTCAGGATCAAGAACCGCTGCTGAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| CDS TCA 72 bp | GCCAGTAGGTCAGGAAGTAGACCAGAACGCATCTTGTaGCTGGAGAGCATCTCTTCCAATCGTAGAAGAGTT | + |
|
Preference number: 6 (lower is better) Translates to: ASRSGSRPERIL*LESISSNRRRV Trigger: AACTCTTCTACGATTGGAAGAGATGCTCTCCAGTCACAAGATGCGTTCTGGTCTACTTCCTGACCTACTGGC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||
| CDS CCA 72 bp | GTAGGTCAGGAAGTAGACCAGAACGCATCTTGTGACTaGAGAGCATCTCTTCCAATCGTAGAAGAGTTTCAT | + |
|
Preference number: 6 (lower is better) Translates to: VGQEVDQNASCD*RASLPIVEEFH Trigger: ATGAAACTCTTCTACGATTGGAAGAGATGCTCTCCAGTCACAAGATGCGTTCTGGTCTACTTCCTGACCTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062118.11 ENSMUST00000067902.13 |
||