Pregenerated sensors for PIGS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041958Ensembl transcript IDs: ENSMUST00000048073.9
Found 112 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGAGTGAAGACATGTCATCACCAGCAGACCTTGCCTTGGTCTCTTaGCCCAACACCCTCCCAGCGTGGCTAGAGAGGAGGGCTCCCTCT | + |
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Preference number: 1 (lower is better) Translates to: ESEDMSSPADLALVS*PNTLPAWLERRAPS Trigger: AGAGGGAGCCCTCCTCTCTAGCCACGCTGGGAGGGTGTTGGGCCAAGAGACCAAGGCAAGGTCTGCTGGTGATGACATGTCTTCACTCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR CCA 90 bp | GTAGAAGATCCTAAGCCACTGCCTCCTAGACCAGGCTGTCCCCAGTaGGTGACGCCAGTCAAGAAGCTGAGGAAGGAGGGAGGTGGTCTC | + |
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Preference number: 1 (lower is better) Translates to: VEDPKPLPPRPGCPQ*VTPVKKLRKEGGGL Trigger: GAGACCACCTCCCTCCTTCCTCAGCTTCTTGACTGGCGTCACCCACTGGGGACAGCCTGGTCTAGGAGGCAGTGGCTTAGGATCTTCTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR-3UTR CCA 90 bp | GGAGGGGAAGGGAGCCCATCGTGGAGTGCCATCCGTAGAGAGCCCACGGGCGAGAACACCCTCCCAGCGTaGCTAGAGAGGAGGGCTCCC | + |
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Preference number: 2 (lower is better) Translates to: GGEGSPSWSAIRREPTGENTLPA*LERRAP Trigger: GGGAGCCCTCCTCTCTAGCCACGCTGGGAGGGTGTT...CTCGCCCGTGGGCTCTCTACGGATGGCACTCCACGATGGGCTCCCTTCCCCTCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR-3UTR CCA 90 bp | ATTCAGGCCTGTTGGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCACACTACCCTTGCCTTGGTCTCTTaGCCCAACACCCTCCCAGCG | + |
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Preference number: 2 (lower is better) Translates to: IQACWVPSQKCFLLFHTTLALVS*PNTLPA Trigger: CGCTGGGAGGGTGTTGGGCCAAGAGACCAAGGCAAG...GGTAGTGTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAGGCCTGAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR-3UTR CCA 90 bp | TTCAGGCCTGTTGGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCACACTACCTGGAGGAGCAAGCCAGTaGACTAGGAGGGGAAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: FRPVGFQVRNVFSCSTLPGGASQ*TRRGRE Trigger: CTCCCTTCCCCTCCTAGTCCACTGGCTTGCTCCTCC...AGGTAGTGTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAGGCCTGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR-3UTR CCA 90 bp | CCTGTTCCACACTACCTCTCTGAAAGGGTAGAGGGGAACCTTAGCCACAAGGTAAGGTGGTCTCAGAAGTaGAGAGGACAGGGCTACAAT | + |
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Preference number: 2 (lower is better) Translates to: PVPHYLSERVEGNLSHKVRWSQK*RGQGYN Trigger: ATTGTAGCCCTGTCCTCTCCACTTCTGAGACCACCT...TACCTTGTGGCTAAGGTTCCCCTCTACCCTTTCAGAGAGGTAGTGTGGAACAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR-3UTR GCA 90 bp | ATTCAGGCCTGTTGGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCACACTACCGCTGTGCTGACAGGCTaGAAGGACAAAGTACCCCTG | + |
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Preference number: 2 (lower is better) Translates to: IQACWVPSQKCFLLFHTTAVLTG*KDKVPL Trigger: CAGGGGTACTTTGTCCTTGCAGCCTGTCAGCACAGC...GGTAGTGTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAGGCCTGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR-3UTR GCA 90 bp | ATTCAGGCCTGTTGGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCACACTACCATCACCAGCAGACCTTaGCTTGGTCTCTTGGCCCAA | + |
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Preference number: 2 (lower is better) Translates to: IQACWVPSQKCFLLFHTTITSRP*LGLLAQ Trigger: TTGGGCCAAGAGACCAAGGCAAGGTCTGCTGGTGAT...GGTAGTGTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAGGCCTGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR CCA 72 bp | CAAGCCAGTGGACTAGGAGGGGAAGGGAGCCCATCGTaGAGTGCCATCCGTAGAGAGCCCACGGGCGAGAGT | + |
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Preference number: 3 (lower is better) Translates to: QASGLGGEGSPS*SAIRREPTGES Trigger: ACTCTCGCCCGTGGGCTCTCTACGGATGGCACTCCACGATGGGCTCCCTTCCCCTCCTAGTCCACTGGCTTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR-3UTR CAA 90 bp | AGGCATGGAGGAGCAAGCCAGTGGACTAGGAGGGGAAGGGAGCCCATCGTGGAGCCTTGCCTTGGTCTCTaGGCCCAACACCCTCCCAGC | + |
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Preference number: 3 (lower is better) Translates to: RHGGASQWTRRGREPIVEPCLGL*AQHPPS Trigger: GCTGGGAGGGTGTTGGGCCAAGAGACCAAGGCAAGG...CTCCACGATGGGCTCCCTTCCCCTCCTAGTCCACTGGCTTGCTCCTCCATGCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR CCA 72 bp | CCTTCTGAGGCTTGTAGGCATGGAGGAGCAAGCCAGTaGACTAGGAGGGGAAGGGAGCCCATCGTGGAGTGC | + |
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Preference number: 3 (lower is better) Translates to: PSEACRHGGASQ*TRRGREPIVEC Trigger: GCACTCCACGATGGGCTCCCTTCCCCTCCTAGTCCACTGGCTTGCTCCTCCATGCCTACAAGCCTCAGAAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR CCA 72 bp | CCTAAGCCACTGCCTCCTAGACCAGGCTGTCCCCAGTaGGTGACGCCAGTCAAGAAGCTGAGGAAGGAGGGA | + |
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Preference number: 3 (lower is better) Translates to: PKPLPPRPGCPQ*VTPVKKLRKEG Trigger: TCCCTCCTTCCTCAGCTTCTTGACTGGCGTCACCCACTGGGGACAGCCTGGTCTAGGAGGCAGTGGCTTAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR GCA 72 bp | CACCTCTCAGTGCGTTTGTATGCTGTGCTGACAGGCTaGAAGGACAAAGTACCCCTGTCCAGAGGTAGGCAC | + |
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Preference number: 3 (lower is better) Translates to: HLSVRLYAVLTG*KDKVPLSRGRH Trigger: GTGCCTACCTCTGGACAGGGGTACTTTGTCCTTGCAGCCTGTCAGCACAGCATACAAACGCACTGAGAGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR CCA 72 bp | TTTCTGAGGGTGACATCATCAGTGCTTTCCCACCAATaGAAACCTGAGGCTCAGGTGAGGAGCGAGGAGCGG | + |
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Preference number: 3 (lower is better) Translates to: FLRVTSSVLSHQ*KPEAQVRSEER Trigger: CCGCTCCTCGCTCCTCACCTGAGCCTCAGGTTTCCATTGGTGGGAAAGCACTGATGATGTCACCCTCAGAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR-3UTR CAA 90 bp | ATTCAGGCCTGTTGGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCACACTACCCCAGCAGACCTTGCCTaGGTCTCTTGGCCCAACACC | + |
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Preference number: 3 (lower is better) Translates to: IQACWVPSQKCFLLFHTTPADLA*VSWPNT Trigger: GGTGTTGGGCCAAGAGACCAAGGCAAGGTCTGCTGG...GGTAGTGTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAGGCCTGAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR GCA 72 bp | AGTACTCCCCTAAATTCACCTCTCAGTGCGTTTGTATaGTGTGCTGACAGGCTGCAAGGACAAAGTACCCCT | + |
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Preference number: 3 (lower is better) Translates to: STPLNSPLSAFV*CADRLQGQSTP Trigger: AGGGGTACTTTGTCCTTGCAGCCTGTCAGCACAGCATACAAACGCACTGAGAGGTGAATTTAGGGGAGTACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR CCA 72 bp | GTTAAGTGCAGAAGCCGGAGTCTGATTCAGGCCTGTTaGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCAC | + |
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Preference number: 3 (lower is better) Translates to: VKCRSRSLIQAC*VPSQKCFLLFH Trigger: GTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAGGCCTGAATCAGACTCCGGCTTCTGCACTTAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR TCA 90 bp | GGAGCAAGCCAGTGGACTAGGAGGGGAAGGGAGCCCATCGTGGAGTGCCATCCGCAAGGAGTAGCTGGATaGGGCTGGGTCAAAGCGGGG | + |
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Preference number: 4 (lower is better) Translates to: GASQWTRRGREPIVECHPQGVAG*GWVKAG Trigger: CCCCGCTTTGACCCAGCCTCATCCAGCTACTCCTTG...CGGATGGCACTCCACGATGGGCTCCCTTCCCCTCCTAGTCCACTGGCTTGCTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR TCA 90 bp | CCTAGACCAGGCTGTCCCCAGTGGGTGACGCCAGTCAAGAAGCTGAGGAAGGAGGGAGGCACCTGGGGCTaGGCAATTCCAAAGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: PRPGCPQWVTPVKKLRKEGGTWG*AIPKSS Trigger: GCTGCTCTTTGGAATTGCTCAGCCCCAGGTGCCTCC...CTCCTTCCTCAGCTTCTTGACTGGCGTCACCCACTGGGGACAGCCTGGTCTAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR TCA 90 bp | GGAGCAAGCCAGTGGACTAGGAGGGGAAGGGAGCCCATCGTGGAGTGCCATCCGCCAGCTCCCAGGTCATaGGTCCTTCACTCTTTGGTC | + |
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Preference number: 4 (lower is better) Translates to: GASQWTRRGREPIVECHPPAPRS*VLHSLV Trigger: GACCAAAGAGTGAAGGACTCATGACCTGGGAGCTGG...CGGATGGCACTCCACGATGGGCTCCCTTCCCCTCCTAGTCCACTGGCTTGCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CCA 90 bp | GGAGCAAGCCAGTGGACTAGGAGGGGAAGGGAGCCCATCGTGGAGTGCCATCCGTTGAAGGCTTCCCTGTaGATCAGCCCCCGGACAACT | + |
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Preference number: 4 (lower is better) Translates to: GASQWTRRGREPIVECHPLKASL*ISPRTT Trigger: AGTTGTCCGGGGGCTGATCCACAGGGAAGCCTTCAA...CGGATGGCACTCCACGATGGGCTCCCTTCCCCTCCTAGTCCACTGGCTTGCTCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CCA 90 bp | AGGCATGGAGGAGCAAGCCAGTGGACTAGGAGGGGAAGGGAGCCCATCGTGGAGGTCAAGGACATGGCCTaGGCGACCTGGACTATGCGA | + |
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Preference number: 4 (lower is better) Translates to: RHGGASQWTRRGREPIVEVKDMA*ATWTMR Trigger: TCGCATAGTCCAGGTCGCCCAGGCCATGTCCTTGAC...CTCCACGATGGGCTCCCTTCCCCTCCTAGTCCACTGGCTTGCTCCTCCATGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CCA 90 bp | CTGCCTCCTAGACCAGGCTGTCCCCAGTGGGTGACGCCAGTCAAGAAGCTGAGGTCCCAGTGGACATCGTaGGACTTGGGGTCTGGGTTG | + |
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Preference number: 4 (lower is better) Translates to: LPPRPGCPQWVTPVKKLRSQWTS*DLGSGL Trigger: CAACCCAGACCCCAAGTCCCACGATGTCCACTGGGA...CCTCAGCTTCTTGACTGGCGTCACCCACTGGGGACAGCCTGGTCTAGGAGGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CCA 90 bp | CTGCCTCCTAGACCAGGCTGTCCCCAGTGGGTGACGCCAGTCAAGAAGCTGAGGGGCTGCACAAAGCGCTaGACAGCTCCCTCAATGTCC | + |
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Preference number: 4 (lower is better) Translates to: LPPRPGCPQWVTPVKKLRGCTKR*TAPSMS Trigger: GGACATTGAGGGAGCTGTCCAGCGCTTTGTGCAGCC...CCTCAGCTTCTTGACTGGCGTCACCCACTGGGGACAGCCTGGTCTAGGAGGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR GCA 90 bp | CTGCCTCCTAGACCAGGCTGTCCCCAGTGGGTGACGCCAGTCAAGAAGCTGAGGAAGGAGCCCTCAGCTTaGTTCTCCGGCTCAGCTAAC | + |
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Preference number: 4 (lower is better) Translates to: LPPRPGCPQWVTPVKKLRKEPSA*FSGSAN Trigger: GTTAGCTGAGCCGGAGAAGCAAGCTGAGGGCTCCTT...CCTCAGCTTCTTGACTGGCGTCACCCACTGGGGACAGCCTGGTCTAGGAGGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CCA 90 bp | CCTAGACCAGGCTGTCCCCAGTGGGTGACGCCAGTCAAGAAGCTGAGGAAGGAGACTGGGTTGATGACGTaGGGCAGGCTGTGCATAGCC | + |
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Preference number: 4 (lower is better) Translates to: PRPGCPQWVTPVKKLRKETGLMT*GRLCIA Trigger: GGCTATGCACAGCCTGCCCCACGTCATCAACCCAGT...CTCCTTCCTCAGCTTCTTGACTGGCGTCACCCACTGGGGACAGCCTGGTCTAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CCA 90 bp | CTAGGAGGGGAAGGGAGCCCATCGTGGAGTGCCATCCGTAGAGAGCCCACGGGCGGGAAATACAAGAGGTaGAGGAGGGAGGGGTCAAAA | + |
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Preference number: 4 (lower is better) Translates to: LGGEGSPSWSAIRREPTGGKYKR*RREGSK Trigger: TTTTGACCCCTCCCTCCTCCACCTCTTGTATTTCCC...GCCCGTGGGCTCTCTACGGATGGCACTCCACGATGGGCTCCCTTCCCCTCCTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR CAA 72 bp | CGGGCGAGAGTGAAGACATGTCATCACCAGCAGACCTaGCCTTGGTCTCTTGGCCCAACACCCTCCCAGCGT | + |
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Preference number: 4 (lower is better) Translates to: RARVKTCHHQQT*PWSLGPTPSQR Trigger: ACGCTGGGAGGGTGTTGGGCCAAGAGACCAAGGCAAGGTCTGCTGGTGATGACATGTCTTCACTCTCGCCCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR TCA 90 bp | AGGCATGGAGGAGCAAGCCAGTGGACTAGGAGGGGAAGGGAGCCCATCGTGGAGTTCACTCTTTGGTCCTaGGAGCAGGCATTTGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: RHGGASQWTRRGREPIVEFTLWS*EQAFGR Trigger: CCTCCCAAATGCCTGCTCTCAGGACCAAAGAGTGAA...CTCCACGATGGGCTCCCTTCCCCTCCTAGTCCACTGGCTTGCTCCTCCATGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR GCA 90 bp | CTGCCTCCTAGACCAGGCTGTCCCCAGTGGGTGACGCCAGTCAAGAAGCTGAGGCGATTCAGGAAAGGCTaGACAAAGCGCTGGACAGCT | + |
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Preference number: 4 (lower is better) Translates to: LPPRPGCPQWVTPVKKLRRFRKG*TKRWTA Trigger: AGCTGTCCAGCGCTTTGTGCAGCCTTTCCTGAATCG...CCTCAGCTTCTTGACTGGCGTCACCCACTGGGGACAGCCTGGTCTAGGAGGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR TCA 90 bp | CTGCCTCCTAGACCAGGCTGTCCCCAGTGGGTGACGCCAGTCAAGAAGCTGAGGGCTCATGCACAACGGTaGAAGGTAGCTTCTCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: LPPRPGCPQWVTPVKKLRAHAQR*KVASLG Trigger: ACCAAGAGAAGCTACCTTTCACCGTTGTGCATGAGC...CCTCAGCTTCTTGACTGGCGTCACCCACTGGGGACAGCCTGGTCTAGGAGGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR GCA 90 bp | CTAGGAGGGGAAGGGAGCCCATCGTGGAGTGCCATCCGTAGAGAGCCCACGGGCGCTTTTTCCAGGACTTaGGAGTTTCCTGAAAGATCT | + |
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Preference number: 4 (lower is better) Translates to: LGGEGSPSWSAIRREPTGAFSRT*EFPERS Trigger: AGATCTTTCAGGAAACTCGCAAGTCCTGGAAAAAGC...GCCCGTGGGCTCTCTACGGATGGCACTCCACGATGGGCTCCCTTCCCCTCCTAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CCA 90 bp | ATTCAGGCCTGTTGGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCACACTACCCCACCTCTAGGTCCGTaGCCGCAGCTCCTGCGGCCG | + |
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Preference number: 4 (lower is better) Translates to: IQACWVPSQKCFLLFHTTPPLGP*PQLLRP Trigger: CGGCCGCAGGAGCTGCGGCCACGGACCTAGAGGTGG...GGTAGTGTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAGGCCTGAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CCA 90 bp | CCTGTTCCACACTACCTCTCTGAAAGGGTAGAGGGGAACCTTAGCCACAAGGTAATGGCCTGGGCGACCTaGACTATGCGACGGCCGATG | + |
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Preference number: 4 (lower is better) Translates to: PVPHYLSERVEGNLSHKVMAWAT*TMRRPM Trigger: CATCGGCCGTCGCATAGTCCAGGTCGCCCAGGCCAT...TACCTTGTGGCTAAGGTTCCCCTCTACCCTTTCAGAGAGGTAGTGTGGAACAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CCA 90 bp | CCTGTTCCACACTACCTCTCTGAAAGGGTAGAGGGGAACCTTAGCCACAAGGTACCCCAGCGGGGACTGTaGAAGGCATTGGTGGCCACT | + |
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Preference number: 4 (lower is better) Translates to: PVPHYLSERVEGNLSHKVPQRGL*KALVAT Trigger: AGTGGCCACCAATGCCTTCCACAGTCCCCGCTGGGG...TACCTTGTGGCTAAGGTTCCCCTCTACCCTTTCAGAGAGGTAGTGTGGAACAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| 3UTR CAA 72 bp | GAGAGTGAAGACATGTCATCACCAGCAGACCTTGCCTaGGTCTCTTGGCCCAACACCCTCCCAGCGTGGCTA | + |
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Preference number: 4 (lower is better) Translates to: ESEDMSSPADLA*VSWPNTLPAWL Trigger: TAGCCACGCTGGGAGGGTGTTGGGCCAAGAGACCAAGGCAAGGTCTGCTGGTGATGACATGTCTTCACTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR TCA 90 bp | TACCCCTGTCCAGAGGTAGGCACACAAAGGCTTTCAAGTTCGAGCCAGATATGGAGCCTAAGCTGGACTTaGGCGGCCGCCTCTTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: YPCPEVGTQRLSSSSQIWSLSWT*AAASCQ Trigger: CTGACAAGAGGCGGCCGCTCAAGTCCAGCTTAGGCT...CCATATCTGGCTCGAACTTGAAAGCCTTTGTGTGCCTACCTCTGGACAGGGGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CCA 90 bp | TACCCCTGTCCAGAGGTAGGCACACAAAGGCTTTCAAGTTCGAGCCAGATATGGCTGAGAGCAGGCATTTaGGAGGCACCTGGGGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: YPCPEVGTQRLSSSSQIWLRAGI*EAPGAE Trigger: CTCAGCCCCAGGTGCCTCCCAAATGCCTGCTCTCAG...CCATATCTGGCTCGAACTTGAAAGCCTTTGTGTGCCTACCTCTGGACAGGGGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR GCA 90 bp | AGGAGGGAGGTGGTCTCAGAAGTGGAGAGGACAGGGCTACAATTCAACTCAAGTAAGGCGGACGACAGGTaGCCAAGGGCTAAGGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: RREVVSEVERTGLQFNSSKADDR*PRAKAF Trigger: AAAGGCCTTAGCCCTTGGGCACCTGTCGTCCGCCTT...ACTTGAGTTGAATTGTAGCCCTGTCCTCTCCACTTCTGAGACCACCTCCCTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CCA 90 bp | CCTGTTCCACACTACCTCTCTGAAAGGGTAGAGGGGAACCTTAGCCACAAGGTACCCTCAATGTCCCAGTaGACATCGTGGGACTTGGGG | + |
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Preference number: 4 (lower is better) Translates to: PVPHYLSERVEGNLSHKVPSMSQ*TSWDLG Trigger: CCCCAAGTCCCACGATGTCCACTGGGACATTGAGGG...TACCTTGTGGCTAAGGTTCCCCTCTACCCTTTCAGAGAGGTAGTGTGGAACAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CCA 90 bp | AGGAGGGAGGTGGTCTCAGAAGTGGAGAGGACAGGGCTACAATTCAACTCAAGTTGTGGAAGGCATTGGTaGCCACTGGAGCTCCGTCCT | + |
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Preference number: 4 (lower is better) Translates to: RREVVSEVERTGLQFNSSCGRHW*PLELRP Trigger: AGGACGGAGCTCCAGTGGCCACCAATGCCTTCCACA...ACTTGAGTTGAATTGTAGCCCTGTCCTCTCCACTTCTGAGACCACCTCCCTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR GCA 90 bp | CTGTTGGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCACACTACCTCTCTGAACTGCCTCGTGCACACTaGCCAGGGACAGCGCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: LLGSKSEMFSPVPHYLSELPRAH*PGTAPP Trigger: AGGAGGCGCTGTCCCTGGGCAGTGTGCACGAGGCAG...TTCAGAGAGGTAGTGTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CCA 90 bp | TTCAGGCCTGTTGGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCACACTACCTGAGGTCACGGCTTCCTaGCTGGCAGCAAAGGCGGAC | + |
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Preference number: 4 (lower is better) Translates to: FRPVGFQVRNVFSCSTLPEVTAS*LAAKAD Trigger: GTCCGCCTTTGCTGCCAGCCAGGAAGCCGTGACCTC...AGGTAGTGTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAGGCCTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR TCA 90 bp | ATTCAGGCCTGTTGGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCACACTACCGCTCCGTCCTTGTCCTaGATGTACAGCGGGGAGTGG | + |
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Preference number: 4 (lower is better) Translates to: IQACWVPSQKCFLLFHTTAPSLS*MYSGEW Trigger: CCACTCCCCGCTGTACATTCAGGACAAGGACGGAGC...GGTAGTGTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAGGCCTGAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CCA 90 bp | AGAGCCCAATATACAGAACACTTTTACAGGCTTATCACATTTAATCCAGCCCCTGGGTGGTGGTGGCCGTaGCCAGGTTCTCCACGGAGC | + |
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Preference number: 4 (lower is better) Translates to: RAQYTEHFYRLITFNPAPGWWWP*PGSPRS Trigger: GCTCCGTGGAGAACCTGGCCACGGCCACCACCACCC...AGGGGCTGGATTAAATGTGATAAGCCTGTAAAAGTGTTCTGTATATTGGGCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR TCA 90 bp | CCTGTTCCACACTACCTCTCTGAAAGGGTAGAGGGGAACCTTAGCCACAAGGTAGAGCATTCAGCCCACTaGTGTCTGAGTAAGGCAATG | + |
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Preference number: 4 (lower is better) Translates to: PVPHYLSERVEGNLSHKVEHSAH*CLSKAM Trigger: CATTGCCTTACTCAGACATCAGTGGGCTGAATGCTC...TACCTTGTGGCTAAGGTTCCCCTCTACCCTTTCAGAGAGGTAGTGTGGAACAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR TCA 90 bp | CCTAGACCAGGCTGTCCCCAGTGGGTGACGCCAGTCAAGAAGCTGAGGAAGGAGTCTGGAAACGGCACTTaGTTTTCATCTTGTATTTCA | + |
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Preference number: 4 (lower is better) Translates to: PRPGCPQWVTPVKKLRKESGNGT*FSSCIS Trigger: TGAAATACAAGATGAAAATCAAGTGCCGTTTCCAGA...CTCCTTCCTCAGCTTCTTGACTGGCGTCACCCACTGGGGACAGCCTGGTCTAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CCA 90 bp | TTCAGGCCTGTTGGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCACACTACCTCCGGCTCAGCTAACATaGCTTCTGCCTCGTGCACAC | + |
|
Preference number: 4 (lower is better) Translates to: FRPVGFQVRNVFSCSTLPPAQLT*LLPRAH Trigger: GTGTGCACGAGGCAGAAGCCATGTTAGCTGAGCCGG...AGGTAGTGTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAGGCCTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS-3UTR CCA 90 bp | TCAGAAGTGGAGAGGACAGGGCTACAATTCAACTCAAGTACTCCCCTAAATTCAGAGTCGGGACTCCACTaGGTTGATGACGTGGGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: SEVERTGLQFNSSTPLNSESGLH*VDDVGQ Trigger: CTGCCCCACGTCATCAACCCAGTGGAGTCCCGACTC...TGAATTTAGGGGAGTACTTGAGTTGAATTGTAGCCCTGTCCTCTCCACTTCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS-3UTR CCA 90 bp | TCAGAAGTGGAGAGGACAGGGCTACAATTCAACTCAAGTACTCCCCTAAATTCAGGCATTGGTGGCCACTaGAGCTCCGTCCTTGTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: SEVERTGLQFNSSTPLNSGIGGH*SSVLVL Trigger: CAGGACAAGGACGGAGCTCCAGTGGCCACCAATGCC...TGAATTTAGGGGAGTACTTGAGTTGAATTGTAGCCCTGTCCTCTCCACTTCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS-3UTR CCA 90 bp | ATTCAGGCCTGTTGGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCACACTACCGACTGTGGAAGGCATTaGTGGCCACTGGAGCTCCGT | + |
|
Preference number: 4 (lower is better) Translates to: IQACWVPSQKCFLLFHTTDCGRH*WPLELR Trigger: ACGGAGCTCCAGTGGCCACCAATGCCTTCCACAGTC...GGTAGTGTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAGGCCTGAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS-3UTR TCA 90 bp | ATTCAGGCCTGTTGGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCACACTACCAAGAGCAGCCTCAGCTaGGCCAGGAATACCTCCATC | + |
|
Preference number: 4 (lower is better) Translates to: IQACWVPSQKCFLLFHTTKSSLS*ARNTSI Trigger: GATGGAGGTATTCCTGGCTCAGCTGAGGCTGCTCTT...GGTAGTGTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAGGCCTGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS-3UTR CCA 90 bp | TCAGAAGTGGAGAGGACAGGGCTACAATTCAACTCAAGTACTCCCCTAAATTCAGGATGGGCACAGCCATaGGCAGGAAGAGGGGAATGT | + |
|
Preference number: 4 (lower is better) Translates to: SEVERTGLQFNSSTPLNSGWAQP*AGRGEC Trigger: ACATTCCCCTCTTCCTGCCCATGGCTGTGCCCATCC...TGAATTTAGGGGAGTACTTGAGTTGAATTGTAGCCCTGTCCTCTCCACTTCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS-3UTR CCA 90 bp | CTGTTGGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCACACTACCTCTCTGAAAAAGGTAGCTTCTCTTaGTCGTCCAGGGGCACAGAG | + |
|
Preference number: 4 (lower is better) Translates to: LLGSKSEMFSPVPHYLSEKGSFS*SSRGTE Trigger: CTCTGTGCCCCTGGACGACCAAGAGAAGCTACCTTT...TTCAGAGAGGTAGTGTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS GCA 90 bp | GTCCCAGAAGGATGGCCACCGCGGCGAAGAAAAGCGCGGAACGCTTaGCCCGGACCACCTCTAGGTCCGTGGCCGCAGCTCCTGCGGCCG | + |
|
Preference number: 5 (lower is better) Translates to: VPEGWPPRRRKARNA*PGPPLGPWPQLLRP Trigger: CGGCCGCAGGAGCTGCGGCCACGGACCTAGAGGTGGTCCGGGGCAAGCGTTCCGCGCTTTTCTTCGCCGCGGTGGCCATCCTTCTGGGAC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS GCA 90 bp | GAGGAGGTCACGGCTTCCTGGCTGGCAGCAAAGGCGGACGACAGGTaGCCAAGGGCTAAGGCCTTTGCTGCCTTCTGGACGGCAGCCACA | + |
|
Preference number: 5 (lower is better) Translates to: EEVTASWLAAKADDR*PRAKAFAAFWTAAT Trigger: TGTGGCTGCCGTCCAGAAGGCAGCAAAGGCCTTAGCCCTTGGGCACCTGTCGTCCGCCTTTGCTGCCAGCCAGGAAGCCGTGACCTCCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS CCA 90 bp | GGTAAGTCTCCGTCGTCTTCCACCAGAGCGGCAGTCCCAGAAGGATaGCCACCGCGGCGAAGAAAAGCGCGGAACGCTTGCCCCGGACCA | + |
|
Preference number: 5 (lower is better) Translates to: GKSPSSSTRAAVPEG*PPRRRKARNACPGP Trigger: TGGTCCGGGGCAAGCGTTCCGCGCTTTTCTTCGCCGCGGTGGCCATCCTTCTGGGACTGCCGCTCTGGTGGAAGACGACGGAGACTTACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS-3UTR CAA 90 bp | CTAGGAGGGGAAGGGAGCCCATCGTGGAGTGCCATCCGTAGAGAGCCCACGGGCTTGTCAGAGCTCCACTaGTCCTCGGGCAGGTGGTCG | + |
|
Preference number: 5 (lower is better) Translates to: LGGEGSPSWSAIRREPTGLSELH*SSGRWS Trigger: CGACCACCTGCCCGAGGACAAGTGGAGCTCTGACAA...GCCCGTGGGCTCTCTACGGATGGCACTCCACGATGGGCTCCCTTCCCCTCCTAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS-3UTR CAA 90 bp | CCTAGACCAGGCTGTCCCCAGTGGGTGACGCCAGTCAAGAAGCTGAGGAAGGAGCGGGACTCCACTGGGTaGATGACGTGGGGCAGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: PRPGCPQWVTPVKKLRKERDSTG*MTWGRL Trigger: CAGCCTGCCCCACGTCATCAACCCAGTGGAGTCCCG...CTCCTTCCTCAGCTTCTTGACTGGCGTCACCCACTGGGGACAGCCTGGTCTAGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS CCA 90 bp | TTGAGCGGCCGCCTCTTGTCAGAGCTCCACTTGTCCTCGGGCAGGTaGTCGGCCAAGGCAGCAGCAAGCACATCCTCCGTCAAGGACATG | + |
|
Preference number: 5 (lower is better) Translates to: LSGRLLSELHLSSGR*SAKAAASTSSVKDM Trigger: CATGTCCTTGACGGAGGATGTGCTTGCTGCTGCCTTGGCCGACCACCTGCCCGAGGACAAGTGGAGCTCTGACAAGAGGCGGCCGCTCAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS-3UTR CAA 90 bp | GGAGGGGAAGGGAGCCCATCGTGGAGTGCCATCCGTAGAGAGCCCACGGGCGAGTGGACATCGTGGGACTaGGGGTCTGGGTTGAGTAAA | + |
|
Preference number: 5 (lower is better) Translates to: GGEGSPSWSAIRREPTGEWTSWD*GSGLSK Trigger: TTTACTCAACCCAGACCCCAAGTCCCACGATGTCCA...CTCGCCCGTGGGCTCTCTACGGATGGCACTCCACGATGGGCTCCCTTCCCCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS CCA 90 bp | TCGGCCAAGGCAGCAGCAAGCACATCCTCCGTCAAGGACATGGCCTaGGCGACCTGGACTATGCGACGGCCGATGATGTTGAAGGCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: SAKAAASTSSVKDMA*ATWTMRRPMMLKAS Trigger: GGAAGCCTTCAACATCATCGGCCGTCGCATAGTCCAGGTCGCCCAGGCCATGTCCTTGACGGAGGATGTGCTTGCTGCTGCCTTGGCCGA 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS CCA 90 bp | GCAGCAGCAAGCACATCCTCCGTCAAGGACATGGCCTGGGCGACCTaGACTATGCGACGGCCGATGATGTTGAAGGCTTCCCTGTGGATC | + |
|
Preference number: 5 (lower is better) Translates to: AAASTSSVKDMAWAT*TMRRPMMLKASLWI Trigger: GATCCACAGGGAAGCCTTCAACATCATCGGCCGTCGCATAGTCCAGGTCGCCCAGGCCATGTCCTTGACGGAGGATGTGCTTGCTGCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS TCA 90 bp | TGGCACCATGAGCCGGAGCAGCAGAGCATTCAGCCCACTGATGTCTaGGTAAGGCAATGGGGCCCGGTAAGTCTCCGTCGTCTTCCACCA | + |
|
Preference number: 5 (lower is better) Translates to: WHHEPEQQSIQPTDV*VRQWGPVSLRRLPP Trigger: TGGTGGAAGACGACGGAGACTTACCGGGCCCCATTGCCTTACTCAGACATCAGTGGGCTGAATGCTCTGCTGCTCCGGCTCATGGTGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS TCA 90 bp | GTTGATGACGTGGGGCAGGCTGTGCATAGCCAAGGAGTAGCTGGATaGGGCTGGGTCAAAGCGGGGGTTCACGCCGAGCATGGCATAGTA | + |
|
Preference number: 5 (lower is better) Translates to: VDDVGQAVHSQGVAG*GWVKAGVHAEHGIV Trigger: TACTATGCCATGCTCGGCGTGAACCCCCGCTTTGACCCAGCCTCATCCAGCTACTCCTTGGCTATGCACAGCCTGCCCCACGTCATCAAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS TCA 90 bp | TCTCCACGGAGCGAGCCCAGAGCAATCGGTCCAGCTCCCAGGTCATaGGTCCTTCACTCTTTGGTCCTGAGAGCAGGCATTTGGGAGGCA | + |
|
Preference number: 5 (lower is better) Translates to: SPRSEPRAIGPAPRS*VLHSLVLRAGIWEA Trigger: TGCCTCCCAAATGCCTGCTCTCAGGACCAAAGAGTGAAGGACTCATGACCTGGGAGCTGGACCGATTGCTCTGGGCTCGCTCCGTGGAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS GCA 90 bp | GCCGATGATGTTGAAGGCTTCCCTGTGGATCAGCCCCCGGACAACTaGCGTCCTCTCAGGCCCAATGTAGCTCATCATGTCCTGGGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: ADDVEGFPVDQPPDN*RPLRPNVAHHVLGK Trigger: CTTCCCCAGGACATGATGAGCTACATTGGGCCTGAGAGGACGGCAGTTGTCCGGGGGCTGATCCACAGGGAAGCCTTCAACATCATCGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS CCA 90 bp | TTGCCCGCAACACTGAGGCGATTCAGGAAAGGCTGCACAAAGCGCTaGACAGCTCCCTCAATGTCCCAGTGGACATCGTGGGACTTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: LPATLRRFRKGCTKR*TAPSMSQWTSWDLG Trigger: CCCCAAGTCCCACGATGTCCACTGGGACATTGAGGGAGCTGTCCAGCGCTTTGTGCAGCCTTTCCTGAATCGCCTCAGTGTTGCGGGCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS-3UTR CAA 90 bp | CTAGGAGGGGAAGGGAGCCCATCGTGGAGTGCCATCCGTAGAGAGCCCACGGGCTCCTTGATGACAATGTaGCTGATCTTCCCCAGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: LGGEGSPSWSAIRREPTGSLMTM*LIFPRS Trigger: GCTTCTGGGGAAGATCAGCAACATTGTCATCAAGGA...GCCCGTGGGCTCTCTACGGATGGCACTCCACGATGGGCTCCCTTCCCCTCCTAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS CCA 90 bp | TTGGTCGTCCAGGGGCACAGAGTCCCGAGTAAACACAACTGTGACTaGCACCATGAGCCGGAGCAGCAGAGCATTCAGCCCACTGATGTC | + |
|
Preference number: 5 (lower is better) Translates to: LVVQGHRVPSKHNCD*HHEPEQQSIQPTDV Trigger: GACATCAGTGGGCTGAATGCTCTGCTGCTCCGGCTCATGGTGCCAGTCACAGTTGTGTTTACTCGGGACTCTGTGCCCCTGGACGACCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS TCA 90 bp | CAATCGGTCCAGCTCCCAGGTCATGAGTCCTTCACTCTTTGGTCCTaGGAGCAGGCATTTGGGAGGCACCTGGGGCTGAGCAATTCCAAA | + |
|
Preference number: 5 (lower is better) Translates to: QSVQLPGHESFTLWS*EQAFGRHLGLSNSK Trigger: TTTGGAATTGCTCAGCCCCAGGTGCCTCCCAAATGCCTGCTCTCAGGACCAAAGAGTGAAGGACTCATGACCTGGGAGCTGGACCGATTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CAA 90 bp | GGAGGGGAAGGGAGCCCATCGTGGAGTGCCATCCGTAGAGAGCCCACGGGCGAGCACTTGATTTTCATCTaGTATTTCAGAGGGATCTCT | + |
|
Preference number: 5 (lower is better) Translates to: GGEGSPSWSAIRREPTGEHLIFI*YFRGIS Trigger: AGAGATCCCTCTGAAATACAAGATGAAAATCAAGTG...CTCGCCCGTGGGCTCTCTACGGATGGCACTCCACGATGGGCTCCCTTCCCCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CAA 90 bp | CTGCCTCCTAGACCAGGCTGTCCCCAGTGGGTGACGCCAGTCAAGAAGCTGAGGGACTTGGGGTCTGGGTaGAGTAAACTGAAAGTGATT | + |
|
Preference number: 5 (lower is better) Translates to: LPPRPGCPQWVTPVKKLRDLGSG*SKLKVI Trigger: AATCACTTTCAGTTTACTCAACCCAGACCCCAAGTC...CCTCAGCTTCTTGACTGGCGTCACCCACTGGGGACAGCCTGGTCTAGGAGGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS CCA 90 bp | AGGAAAGGCTGCACAAAGCGCTGGACAGCTCCCTCAATGTCCCAGTaGACATCGTGGGACTTGGGGTCTGGGTTGAGTAAACTGAAAGTG | + |
|
Preference number: 5 (lower is better) Translates to: RKGCTKRWTAPSMSQ*TSWDLGSGLSKLKV Trigger: CACTTTCAGTTTACTCAACCCAGACCCCAAGTCCCACGATGTCCACTGGGACATTGAGGGAGCTGTCCAGCGCTTTGTGCAGCCTTTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS CCA 90 bp | AGAGGGATCTCTCGCTCATGCACAACGGTGAAAGGTAGCTTCTCTTaGTCGTCCAGGGGCACAGAGTCCCGAGTAAACACAACTGTGACT | + |
|
Preference number: 5 (lower is better) Translates to: RGISRSCTTVKGSFS*SSRGTESRVNTTVT Trigger: AGTCACAGTTGTGTTTACTCGGGACTCTGTGCCCCTGGACGACCAAGAGAAGCTACCTTTCACCGTTGTGCATGAGCGAGAGATCCCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS TCA 90 bp | TTTTCATCTTGTATTTCAGAGGGATCTCTCGCTCATGCACAACGGTaGAAGGTAGCTTCTCTTGGTCGTCCAGGGGCACAGAGTCCCGAG | + |
|
Preference number: 5 (lower is better) Translates to: FSSCISEGSLAHAQR*KVASLGRPGAQSPE Trigger: CTCGGGACTCTGTGCCCCTGGACGACCAAGAGAAGCTACCTTTCACCGTTGTGCATGAGCGAGAGATCCCTCTGAAATACAAGATGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS-3UTR CAA 90 bp | CTGTTGGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCACACTACCTCTCTGAATTGAGCGGCCGCCTCTaGTCAGAGCTCCACTTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: LLGSKSEMFSPVPHYLSELSGRL*SELHLS Trigger: GGACAAGTGGAGCTCTGACAAGAGGCGGCCGCTCAA...TTCAGAGAGGTAGTGTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS TCA 90 bp | CCTCGTGCTCCAAAGCTCTCCGGTAGGCCTTCTGGAAACGGCACTTaGTTTTCATCTTGTATTTCAGAGGGATCTCTCGCTCATGCACAA | + |
|
Preference number: 5 (lower is better) Translates to: PRAPKLSGRPSGNGT*FSSCISEGSLAHAQ Trigger: TTGTGCATGAGCGAGAGATCCCTCTGAAATACAAGATGAAAATCAAGTGCCGTTTCCAGAAGGCCTACCGGAGAGCTTTGGAGCACGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS-3UTR CAA 90 bp | TCAGAAGTGGAGAGGACAGGGCTACAATTCAACTCAAGTACTCCCCTAAATTCACGACGGCCGATGATGTaGAAGGCTTCCCTGTGGATC | + |
|
Preference number: 5 (lower is better) Translates to: SEVERTGLQFNSSTPLNSRRPMM*KASLWI Trigger: GATCCACAGGGAAGCCTTCAACATCATCGGCCGTCG...TGAATTTAGGGGAGTACTTGAGTTGAATTGTAGCCCTGTCCTCTCCACTTCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS-3UTR CAA 90 bp | AGAGCCCAATATACAGAACACTTTTACAGGCTTATCACATTTAATCCAGCCCCTGGACTGTGGAAGGCATaGGTGGCCACTGGAGCTCCG | + |
|
Preference number: 5 (lower is better) Translates to: RAQYTEHFYRLITFNPAPGLWKA*VATGAP Trigger: CGGAGCTCCAGTGGCCACCAATGCCTTCCACAGTCC...AGGGGCTGGATTAAATGTGATAAGCCTGTAAAAGTGTTCTGTATATTGGGCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS CCA 90 bp | CAGGAATACCTCCATCACCCGCACCATGTCCACCTCAACCCTCACTaGCAGCTCAGAAGCATTATAGATCTTCGGATCAACATTGTATAC | + |
|
Preference number: 5 (lower is better) Translates to: QEYLHHPHHVHLNPH*QLRSIIDLRINIVY Trigger: GTATACAATGTTGATCCGAAGATCTATAATGCTTCTGAGCTGCCAGTGAGGGTTGAGGTGGACATGGTGCGGGTGATGGAGGTATTCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS-3UTR CAA 90 bp | CTGTTGGGTTCCAAGTCAGAAATGTTTTCTCCTGTTCCACACTACCTCTCTGAATTCTGGAAACGGCACTaGATTTTCATCTTGTATTTC | + |
|
Preference number: 5 (lower is better) Translates to: LLGSKSEMFSPVPHYLSEFWKRH*IFILYF Trigger: GAAATACAAGATGAAAATCAAGTGCCGTTTCCAGAA...TTCAGAGAGGTAGTGTGGAACAGGAGAAAACATTTCTGACTTGGAACCCAACAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS CAA 90 bp | AGTCCCAGAAGGATGGCCACCGCGGCGAAGAAAAGCGCGGAACGCTaGCCCCGGACCACCTCTAGGTCCGTGGCCGCAGCTCCTGCGGCC | + |
|
Preference number: 6 (lower is better) Translates to: SPRRMATAAKKSAER*PRTTSRSVAAAPAA Trigger: GGCCGCAGGAGCTGCGGCCACGGACCTAGAGGTGGTCCGGGGCAAGCGTTCCGCGCTTTTCTTCGCCGCGGTGGCCATCCTTCTGGGACT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS GCA 72 bp | GGATGGCCACCGCGGCGAAGAAAAGCGCGGAACGCTTaGCCCGGACCACCTCTAGGTCCGTGGCCGCAGCTC | + |
|
Preference number: 6 (lower is better) Translates to: GWPPRRRKARNA*PGPPLGPWPQL Trigger: GAGCTGCGGCCACGGACCTAGAGGTGGTCCGGGGCAAGCGTTCCGCGCTTTTCTTCGCCGCGGTGGCCATCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS CAA 72 bp | AGGATGGCCACCGCGGCGAAGAAAAGCGCGGAACGCTaGCCCCGGACCACCTCTAGGTCCGTGGCCGCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: RMATAAKKSAER*PRTTSRSVAAA Trigger: AGCTGCGGCCACGGACCTAGAGGTGGTCCGGGGCAAGCGTTCCGCGCTTTTCTTCGCCGCGGTGGCCATCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS CCA 72 bp | CCGTCGTCTTCCACCAGAGCGGCAGTCCCAGAAGGATaGCCACCGCGGCGAAGAAAAGCGCGGAACGCTTGC | + |
|
Preference number: 6 (lower is better) Translates to: PSSSTRAAVPEG*PPRRRKARNAC Trigger: GCAAGCGTTCCGCGCTTTTCTTCGCCGCGGTGGCCATCCTTCTGGGACTGCCGCTCTGGTGGAAGACGACGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS CCA 72 bp | CAGGGAGGCAGCGCTGGACCCGAGTCGGGACTCCACTaGGTTGATGACGTGGGGCAGGCTGTGCATAGCCAA | + |
|
Preference number: 6 (lower is better) Translates to: QGGSAGPESGLH*VDDVGQAVHSQ Trigger: TTGGCTATGCACAGCCTGCCCCACGTCATCAACCCAGTGGAGTCCCGACTCGGGTCCAGCGCTGCCTCCCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS CAA 72 bp | CTGGACTTGAGCGGCCGCCTCTTGTCAGAGCTCCACTaGTCCTCGGGCAGGTGGTCGGCCAAGGCAGCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: LDLSGRLLSELH*SSGRWSAKAAA Trigger: TGCTGCTGCCTTGGCCGACCACCTGCCCGAGGACAAGTGGAGCTCTGACAAGAGGCGGCCGCTCAAGTCCAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS GCA 72 bp | TGCTTCTCCGGCTCAGCTAACATGGCTTCTGCCTCGTaGACACTGCCCAGGGACAGCGCCTCCTCCTCGTGC | + |
|
Preference number: 6 (lower is better) Translates to: CFSGSANMASAS*TLPRDSASSSC Trigger: GCACGAGGAGGAGGCGCTGTCCCTGGGCAGTGTGCACGAGGCAGAAGCCATGTTAGCTGAGCCGGAGAAGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS CCA 72 bp | CGCCTCTTGTCAGAGCTCCACTTGTCCTCGGGCAGGTaGTCGGCCAAGGCAGCAGCAAGCACATCCTCCGTC | + |
|
Preference number: 6 (lower is better) Translates to: RLLSELHLSSGR*SAKAAASTSSV Trigger: GACGGAGGATGTGCTTGCTGCTGCCTTGGCCGACCACCTGCCCGAGGACAAGTGGAGCTCTGACAAGAGGCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS CAA 90 bp | AAGGACATGGCCTGGGCGACCTGGACTATGCGACGGCCGATGATGTaGAAGGCTTCCCTGTGGATCAGCCCCCGGACAACTGCCGTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: KDMAWATWTMRRPMM*KASLWISPRTTAVL Trigger: GAGGACGGCAGTTGTCCGGGGGCTGATCCACAGGGAAGCCTTCAACATCATCGGCCGTCGCATAGTCCAGGTCGCCCAGGCCATGTCCTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS TCA 72 bp | GTGGGGCAGGCTGTGCATAGCCAAGGAGTAGCTGGATaGGGCTGGGTCAAAGCGGGGGTTCACGCCGAGCAT | + |
|
Preference number: 6 (lower is better) Translates to: VGQAVHSQGVAG*GWVKAGVHAEH Trigger: ATGCTCGGCGTGAACCCCCGCTTTGACCCAGCCTCATCCAGCTACTCCTTGGCTATGCACAGCCTGCCCCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS CCA 72 bp | AGGAGCCCTCAGCTTGCTTCTCCGGCTCAGCTAACATaGCTTCTGCCTCGTGCACACTGCCCAGGGACAGCG | + |
|
Preference number: 6 (lower is better) Translates to: RSPQLASPAQLT*LLPRAHCPGTA Trigger: CGCTGTCCCTGGGCAGTGTGCACGAGGCAGAAGCCATGTTAGCTGAGCCGGAGAAGCAAGCTGAGGGCTCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
||
| CDS CAA 72 bp | GCCTGGGCGACCTGGACTATGCGACGGCCGATGATGTaGAAGGCTTCCCTGTGGATCAGCCCCCGGACAACT | + |
|
Preference number: 6 (lower is better) Translates to: AWATWTMRRPMM*KASLWISPRTT Trigger: AGTTGTCCGGGGGCTGATCCACAGGGAAGCCTTCAACATCATCGGCCGTCGCATAGTCCAGGTCGCCCAGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS CAA 90 bp | GGCTGGCAGCAAAGGCGGACGACAGGTGCCCAAGGGCTAAGGCCTTaGCTGCCTTCTGGACGGCAGCCACAGCCCTATATACCTCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: GWQQRRTTGAQGLRP*LPSGRQPQPYIPQK Trigger: CTTCTGAGGTATATAGGGCTGTGGCTGCCGTCCAGAAGGCAGCAAAGGCCTTAGCCCTTGGGCACCTGTCGTCCGCCTTTGCTGCCAGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS CCA 72 bp | GCAGCAGCAAGCACATCCTCCGTCAAGGACATGGCCTaGGCGACCTGGACTATGCGACGGCCGATGATGTTG | + |
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Preference number: 6 (lower is better) Translates to: AAASTSSVKDMA*ATWTMRRPMML Trigger: CAACATCATCGGCCGTCGCATAGTCCAGGTCGCCCAGGCCATGTCCTTGACGGAGGATGTGCTTGCTGCTGC 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS TCA 72 bp | AAGGCATTGGTGGCCACTGGAGCTCCGTCCTTGTCCTaGATGTACAGCGGGGAGTGGGCAAGCTCAGGCACA | + |
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Preference number: 6 (lower is better) Translates to: KALVATGAPSLS*MYSGEWASSGT Trigger: TGTGCCTGAGCTTGCCCACTCCCCGCTGTACATTCAGGACAAGGACGGAGCTCCAGTGGCCACCAATGCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS TCA 72 bp | CAGCTCCCAGGTCATGAGTCCTTCACTCTTTGGTCCTaGGAGCAGGCATTTGGGAGGCACCTGGGGCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: QLPGHESFTLWS*EQAFGRHLGLS Trigger: GCTCAGCCCCAGGTGCCTCCCAAATGCCTGCTCTCAGGACCAAAGAGTGAAGGACTCATGACCTGGGAGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS CCA 72 bp | AGCACATCCTCCGTCAAGGACATGGCCTGGGCGACCTaGACTATGCGACGGCCGATGATGTTGAAGGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: STSSVKDMAWAT*TMRRPMMLKAS Trigger: GGAAGCCTTCAACATCATCGGCCGTCGCATAGTCCAGGTCGCCCAGGCCATGTCCTTGACGGAGGATGTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS CAA 72 bp | CAAAGGCGGACGACAGGTGCCCAAGGGCTAAGGCCTTaGCTGCCTTCTGGACGGCAGCCACAGCCCTATATA | + |
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Preference number: 6 (lower is better) Translates to: QRRTTGAQGLRP*LPSGRQPQPYI Trigger: TATATAGGGCTGTGGCTGCCGTCCAGAAGGCAGCAAAGGCCTTAGCCCTTGGGCACCTGTCGTCCGCCTTTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS GCA 72 bp | GTTGAAGGCTTCCCTGTGGATCAGCCCCCGGACAACTaGCGTCCTCTCAGGCCCAATGTAGCTCATCATGTC | + |
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Preference number: 6 (lower is better) Translates to: VEGFPVDQPPDN*RPLRPNVAHHV Trigger: GACATGATGAGCTACATTGGGCCTGAGAGGACGGCAGTTGTCCGGGGGCTGATCCACAGGGAAGCCTTCAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS TCA 72 bp | AGCGAGCCCAGAGCAATCGGTCCAGCTCCCAGGTCATaGGTCCTTCACTCTTTGGTCCTGAGAGCAGGCATT | + |
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Preference number: 6 (lower is better) Translates to: SEPRAIGPAPRS*VLHSLVLRAGI Trigger: AATGCCTGCTCTCAGGACCAAAGAGTGAAGGACTCATGACCTGGGAGCTGGACCGATTGCTCTGGGCTCGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS CCA 72 bp | ACATTGTATACCATAATGCCACCCCAGCGGGGACTGTaGAAGGCATTGGTGGCCACTGGAGCTCCGTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: TLYTIMPPQRGL*KALVATGAPSL Trigger: CAAGGACGGAGCTCCAGTGGCCACCAATGCCTTCCACAGTCCCCGCTGGGGTGGCATTATGGTATACAATGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS CCA 72 bp | CGCTGGACAGCTCCCTCAATGTCCCAGTGGACATCGTaGGACTTGGGGTCTGGGTTGAGTAAACTGAAAGTG | + |
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Preference number: 6 (lower is better) Translates to: RWTAPSMSQWTS*DLGSGLSKLKV Trigger: CACTTTCAGTTTACTCAACCCAGACCCCAAGTCCCACGATGTCCACTGGGACATTGAGGGAGCTGTCCAGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS CCA 72 bp | TGCACAAAGCGCTGGACAGCTCCCTCAATGTCCCAGTaGACATCGTGGGACTTGGGGTCTGGGTTGAGTAAA | + |
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Preference number: 6 (lower is better) Translates to: CTKRWTAPSMSQ*TSWDLGSGLSK Trigger: TTTACTCAACCCAGACCCCAAGTCCCACGATGTCCACTGGGACATTGAGGGAGCTGTCCAGCGCTTTGTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS CAA 90 bp | TGGACGGCAGCCACAGCCCTATATACCTCAGAAGCCACATCATCCTaGATGACAATGTTGCTGATCTTCCCCAGAAGCTGGGCCAGGGAG | + |
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Preference number: 6 (lower is better) Translates to: WTAATALYTSEATSS*MTMLLIFPRSWARE Trigger: CTCCCTGGCCCAGCTTCTGGGGAAGATCAGCAACATTGTCATCAAGGATGATGTGGCTTCTGAGGTATATAGGGCTGTGGCTGCCGTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS CCA 72 bp | TCTCGCTCATGCACAACGGTGAAAGGTAGCTTCTCTTaGTCGTCCAGGGGCACAGAGTCCCGAGTAAACACA | + |
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Preference number: 6 (lower is better) Translates to: SRSCTTVKGSFS*SSRGTESRVNT Trigger: TGTGTTTACTCGGGACTCTGTGCCCCTGGACGACCAAGAGAAGCTACCTTTCACCGTTGTGCATGAGCGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS TCA 72 bp | TGTATTTCAGAGGGATCTCTCGCTCATGCACAACGGTaGAAGGTAGCTTCTCTTGGTCGTCCAGGGGCACAG | + |
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Preference number: 6 (lower is better) Translates to: CISEGSLAHAQR*KVASLGRPGAQ Trigger: CTGTGCCCCTGGACGACCAAGAGAAGCTACCTTTCACCGTTGTGCATGAGCGAGAGATCCCTCTGAAATACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS CCA 72 bp | ATGAGGCTGGGTCAAAGCGGGGGTTCACGCCGAGCATaGCATAGTATAGGATCTGAGAGTCCACAGAGAAAT | + |
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Preference number: 6 (lower is better) Translates to: MRLGQSGGSRRA*HSIGSESPQRN Trigger: ATTTCTCTGTGGACTCTCAGATCCTATACTATGCCATGCTCGGCGTGAACCCCCGCTTTGACCCAGCCTCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS CCA 72 bp | CTCCATCACCCGCACCATGTCCACCTCAACCCTCACTaGCAGCTCAGAAGCATTATAGATCTTCGGATCAAC | + |
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Preference number: 6 (lower is better) Translates to: LHHPHHVHLNPH*QLRSIIDLRIN Trigger: GTTGATCCGAAGATCTATAATGCTTCTGAGCTGCCAGTGAGGGTTGAGGTGGACATGGTGCGGGTGATGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS CAA 72 bp | ACAGCTCCCTCAATGTCCCAGTGGACATCGTGGGACTaGGGGTCTGGGTTGAGTAAACTGAAAGTGATTTCA | + |
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Preference number: 6 (lower is better) Translates to: TAPSMSQWTSWD*GSGLSKLKVIS Trigger: TGAAATCACTTTCAGTTTACTCAACCCAGACCCCAAGTCCCACGATGTCCACTGGGACATTGAGGGAGCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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| CDS TCA 72 bp | ATCTTCTCAGGCTTTTTCCAGGACTTGCGAGTTTCCTaGAAGATCTTAACCAGGGACAGGAGGATGGGCACA | + |
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Preference number: 6 (lower is better) Translates to: IFSGFFQDLRVS*KILTRDRRMGT Trigger: TGTGCCCATCCTCCTGTCCCTGGTTAAGATCTTTCAGGAAACTCGCAAGTCCTGGAAAAAGCCTGAGAAGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048073.9 |
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