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Pregenerated sensors for PIGP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022940

Ensembl transcript IDs: ENSMUST00000113910.8, ENSMUST00000113914.8, ENSMUST00000113917.8

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAAACTGGCTTCACTCGATACACTGGCCTAGCTCCAGGCTCTTCATaGATTCCTCCAGCTTCAGCACTCCACTTTGCTGGTGCAGGCGGT +
Preference number: 1 (lower is better)
Translates to: ETGFTRYTGLAPGSS*IPPASALHFAGAGG
Trigger: ACCGCCTGCACCAGCAAAGTGGAGTGCTGAAGCTGGAGGAATCCATGAAGAGCCTGGAGCTAGGCCAGTGTATCGAGTGAAGCCAGTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113917.8
3UTR CCA 90 bp CAGGTGGGAGACACAATGACTGGAAACTGGCTTCACTCGATACACTaGCCTAGCTCCAGGCTCTTCATGGATTCCTCCAGCTTCAGCACT +
Preference number: 1 (lower is better)
Translates to: QVGDTMTGNWLHSIH*PSSRLFMDSSSFST
Trigger: AGTGCTGAAGCTGGAGGAATCCATGAAGAGCCTGGAGCTAGGCCAGTGTATCGAGTGAAGCCAGTTTCCAGTCATTGTGTCTCCCACCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113917.8
3UTR-3UTR CCA 90 bp ATCCCGCCAGAACCAAACACTGGCCACAGCTTAGCCAGCGTCCAGGTGGGAGACGCTCCAGGCTCTTCATaGATTCCTCCAGCTTCAGCA +
Preference number: 2 (lower is better)
Translates to: IPPEPNTGHSLASVQVGDAPGSS*IPPASA
Trigger: TGCTGAAGCTGGAGGAATCCATGAAGAGCCTGGAGC...GTCTCCCACCTGGACGCTGGCTAAGCTGTGGCCAGTGTTTGGTTCTGGCGGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113917.8
3UTR CCA 72 bp TTCACTCGATACACTGGCCTAGCTCCAGGCTCTTCATaGATTCCTCCAGCTTCAGCACTCCACTTTGCTGGT +
Preference number: 3 (lower is better)
Translates to: FTRYTGLAPGSS*IPPASALHFAG
Trigger: ACCAGCAAAGTGGAGTGCTGAAGCTGGAGGAATCCATGAAGAGCCTGGAGCTAGGCCAGTGTATCGAGTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113917.8
3UTR CCA 72 bp GACACAATGACTGGAAACTGGCTTCACTCGATACACTaGCCTAGCTCCAGGCTCTTCATGGATTCCTCCAGC +
Preference number: 3 (lower is better)
Translates to: DTMTGNWLHSIH*PSSRLFMDSSS
Trigger: GCTGGAGGAATCCATGAAGAGCCTGGAGCTAGGCCAGTGTATCGAGTGAAGCCAGTTTCCAGTCATTGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113917.8
CDS-3UTR TCA 90 bp CACTGGCCACAGCTTAGCCAGCGTCCAGGTGGGAGACACAATGACTGGAAACTGATCCCTGTGATCGTATaGATGGAGTCAAGTGGAGAG +
Preference number: 4 (lower is better)
Translates to: HWPQLSQRPGGRHNDWKLIPVIV*MESSGE
Trigger: CTCTCCACTTGACTCCATTCATACGATCACAGGGAT...CAGTTTCCAGTCATTGTGTCTCCCACCTGGACGCTGGCTAAGCTGTGGCCAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113917.8
CDS-3UTR CCA 90 bp GCCAGCGTCCAGGTGGGAGACACAATGACTGGAAACTGGCTTCACTCGATACACGCTTTAGACAATCTGTaGAAAAGGAACACAATCGTC +
Preference number: 4 (lower is better)
Translates to: ASVQVGDTMTGNWLHSIHALDNL*KRNTIV
Trigger: GACGATTGTGTTCCTTTTCCACAGATTGTCTAAAGC...GTGTATCGAGTGAAGCCAGTTTCCAGTCATTGTGTCTCCCACCTGGACGCTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113917.8
CDS-3UTR GCA 90 bp AAGCATCCATTTAGCCCGAACCTTGTTGTTTTGAGAGCCGCAAATGAAGACCTCGAGGTAGACGGGCAATaGAACCGCCCAGTATTTTTG +
Preference number: 4 (lower is better)
Translates to: KHPFSPNLVVLRAANEDLEVDGQ*NRPVFL
Trigger: CAAAAATACTGGGCGGTTGCATTGCCCGTCTACCTC...GAGGTCTTCATTTGCGGCTCTCAAAACAACAAGGTTCGGGCTAAATGGATGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113917.8
CDS-3UTR TCA 90 bp GACACAATGACTGGAAACTGGCTTCACTCGATACACTGGCCTAGCTCCAGGCTCAGGTACTCATCATGTTaGTTCCAAATAAGAGCACAT +
Preference number: 4 (lower is better)
Translates to: DTMTGNWLHSIHWPSSRLRYSSC*FQIRAH
Trigger: ATGTGCTCTTATTTGGAATCAACATGATGAGTACCT...GAGCCTGGAGCTAGGCCAGTGTATCGAGTGAAGCCAGTTTCCAGTCATTGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113917.8
CDS CCA 90 bp CGCCTCAGGAGCCGCGGAGCGTTCGCTCTGCGGGTCTGGTTGACGTaGAGGGCCGGAGGCGTCGGCAGCCCGCGTCTGAGGCTCGCGGGC +
Preference number: 5 (lower is better)
Translates to: RLRSRGAFALRVWLT*RAGGVGSPRLRLAG
Trigger: GCCCGCGAGCCTCAGACGCGGGCTGCCGACGCCTCCGGCCCTCCACGTCAACCAGACCCGCAGAGCGAACGCTCCGCGGCTCCTGAGGCG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113914.8
CDS-3UTR CAA 90 bp CCAGAACCAAACACTGGCCACAGCTTAGCCAGCGTCCAGGTGGGAGACACAATGGAGGTACTCATCATGTaGATTCCAAATAAGAGCACA +
Preference number: 5 (lower is better)
Translates to: PEPNTGHSLASVQVGDTMEVLIM*IPNKST
Trigger: TGTGCTCTTATTTGGAATCAACATGATGAGTACCTC...CATTGTGTCTCCCACCTGGACGCTGGCTAAGCTGTGGCCAGTGTTTGGTTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113917.8
CDS CCA 72 bp CGCCTCAGGAGCCGCGGAGCGTTCGCTCTGCGGGTCTaGTTGACGTGGAGGGCCGGAGGCGTCGGCAGCCCG +
Preference number: 6 (lower is better)
Translates to: RLRSRGAFALRV*LTWRAGGVGSP
Trigger: CGGGCTGCCGACGCCTCCGGCCCTCCACGTCAACCAGACCCGCAGAGCGAACGCTCCGCGGCTCCTGAGGCG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113914.8
CDS TCA 72 bp TCAGGAGCCGCGGAGCGTTCGCTCTGCGGGTCTGGTTaGCGTGGAGGGCCGGAGGCGTCGGCAGCCCGCGTC +
Preference number: 6 (lower is better)
Translates to: SGAAERSLCGSG*RGGPEASAARV
Trigger: GACGCGGGCTGCCGACGCCTCCGGCCCTCCACGTCAACCAGACCCGCAGAGCGAACGCTCCGCGGCTCCTGA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113914.8
CDS CCA 72 bp AGCCGCGGAGCGTTCGCTCTGCGGGTCTGGTTGACGTaGAGGGCCGGAGGCGTCGGCAGCCCGCGTCTGAGG +
Preference number: 6 (lower is better)
Translates to: SRGAFALRVWLT*RAGGVGSPRLR
Trigger: CCTCAGACGCGGGCTGCCGACGCCTCCGGCCCTCCACGTCAACCAGACCCGCAGAGCGAACGCTCCGCGGCT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113914.8
CDS CAA 72 bp CTCAGGAGCCGCGGAGCGTTCGCTCTGCGGGTCTGGTaGACGTGGAGGGCCGGAGGCGTCGGCAGCCCGCGT +
Preference number: 6 (lower is better)
Translates to: LRSRGAFALRVW*TWRAGGVGSPR
Trigger: ACGCGGGCTGCCGACGCCTCCGGCCCTCCACGTCAACCAGACCCGCAGAGCGAACGCTCCGCGGCTCCTGAG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113914.8
CDS TCA 72 bp CATCTTCCCTGTGGCTTTAGACAATCTCGGACCCTCTaGGGCGAGGAAGGGGCCCGGGCTGGACAGAGGCCC +
Preference number: 6 (lower is better)
Translates to: HLPCGFRQSRTL*GEEGARAGQRP
Trigger: GGGCCTCTGTCCAGCCCGGGCCCCTTCCTCGCCTCAGAGGGTCCGAGATTGTCTAAAGCCACAGGGAAGATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113910.8