Pregenerated sensors for PIGM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050229Ensembl transcript IDs: ENSMUST00000052455.4
Found 112 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAGACAGAGGCAGGCAGATCTTTGAGTCAACCTTGCCTACAGAGTaGGTTCCAGGAAAGCCAGGGCTGCACAGAGAAACCCTGGGTCAA | + |
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Preference number: 1 (lower is better) Translates to: GDRGRQIFESTLPTE*VPGKPGLHRETLGQ Trigger: TTGACCCAGGGTTTCTCTGTGCAGCCCTGGCTTTCCTGGAACTCACTCTGTAGGCAAGGTTGACTCAAAGATCTGCCTGCCTCTGTCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR TCA 90 bp | TGGCACATTTTTAATCCCAGGACCCAAGAGGCTAGAGCAGGAGGATaGGTTGGAGGTTGGTCGGGATTGCACACTGAGTCTGAGGCATCC | + |
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Preference number: 1 (lower is better) Translates to: WHIFNPRTQEARAGG*VGGWSGLHTESEAS Trigger: GGATGCCTCAGACTCAGTGTGCAATCCCGACCAACCTCCAACTCATCCTCCTGCTCTAGCCTCTTGGGTCCTGGGATTAAAAATGTGCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR GCA 90 bp | ACCCACCCACATGGTGGCTCAGAACCATCTATTCTAGAAATCCAATaGCCTCTTCTGGCCACCTTGGGCACTAGGAATGCACATGGTGCA | + |
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Preference number: 1 (lower is better) Translates to: THPHGGSEPSILEIQ*PLLATLGTRNAHGA Trigger: TGCACCATGTGCATTCCTAGTGCCCAAGGTGGCCAGAAGAGGGCATTGGATTTCTAGAATAGATGGTTCTGAGCCACCATGTGGGTGGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR TCA 90 bp | GTCTTTTCTCCGCTTAACTTACTAAATGTCTCTGCAGCATGGGGCTaGAGAGTTGGCTCAGTGGTGAAGAGTGCTAGCTGCTCTTCCCGG | + |
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Preference number: 1 (lower is better) Translates to: VFSPLNLLNVSAAWG*RVGSVVKSASCSSR Trigger: CCGGGAAGAGCAGCTAGCACTCTTCACCACTGAGCCAACTCTTCAGCCCCATGCTGCAGAGACATTTAGTAAGTTAAGCGGAGAAAAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR TCA 90 bp | AAAGCGACCAGACAGTGCAGTGTAAAAAGGTACAGCTGCCAAGACTaGCAACCCAAGTTTGATCCTAGGGCCAGCATAATGGAAAGAGGG | + |
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Preference number: 1 (lower is better) Translates to: KATRQCSVKRYSCQD*QPKFDPRASIMERG Trigger: CCCTCTTTCCATTATGCTGGCCCTAGGATCAAACTTGGGTTGTCAGTCTTGGCAGCTGTACCTTTTTACACTGCACTGTCTGGTCGCTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR TCA 90 bp | CTAAGTTACTATGCTATTGTAGCTGACCTGCCTTCTGTGATCCTCTaGGGCAGAGACTGCAGTTTCTGGCACTTAGCACCTCTTCCTCAA | + |
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Preference number: 1 (lower is better) Translates to: LSYYAIVADLPSVIL*GRDCSFWHLAPLPQ Trigger: TTGAGGAAGAGGTGCTAAGTGCCAGAAACTGCAGTCTCTGCCTCAGAGGATCACAGAAGGCAGGTCAGCTACAATAGCATAGTAACTTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR TCA 90 bp | AGCACACCTGTTAATTCTAGTACTTGGGAGGTAGACTCAAGAGGCTaGGTTCAAGGCCAGCCTCTGTTACATAACAAGTTTGAGACCAGC | + |
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Preference number: 1 (lower is better) Translates to: STPVNSSTWEVDSRG*VQGQPLLHNKFETS Trigger: GCTGGTCTCAAACTTGTTATGTAACAGAGGCTGGCCTTGAACTCAGCCTCTTGAGTCTACCTCCCAAGTACTAGAATTAACAGGTGTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR CCA 90 bp | GGCTTTCTTCTCATCAAGCAAATGAGCCCTAAGACTTCTAAAGGATaGACCATGGACCTCAGTTCTTGGGCCCCCTTTATATATAAGGCC | + |
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Preference number: 1 (lower is better) Translates to: GFLLIKQMSPKTSKG*TMDLSSWAPFIYKA Trigger: GGCCTTATATATAAAGGGGGCCCAAGAACTGAGGTCCATGGTCCATCCTTTAGAAGTCTTAGGGCTCATTTGCTTGATGAGAAGAAAGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR TCA 90 bp | CTTCTCAACTGTGAAACAGGAATGGCTTTCTTCTCATCAAGCAAATaGGCCCTAAGACTTCTAAAGGATGGACCATGGACCTCAGTTCTT | + |
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Preference number: 1 (lower is better) Translates to: LLNCETGMAFFSSSK*ALRLLKDGPWTSVL Trigger: AAGAACTGAGGTCCATGGTCCATCCTTTAGAAGTCTTAGGGCTCATTTGCTTGATGAGAAGAAAGCCATTCCTGTTTCACAGTTGAGAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR CCA 90 bp | TATTCATGGAGAGTTTGCTTCTCAAGTTTTACCATCATAAGCACCTaGAGATGGAGCACAACCCGAAGGGTCATTGAATCTTTTCAGGAG | + |
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Preference number: 1 (lower is better) Translates to: YSWRVCFSSFTIIST*RWSTTRRVIESFQE Trigger: CTCCTGAAAAGATTCAATGACCCTTCGGGTTGTGCTCCATCTCCAGGTGCTTATGATGGTAAAACTTGAGAAGCAAACTCTCCATGAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR CCA 90 bp | ATGAGCCCTAAGACTTCTAAAGGATGGACCATGGACCTCAGTTCTTaGGCCCCCTTTATATATAAGGCCAACACTGGTTTTAATTTCTAT | + |
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Preference number: 1 (lower is better) Translates to: MSPKTSKGWTMDLSS*APFIYKANTGFNFY Trigger: ATAGAAATTAAAACCAGTGTTGGCCTTATATATAAAGGGGGCCCAAGAACTGAGGTCCATGGTCCATCCTTTAGAAGTCTTAGGGCTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR TCA 90 bp | TCAAAAATATTTCAGCATCTTCTAGCTTCACCGGCTTCTCAACTGTaGAACAGGAATGGCTTTCTTCTCATCAAGCAAATGAGCCCTAAG | + |
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Preference number: 1 (lower is better) Translates to: SKIFQHLLASPASQL*NRNGFLLIKQMSPK Trigger: CTTAGGGCTCATTTGCTTGATGAGAAGAAAGCCATTCCTGTTTCACAGTTGAGAAGCCGGTGAAGCTAGAAGATGCTGAAATATTTTTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR TCA 90 bp | CTAAAAAGTTACTTGTCTAATTCTAAGTTACTATGCTATTGTAGCTaGCCTGCCTTCTGTGATCCTCTGAGGCAGAGACTGCAGTTTCTG | + |
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Preference number: 1 (lower is better) Translates to: LKSYLSNSKLLCYCS*PAFCDPLRQRLQFL Trigger: CAGAAACTGCAGTCTCTGCCTCAGAGGATCACAGAAGGCAGGTCAGCTACAATAGCATAGTAACTTAGAATTAGACAAGTAACTTTTTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR CCA 90 bp | TGGGCCCCCTTTATATATAAGGCCAACACTGGTTTTAATTTCTATTaGAACAAAGGAACTTTCACTAGAGTGCTTAGAATGTTCAGGGAG | + |
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Preference number: 1 (lower is better) Translates to: WAPFIYKANTGFNFY*NKGTFTRVLRMFRE Trigger: CTCCCTGAACATTCTAAGCACTCTAGTGAAAGTTCCTTTGTTCCAATAGAAATTAAAACCAGTGTTGGCCTTATATATAAAGGGGGCCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR CCA 90 bp | CACGCAGCACTCATGCTTTACAGCAAGCAGTCTTCCTTTCTATCCTaGAATTTTCAGAGTGTAGGATTTATGCCTTATAAACAATGTTCT | + |
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Preference number: 1 (lower is better) Translates to: HAALMLYSKQSSFLS*NFQSVGFMPYKQCS Trigger: AGAACATTGTTTATAAGGCATAAATCCTACACTCTGAAAATTCCAGGATAGAAAGGAAGACTGCTTGCTGTAAAGCATGAGTGCTGCGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR GCA 90 bp | GTGTGTGCACCCATGTACGTGCACAAGCACACGTCACTGCATGCTCGTGGAAGTCAGGAAAGCCAGGGCTaGACAGAGAAACCCTGGGTC | + |
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Preference number: 2 (lower is better) Translates to: VCAPMYVHKHTSLHARGSQESQG*TEKPWV Trigger: GACCCAGGGTTTCTCTGTGCAGCCCTGGCTTTCCTG...ACTTCCACGAGCATGCAGTGACGTGTGCTTGTGCACGTACATGGGTGCACACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR CAA 90 bp | ACATTTTTAATCCCAGGACCCAAGAGGCTAGAGCAGGAGGATGAGTaGGAGGTTGGTCGGGATTGCACACTGAGTCTGAGGCATCCGAGG | + |
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Preference number: 2 (lower is better) Translates to: TFLIPGPKRLEQEDE*EVGRDCTLSLRHPR Trigger: CCTCGGATGCCTCAGACTCAGTGTGCAATCCCGACCAACCTCCAACTCATCCTCCTGCTCTAGCCTCTTGGGTCCTGGGATTAAAAATGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR TCA 90 bp | GCATTAGGGGTGTGCCCTCAAAAGGATCTCAGAGACCCATGTCTCAGACTCTGTCTGACCTGCCTTCTGTaGTCCTCTGAGGCAGAGACT | + |
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Preference number: 2 (lower is better) Translates to: ALGVCPQKDLRDPCLRLCLTCLL*SSEAET Trigger: AGTCTCTGCCTCAGAGGATCACAGAAGGCAGGTCAG...ACAGAGTCTGAGACATGGGTCTCTGAGATCCTTTTGAGGGCACACCCCTAATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR CCA 90 bp | TTCAGAGGCAAGAAGAGTGCAGTGAGCTTGAGGCCAGCCTGTGCTGTAGAATGGCTAAAGGATGGACCATaGACCTCAGTTCTTGGGCCC | + |
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Preference number: 2 (lower is better) Translates to: FRGKKSAVSLRPACAVEWLKDGP*TSVLGP Trigger: GGGCCCAAGAACTGAGGTCCATGGTCCATCCTTTAG...CCATTCTACAGCACAGGCTGGCCTCAAGCTCACTGCACTCTTCTTGCCTCTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR CAA 90 bp | GAAAAGAATGTCTTTAAGGAAAAGCTAAAGCTCGCCCTGGCTGAGTaGGATGCCGTCCAGCAGAAGGCGGAGCAGAGTGAAAGGCTGGGT | + |
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Preference number: 2 (lower is better) Translates to: EKNVFKEKLKLALAE*DAVQQKAEQSERLG Trigger: ACCCAGCCTTTCACTCTGCTCCGCCTTCTGCTGGACGGCATCCAACTCAGCCAGGGCGAGCTTTAGCTTTTCCTTAAAGACATTCTTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR CCA 90 bp | TTGCTTCTCAAGTTTTACCATCATAAGCACCTGGAGATGGAGCACAACCCGAAGTCGCCCTGGCTGAGTTaGATGCCGTCCAGCAGAAGG | + |
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Preference number: 2 (lower is better) Translates to: LLLKFYHHKHLEMEHNPKSPWLS*MPSSRR Trigger: CCTTCTGCTGGACGGCATCCAACTCAGCCAGGGCGA...CTTCGGGTTGTGCTCCATCTCCAGGTGCTTATGATGGTAAAACTTGAGAAGCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR TCA 90 bp | TTCAGAGGCAAGAAGAGTGCAGTGAGCTTGAGGCCAGCCTGTGCTGTAGAATGGAACAGTAGCACCATGTaGCAGGAACAAACGCTGCTA | + |
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Preference number: 2 (lower is better) Translates to: FRGKKSAVSLRPACAVEWNSSTM*QEQTLL Trigger: TAGCAGCGTTTGTTCCTGTCACATGGTGCTACTGTT...CCATTCTACAGCACAGGCTGGCCTCAAGCTCACTGCACTCTTCTTGCCTCTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR TCA 90 bp | CCCAAGAGGCTAGAGCAGGAGGATGAGTTGGAGGTTGGTCGGGATTGCACACTGAAACTTTCTTCTTGCTaGGTGTGGTTACACACTCCT | + |
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Preference number: 2 (lower is better) Translates to: PKRLEQEDELEVGRDCTLKLSSC*VWLHTP Trigger: AGGAGTGTGTAACCACACTCAGCAAGAAGAAAGTTT...CAGTGTGCAATCCCGACCAACCTCCAACTCATCCTCCTGCTCTAGCCTCTTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR GCA 90 bp | CCCAAGAGGCTAGAGCAGGAGGATGAGTTGGAGGTTGGTCGGGATTGCACACTGATTAGTTTGTGTGTGTaGACCCATGTACGTGCACAA | + |
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Preference number: 2 (lower is better) Translates to: PKRLEQEDELEVGRDCTLISLCV*THVRAQ Trigger: TTGTGCACGTACATGGGTGCACACACACAAACTAAT...CAGTGTGCAATCCCGACCAACCTCCAACTCATCCTCCTGCTCTAGCCTCTTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR CCA 90 bp | CAACCCGAAGGGTCATTGAATCTTTTCAGGAGCGCCTTAGGAAAGGACACTCTGGTCACTGCATGCTCGTaGAAGTCAGAGGACAACTTT | + |
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Preference number: 2 (lower is better) Translates to: QPEGSLNLFRSALGKDTLVTACS*KSEDNF Trigger: AAAGTTGTCCTCTGACTTCCACGAGCATGCAGTGAC...CAGAGTGTCCTTTCCTAAGGCGCTCCTGAAAAGATTCAATGACCCTTCGGGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR CCA 90 bp | TTGCTTCTCAAGTTTTACCATCATAAGCACCTGGAGATGGAGCACAACCCGAAGGGCTGGGTAAGCAGCTaGAAGAGGAATCGAAGTCAA | + |
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Preference number: 2 (lower is better) Translates to: LLLKFYHHKHLEMEHNPKGWVSS*KRNRSQ Trigger: TTGACTTCGATTCCTCTTCCAGCTGCTTACCCAGCC...CTTCGGGTTGTGCTCCATCTCCAGGTGCTTATGATGGTAAAACTTGAGAAGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR TCA 90 bp | CAACCCGAAGGGTCATTGAATCTTTTCAGGAGCGCCTTAGGAAAGGACACTCTGTGCTCTAAGAGGAAATaGCTTCCGAAAAGAATGTCT | + |
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Preference number: 2 (lower is better) Translates to: QPEGSLNLFRSALGKDTLCSKRK*LPKRMS Trigger: AGACATTCTTTTCGGAAGTCATTTCCTCTTAGAGCA...CAGAGTGTCCTTTCCTAAGGCGCTCCTGAAAAGATTCAATGACCCTTCGGGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR TCA 90 bp | CAACCCGAAGGGTCATTGAATCTTTTCAGGAGCGCCTTAGGAAAGGACACTCTGCCAGAAGAGAGCAAGTaGAGTTATACTCAAAACTTA | + |
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Preference number: 2 (lower is better) Translates to: QPEGSLNLFRSALGKDTLPEESK*SYTQNL Trigger: TAAGTTTTGAGTATAACTTCACTTGCTCTCTTCTGG...CAGAGTGTCCTTTCCTAAGGCGCTCCTGAAAAGATTCAATGACCCTTCGGGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR GCA 90 bp | GCATTAGGGGTGTGCCCTCAAAAGGATCTCAGAGACCCATGTCTCAGACTCTGTTATTCATGGAGAGTTTaGTTCTCAAGTTTTACCATC | + |
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Preference number: 2 (lower is better) Translates to: ALGVCPQKDLRDPCLRLCYSWRV*FSSFTI Trigger: GATGGTAAAACTTGAGAAGCAAACTCTCCATGAATA...ACAGAGTCTGAGACATGGGTCTCTGAGATCCTTTTGAGGGCACACCCCTAATGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR CCA 90 bp | GTGGCAGACTGCTTGCCTAGAATAGGGGTTTCAATCACCATAATAATTTTAAAAAGCAGGAGGATGAGTTaGAGGTTGGTCGGGATTGCA | + |
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Preference number: 2 (lower is better) Translates to: VADCLPRIGVSITIIILKSRRMS*RLVGIA Trigger: TGCAATCCCGACCAACCTCCAACTCATCCTCCTGCT...TTTTAAAATTATTATGGTGATTGAAACCCCTATTCTAGGCAAGCAGTCTGCCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR CCA 90 bp | GTGGCAGACTGCTTGCCTAGAATAGGGGTTTCAATCACCATAATAATTTTAAAAATAAGCACCTGGAGATaGAGCACAACCCGAAGGGTC | + |
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Preference number: 2 (lower is better) Translates to: VADCLPRIGVSITIIILKISTWR*STTRRV Trigger: GACCCTTCGGGTTGTGCTCCATCTCCAGGTGCTTAT...TTTTAAAATTATTATGGTGATTGAAACCCCTATTCTAGGCAAGCAGTCTGCCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR CCA 90 bp | CACGCAGCACTCATGCTTTACAGCAAGCAGTCTTCCTTTCTATCCTGGAATTTTACTGTGAAACAGGAATaGCTTTCTTCTCATCAAGCA | + |
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Preference number: 2 (lower is better) Translates to: HAALMLYSKQSSFLSWNFTVKQE*LSSHQA Trigger: TGCTTGATGAGAAGAAAGCCATTCCTGTTTCACAGT...AAAATTCCAGGATAGAAAGGAAGACTGCTTGCTGTAAAGCATGAGTGCTGCGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR CCA 90 bp | TTGCTTCTCAAGTTTTACCATCATAAGCACCTGGAGATGGAGCACAACCCGAAGAGTCAAAGTAAAAACTaGCCTGGCACATTTTTAATC | + |
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Preference number: 2 (lower is better) Translates to: LLLKFYHHKHLEMEHNPKSQSKN*PGTFLI Trigger: GATTAAAAATGTGCCAGGCCAGTTTTTACTTTGACT...CTTCGGGTTGTGCTCCATCTCCAGGTGCTTATGATGGTAAAACTTGAGAAGCAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR GCA 90 bp | GTACATGCATGGAAGCTGGAACTTTACAAAGAAAGAGAAAAACATGGTAAGGATGAACTTTCACTAGAGTaGTTAGAATGTTCAGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: VHAWKLELYKEREKHGKDELSLE*LECSGR Trigger: CCTCCCTGAACATTCTAAGCACTCTAGTGAAAGTTC...ATCCTTACCATGTTTTTCTCTTTCTTTGTAAAGTTCCAGCTTCCATGCATGTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR CCA 90 bp | TACATGCATGGAAGCTGGAACTTTACAAAGAAAGAGAAAAACATGGTAAGGATAATGGACCTCAGTTCTTaGGCCCCCTTTATATATAAG | + |
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Preference number: 2 (lower is better) Translates to: YMHGSWNFTKKEKNMVRIMDLSS*APFIYK Trigger: CTTATATATAAAGGGGGCCCAAGAACTGAGGTCCAT...TATCCTTACCATGTTTTTCTCTTTCTTTGTAAAGTTCCAGCTTCCATGCATGTA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR CCA 90 bp | GTGGCAGACTGCTTGCCTAGAATAGGGGTTTCAATCACCATAATAATTTTAAAATACGCTTATGCAGGCTaGAGACAGAACTATTTTCTA | + |
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Preference number: 2 (lower is better) Translates to: VADCLPRIGVSITIIILKYAYAG*RQNYFL Trigger: TAGAAAATAGTTCTGTCTCCAGCCTGCATAAGCGTA...TTTTAAAATTATTATGGTGATTGAAACCCCTATTCTAGGCAAGCAGTCTGCCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR GCA 72 bp | CTAGAGCAGGAGGATGAGTTGGAGGTTGGTCGGGATTaGACACTGAGTCTGAGGCATCCGAGGCTACCACAG | + |
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Preference number: 3 (lower is better) Translates to: LEQEDELEVGRD*TLSLRHPRLPQ Trigger: CTGTGGTAGCCTCGGATGCCTCAGACTCAGTGTGCAATCCCGACCAACCTCCAACTCATCCTCCTGCTCTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR CAA 90 bp | CAACCCGAAGGGTCATTGAATCTTTTCAGGAGCGCCTTAGGAAAGGACACTCTGCTCGCCCTGGCTGAGTaGGATGCCGTCCAGCAGAAG | + |
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Preference number: 3 (lower is better) Translates to: QPEGSLNLFRSALGKDTLLALAE*DAVQQK Trigger: CTTCTGCTGGACGGCATCCAACTCAGCCAGGGCGAG...CAGAGTGTCCTTTCCTAAGGCGCTCCTGAAAAGATTCAATGACCCTTCGGGTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR TCA 72 bp | GGCAGGCAGATCTTTGAGTCAACCTTGCCTACAGAGTaGGTTCCAGGAAAGCCAGGGCTGCACAGAGAAACC | + |
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Preference number: 3 (lower is better) Translates to: GRQIFESTLPTE*VPGKPGLHRET Trigger: GGTTTCTCTGTGCAGCCCTGGCTTTCCTGGAACTCACTCTGTAGGCAAGGTTGACTCAAAGATCTGCCTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR TCA 72 bp | GTCCCAGCACTCAGGAGACAGAGGCAGGCAGATCTTTaGGTCAACCTTGCCTACAGAGTGAGTTCCAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: VPALRRQRQADL*VNLAYRVSSRK Trigger: TTTCCTGGAACTCACTCTGTAGGCAAGGTTGACTCAAAGATCTGCCTGCCTCTGTCTCCTGAGTGCTGGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR TCA 72 bp | TTTAATCCCAGGACCCAAGAGGCTAGAGCAGGAGGATaGGTTGGAGGTTGGTCGGGATTGCACACTGAGTCT | + |
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Preference number: 3 (lower is better) Translates to: FNPRTQEARAGG*VGGWSGLHTES Trigger: AGACTCAGTGTGCAATCCCGACCAACCTCCAACTCATCCTCCTGCTCTAGCCTCTTGGGTCCTGGGATTAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR GCA 72 bp | TGCACCCATGTACGTGCACAAGCACACGTCACTGCATaGTCGTGGAAGTCAGAGGACAACTTTCAGCAGTTG | + |
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Preference number: 3 (lower is better) Translates to: CTHVRAQAHVTA*SWKSEDNFQQL Trigger: CAACTGCTGAAAGTTGTCCTCTGACTTCCACGAGCATGCAGTGACGTGTGCTTGTGCACGTACATGGGTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR GCA 72 bp | TGTGTGCACCCATGTACGTGCACAAGCACACGTCACTaGATGCTCGTGGAAGTCAGAGGACAACTTTCAGCA | + |
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Preference number: 3 (lower is better) Translates to: CVHPCTCTSTRH*MLVEVRGQLSA Trigger: TGCTGAAAGTTGTCCTCTGACTTCCACGAGCATGCAGTGACGTGTGCTTGTGCACGTACATGGGTGCACACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR-3UTR CAA 90 bp | GCATTAGGGGTGTGCCCTCAAAAGGATCTCAGAGACCCATGTCTCAGACTCTGTGCTCTGGTGGGGGTTTaGTTCTTTCTTCTTGGTTCT | + |
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Preference number: 3 (lower is better) Translates to: ALGVCPQKDLRDPCLRLCALVGV*FFLLGS Trigger: AGAACCAAGAAGAAAGAACAAAACCCCCACCAGAGC...ACAGAGTCTGAGACATGGGTCTCTGAGATCCTTTTGAGGGCACACCCCTAATGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR GCA 72 bp | CATGGTGGCTCAGAACCATCTATTCTAGAAATCCAATaGCCTCTTCTGGCCACCTTGGGCACTAGGAATGCA | + |
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Preference number: 3 (lower is better) Translates to: HGGSEPSILEIQ*PLLATLGTRNA Trigger: TGCATTCCTAGTGCCCAAGGTGGCCAGAAGAGGGCATTGGATTTCTAGAATAGATGGTTCTGAGCCACCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR GCA 72 bp | CCCAAGGCCCAGGTGTTAAAAGCTTGTTTCCTTGACTaGGGCACTACTGGAAACTGTGGAAACTTTAGGCCA | + |
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Preference number: 3 (lower is better) Translates to: PKAQVLKACFLD*GTTGNCGNFRP Trigger: TGGCCTAAAGTTTCCACAGTTTCCAGTAGTGCCGCAGTCAAGGAAACAAGCTTTTAACACCTGGGCCTTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| 3UTR CCA 72 bp | CATGTACGTGCACAAGCACACGTCACTGCATGCTCGTaGAAGTCAGAGGACAACTTTCAGCAGTTGTTCTCT | + |
|
Preference number: 3 (lower is better) Translates to: HVRAQAHVTACS*KSEDNFQQLFS Trigger: AGAGAACAACTGCTGAAAGTTGTCCTCTGACTTCCACGAGCATGCAGTGACGTGTGCTTGTGCACGTACATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR CCA 72 bp | CCTCATGCTACAGTGTGCTACCTCACTACAGGCCTGTaGCCACAAGGCCAACCAATCTCAAAGTTAAACTTT | + |
|
Preference number: 3 (lower is better) Translates to: PHATVCYLTTGL*PQGQPISKLNF Trigger: AAAGTTTAACTTTGAGATTGGTTGGCCTTGTGGCCACAGGCCTGTAGTGAGGTAGCACACTGTAGCATGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR-3UTR CAA 90 bp | CAACCCGAAGGGTCATTGAATCTTTTCAGGAGCGCCTTAGGAAAGGACACTCTGGGCAAAATCAGAATGTaGCAGAAGATCCAGAACACA | + |
|
Preference number: 3 (lower is better) Translates to: QPEGSLNLFRSALGKDTLGKIRM*QKIQNT Trigger: TGTGTTCTGGATCTTCTGCAACATTCTGATTTTGCC...CAGAGTGTCCTTTCCTAAGGCGCTCCTGAAAAGATTCAATGACCCTTCGGGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR TCA 72 bp | AGACAGTGCAGTGTAAAAAGGTACAGCTGCCAAGACTaGCAACCCAAGTTTGATCCTAGGGCCAGCATAATG | + |
|
Preference number: 3 (lower is better) Translates to: RQCSVKRYSCQD*QPKFDPRASIM Trigger: CATTATGCTGGCCCTAGGATCAAACTTGGGTTGTCAGTCTTGGCAGCTGTACCTTTTTACACTGCACTGTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR GCA 72 bp | TGTCTATATAGCAACACGACAAGCTCTTTGTGGATCTaGAGAGATCTGCTCCACAGGGGTGTGCTACTACTT | + |
|
Preference number: 3 (lower is better) Translates to: CLYSNTTSSLWI*RDLLHRGVLLL Trigger: AAGTAGTAGCACACCCCTGTGGAGCAGATCTCTGCAGATCCACAAAGAGCTTGTCGTGTTGCTATATAGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR GCA 72 bp | ACAATAACGTCAACAGTTTGTTTTATCGTGTCCTCATaGTACAGTGTGCTACCTCACTACAGGCCTGTGGCC | + |
|
Preference number: 3 (lower is better) Translates to: TITSTVCFIVSS*YSVLPHYRPVA Trigger: GGCCACAGGCCTGTAGTGAGGTAGCACACTGTAGCATGAGGACACGATAAAACAAACTGTTGACGTTATTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR-3UTR CAA 90 bp | GCATTAGGGGTGTGCCCTCAAAAGGATCTCAGAGACCCATGTCTCAGACTCTGTATTGCTACTGCATCTTaGAATGTTAGAAAACCCTCA | + |
|
Preference number: 3 (lower is better) Translates to: ALGVCPQKDLRDPCLRLCIATAS*NVRKPS Trigger: TGAGGGTTTTCTAACATTCAAAGATGCAGTAGCAAT...ACAGAGTCTGAGACATGGGTCTCTGAGATCCTTTTGAGGGCACACCCCTAATGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR CCA 72 bp | TCTATTTGTCTATATAGCAACACGACAAGCTCTTTGTaGATCTGCAGAGATCTGCTCCACAGGGGTGTGCTA | + |
|
Preference number: 3 (lower is better) Translates to: SICLYSNTTSSL*ICRDLLHRGVL Trigger: TAGCACACCCCTGTGGAGCAGATCTCTGCAGATCCACAAAGAGCTTGTCGTGTTGCTATATAGACAAATAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR-3UTR CAA 90 bp | TTGACCACTTTTCTCACATACAGTAAGCAACAGAAAAGCCACCTATTCTTCTTCCAACCCGAAGGGTCATaGAATCTTTTCAGGAGCGCC | + |
|
Preference number: 3 (lower is better) Translates to: LTTFLTYSKQQKSHLFFFQPEGS*NLFRSA Trigger: GGCGCTCCTGAAAAGATTCAATGACCCTTCGGGTTG...GAAGAAGAATAGGTGGCTTTTCTGTTGCTTACTGTATGTGAGAAAAGTGGTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR TCA 72 bp | TGTGAAACAGGAATGGCTTTCTTCTCATCAAGCAAATaGGCCCTAAGACTTCTAAAGGATGGACCATGGACC | + |
|
Preference number: 3 (lower is better) Translates to: CETGMAFFSSSK*ALRLLKDGPWT Trigger: GGTCCATGGTCCATCCTTTAGAAGTCTTAGGGCTCATTTGCTTGATGAGAAGAAAGCCATTCCTGTTTCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR GCA 72 bp | AGGATCTCAGAGACCCATGTCTCAGACTCTGTCTTCTaGACCCACAATAACGTCAACAGTTTGTTTTATCGT | + |
|
Preference number: 3 (lower is better) Translates to: RISETHVSDSVF*THNNVNSLFYR Trigger: ACGATAAAACAAACTGTTGACGTTATTGTGGGTGCAGAAGACAGAGTCTGAGACATGGGTCTCTGAGATCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR CCA 72 bp | AAGACTTCTAAAGGATGGACCATGGACCTCAGTTCTTaGGCCCCCTTTATATATAAGGCCAACACTGGTTTT | + |
|
Preference number: 3 (lower is better) Translates to: KTSKGWTMDLSS*APFIYKANTGF Trigger: AAAACCAGTGTTGGCCTTATATATAAAGGGGGCCCAAGAACTGAGGTCCATGGTCCATCCTTTAGAAGTCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR CCA 72 bp | TGCTTCTCAAGTTTTACCATCATAAGCACCTGGAGATaGAGCACAACCCGAAGGGTCATTGAATCTTTTCAG | + |
|
Preference number: 3 (lower is better) Translates to: CFSSFTIISTWR*STTRRVIESFQ Trigger: CTGAAAAGATTCAATGACCCTTCGGGTTGTGCTCCATCTCCAGGTGCTTATGATGGTAAAACTTGAGAAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR CCA 72 bp | AGAGTTTGCTTCTCAAGTTTTACCATCATAAGCACCTaGAGATGGAGCACAACCCGAAGGGTCATTGAATCT | + |
|
Preference number: 3 (lower is better) Translates to: RVCFSSFTIIST*RWSTTRRVIES Trigger: AGATTCAATGACCCTTCGGGTTGTGCTCCATCTCCAGGTGCTTATGATGGTAAAACTTGAGAAGCAAACTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR TCA 72 bp | TTTCAGCATCTTCTAGCTTCACCGGCTTCTCAACTGTaGAACAGGAATGGCTTTCTTCTCATCAAGCAAATG | + |
|
Preference number: 3 (lower is better) Translates to: FQHLLASPASQL*NRNGFLLIKQM Trigger: CATTTGCTTGATGAGAAGAAAGCCATTCCTGTTTCACAGTTGAGAAGCCGGTGAAGCTAGAAGATGCTGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR TCA 72 bp | TACTTGTCTAATTCTAAGTTACTATGCTATTGTAGCTaGCCTGCCTTCTGTGATCCTCTGAGGCAGAGACTG | + |
|
Preference number: 3 (lower is better) Translates to: YLSNSKLLCYCS*PAFCDPLRQRL Trigger: CAGTCTCTGCCTCAGAGGATCACAGAAGGCAGGTCAGCTACAATAGCATAGTAACTTAGAATTAGACAAGTA 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR TCA 72 bp | GTTAATTCTAGTACTTGGGAGGTAGACTCAAGAGGCTaGGTTCAAGGCCAGCCTCTGTTACATAACAAGTTT | + |
|
Preference number: 3 (lower is better) Translates to: VNSSTWEVDSRG*VQGQPLLHNKF Trigger: AAACTTGTTATGTAACAGAGGCTGGCCTTGAACTCAGCCTCTTGAGTCTACCTCCCAAGTACTAGAATTAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR CCA 72 bp | AGGATAAAGTCTGGTTACTATCTAAGAGCAATTAACTaGGGACACTTGGGCAGAGTTCTCATTGCAGCTTTG | + |
|
Preference number: 3 (lower is better) Translates to: RIKSGYYLRAIN*GHLGRVLIAAL Trigger: CAAAGCTGCAATGAGAACTCTGCCCAAGTGTCCCCAGTTAATTGCTCTTAGATAGTAACCAGACTTTATCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR-3UTR CAA 90 bp | TACATGCATGGAAGCTGGAACTTTACAAAGAAAGAGAAAAACATGGTAAGGATAGAGGCAGGCAGATCTTaGAGTCAACCTTGCCTACAG | + |
|
Preference number: 3 (lower is better) Translates to: YMHGSWNFTKKEKNMVRIEAGRS*SQPCLQ Trigger: CTGTAGGCAAGGTTGACTCAAAGATCTGCCTGCCTC...TATCCTTACCATGTTTTTCTCTTTCTTTGTAAAGTTCCAGCTTCCATGCATGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR TCA 72 bp | AAACATCCATCACTTGTCTCAGCTCTACAGGGTCCCTaGAGGTTTAAAACCATAACTAAGTTATCAGTGAAG | + |
|
Preference number: 3 (lower is better) Translates to: KHPSLVSALQGP*RFKTITKLSVK Trigger: CTTCACTGATAACTTAGTTATGGTTTTAAACCTTCAGGGACCCTGTAGAGCTGAGACAAGTGATGGATGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR GCA 72 bp | TGGAGAAACATTCTTCTTAATCTAATCATGACTGCTTaGCTGTCAGTCAGTCTGTCCTACACAGTTAATGCT | + |
|
Preference number: 3 (lower is better) Translates to: WRNILLNLIMTA*LSVSLSYTVNA Trigger: AGCATTAACTGTGTAGGACAGACTGACTGACAGGCAAGCAGTCATGATTAGATTAAGAAGAATGTTTCTCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR GCA 72 bp | TCACTGTGTTTACTTCAAGTGATAAGTAGAAAGACCTaGTCCTCACAGCCTCATTTCTGTAATTCCTCAAAT | + |
|
Preference number: 3 (lower is better) Translates to: SLCLLQVISRKT*SSQPHFCNSSN Trigger: ATTTGAGGAATTACAGAAATGAGGCTGTGAGGAGCAGGTCTTTCTACTTATCACTTGAAGTAAACACAGTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR TCA 72 bp | CTCTGTCCTCAGTACTTATATATCTTCCAGAATACATaGTCACATGTTACAAGTTCATCACAAGTTCACACA | + |
|
Preference number: 3 (lower is better) Translates to: LCPQYLYIFQNT*SHVTSSSQVHT Trigger: TGTGTGAACTTGTGATGAACTTGTAACATGTGATCATGTATTCTGGAAGATATATAAGTACTGAGGACAGAG 36% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR GCA 72 bp | CAACTTTCAGCAGTTGTTCTCTTAGCCCTAAAATCTTaGTTTAGAAGTAACAATCAGAAAGCCAGTTATAGT | + |
|
Preference number: 3 (lower is better) Translates to: QLSAVVLLALKS*FRSNNQKASYS Trigger: ACTATAACTGGCTTTCTGATTGTTACTTCTAAAGCAAGATTTTAGGGCTAAGAGAACAACTGCTGAAAGTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR TCA 90 bp | GTGTGTGCACCCATGTACGTGCACAAGCACACGTCACTGCATGCTCGTGGAAGTGGGAGCGCCCTTCCGTaGCGAAGCGCGCGGCGTCCG | + |
|
Preference number: 4 (lower is better) Translates to: VCAPMYVHKHTSLHARGSGSALP*RSARRP Trigger: CGGACGCCGCGCGCTTCGTCACGGAAGGGCGCTCCC...ACTTCCACGAGCATGCAGTGACGTGTGCTTGTGCACGTACATGGGTGCACACAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR TCA 90 bp | TTCAGAGGCAAGAAGAGTGCAGTGAGCTTGAGGCCAGCCTGTGCTGTAGAATGGCGGCTGACAGCAAGATaGACTGTGGCAGGAACGCCG | + |
|
Preference number: 4 (lower is better) Translates to: FRGKKSAVSLRPACAVEWRLTAR*TVAGTP Trigger: CGGCGTTCCTGCCACAGTTCATCTTGCTGTCAGCCG...CCATTCTACAGCACAGGCTGGCCTCAAGCTCACTGCACTCTTCTTGCCTCTGAA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR CCA 90 bp | CCCAAGAGGCTAGAGCAGGAGGATGAGTTGGAGGTTGGTCGGGATTGCACACTGAGGCATCCTCACCAGTaGCATCACCAGAGGCAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: PKRLEQEDELEVGRDCTLRHPHQ*HHQRQK Trigger: CTTCTGCCTCTGGTGATGCCACTGGTGAGGATGCCT...CAGTGTGCAATCCCGACCAACCTCCAACTCATCCTCCTGCTCTAGCCTCTTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR TCA 90 bp | GTGTGTGCACCCATGTACGTGCACAAGCACACGTCACTGCATGCTCGTGGAAGTTCAGGGCAACAAACGTaGGCCCTGCAACTGCTACGA | + |
|
Preference number: 4 (lower is better) Translates to: VCAPMYVHKHTSLHARGSSGQQT*ALQLLR Trigger: TCGTAGCAGTTGCAGGGCTCACGTTTGTTGCCCTGA...ACTTCCACGAGCATGCAGTGACGTGTGCTTGTGCACGTACATGGGTGCACACAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR GCA 90 bp | CCCAAGAGGCTAGAGCAGGAGGATGAGTTGGAGGTTGGTCGGGATTGCACACTGTACGAAAAGCAGCACTaGCCAGCTACACAGCCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: PKRLEQEDELEVGRDCTLYEKQH*PATQPP Trigger: AGGAGGCTGTGTAGCTGGGCAGTGCTGCTTTTCGTA...CAGTGTGCAATCCCGACCAACCTCCAACTCATCCTCCTGCTCTAGCCTCTTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR CAA 72 bp | GTCTTTAAGGAAAAGCTAAAGCTCGCCCTGGCTGAGTaGGATGCCGTCCAGCAGAAGGCGGAGCAGAGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: VFKEKLKLALAE*DAVQQKAEQSE Trigger: TTCACTCTGCTCCGCCTTCTGCTGGACGGCATCCAACTCAGCCAGGGCGAGCTTTAGCTTTTCCTTAAAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR TCA 90 bp | TTCTATTGGAACAAAGGAACTTTCACTAGAGTGCTTAGAATGTTCAGGGAGGAGGGTAGACGTTGGGGGTaGGGAGCCAGCTCAGGAGCG | + |
|
Preference number: 4 (lower is better) Translates to: FYWNKGTFTRVLRMFREEGRRWG*GASSGA Trigger: CGCTCCTGAGCTGGCTCCTCACCCCCAACGTCTACC...CTCCTCCCTGAACATTCTAAGCACTCTAGTGAAAGTTCCTTTGTTCCAATAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR TCA 90 bp | TTATTCCTCTACTGTTCAAAAATATTTCAGCATCTTCTAGCTTCACCGGCTTCTGGCGCCCCAGCCCCTTaGGCAGCAGCAGGCGGTACA | + |
|
Preference number: 4 (lower is better) Translates to: LFLYCSKIFQHLLASPASGAPAP*AAAGGT Trigger: TGTACCGCCTGCTGCTGCTCAAGGGGCTGGGGCGCC...AGAAGCCGGTGAAGCTAGAAGATGCTGAAATATTTTTGAACAGTAGAGGAATAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR CCA 90 bp | TTATTCCTCTACTGTTCAAAAATATTTCAGCATCTTCTAGCTTCACCGGCTTCTCCAGGGAGGCGACGATaGAGTCCGCGTTGCCCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: LFLYCSKIFQHLLASPASPGRRR*SPRCPG Trigger: GCCGGGGCAACGCGGACTCCATCGTCGCCTCCCTGG...AGAAGCCGGTGAAGCTAGAAGATGCTGAAATATTTTTGAACAGTAGAGGAATAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR TCA 90 bp | TTCTATTGGAACAAAGGAACTTTCACTAGAGTGCTTAGAATGTTCAGGGAGGAGAGCGCGCGGCGTCCGTaGACACGTGGTAGTCTATGT | + |
|
Preference number: 4 (lower is better) Translates to: FYWNKGTFTRVLRMFREESARRP*TRGSLC Trigger: ACATAGACTACCACGTGTTCACGGACGCCGCGCGCT...CTCCTCCCTGAACATTCTAAGCACTCTAGTGAAAGTTCCTTTGTTCCAATAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR TCA 90 bp | GCATTAGGGGTGTGCCCTCAAAAGGATCTCAGAGACCCATGTCTCAGACTCTGTTACCAAAGAAAGTACTaGGAGGTGCAGACTTTGTTA | + |
|
Preference number: 4 (lower is better) Translates to: ALGVCPQKDLRDPCLRLCYQRKY*EVQTLL Trigger: TAACAAAGTCTGCACCTCTCAGTACTTTCTTTGGTA...ACAGAGTCTGAGACATGGGTCTCTGAGATCCTTTTGAGGGCACACCCCTAATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR CAA 72 bp | TCTATTCTAGAAATCCAATGCCCTCTTCTGGCCACCTaGGGCACTAGGAATGCACATGGTGCACAGACATAT | + |
|
Preference number: 4 (lower is better) Translates to: SILEIQCPLLAT*GTRNAHGAQTY Trigger: ATATGTCTGTGCACCATGTGCATTCCTAGTGCCCAAGGTGGCCAGAAGAGGGCATTGGATTTCTAGAATAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR CAA 72 bp | TCATCTATTTGTCTATATAGCAACACGACAAGCTCTTaGTGGATCTGCAGAGATCTGCTCCACAGGGGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: SSICLYSNTTSS*WICRDLLHRGV Trigger: CACACCCCTGTGGAGCAGATCTCTGCAGATCCACAAAGAGCTTGTCGTGTTGCTATATAGACAAATAGATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR CAA 72 bp | GACTCTGTCTTCTGCACCCACAATAACGTCAACAGTTaGTTTTATCGTGTCCTCATGCTACAGTGTGCTACC | + |
|
Preference number: 4 (lower is better) Translates to: DSVFCTHNNVNS*FYRVLMLQCAT Trigger: GGTAGCACACTGTAGCATGAGGACACGATAAAACAAACTGTTGACGTTATTGTGGGTGCAGAAGACAGAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR CAA 72 bp | ATTAAGTTAATAGCCTTTGTTCTATCGCAGCAGGAATaGCTGCTGGGCTCTAACTTTCAGCCTGCTAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: IKLIAFVLSQQE*LLGSNFQPASW Trigger: CCAACTAGCAGGCTGAAAGTTAGAGCCCAGCAGCAATTCCTGCTGCGATAGAACAAAGGCTATTAACTTAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR TCA 90 bp | TACATGCATGGAAGCTGGAACTTTACAAAGAAAGAGAAAAACATGGTAAGGATACCATGGGCAAAGGGTTaGGAAGCCAGAAGACGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: YMHGSWNFTKKEKNMVRIPWAKG*EARRRS Trigger: ACTGCGTCTTCTGGCTTCTCAACCCTTTGCCCATGG...TATCCTTACCATGTTTTTCTCTTTCTTTGTAAAGTTCCAGCTTCCATGCATGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR CAA 72 bp | TCTGGTTACTATCTAAGAGCAATTAACTGGGGACACTaGGGCAGAGTTCTCATTGCAGCTTTGACTATCAAA | + |
|
Preference number: 4 (lower is better) Translates to: SGYYLRAINWGH*GRVLIAALTIK Trigger: TTTGATAGTCAAAGCTGCAATGAGAACTCTGCCCAAGTGTCCCCAGTTAATTGCTCTTAGATAGTAACCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| 3UTR CAA 72 bp | CAGTTAGGAGTAATTATCTGGCTAAACATCCATCACTaGTCTCAGCTCTACAGGGTCCCTGAAGGTTTAAAA | + |
|
Preference number: 4 (lower is better) Translates to: QLGVIIWLNIHH*SQLYRVPEGLK Trigger: TTTTAAACCTTCAGGGACCCTGTAGAGCTGAGACAAGTGATGGATGTTTAGCCAGATAATTACTCCTAACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR TCA 90 bp | TTCTATTGGAACAAAGGAACTTTCACTAGAGTGCTTAGAATGTTCAGGGAGGAGACAAAAATGGACGTATaGAGGAAACAGCAGAAGACA | + |
|
Preference number: 4 (lower is better) Translates to: FYWNKGTFTRVLRMFREETKMDV*RKQQKT Trigger: TGTCTTCTGCTGTTTCCTTCATACGTCCATTTTTGT...CTCCTCCCTGAACATTCTAAGCACTCTAGTGAAAGTTCCTTTGTTCCAATAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR TCA 90 bp | GTGGCAGACTGCTTGCCTAGAATAGGGGTTTCAATCACCATAATAATTTTAAAAATAAGGCCTGTCCTATaGACCAGAACAGTAAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: VADCLPRIGVSITIIILKIRPVL*TRTVRG Trigger: TCCTCTTACTGTTCTGGTTCATAGGACAGGCCTTAT...TTTTAAAATTATTATGGTGATTGAAACCCCTATTCTAGGCAAGCAGTCTGCCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR TCA 90 bp | GTGGCAGACTGCTTGCCTAGAATAGGGGTTTCAATCACCATAATAATTTTAAAATCAGTATGGAACAGTTaGTCAGAAGGAAGAACAAAC | + |
|
Preference number: 4 (lower is better) Translates to: VADCLPRIGVSITIIILKSVWNS*SEGRTN Trigger: GTTTGTTCTTCCTTCTGATCAACTGTTCCATACTGA...TTTTAAAATTATTATGGTGATTGAAACCCCTATTCTAGGCAAGCAGTCTGCCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS TCA 90 bp | TGGAGTCCGCGTTGCCCCGGCTGGACACCGCCATGGGCAAAGGGTTaGGAAGCCAGAAGACGCAGTAGCCACAGGCTTGGCGGCGCCCCA | + |
|
Preference number: 5 (lower is better) Translates to: WSPRCPGWTPPWAKG*EARRRSSHRLGGAP Trigger: TGGGGCGCCGCCAAGCCTGTGGCTACTGCGTCTTCTGGCTTCTCAACCCTTTGCCCATGGCGGTGTCCAGCCGGGGCAACGCGGACTCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS GCA 90 bp | CTCCTCAGGAAGTCGTACAAACGAGCCTGGAAAGAGAACCGGGCTTaGCGGAGACGCTCGTCATCGTCGCGCTCGGGCCGCAGATGGAGC | + |
|
Preference number: 5 (lower is better) Translates to: LLRKSYKRAWKENRA*RRRSSSSRSGRRWS Trigger: GCTCCATCTGCGGCCCGAGCGCGACGATGACGAGCGTCTCCGGCAAGCCCGGTTCTCTTTCCAGGCTCGTTTGTACGACTTCCTGAGGAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR CAA 90 bp | CTGAGTGTGGTTACACACTCCTTTAGTCCCAGCACTCAGGAGACAGAGGCAGGCCGGCGCCCCAGCCCCTaGAGCAGCAGCAGGCGGTAC | + |
|
Preference number: 5 (lower is better) Translates to: LSVVTHSFSPSTQETEAGRRPSP*SSSRRY Trigger: GTACCGCCTGCTGCTGCTCAAGGGGCTGGGGCGCCG...GCCTGCCTCTGTCTCCTGAGTGCTGGGACTAAAGGAGTGTGTAACCACACTCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS GCA 90 bp | CAGGGCAACAAACGTGAGCCCTGCAACTGCTACGAAAAGCAGCACTaGCCAGCTACACAGCCTCCTCAGGAAGTCGTACAAACGAGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: QGNKREPCNCYEKQH*PATQPPQEVVQTSL Trigger: CAGGCTCGTTTGTACGACTTCCTGAGGAGGCTGTGTAGCTGGGCAGTGCTGCTTTTCGTAGCAGTTGCAGGGCTCACGTTTGTTGCCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
||
| CDS-3UTR CAA 90 bp | TTCAGAGGCAAGAAGAGTGCAGTGAGCTTGAGGCCAGCCTGTGCTGTAGAATGGGCCATGGGCAAAGGGTaGAGAAGCCAGAAGACGCAG | + |
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Preference number: 5 (lower is better) Translates to: FRGKKSAVSLRPACAVEWAMGKG*RSQKTQ Trigger: CTGCGTCTTCTGGCTTCTCAACCCTTTGCCCATGGC...CCATTCTACAGCACAGGCTGGCCTCAAGCTCACTGCACTCTTCTTGCCTCTGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS TCA 90 bp | GAAACAGCAGAAGACAAGGTCTCTGTAGTAGGCGAAAGATGCGGCTaGCAGCAAGATGAACTGTGGCAGGAACGCCGCAATCCCCAGAGT | + |
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Preference number: 5 (lower is better) Translates to: ETAEDKVSVVGERCG*QQDELWQERRNPQS Trigger: ACTCTGGGGATTGCGGCGTTCCTGCCACAGTTCATCTTGCTGTCAGCCGCATCTTTCGCCTACTACAGAGACCTTGTCTTCTGCTGTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS TCA 90 bp | CCCAACCGTACTTATAGTAAAAACCGAAGCTCAGGGCAACAAACGTaGGCCCTGCAACTGCTACGAAAAGCAGCACTGCCCAGCTACACA | + |
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Preference number: 5 (lower is better) Translates to: PNRTYSKNRSSGQQT*ALQLLRKAALPSYT Trigger: TGTGTAGCTGGGCAGTGCTGCTTTTCGTAGCAGTTGCAGGGCTCACGTTTGTTGCCCTGAGCTTCGGTTTTTACTATAAGTACGGTTGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS TCA 90 bp | GAAACTCTAGAACATATGCAGGAGCCAGCCATAAGGCCTGTCCTATaGACCAGAACAGTAAGAGGACTACGGCTCTTTTCCAAGGCATCC | + |
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Preference number: 5 (lower is better) Translates to: ETLEHMQEPAIRPVL*TRTVRGLRLFSKAS Trigger: GGATGCCTTGGAAAAGAGCCGTAGTCCTCTTACTGTTCTGGTTCATAGGACAGGCCTTATGGCTGGCTCCTGCATATGTTCTAGAGTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS TCA 90 bp | AAGAACAAACCGGCTAACCAAATAAACAGGAAGGTGTTCTTTCCTTaGAACTCTAGAACATATGCAGGAGCCAGCCATAAGGCCTGTCCT | + |
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Preference number: 5 (lower is better) Translates to: KNKPANQINRKVFFP*NSRTYAGASHKACP Trigger: AGGACAGGCCTTATGGCTGGCTCCTGCATATGTTCTAGAGTTTCAAGGAAAGAACACCTTCCTGTTTATTTGGTTAGCCGGTTTGTTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS-3UTR CAA 90 bp | TTCTATTGGAACAAAGGAACTTTCACTAGAGTGCTTAGAATGTTCAGGGAGGAGCTGATGAAGAGAAACTaGCCGAAGAGTTCGCTGAGG | + |
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Preference number: 5 (lower is better) Translates to: FYWNKGTFTRVLRMFREELMKRN*PKSSLR Trigger: CCTCAGCGAACTCTTCGGCAAGTTTCTCTTCATCAG...CTCCTCCCTGAACATTCTAAGCACTCTAGTGAAAGTTCCTTTGTTCCAATAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS-3UTR CAA 90 bp | TTCTATTGGAACAAAGGAACTTTCACTAGAGTGCTTAGAATGTTCAGGGAGGAGATCAGTATGGAACAGTaGATCAGAAGGAAGAACAAA | + |
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Preference number: 5 (lower is better) Translates to: FYWNKGTFTRVLRMFREEISMEQ*IRRKNK Trigger: TTTGTTCTTCCTTCTGATCAACTGTTCCATACTGAT...CTCCTCCCTGAACATTCTAAGCACTCTAGTGAAAGTTCCTTTGTTCCAATAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS CAA 72 bp | GTCGAGAGAACCAGGGAGGCGACGATGGAGTCCGCGTaGCCCCGGCTGGACACCGCCATGGGCAAAGGGTTG | + |
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Preference number: 6 (lower is better) Translates to: VERTREATMESA*PRLDTAMGKGL Trigger: CAACCCTTTGCCCATGGCGGTGTCCAGCCGGGGCAACGCGGACTCCATCGTCGCCTCCCTGGTTCTCTCGAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS TCA 72 bp | CGTTGCCCCGGCTGGACACCGCCATGGGCAAAGGGTTaGGAAGCCAGAAGACGCAGTAGCCACAGGCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: RCPGWTPPWAKG*EARRRSSHRLG Trigger: GCCAAGCCTGTGGCTACTGCGTCTTCTGGCTTCTCAACCCTTTGCCCATGGCGGTGTCCAGCCGGGGCAACG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS GCA 72 bp | AAGTCGTACAAACGAGCCTGGAAAGAGAACCGGGCTTaGCGGAGACGCTCGTCATCGTCGCGCTCGGGCCGC | + |
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Preference number: 6 (lower is better) Translates to: KSYKRAWKENRA*RRRSSSSRSGR Trigger: GCGGCCCGAGCGCGACGATGACGAGCGTCTCCGGCAAGCCCGGTTCTCTTTCCAGGCTCGTTTGTACGACTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS CAA 72 bp | GAAGTCGTACAAACGAGCCTGGAAAGAGAACCGGGCTaGCCGGAGACGCTCGTCATCGTCGCGCTCGGGCCG | + |
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Preference number: 6 (lower is better) Translates to: EVVQTSLEREPG*PETLVIVALGP Trigger: CGGCCCGAGCGCGACGATGACGAGCGTCTCCGGCAAGCCCGGTTCTCTTTCCAGGCTCGTTTGTACGACTTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS CAA 90 bp | AAGTACAGGGTCGAGAGAACCAGGGAGGCGACGATGGAGTCCGCGTaGCCCCGGCTGGACACCGCCATGGGCAAAGGGTTGAGAAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: KYRVERTREATMESA*PRLDTAMGKGLRSQ Trigger: CTGGCTTCTCAACCCTTTGCCCATGGCGGTGTCCAGCCGGGGCAACGCGGACTCCATCGTCGCCTCCCTGGTTCTCTCGACCCTGTACTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS CAA 90 bp | CCTCCTCAGGAAGTCGTACAAACGAGCCTGGAAAGAGAACCGGGCTaGCCGGAGACGCTCGTCATCGTCGCGCTCGGGCCGCAGATGGAG | + |
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Preference number: 6 (lower is better) Translates to: PPQEVVQTSLEREPG*PETLVIVALGPQME Trigger: CTCCATCTGCGGCCCGAGCGCGACGATGACGAGCGTCTCCGGCAAGCCCGGTTCTCTTTCCAGGCTCGTTTGTACGACTTCCTGAGGAGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS GCA 72 bp | AAACGTGAGCCCTGCAACTGCTACGAAAAGCAGCACTaGCCAGCTACACAGCCTCCTCAGGAAGTCGTACAA | + |
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Preference number: 6 (lower is better) Translates to: KREPCNCYEKQH*PATQPPQEVVQ Trigger: TTGTACGACTTCCTGAGGAGGCTGTGTAGCTGGGCAGTGCTGCTTTTCGTAGCAGTTGCAGGGCTCACGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS TCA 72 bp | GAAGACAAGGTCTCTGTAGTAGGCGAAAGATGCGGCTaGCAGCAAGATGAACTGTGGCAGGAACGCCGCAAT | + |
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Preference number: 6 (lower is better) Translates to: EDKVSVVGERCG*QQDELWQERRN Trigger: ATTGCGGCGTTCCTGCCACAGTTCATCTTGCTGTCAGCCGCATCTTTCGCCTACTACAGAGACCTTGTCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS GCA 72 bp | GTAAAAACCGAAGCTCAGGGCAACAAACGTGAGCCCTaGAACTGCTACGAAAAGCAGCACTGCCCAGCTACA | + |
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Preference number: 6 (lower is better) Translates to: VKTEAQGNKREP*NCYEKQHCPAT Trigger: TGTAGCTGGGCAGTGCTGCTTTTCGTAGCAGTTGCAGGGCTCACGTTTGTTGCCCTGAGCTTCGGTTTTTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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| CDS TCA 72 bp | GAACATATGCAGGAGCCAGCCATAAGGCCTGTCCTATaGACCAGAACAGTAAGAGGACTACGGCTCTTTTCC | + |
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Preference number: 6 (lower is better) Translates to: EHMQEPAIRPVL*TRTVRGLRLFS Trigger: GGAAAAGAGCCGTAGTCCTCTTACTGTTCTGGTTCATAGGACAGGCCTTATGGCTGGCTCCTGCATATGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052455.4 |
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