Pregenerated sensors for PIFO (Mus musculus)
Ensembl gene IDs: ENSMUSG00000010136Ensembl transcript IDs: ENSMUST00000010280.11, ENSMUST00000066319.8
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AATGAGACCCTGTCCCTCTCTGGACACGAAATGGGCAGACAAGAGGGCCGAGGAGTTCTGGAGACTCTGTaGTCAGGACAGCACGTGAAG | + |
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Preference number: 2 (lower is better) Translates to: NETLSLSGHEMGRQEGRGVLETL*SGQHVK Trigger: CTTCACGTGCTGTCCTGACCACAGAGTCTCCAGAAC...TCCTCGGCCCTCTTGTCTGCCCATTTCGTGTCCAGAGAGGGACAGGGTCTCATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| 3UTR-3UTR CCA 90 bp | AATGAGACCCTGTCCCTCTCTGGACACGAAATGGGCAGACAAGAGGGCCGAGGATTATGTCCTCAGTTCTaGAGACTCTGTGGTCAGGAC | + |
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Preference number: 2 (lower is better) Translates to: NETLSLSGHEMGRQEGRGLCPQF*RLCGQD Trigger: GTCCTGACCACAGAGTCTCCAGAACTGAGGACATAA...TCCTCGGCCCTCTTGTCTGCCCATTTCGTGTCCAGAGAGGGACAGGGTCTCATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| 3UTR-3UTR CCA 90 bp | GTCCCTCTCTGGACACGAAATGGGCAGACAAGAGGGCCGAGGAACACAGAAATATTATGTCCTCAGTTCTaGAGACTCTGTGGTCAGGAC | + |
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Preference number: 2 (lower is better) Translates to: VPLWTRNGQTRGPRNTEILCPQF*RLCGQD Trigger: GTCCTGACCACAGAGTCTCCAGAACTGAGGACATAA...TATTTCTGTGTTCCTCGGCCCTCTTGTCTGCCCATTTCGTGTCCAGAGAGGGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR CCA 90 bp | TGTCCCTCTCTGGACACGAAATGGGCAGACAAGAGGGCCGAGGAACACAGAAATCACCCAGGGCCTGTGTaGGGCATTCCCCTAAGAGGG | + |
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Preference number: 4 (lower is better) Translates to: CPSLDTKWADKRAEEHRNHPGPV*GIPLRG Trigger: CCCTCTTAGGGGAATGCCCCACACAGGCCCTGGGTG...ATTTCTGTGTTCCTCGGCCCTCTTGTCTGCCCATTTCGTGTCCAGAGAGGGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR CCA 90 bp | GGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGCACGTGAAGCACCCAGGGCCTGTGTaGGGCATTCCCCTAAGAGGG | + |
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Preference number: 4 (lower is better) Translates to: GAIMSSVLETLWSGQHVKHPGPV*GIPLRG Trigger: CCCTCTTAGGGGAATGCCCCACACAGGCCCTGGGTG...CTTCACGTGCTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR CCA 90 bp | GTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGCACGTGAAGACAGTGCCTACGTTCCCCAGCCAGGTTaGGGGATGGTAGTGAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: VLSSGDSVVRTAREDSAYVPQPG*GMVVRK Trigger: TTTCCTCACTACCATCCCCCAACCTGGCTGGGGAAC...GTAGGCACTGTCTTCACGTGCTGTCCTGACCACAGAGTCTCCAGAACTGAGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR TCA 90 bp | AATGAGACCCTGTCCCTCTCTGGACACGAAATGGGCAGACAAGAGGGCCGAGGATCTAGACATGGAACCTaGGACCAGTCTGGAGATCCA | + |
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Preference number: 4 (lower is better) Translates to: NETLSLSGHEMGRQEGRGSRHGT*DQSGDP Trigger: TGGATCTCCAGACTGGTCTCAGGTTCCATGTCTAGA...TCCTCGGCCCTCTTGTCTGCCCATTTCGTGTCCAGAGAGGGACAGGGTCTCATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR GCA 90 bp | CTGTCCCTCTCTGGACACGAAATGGGCAGACAAGAGGGCCGAGGAACACAGAAACCAATCTGTTGCTGCTaGATAACACCCAGGGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: LSLSGHEMGRQEGRGTQKPICCC*ITPRAC Trigger: ACAGGCCCTGGGTGTTATGCAGCAGCAACAGATTGG...TTTCTGTGTTCCTCGGCCCTCTTGTCTGCCCATTTCGTGTCCAGAGAGGGACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR TCA 90 bp | GTCCCTCTCTGGACACGAAATGGGCAGACAAGAGGGCCGAGGAACACAGAAATATCACCTTCCCATGAGTaGTGTCCCGAAGAGCATGAT | + |
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Preference number: 4 (lower is better) Translates to: VPLWTRNGQTRGPRNTEISPSHE*CPEEHD Trigger: ATCATGCTCTTCGGGACATCACTCATGGGAAGGTGA...TATTTCTGTGTTCCTCGGCCCTCTTGTCTGCCCATTTCGTGTCCAGAGAGGGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010280.11 |
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| CDS-3UTR GCA 90 bp | TGTCCCTCTCTGGACACGAAATGGGCAGACAAGAGGGCCGAGGAACACAGAAATGCCACACGGCTACGATaGTTTCTAAAGTCCTTGTCT | + |
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Preference number: 4 (lower is better) Translates to: CPSLDTKWADKRAEEHRNATRLR*FLKSLS Trigger: AGACAAGGACTTTAGAAAGCATCGTAGCCGTGTGGC...ATTTCTGTGTTCCTCGGCCCTCTTGTCTGCCCATTTCGTGTCCAGAGAGGGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR CCA 90 bp | CTGTCCCTCTCTGGACACGAAATGGGCAGACAAGAGGGCCGAGGAACACAGAAACACATCCTTGCTGATTaGCTTAAACCTCACAGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: LSLSGHEMGRQEGRGTQKHILAD*LKPHSC Trigger: ACAGCTGTGAGGTTTAAGCCAATCAGCAAGGATGTG...TTTCTGTGTTCCTCGGCCCTCTTGTCTGCCCATTTCGTGTCCAGAGAGGGACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR TCA 90 bp | GGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGCACGTGAAGAGTAACTGCATTGCATaGCAACTTTCAGGGGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: GAIMSSVLETLWSGQHVKSNCIA*QLSGGL Trigger: CAAGCCCCCTGAAAGTTGTCATGCAATGCAGTTACT...CTTCACGTGCTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010280.11 |
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| CDS-3UTR CCA 90 bp | GAGGAACACAGAAATACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGGTTCCCCAGCCAGGTTaGGGGATGGTAGTGAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: EEHRNTGAIMSSVLETLWVPQPG*GMVVRK Trigger: TTTCCTCACTACCATCCCCCAACCTGGCTGGGGAAC...CCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATTTCTGTGTTCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR GCA 90 bp | GAGGAACACAGAAATACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGCCAATCTGTTGCTGCTaGATAACACCCAGGGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: EEHRNTGAIMSSVLETLWPICCC*ITPRAC Trigger: ACAGGCCCTGGGTGTTATGCAGCAGCAACAGATTGG...CCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATTTCTGTGTTCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR TCA 90 bp | AAATACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGCATCTAGACATGGAACCTaGGACCAGTCTGGAGATCCA | + |
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Preference number: 4 (lower is better) Translates to: KYRSNYVLSSGDSVVRTASRHGT*DQSGDP Trigger: TGGATCTCCAGACTGGTCTCAGGTTCCATGTCTAGA...TGCTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR CCA 90 bp | GGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGCACGTGAAGAACCTGAGACCAGTCTaGAGATCCAAATTTCATTGG | + |
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Preference number: 4 (lower is better) Translates to: GAIMSSVLETLWSGQHVKNLRPV*RSKFHW Trigger: CCAATGAAATTTGGATCTCCAGACTGGTCTCAGGTT...CTTCACGTGCTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR TCA 90 bp | ACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGCACGTGAAAGTATCAACTTTCTaGTACATCCCTGGGTATGGT | + |
|
Preference number: 4 (lower is better) Translates to: TGAIMSSVLETLWSGQHVKVSTF*YIPGYG Trigger: ACCATACCCAGGGATGTATCAGAAAGTTGATACTTT...CACGTGCTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR GCA 90 bp | AATACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGCACGTAAGAATCACCCTTTaGTGCACTCCTAAATCGAGG | + |
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Preference number: 4 (lower is better) Translates to: NTGAIMSSVLETLWSGQHVRITL*CTPKSR Trigger: CCTCGATTTAGGAGTGCAGCAAAGGGTGATTCTTAC...GTGCTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR GCA 90 bp | GAGGAACACAGAAATACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGGCCACACGGCTACGATaGTTTCTAAAGTCCTTGTCT | + |
|
Preference number: 4 (lower is better) Translates to: EEHRNTGAIMSSVLETLWATRLR*FLKSLS Trigger: AGACAAGGACTTTAGAAAGCATCGTAGCCGTGTGGC...CCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATTTCTGTGTTCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR TCA 90 bp | GGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGCACGTGAAGATGCCTCAAGAGATTTaGATAGTAACTGCATTGCAT | + |
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Preference number: 4 (lower is better) Translates to: GAIMSSVLETLWSGQHVKMPQEI*IVTALH Trigger: ATGCAATGCAGTTACTATTCAAATCTCTTGAGGCAT...CTTCACGTGCTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010280.11 |
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| CDS-3UTR TCA 90 bp | ATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGCACGTGAAGACAGTGAGTAACTTTTGGGACTaGCTTCATCTCTGGATTGTA | + |
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Preference number: 4 (lower is better) Translates to: IMSSVLETLWSGQHVKTVSNFWD*LHLWIV Trigger: TACAATCCAGAGATGAAGTCAGTCCCAAAAGTTACT...CACTGTCTTCACGTGCTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR CCA 90 bp | GAGGAACACAGAAATACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGATACATCCCTGGGTATaGTGTCACATCCTTGCTGAT | + |
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Preference number: 4 (lower is better) Translates to: EEHRNTGAIMSSVLETLWIHPWV*CHILAD Trigger: ATCAGCAAGGATGTGACACCATACCCAGGGATGTAT...CCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATTTCTGTGTTCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR CCA 90 bp | AAATACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGCAATACATCCCTGGGTATaGTGTCACATCCTTGCTGAT | + |
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Preference number: 4 (lower is better) Translates to: KYRSNYVLSSGDSVVRTAIHPWV*CHILAD Trigger: ATCAGCAAGGATGTGACACCATACCCAGGGATGTAT...TGCTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR CCA 90 bp | AGAAATACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGAACCTGAGACCAGTCTaGAGATCCAAATTTCATTGG | + |
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Preference number: 4 (lower is better) Translates to: RNTGAIMSSVLETLWSGQNLRPV*RSKFHW Trigger: CCAATGAAATTTGGATCTCCAGACTGGTCTCAGGTT...CTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR TCA 90 bp | AGAAATACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGAAAGTATCAACTTTCTaGTACATCCCTGGGTATGGT | + |
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Preference number: 4 (lower is better) Translates to: RNTGAIMSSVLETLWSGQKVSTF*YIPGYG Trigger: ACCATACCCAGGGATGTATCAGAAAGTTGATACTTT...CTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATTTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR TCA 90 bp | ACACAGAAATACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGAGTAACTTTTGGGACTaGCTTCATCTCTGGATTGTA | + |
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Preference number: 4 (lower is better) Translates to: TQKYRSNYVLSSGDSVVRSNFWD*LHLWIV Trigger: TACAATCCAGAGATGAAGTCAGTCCCAAAAGTTACT...CCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATTTCTGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR CAA 90 bp | ATGAGACCCTGTCCCTCTCTGGACACGAAATGGGCAGACAAGAGGGCCGAGGAAAACCATTCCAATCTGTaGCTGCTGCATAACACCCAG | + |
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Preference number: 5 (lower is better) Translates to: MRPCPSLDTKWADKRAEENHSNL*LLHNTQ Trigger: CTGGGTGTTATGCAGCAGCAACAGATTGGAATGGTT...TTCCTCGGCCCTCTTGTCTGCCCATTTCGTGTCCAGAGAGGGACAGGGTCTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR CAA 90 bp | ACAATGAGACCCTGTCCCTCTCTGGACACGAAATGGGCAGACAAGAGGGCCGAGTATGGTGTCACATCCTaGCTGATTGGCTTAAACCTC | + |
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Preference number: 5 (lower is better) Translates to: TMRPCPSLDTKWADKRAEYGVTS*LIGLNL Trigger: GAGGTTTAAGCCAATCAGCAAGGATGTGACACCATA...CTCGGCCCTCTTGTCTGCCCATTTCGTGTCCAGAGAGGGACAGGGTCTCATTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR CAA 90 bp | ACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGCACGTGAACCATTCCAATCTGTaGCTGCTGCATAACACCCAG | + |
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Preference number: 5 (lower is better) Translates to: TGAIMSSVLETLWSGQHVNHSNL*LLHNTQ Trigger: CTGGGTGTTATGCAGCAGCAACAGATTGGAATGGTT...CACGTGCTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR CAA 90 bp | AAATACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGCATGCTTTCTAAAGTCCTaGTCTGCGGACAGCTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: KYRSNYVLSSGDSVVRTACFLKS*SADSSA Trigger: GGCTGAGCTGTCCGCAGACAAGGACTTTAGAAAGCA...TGCTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR CAA 90 bp | ACACAGAAATACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGTGCTTTCTAAAGTCCTaGTCTGCGGACAGCTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: TQKYRSNYVLSSGDSVVRCFLKS*SADSSA Trigger: GGCTGAGCTGTCCGCAGACAAGGACTTTAGAAAGCA...CCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATTTCTGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS GCA 90 bp | CTCTGGATTGTATGTGCCAGGGCCGGGGTAAGAATCACCCTTTGCTaGACTCCTAAATCGAGGCATCAAGATATTAAATGGAGCAAAGCT | + |
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Preference number: 5 (lower is better) Translates to: LWIVCARAGVRITLC*TPKSRHQDIKWSKA Trigger: AGCTTTGCTCCATTTAATATCTTGATGCCTCGATTTAGGAGTGCAGCAAAGGGTGATTCTTACCCCGGCCCTGGCACATACAATCCAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS GCA 90 bp | CATCTCTGGATTGTATGTGCCAGGGCCGGGGTAAGAATCACCCTTTaGTGCACTCCTAAATCGAGGCATCAAGATATTAAATGGAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: HLWIVCARAGVRITL*CTPKSRHQDIKWSK Trigger: TTTGCTCCATTTAATATCTTGATGCCTCGATTTAGGAGTGCAGCAAAGGGTGATTCTTACCCCGGCCCTGGCACATACAATCCAGAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS CCA 90 bp | AACTTTCTGATACATCCCTGGGTATGGTGTCACATCCTTGCTGATTaGCTTAAACCTCACAGCTGTCCTGGCTCCAATAGCATAGCCTTT | + |
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Preference number: 5 (lower is better) Translates to: NFLIHPWVWCHILAD*LKPHSCPGSNSIAF Trigger: AAAGGCTATGCTATTGGAGCCAGGACAGCTGTGAGGTTTAAGCCAATCAGCAAGGATGTGACACCATACCCAGGGATGTATCAGAAAGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR CAA 90 bp | AGAAATACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGTATGGTGTCACATCCTaGCTGATTGGCTTAAACCTC | + |
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Preference number: 5 (lower is better) Translates to: RNTGAIMSSVLETLWSGQYGVTS*LIGLNL Trigger: GAGGTTTAAGCCAATCAGCAAGGATGTGACACCATA...CTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS-3UTR CAA 90 bp | AATACAGGAGCAATTATGTCCTCAGTTCTGGAGACTCTGTGGTCAGGACAGCACGATGCCTCAAGAGATTaGAATAGTAACTGCATTGCA | + |
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Preference number: 5 (lower is better) Translates to: NTGAIMSSVLETLWSGQHDASRD*NSNCIA Trigger: TGCAATGCAGTTACTATTCAAATCTCTTGAGGCATC...GTGCTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010280.11 |
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| CDS GCA 72 bp | GTATGTGCCAGGGCCGGGGTAAGAATCACCCTTTGCTaGACTCCTAAATCGAGGCATCAAGATATTAAATGG | + |
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Preference number: 6 (lower is better) Translates to: VCARAGVRITLC*TPKSRHQDIKW Trigger: CCATTTAATATCTTGATGCCTCGATTTAGGAGTGCAGCAAAGGGTGATTCTTACCCCGGCCCTGGCACATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS CAA 72 bp | CTTTCGATAGATTATATGCCAAACCATTCCAATCTGTaGCTGCTGCATAACACCCAGGGCCTGTGTGGGGCA | + |
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Preference number: 6 (lower is better) Translates to: LSIDYMPNHSNL*LLHNTQGLCGA Trigger: TGCCCCACACAGGCCCTGGGTGTTATGCAGCAGCAACAGATTGGAATGGTTTGGCATATAATCTATCGAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS GCA 72 bp | ATTGTATGTGCCAGGGCCGGGGTAAGAATCACCCTTTaGTGCACTCCTAAATCGAGGCATCAAGATATTAAA | + |
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Preference number: 6 (lower is better) Translates to: IVCARAGVRITL*CTPKSRHQDIK Trigger: TTTAATATCTTGATGCCTCGATTTAGGAGTGCAGCAAAGGGTGATTCTTACCCCGGCCCTGGCACATACAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS TCA 72 bp | GTGTTCCAAAGGAGTAATTATTCACCTTCCCATGAGTaGTGTCCCGAAGAGCATGATGTTCATTCCGTTGTG | + |
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Preference number: 6 (lower is better) Translates to: VFQRSNYSPSHE*CPEEHDVHSVV Trigger: CACAACGGAATGAACATCATGCTCTTCGGGACATCACTCATGGGAAGGTGAATAATTACTCCTTTGGAACAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010280.11 |
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| CDS TCA 72 bp | TCAGCCTTTAGAGTCCTTTTCTCTAGACATGGAACCTaGGACCAGTCTGGAGATCCAAATTTCATTGGCCAA | + |
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Preference number: 6 (lower is better) Translates to: SAFRVLFSRHGT*DQSGDPNFIGQ Trigger: TTGGCCAATGAAATTTGGATCTCCAGACTGGTCTCAGGTTCCATGTCTAGAGAAAAGGACTCTAAAGGCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS CCA 72 bp | ACTCAAAGTATCAACTTTCTGATACATCCCTGGGTATaGTGTCACATCCTTGCTGATTGGCTTAAACCTCAC | + |
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Preference number: 6 (lower is better) Translates to: TQSINFLIHPWV*CHILADWLKPH Trigger: GTGAGGTTTAAGCCAATCAGCAAGGATGTGACACCATACCCAGGGATGTATCAGAAAGTTGATACTTTGAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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| CDS CAA 90 bp | CACCTTCCCATGAGTGATGTCCCGAAGAGCATGATGTTCATTCCGTaGTGTGAATTCATTCTCTTTGGTCTTTTTCAGTTCTTCTTCTAC | + |
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Preference number: 6 (lower is better) Translates to: HLPMSDVPKSMMFIP*CEFILFGLFQFFFY Trigger: GTAGAAGAAGAACTGAAAAAGACCAAAGAGAATGAATTCACACAACGGAATGAACATCATGCTCTTCGGGACATCACTCATGGGAAGGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010280.11 |
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| CDS CAA 72 bp | ATGAGTGATGTCCCGAAGAGCATGATGTTCATTCCGTaGTGTGAATTCATTCTCTTTGGTCTTTTTCAGTTC | + |
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Preference number: 6 (lower is better) Translates to: MSDVPKSMMFIP*CEFILFGLFQF Trigger: GAACTGAAAAAGACCAAAGAGAATGAATTCACACAACGGAATGAACATCATGCTCTTCGGGACATCACTCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010280.11 |
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| CDS CCA 72 bp | TTTTTCACTCAAAGTATCAACTTTCTGATACATCCCTaGGTATGGTGTCACATCCTTGCTGATTGGCTTAAA | + |
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Preference number: 6 (lower is better) Translates to: FFTQSINFLIHP*VWCHILADWLK Trigger: TTTAAGCCAATCAGCAAGGATGTGACACCATACCCAGGGATGTATCAGAAAGTTGATACTTTGAGTGAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000010280.11 ENSMUST00000066319.8 |
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