RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PIDD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025507

Ensembl transcript IDs: ENSMUST00000026580.12, ENSMUST00000106005.9, ENSMUST00000128703.8, ENSMUST00000190068.7, ENSMUST00000190882.7

Found 470 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGCAGGCAGGTCTCGGAGCCGGTTGTCCCTCAGGTCAAGCCGAGTaGTCAGTGGCAGGTGGACCAGGCCAGTGGGCACTGAGGTCAGGA +
Preference number: 1 (lower is better)
Translates to: QQAGLGAGCPSGQAE*SVAGGPGQWALRSG
Trigger: TCCTGACCTCAGTGCCCACTGGCCTGGTCCACCTGCCACTGATCACTCGGCTTGACCTGAGGGACAACCGGCTCCGAGACCTGCCTGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190882.7
3UTR TCA 90 bp ACTGCAGCAGAACCTGCTCAGGGTCTCGGCGCCTCTGCAGTGCAATaGGATTCACACGGTGCAGTCGCAGCCGTTCCCAGGCCTTCCGGG +
Preference number: 1 (lower is better)
Translates to: TAAEPAQGLGASAVQ*DSHGAVAAVPRPSG
Trigger: CCCGGAAGGCCTGGGAACGGCTGCGACTGCACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGACCCTGAGCAGGTTCTGCTGCAGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 90 bp CGTGGCAGGCACTGCAGCAGAACCTGCTCAGGGTCTCGGCGCCTCTaGAGTGCAATGAGATTCACACGGTGCAGTCGCAGCCGTTCCCAG +
Preference number: 1 (lower is better)
Translates to: RGRHCSRTCSGSRRL*SAMRFTRCSRSRSQ
Trigger: CTGGGAACGGCTGCGACTGCACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGACCCTGAGCAGGTTCTGCTGCAGTGCCTGCCACG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 90 bp GTAGCGAACCAGCAGCCGACTCAGGGTGGCATCTACCTTGTTCCGTaGCAGGCACTGCAGCAGAACCTGCTCAGGGTCTCGGCGCCTCTG +
Preference number: 1 (lower is better)
Translates to: VANQQPTQGGIYLVP*QALQQNLLRVSAPL
Trigger: CAGAGGCGCCGAGACCCTGAGCAGGTTCTGCTGCAGTGCCTGCCACGGAACAAGGTAGATGCCACCCTGAGTCGGCTGCTGGTTCGCTAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR TCA 90 bp GAGAGACCAGGCCTGGCTCGGGCAACCAGAGTCGATAGTGGATGGTaGCAGGCGTGGTGGTGGCTCCTGCTGGAAACTGTAGGCGGACAC +
Preference number: 1 (lower is better)
Translates to: ERPGLARATRVDSGW*QAWWWLLLETVGGH
Trigger: GTGTCCGCCTACAGTTTCCAGCAGGAGCCACCACCACGCCTGTCACCATCCACTATCGACTCTGGTTGCCCGAGCCAGGCCTGGTCTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 90 bp CAGGCACTGCAGCAGAACCTGCTCAGGGTCTCGGCGCCTCTGCAGTaGAATGAGATTCACACGGTGCAGTCGCAGCCGTTCCCAGGCCTT +
Preference number: 1 (lower is better)
Translates to: QALQQNLLRVSAPLQ*NEIHTVQSQPFPGL
Trigger: AAGGCCTGGGAACGGCTGCGACTGCACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGACCCTGAGCAGGTTCTGCTGCAGTGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 90 bp AGCAGCCGACTCAGGGTGGCATCTACCTTGTTCCGTGGCAGGCACTaGAGCAGAACCTGCTCAGGGTCTCGGCGCCTCTGCAGTGCAATG +
Preference number: 1 (lower is better)
Translates to: SSRLRVASTLFRGRH*SRTCSGSRRLCSAM
Trigger: CATTGCACTGCAGAGGCGCCGAGACCCTGAGCAGGTTCTGCTGCAGTGCCTGCCACGGAACAAGGTAGATGCCACCCTGAGTCGGCTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 90 bp CAGAGGGTTCAGGGCCACGGTAGCGAACCAGCAGCCGACTCAGGGTaGCATCTACCTTGTTCCGTGGCAGGCACTGCAGCAGAACCTGCT +
Preference number: 1 (lower is better)
Translates to: QRVQGHGSEPAADSG*HLPCSVAGTAAEPA
Trigger: AGCAGGTTCTGCTGCAGTGCCTGCCACGGAACAAGGTAGATGCCACCCTGAGTCGGCTGCTGGTTCGCTACCGTGGCCCTGAACCCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 90 bp TCCTCAGGGGCCAGCCCTGTGCGTCGAATGCTGTCCTGGTACTTGTaGCGGCCAAGCTCCAAGATGGCACGCACCTCTTCAGCCACATCC +
Preference number: 1 (lower is better)
Translates to: SSGASPVRRMLSWYL*RPSSKMARTSSATS
Trigger: GGATGTGGCTGAAGAGGTGCGTGCCATCTTGGAGCTTGGCCGCCACAAGTACCAGGACAGCATTCGACGCACAGGGCTGGCCCCTGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR TCA 90 bp ACCCCATGGGGCTGCAGCTCCAGGACACTACTAAGCAGGAAGTCATaGGGTCCCAGAGAGACCAGGCCTGGCTCGGGCAACCAGAGTCGA +
Preference number: 1 (lower is better)
Translates to: TPWGCSSRTLLSRKS*GPRETRPGSGNQSR
Trigger: TCGACTCTGGTTGCCCGAGCCAGGCCTGGTCTCTCTGGGACCTCATGACTTCCTGCTTAGTAGTGTCCTGGAGCTGCAGCCCCATGGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 90 bp AGGGTGGCATCTACCTTGTTCCGTGGCAGGCACTGCAGCAGAACCTaGTCAGGGTCTCGGCGCCTCTGCAGTGCAATGAGATTCACACGG +
Preference number: 1 (lower is better)
Translates to: RVASTLFRGRHCSRT*SGSRRLCSAMRFTR
Trigger: CCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGACCCTGAGCAGGTTCTGCTGCAGTGCCTGCCACGGAACAAGGTAGATGCCACCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 90 bp CAAGTGTTGGATACTGGGCGTAAAACGACCAGGAACCAGGAGAAGTaGGGCACCTGGCAGCGAGCCCAGAGCCTCTTGGGTGCCTCTTCC +
Preference number: 1 (lower is better)
Translates to: QVLDTGRKTTRNQEK*GTWQRAQSLLGASS
Trigger: GGAAGAGGCACCCAAGAGGCTCTGGGCTCGCTGCCAGGTGCCCCACTTCTCCTGGTTCCTGGTCGTTTTACGCCCAGTATCCAACACTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR TCA 90 bp CCTCTGCCGGGCAGCCTCTGCCTCTGCAGGTACCTCCACAGGAAGTaGACCCCGATAAAAGGACACCTGTCCTCGAACATCCTGAGCTTC +
Preference number: 1 (lower is better)
Translates to: PLPGSLCLCRYLHRK*TPIKGHLSSNILSF
Trigger: GAAGCTCAGGATGTTCGAGGACAGGTGTCCTTTTATCGGGGTTCACTTCCTGTGGAGGTACCTGCAGAGGCAGAGGCTGCCCGGCAGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 90 bp TGCGTCGAATGCTGTCCTGGTACTTGTGGCGGCCAAGCTCCAAGATaGCACGCACCTCTTCAGCCACATCCCGCCGATCACTCTGTTCCA +
Preference number: 1 (lower is better)
Translates to: CVECCPGTCGGQAPR*HAPLQPHPADHSVP
Trigger: TGGAACAGAGTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCATCTTGGAGCTTGGCCGCCACAAGTACCAGGACAGCATTCGACGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 90 bp CTGTCCAAATCTGAGGTCAGCAATAGCCTGGGCATTTCTGGAACCTaGGATATGTCTGGGGGACTTGGGGGTGCTGGAGAGGCCTCGCCC +
Preference number: 1 (lower is better)
Translates to: LSKSEVSNSLGISGT*DMSGGLGGAGEASP
Trigger: GGGCGAGGCCTCTCCAGCACCCCCAAGTCCCCCAGACATATCCCAGGTTCCAGAAATGCCCAGGCTATTGCTGACCTCAGATTTGGACAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 90 bp CAGCTGGCCAGTCAGGACCTAGGCGTGAGGCCACACTCAGCAGGTTaGTCTGAGTCAGGAATCCAGTTTCTGCATCACCCAGGTTCAGAG +
Preference number: 1 (lower is better)
Translates to: QLASQDLGVRPHSAG*SESGIQFLHHPGSE
Trigger: CTCTGAACCTGGGTGATGCAGAAACTGGATTCCTGACTCAGAGCAACCTGCTGAGTGTGGCCTCACGCCTAGGTCCTGACTGGCCAGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 90 bp TGTCCAGTCTGGCGCTCAGCCCAAGAGAAGAGCATGTGTCGGACCTaGCCATCCAGGTCATCCCTGAATTCATGCCGGATACGCTGTAGC +
Preference number: 1 (lower is better)
Translates to: CPVWRSAQEKSMCRT*PSRSSLNSCRIRCS
Trigger: GCTACAGCGTATCCGGCATGAATTCAGGGATGACCTGGATGGCCAGGTCCGACACATGCTCTTCTCTTGGGCTGAGCGCCAGACTGGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 90 bp GACACTACTAAGCAGGAAGTCATGAGGTCCCAGAGAGACCAGGCCTaGCTCGGGCAACCAGAGTCGATAGTGGATGGTGACAGGCGTGGT +
Preference number: 1 (lower is better)
Translates to: DTTKQEVMRSQRDQA*LGQPESIVDGDRRG
Trigger: ACCACGCCTGTCACCATCCACTATCGACTCTGGTTGCCCGAGCCAGGCCTGGTCTCTCTGGGACCTCATGACTTCCTGCTTAGTAGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 90 bp GAAGTGCGTGACCTGGAAGCGTGCATACAGGTGGGTGAATTCCAGTaGCACCTGAGTGGTGATATCATCCCAGGTGGTTGTCAGGGGTGT +
Preference number: 1 (lower is better)
Translates to: EVRDLEACIQVGEFQ*HLSGDIIPGGCQGC
Trigger: ACACCCCTGACAACCACCTGGGATGATATCACCACTCAGGTGGCACTGGAATTCACCCACCTGTATGCACGCTTCCAGGTCACGCACTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 90 bp GGAAACTGTAGGCGGACACCACAGGCCAGGGTCACAGAACAGCCATaGGGAGTCACAAGGAAGCTGTCCAAATCTGAGGTCAGCAATAGC +
Preference number: 1 (lower is better)
Translates to: GNCRRTPQARVTEQP*GVTRKLSKSEVSNS
Trigger: GCTATTGCTGACCTCAGATTTGGACAGCTTCCTTGTGACTCCCCATGGCTGTTCTGTGACCCTGGCCTGTGGTGTCCGCCTACAGTTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR TCA 90 bp GACAGTGAGTGGGTTTTTGTATGCTGGGGCACTGGAGCACACGGGTaGGGTAGAAGGATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTA +
Preference number: 1 (lower is better)
Translates to: DSEWVFVCWGTGAHG*GRRIGLCPLVESSL
Trigger: TAAACTTGACTCGACCAGTGGGCAGAGCCCTATCCTTCTACCTCACCCGTGTGCTCCAGTGCCCCAGCATACAAAAACCCACTCACTGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR GCA 90 bp GGTATACCAGAGCCAGTACCAGGAGAAGTGCGTGACCTGGAAGCGTaGATACAGGTGGGTGAATTCCAGTGCCACCTGAGTGGTGATATC +
Preference number: 1 (lower is better)
Translates to: GIPEPVPGEVRDLEA*IQVGEFQCHLSGDI
Trigger: GATATCACCACTCAGGTGGCACTGGAATTCACCCACCTGTATGCACGCTTCCAGGTCACGCACTTCTCCTGGTACTGGCTCTGGTATACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 90 bp CTAGTGTTGTTAACTACTGAGCCATCTCTCCCTCCAGGCCTTCTCTaGTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGG +
Preference number: 1 (lower is better)
Translates to: LVLLTTEPSLPPGLL*SHLSRRAWHGSKYG
Trigger: CCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTGGAGGGAGAGATGGCTCAGTAGTTAACAACACTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR GCA 90 bp GCCTCTGATTCTTCCAGAAGGGTTCTCAGCTCTAGTCCAGCCATATaGACTACCTGCATGGAGACTTGCCGAGGCTCTTCTGTAACCCCA +
Preference number: 1 (lower is better)
Translates to: ASDSSRRVLSSSPAI*TTCMETCRGSSVTP
Trigger: TGGGGTTACAGAAGAGCCTCGGCAAGTCTCCATGCAGGTAGTGCATATGGCTGGACTAGAGCTGAGAACCCTTCTGGAAGAATCAGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 90 bp TCTCTCCCTCCAGGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTaGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTTATGT +
Preference number: 1 (lower is better)
Translates to: SLPPGLLCSHLSRRA*HGSKYGQPALYPLC
Trigger: ACATAAAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTGGAGGGAGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR GCA 90 bp ACAGTCTGGACGGTCTGCATCTACATCAATGCCCCGCTCAAAGGCTaGAAAGAACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGG +
Preference number: 1 (lower is better)
Translates to: TVWTVCIYINAPLKG*KELLTLKHLHSLRG
Trigger: CCCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCAGCCTTTGAGCGGGGCATTGATGTAGATGCAGACCGTCCAGACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 90 bp AGATTCTGCCATCCACACAGTCTGGACGGTCTGCATCTACATCAATaGCCCGCTCAAAGGCTGCAAAGAACTTCTCACCCTCAAACATCT +
Preference number: 1 (lower is better)
Translates to: RFCHPHSLDGLHLHQ*PAQRLQRTSHPQTS
Trigger: AGATGTTTGAGGGTGAGAAGTTCTTTGCAGCCTTTGAGCGGGGCATTGATGTAGATGCAGACCGTCCAGACTGTGTGGATGGCAGAATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 90 bp ATAGAAGACAAAGCAGATTCTGCCATCCACACAGTCTGGACGGTCTaGATCTACATCAATGCCCCGCTCAAAGGCTGCAAAGAACTTCTC +
Preference number: 1 (lower is better)
Translates to: IEDKADSAIHTVWTV*IYINAPLKGCKELL
Trigger: GAGAAGTTCTTTGCAGCCTTTGAGCGGGGCATTGATGTAGATGCAGACCGTCCAGACTGTGTGGATGGCAGAATCTGCTTTGTCTTCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 90 bp CCTCCTTTACGTTCTTCAGGTGTGAATAGAAGACAAAGCAGATTCTaGCATCCACACAGTCTGGACGGTCTGCATCTACATCAATGCCCC +
Preference number: 1 (lower is better)
Translates to: PPLRSSGVNRRQSRF*HPHSLDGLHLHQCP
Trigger: GGGGCATTGATGTAGATGCAGACCGTCCAGACTGTGTGGATGGCAGAATCTGCTTTGTCTTCTATTCACACCTGAAGAACGTAAAGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp CCCAGGTTCAGAGGCATCAAGGAGAAGTCAGTCCCCTGCCCACTCCCCTGGGCACTGCCGGGCAGCCTCTaGCTCTGCAGGTACCTCCAC +
Preference number: 2 (lower is better)
Translates to: PRFRGIKEKSVPCPLPWALPGSL*LCRYLH
Trigger: GTGGAGGTACCTGCAGAGGCAGAGGCTGCCCGGCAG...TGCCCAGGGGAGTGGGCAGGGGACTGACTTCTCCTTGATGCCTCTGAACCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp CGCCGATCACTCTGTTCCAAGGCCTGTACCAGGTGTCCCACAGCTCCAGGCTGTGGGACTTGGGGGTGCTaGAGAGGCCTCGCCCAGAGG +
Preference number: 2 (lower is better)
Translates to: RRSLCSKACTRCPTAPGCGTWGC*RGLAQR
Trigger: CCTCTGGGCGAGGCCTCTCCAGCACCCCCAAGTCCC...ACAGCCTGGAGCTGTGGGACACCTGGTACAGGCCTTGGAACAGAGTGATCGGCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp CAGGGGCCAGCCCTGTGCGTCGAATGCTGTCCTGGTACTTGTGGCGGCCAAGCTGGAGTCTCGGTAGCTTaGTGGGCAAGGTGGCCATCC +
Preference number: 2 (lower is better)
Translates to: QGPALCVECCPGTCGGQAGVSVA*WARWPS
Trigger: GGATGGCCACCTTGCCCATCAAGCTACCGAGACTCC...AGCTTGGCCGCCACAAGTACCAGGACAGCATTCGACGCACAGGGCTGGCCCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp TGGGCAAGGTGGCCATCCACAGTGCATCTGTACCCTTCCTCTGCCGGGCAGCCTCAGGCCAGTGGGCACTaGGGTCAGGAGGTTGCTGTG +
Preference number: 2 (lower is better)
Translates to: WARWPSTVHLYPSSAGQPQASGH*GQEVAV
Trigger: CACAGCAACCTCCTGACCTCAGTGCCCACTGGCCTG...AGGCTGCCCGGCAGAGGAAGGGTACAGATGCACTGTGGATGGCCACCTTGCCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp CGGCCAAGCTCCAAGATGGCACGCACCTCTTCAGCCACATCCCGCCGATCACTCCACTGCAGCAGAACCTaGTCAGGGTCTCGGCGCCTC +
Preference number: 2 (lower is better)
Translates to: RPSSKMARTSSATSRRSLHCSRT*SGSRRL
Trigger: GAGGCGCCGAGACCCTGAGCAGGTTCTGCTGCAGTG...GAGTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCATCTTGGAGCTTGGCCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp CAGCCGACTCAGGGTGGCATCTACCTTGTTCCGTGGCAGGCACTGCAGCAGAACCTGCCGGGCAGCCTCTaGCTCTGCAGGTACCTCCAC +
Preference number: 2 (lower is better)
Translates to: QPTQGGIYLVPWQALQQNLPGSL*LCRYLH
Trigger: GTGGAGGTACCTGCAGAGGCAGAGGCTGCCCGGCAG...GTTCTGCTGCAGTGCCTGCCACGGAACAAGGTAGATGCCACCCTGAGTCGGCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp GGCAGAGTAGAATCCTCAGGGGCCAGCCCTGTGCGTCGAATGCTGTCCTGGTACGAGAAGTCAGTCCCCTaGCCACTCCCCTGGGCACCC +
Preference number: 2 (lower is better)
Translates to: GRVESSGASPVRRMLSWYEKSVP*PLPWAP
Trigger: GGGTGCCCAGGGGAGTGGGCAGGGGACTGACTTCTC...GTACCAGGACAGCATTCGACGCACAGGGCTGGCCCCTGAGGATTCTACTCTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp GATGGCACGCACCTCTTCAGCCACATCCCGCCGATCACTCTGTTCCAAGGCCTGCCCAGAGGGTTCCCCTaGAGGCGCACAAAGGGAGCG +
Preference number: 2 (lower is better)
Translates to: DGTHLFSHIPPITLFQGLPRGFP*RRTKGA
Trigger: CGCTCCCTTTGTGCGCCTGCAGGGGAACCCTCTGGG...CAGGCCTTGGAACAGAGTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp TGGGCAAGGTGGCCATCCACAGTGCATCTGTACCCTTCCTCTGCCGGGCAGCCTTTCCGTGGCAGGCACTaGAGCAGAACCTGCTCAGGG +
Preference number: 2 (lower is better)
Translates to: WARWPSTVHLYPSSAGQPFRGRH*SRTCSG
Trigger: CCCTGAGCAGGTTCTGCTGCAGTGCCTGCCACGGAA...AGGCTGCCCGGCAGAGGAAGGGTACAGATGCACTGTGGATGGCCACCTTGCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTATGTGCCTGGTGTCTGTaGGGGCCAGAGGAAGGGGCT +
Preference number: 2 (lower is better)
Translates to: AWCLWGPEEGADPSELELCAWCL*GPEEGA
Trigger: AGCCCCTTCCTCTGGCCCCCACAGACACCAGGCACA...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp TCAGGGTCTCGGCGCCTCTGCAGTGCAATGAGATTCACACGGTGCAGTCGCAGCTGTGCCTGGTGTCTGTaGGGGCCAGAGGAAGGGGCT +
Preference number: 2 (lower is better)
Translates to: SGSRRLCSAMRFTRCSRSCAWCL*GPEEGA
Trigger: AGCCCCTTCCTCTGGCCCCCACAGACACCAGGCACA...GCTGCGACTGCACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGACCCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp TCACCCAGGTTCAGAGGCATCAAGGAGAAGTCAGTCCCCTGCCCACTCCCCTGGTGTGCCTGGTGTCTGTaGGGGCCAGAGGAAGGGGCT +
Preference number: 2 (lower is better)
Translates to: SPRFRGIKEKSVPCPLPWCAWCL*GPEEGA
Trigger: AGCCCCTTCCTCTGGCCCCCACAGACACCAGGCACA...CCAGGGGAGTGGGCAGGGGACTGACTTCTCCTTGATGCCTCTGAACCTGGGTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp TGCTCAGGGTCTCGGCGCCTCTGCAGTGCAATGAGATTCACACGGTGCAGTCGCAGGAACCAGGAGAAGTaGGGCACCTGGCAGCGAGCC +
Preference number: 2 (lower is better)
Translates to: CSGSRRLCSAMRFTRCSRRNQEK*GTWQRA
Trigger: GGCTCGCTGCCAGGTGCCCCACTTCTCCTGGTTCCT...GCGACTGCACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGACCCTGAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTAGGGGGCCGCTCTGCATaGAGACTTGCCGAGGCTCTT +
Preference number: 2 (lower is better)
Translates to: AWCLWGPEEGADPSELELGGRSA*RLAEAL
Trigger: AAGAGCCTCGGCAAGTCTCCATGCAGAGCGGCCCCC...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
3UTR-3UTR CCA 90 bp GTCTGGCGCTCAGCCCAAGAGAAGAGCATGTGTCGGACCTGGCCATCCAGGTCAGGTGGACCAGGCCAGTaGGCACTGAGGTCAGGAGGT +
Preference number: 2 (lower is better)
Translates to: VWRSAQEKSMCRTWPSRSGGPGQ*ALRSGG
Trigger: ACCTCCTGACCTCAGTGCCCACTGGCCTGGTCCACC...TGACCTGGATGGCCAGGTCCGACACATGCTCTTCTCTTGGGCTGAGCGCCAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp AGCCGACTCAGGGTGGCATCTACCTTGTTCCGTGGCAGGCACTGCAGCAGAACCCAGAGAGACCAGGCCTaGCTCGGGCAACCAGAGTCG +
Preference number: 2 (lower is better)
Translates to: SRLRVASTLFRGRHCSRTQRDQA*LGQPES
Trigger: CGACTCTGGTTGCCCGAGCCAGGCCTGGTCTCTCTG...GGTTCTGCTGCAGTGCCTGCCACGGAACAAGGTAGATGCCACCCTGAGTCGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CAA 90 bp GAATCCTCAGGGGCCAGCCCTGTGCGTCGAATGCTGTCCTGGTACTaGTGGCGGCCAAGCTCCAAGATGGCACGCACCTCTTCAGCCACA +
Preference number: 2 (lower is better)
Translates to: ESSGASPVRRMLSWY*WRPSSKMARTSSAT
Trigger: TGTGGCTGAAGAGGTGCGTGCCATCTTGGAGCTTGGCCGCCACAAGTACCAGGACAGCATTCGACGCACAGGGCTGGCCCCTGAGGATTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp GATGGCACGCACCTCTTCAGCCACATCCCGCCGATCACTCTGTTCCAAGGCCTGGACCCCAGGATGACCTaGGGAGCAGAGAAGTGCTCC +
Preference number: 2 (lower is better)
Translates to: DGTHLFSHIPPITLFQGLDPRMT*GAEKCS
Trigger: GGAGCACTTCTCTGCTCCTCAGGTCATCCTGGGGTC...CAGGCCTTGGAACAGAGTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp TCACCCAGGTTCAGAGGCATCAAGGAGAAGTCAGTCCCCTGCCCACTCCCCTGGGACCCCAGGATGACCTaGGGAGCAGAGAAGTGCTCC +
Preference number: 2 (lower is better)
Translates to: SPRFRGIKEKSVPCPLPWDPRMT*GAEKCS
Trigger: GGAGCACTTCTCTGCTCCTCAGGTCATCCTGGGGTC...CCAGGGGAGTGGGCAGGGGACTGACTTCTCCTTGATGCCTCTGAACCTGGGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp TGCAGTGCAATGAGATTCACACGGTGCAGTCGCAGCCGTTCCCAGGCCTTCCGGGGCAGCCTCTGCCTCTaGAGGTACCTCCACAGGAAG +
Preference number: 2 (lower is better)
Translates to: CSAMRFTRCSRSRSQAFRGSLCL*RYLHRK
Trigger: CTTCCTGTGGAGGTACCTGCAGAGGCAGAGGCTGCC...CCGGAAGGCCTGGGAACGGCTGCGACTGCACCGTGTGAATCTCATTGCACTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp CCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACTCTGTACCCTTCCTCTaGCGGGCAGCCTCTGCCTCT +
Preference number: 2 (lower is better)
Translates to: PGVCGGQRKGLTLQNWSYSVPFL*RAASAS
Trigger: AGAGGCAGAGGCTGCCCGGCAGAGGAAGGGTACAGA...GTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR GCA 90 bp CGCCGATCACTCTGTTCCAAGGCCTGTACCAGGTGTCCCACAGCTCCAGGCTGTGCCACCCCATGGGGCTaGAGCTCCAGGACACTACTA +
Preference number: 2 (lower is better)
Translates to: RRSLCSKACTRCPTAPGCATPWG*SSRTLL
Trigger: TAGTAGTGTCCTGGAGCTGCAGCCCCATGGGGTGGC...ACAGCCTGGAGCTGTGGGACACCTGGTACAGGCCTTGGAACAGAGTGATCGGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp TCAGGGTCTCGGCGCCTCTGCAGTGCAATGAGATTCACACGGTGCAGTCGCAGCGCCACCCCATGGGGCTaGAGCTCCAGGACACTACTA +
Preference number: 2 (lower is better)
Translates to: SGSRRLCSAMRFTRCSRSATPWG*SSRTLL
Trigger: TAGTAGTGTCCTGGAGCTGCAGCCCCATGGGGTGGC...GCTGCGACTGCACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGACCCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp TGGGCAAGGTGGCCATCCACAGTGCATCTGTACCCTTCCTCTGCCGGGCAGCCTCGTCGAATGCTGTCCTaGTACTTGTGGCGGCCAAGC +
Preference number: 2 (lower is better)
Translates to: WARWPSTVHLYPSSAGQPRRMLS*YLWRPS
Trigger: GCTTGGCCGCCACAAGTACCAGGACAGCATTCGACG...AGGCTGCCCGGCAGAGGAAGGGTACAGATGCACTGTGGATGGCCACCTTGCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CAA 90 bp ACAAAGGGAGCGTCTAGTAACTCAGCAGGCAGGTCTCGGAGCCGGTaGTCCCTCAGGTCAAGCCGAGTGATCAGTGGCAGGTGGACCAGG +
Preference number: 2 (lower is better)
Translates to: TKGASSNSAGRSRSR*SLRSSRVISGRWTR
Trigger: CCTGGTCCACCTGCCACTGATCACTCGGCTTGACCTGAGGGACAACCGGCTCCGAGACCTGCCTGCTGAGTTACTAGACGCTCCCTTTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTAGCCAGAGGAAGGGGCTaGCCCTTCAGAACTGGAGTT +
Preference number: 2 (lower is better)
Translates to: AWCLWGPEEGADPSELELARGRG*PFRTGV
Trigger: AACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGC...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR TCA 90 bp ATGGCACGCACCTCTTCAGCCACATCCCGCCGATCACTCTGTTCCAAGGCCTGTGACCCCAGGATGACCTaGGGAGCAGAGAAGTGCTCC +
Preference number: 2 (lower is better)
Translates to: MARTSSATSRRSLCSKACDPRMT*GAEKCS
Trigger: GGAGCACTTCTCTGCTCCTCAGGTCATCCTGGGGTC...ACAGGCCTTGGAACAGAGTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp AGGTGGCCATCCACAGTGCATCTGTACCCTTCCTCTGCCGGGCAGCCTCTGCCTACCAGGAGAAGTGCGTaGCCTGGAAGCGTGCATACA +
Preference number: 2 (lower is better)
Translates to: RWPSTVHLYPSSAGQPLPTRRSA*PGSVHT
Trigger: TGTATGCACGCTTCCAGGTCACGCACTTCTCCTGGT...AGGCAGAGGCTGCCCGGCAGAGGAAGGGTACAGATGCACTGTGGATGGCCACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp TCCCAGAGAGACCAGGCCTGGCTCGGGCAACCAGAGTCGATAGTGGATGGTGACCCAGAGCCTCTTGGGTaGCTCTTCCTCCAGTTGGGT +
Preference number: 2 (lower is better)
Translates to: SQRDQAWLGQPESIVDGDPEPLG*LFLQLG
Trigger: ACCCAACTGGAGGAAGAGGCACCCAAGAGGCTCTGG...GTCACCATCCACTATCGACTCTGGTTGCCCGAGCCAGGCCTGGTCTCTCTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp ATGGCACGCACCTCTTCAGCCACATCCCGCCGATCACTCTGTTCCAAGGCCTGTGGCAGCCTCTGCCTCTaGAGGTACCTCCACAGGAAG +
Preference number: 2 (lower is better)
Translates to: MARTSSATSRRSLCSKACGSLCL*RYLHRK
Trigger: CTTCCTGTGGAGGTACCTGCAGAGGCAGAGGCTGCC...ACAGGCCTTGGAACAGAGTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp CAGGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGAGAAGTCAGTCCCCTaGCCACTCCCCTGGGCACCC +
Preference number: 2 (lower is better)
Translates to: QAFSAPILAEGPGMVASMEKSVP*PLPWAP
Trigger: GGGTGCCCAGGGGAGTGGGCAGGGGACTGACTTCTC...CATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR GCA 90 bp TCAGGGTCTCGGCGCCTCTGCAGTGCAATGAGATTCACACGGTGCAGTCGCAGCGTCAGGAGGTTGCTGTaGAGAACAAGGAGCCGCAGG +
Preference number: 2 (lower is better)
Translates to: SGSRRLCSAMRFTRCSRSVRRLL*RTRSRR
Trigger: CCTGCGGCTCCTTGTTCTGCACAGCAACCTCCTGAC...GCTGCGACTGCACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGACCCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp TTCTGCCATCCACACAGTCTGGACGGTCTGCATCTACATCAATGCCCCGCTCAATGGGGGACTTGGGGGTaGTGGAGAGGCCTCGCCCAG +
Preference number: 2 (lower is better)
Translates to: FCHPHSLDGLHLHQCPAQWGTWG*WRGLAQ
Trigger: CTGGGCGAGGCCTCTCCAGCACCCCCAAGTCCCCCA...TTGAGCGGGGCATTGATGTAGATGCAGACCGTCCAGACTGTGTGGATGGCAGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp TGCATCACCCAGGTTCAGAGGCATCAAGGAGAAGTCAGTCCCCTGCCCACTCCCGCACACATGTGTGCCTaGTGTCTGTGGGGGCCAGAG +
Preference number: 2 (lower is better)
Translates to: CITQVQRHQGEVSPLPTPAHMCA*CLWGPE
Trigger: CTCTGGCCCCCACAGACACCAGGCACACATGTGTGC...GGGAGTGGGCAGGGGACTGACTTCTCCTTGATGCCTCTGAACCTGGGTGATGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTAGGCCAAGCTCCAAGATaGCACGCACCTCTTCAGCCA +
Preference number: 2 (lower is better)
Translates to: AWCLWGPEEGADPSELELGQAPR*HAPLQP
Trigger: TGGCTGAAGAGGTGCGTGCCATCTTGGAGCTTGGCC...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp TCCCAGAGAGACCAGGCCTGGCTCGGGCAACCAGAGTCGATAGTGGATGGTGACAAGCCGAGTGATCAGTaGCAGGTGGACCAGGCCAGT +
Preference number: 2 (lower is better)
Translates to: SQRDQAWLGQPESIVDGDKPSDQ*QVDQAS
Trigger: ACTGGCCTGGTCCACCTGCCACTGATCACTCGGCTT...GTCACCATCCACTATCGACTCTGGTTGCCCGAGCCAGGCCTGGTCTCTCTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp GGAACCTGGGATATGTCTGGGGGACTTGGGGGTGCTGGAGAGGCCTCGCCCAGAGCTTGGGCTAGACAGTaGGTGGGTTTTTGTATGCTG +
Preference number: 2 (lower is better)
Translates to: GTWDMSGGLGGAGEASPRAWARQ*VGFCML
Trigger: CAGCATACAAAAACCCACTCACTGTCTAGCCCAAGC...TCTGGGCGAGGCCTCTCCAGCACCCCCAAGTCCCCCAGACATATCCCAGGTTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000190068.7
3UTR-3UTR TCA 90 bp GTGGCGGCCAAGCTCCAAGATGGCACGCACCTCTTCAGCCACATCCCGCCGATCAGTGTTGTTAACTACTaGGCCATCTCTCCCTCCAGG +
Preference number: 2 (lower is better)
Translates to: VAAKLQDGTHLFSHIPPISVVNY*AISPSR
Trigger: CCTGGAGGGAGAGATGGCTCAGTAGTTAACAACACT...GATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCATCTTGGAGCTTGGCCGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR TCA 90 bp TCACCCAGGTTCAGAGGCATCAAGGAGAAGTCAGTCCCCTGCCCACTCCCCTGGGTGCATACAGGTGGGTaGATTCCAGTGCCACCTGAG +
Preference number: 2 (lower is better)
Translates to: SPRFRGIKEKSVPCPLPWVHTGG*IPVPPE
Trigger: CTCAGGTGGCACTGGAATTCACCCACCTGTATGCAC...CCAGGGGAGTGGGCAGGGGACTGACTTCTCCTTGATGCCTCTGAACCTGGGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp TGCAGTGCAATGAGATTCACACGGTGCAGTCGCAGCCGTTCCCAGGCCTTCCGGTCGGCGCCTCTGCAGTaGAATGAGATTCACACGGTG +
Preference number: 2 (lower is better)
Translates to: CSAMRFTRCSRSRSQAFRSAPLQ*NEIHTV
Trigger: CACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGA...CCGGAAGGCCTGGGAACGGCTGCGACTGCACCGTGTGAATCTCATTGCACTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp GGCACAGCAGAGGGCTTACTGATGCCTCTGATTCTTCCAGAAGGGTTCTCAGCTCCCAGAGGGTTCCCCTaGAGGCGCACAAAGGGAGCG +
Preference number: 2 (lower is better)
Translates to: GTAEGLLMPLILPEGFSAPRGFP*RRTKGA
Trigger: CGCTCCCTTTGTGCGCCTGCAGGGGAACCCTCTGGG...AGCTGAGAACCCTTCTGGAAGAATCAGAGGCATCAGTAAGCCCTCTGCTGTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp CCCGCTCAAAGGCTGCAAAGAACTTCTCACCCTCAAACATCTCCACAGTCTCAGTGGGGGACTTGGGGGTaGTGGAGAGGCCTCGCCCAG +
Preference number: 2 (lower is better)
Translates to: PAQRLQRTSHPQTSPQSQWGTWG*WRGLAQ
Trigger: CTGGGCGAGGCCTCTCCAGCACCCCCAAGTCCCCCA...CTGAGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCAGCCTTTGAGCGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp TCAGCTCTAGTCCAGCCATATGCACTACCTGCATGGAGACTTGCCGAGGCTCTTGAGAAGTGGGGCACCTaGCAGCGAGCCCAGAGCCTC +
Preference number: 2 (lower is better)
Translates to: SALVQPYALPAWRLAEALEKWGT*QRAQSL
Trigger: GAGGCTCTGGGCTCGCTGCCAGGTGCCCCACTTCTC...AAGAGCCTCGGCAAGTCTCCATGCAGGTAGTGCATATGGCTGGACTAGAGCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp CCAGTACCAGGAGAAGTGCGTGACCTGGAAGCGTGCATACAGGTGGGTGAATTCAGGAACCAGGAGAAGTaGGGCACCTGGCAGCGAGCC +
Preference number: 2 (lower is better)
Translates to: PVPGEVRDLEACIQVGEFRNQEK*GTWQRA
Trigger: GGCTCGCTGCCAGGTGCCCCACTTCTCCTGGTTCCT...GAATTCACCCACCTGTATGCACGCTTCCAGGTCACGCACTTCTCCTGGTACTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp ACAAAGAGCAGCCATAAGCTCACATCTTGCTGGAAAGCCACCCCATGGGGCTGCAGGAACCAGGAGAAGTaGGGCACCTGGCAGCGAGCC +
Preference number: 2 (lower is better)
Translates to: TKSSHKLTSCWKATPWGCRNQEK*GTWQRA
Trigger: GGCTCGCTGCCAGGTGCCCCACTTCTCCTGGTTCCT...GCAGCCCCATGGGGTGGCTTTCCAGCAAGATGTGAGCTTATGGCTGCTCTTTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp CAAAGAGCAGCCATAAGCTCACATCTTGCTGGAAAGCCACCCCATGGGGCTGCACAGAGAGACCAGGCCTaGCTCGGGCAACCAGAGTCG +
Preference number: 2 (lower is better)
Translates to: QRAAISSHLAGKPPHGAAQRDQA*LGQPES
Trigger: CGACTCTGGTTGCCCGAGCCAGGCCTGGTCTCTCTG...TGCAGCCCCATGGGGTGGCTTTCCAGCAAGATGTGAGCTTATGGCTGCTCTTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp GTAGAATCCTCAGGGGCCAGCCCTGTGCGTCGAATGCTGTCCTGGTACTTGTGGCTAAGCAGGAAGTCATaGGGTCCCAGAGAGACCAGG +
Preference number: 2 (lower is better)
Translates to: VESSGASPVRRMLSWYLWLSRKS*GPRETR
Trigger: CCTGGTCTCTCTGGGACCTCATGACTTCCTGCTTAG...CCACAAGTACCAGGACAGCATTCGACGCACAGGGCTGGCCCCTGAGGATTCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp ACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGGTTCAGGGCCACGGTAGCGTCTGCACACATGTGTaGCTGGTGTCTGTGGGGGCC +
Preference number: 2 (lower is better)
Translates to: TSHPQTSPQSQRVQGHGSVCTHV*LVSVGA
Trigger: GGCCCCCACAGACACCAGGCACACATGTGTGCAGAC...GCTACCGTGGCCCTGAACCCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR GCA 90 bp CTGCTCAGGGTCTCGGCGCCTCTGCAGTGCAATGAGATTCACACGGTGCAGTCGCTCTGCATGGAGACTTaGCGAGGCTCTTCTGTAACC +
Preference number: 2 (lower is better)
Translates to: LLRVSAPLQCNEIHTVQSLCMET*RGSSVT
Trigger: GGTTACAGAAGAGCCTCGGCAAGTCTCCATGCAGAG...CGACTGCACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGACCCTGAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
3UTR-3UTR GCA 90 bp GTAGAATCCTCAGGGGCCAGCCCTGTGCGTCGAATGCTGTCCTGGTACTTGTGGTCGGCGCCTCTGCAGTaGAATGAGATTCACACGGTG +
Preference number: 2 (lower is better)
Translates to: VESSGASPVRRMLSWYLWSAPLQ*NEIHTV
Trigger: CACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGA...CCACAAGTACCAGGACAGCATTCGACGCACAGGGCTGGCCCCTGAGGATTCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp CAGGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGTTCCGTGGCAGGCACTaGAGCAGAACCTGCTCAGGG +
Preference number: 2 (lower is better)
Translates to: QAFSAPILAEGPGMVASMFRGRH*SRTCSG
Trigger: CCCTGAGCAGGTTCTGCTGCAGTGCCTGCCACGGAA...CATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp GTCCAGTCTGGCGCTCAGCCCAAGAGAAGAGCATGTGTCGGACCTGGCCATCCAGGGCTAGACAGTGAGTaGGTTTTTGTATGCTGGGGC +
Preference number: 2 (lower is better)
Translates to: VQSGAQPKRRACVGPGHPGLDSE*VFVCWG
Trigger: GCCCCAGCATACAAAAACCCACTCACTGTCTAGCCC...TGGATGGCCAGGTCCGACACATGCTCTTCTCTTGGGCTGAGCGCCAGACTGGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp TGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACAGATTGTCATGGCACACATGTGTGCCTaGTGTCTGTGGGGGCCAGAG +
Preference number: 2 (lower is better)
Translates to: WGPEEGADPSELELQIVMAHMCA*CLWGPE
Trigger: CTCTGGCCCCCACAGACACCAGGCACACATGTGTGC...CATGACAATCTGTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp AGGAGCAGAGAAGTGCTCCCTCTGGTGGCAAAAGGCAAGTGTTGGATACTGGGCGCACACATGTGTGCCTaGTGTCTGTGGGGGCCAGAG +
Preference number: 2 (lower is better)
Translates to: RSREVLPLVAKGKCWILGAHMCA*CLWGPE
Trigger: CTCTGGCCCCCACAGACACCAGGCACACATGTGTGC...GCCCAGTATCCAACACTTGCCTTTTGCCACCAGAGGGAGCACTTCTCTGCTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp GGCAGAGTAGAATCCTCAGGGGCCAGCCCTGTGCGTCGAATGCTGTCCTGGTACGCCTCTTCCTCCAGTTaGGTCTCTAGGTCATTCCAG +
Preference number: 2 (lower is better)
Translates to: GRVESSGASPVRRMLSWYASSSS*VSRSFQ
Trigger: CTGGAATGACCTAGAGACCCAACTGGAGGAAGAGGC...GTACCAGGACAGCATTCGACGCACAGGGCTGGCCCCTGAGGATTCTACTCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp TCAGGGTCTCGGCGCCTCTGCAGTGCAATGAGATTCACACGGTGCAGTCGCAGCGCCTCTTCCTCCAGTTaGGTCTCTAGGTCATTCCAG +
Preference number: 2 (lower is better)
Translates to: SGSRRLCSAMRFTRCSRSASSSS*VSRSFQ
Trigger: CTGGAATGACCTAGAGACCCAACTGGAGGAAGAGGC...GCTGCGACTGCACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGACCCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp AAAGAACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGGTTCAGGGCCACGGAGAAGTGGGGCACCTaGCAGCGAGCCCAGAGCCTC +
Preference number: 2 (lower is better)
Translates to: KELLTLKHLHSLRGFRATEKWGT*QRAQSL
Trigger: GAGGCTCTGGGCTCGCTGCCAGGTGCCCCACTTCTC...CGTGGCCCTGAACCCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp CGCCGATCACTCTGTTCCAAGGCCTGTACCAGGTGTCCCACAGCTCCAGGCTGTAAGCGTGCATACAGGTaGGTGAATTCCAGTGCCACC +
Preference number: 2 (lower is better)
Translates to: RRSLCSKACTRCPTAPGCKRAYR*VNSSAT
Trigger: GGTGGCACTGGAATTCACCCACCTGTATGCACGCTT...ACAGCCTGGAGCTGTGGGACACCTGGTACAGGCCTTGGAACAGAGTGATCGGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp TGCAGTGCAATGAGATTCACACGGTGCAGTCGCAGCCGTTCCCAGGCCTTCCGGCCCCCACACAGGTTTTaGTGGTATACCAGAGCCAGT +
Preference number: 2 (lower is better)
Translates to: CSAMRFTRCSRSRSQAFRPPHRF*WYTRAS
Trigger: ACTGGCTCTGGTATACCACCAAAACCTGTGTGGGGG...CCGGAAGGCCTGGGAACGGCTGCGACTGCACCGTGTGAATCTCATTGCACTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp GTCTGGCGCTCAGCCCAAGAGAAGAGCATGTGTCGGACCTGGCCATCCAGGTCACCCCCACACAGGTTTTaGTGGTATACCAGAGCCAGT +
Preference number: 2 (lower is better)
Translates to: VWRSAQEKSMCRTWPSRSPPHRF*WYTRAS
Trigger: ACTGGCTCTGGTATACCACCAAAACCTGTGTGGGGG...TGACCTGGATGGCCAGGTCCGACACATGCTCTTCTCTTGGGCTGAGCGCCAGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp CGCCGATCACTCTGTTCCAAGGCCTGTACCAGGTGTCCCACAGCTCCAGGCTGTATCTACCTTGTTCCGTaGCAGGCACTGCAGCAGAAC +
Preference number: 2 (lower is better)
Translates to: RRSLCSKACTRCPTAPGCIYLVP*QALQQN
Trigger: GTTCTGCTGCAGTGCCTGCCACGGAACAAGGTAGAT...ACAGCCTGGAGCTGTGGGACACCTGGTACAGGCCTTGGAACAGAGTGATCGGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp CCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACATCTACCTTGTTCCGTaGCAGGCACTGCAGCAGAAC +
Preference number: 2 (lower is better)
Translates to: PGVCGGQRKGLTLQNWSYIYLVP*QALQQN
Trigger: GTTCTGCTGCAGTGCCTGCCACGGAACAAGGTAGAT...GTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp GGCAGAGTAGAATCCTCAGGGGCCAGCCCTGTGCGTCGAATGCTGTCCTGGTACATCTACCTTGTTCCGTaGCAGGCACTGCAGCAGAAC +
Preference number: 2 (lower is better)
Translates to: GRVESSGASPVRRMLSWYIYLVP*QALQQN
Trigger: GTTCTGCTGCAGTGCCTGCCACGGAACAAGGTAGAT...GTACCAGGACAGCATTCGACGCACAGGGCTGGCCCCTGAGGATTCTACTCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp AGGTGGCCATCCACAGTGCATCTGTACCCTTCCTCTGCCGGGCAGCCTCTGCCTGGCATTTCTGGAACCTaGGATATGTCTGGGGGACTT +
Preference number: 2 (lower is better)
Translates to: RWPSTVHLYPSSAGQPLPGISGT*DMSGGL
Trigger: AAGTCCCCCAGACATATCCCAGGTTCCAGAAATGCC...AGGCAGAGGCTGCCCGGCAGAGGAAGGGTACAGATGCACTGTGGATGGCCACCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp CGCCGATCACTCTGTTCCAAGGCCTGTACCAGGTGTCCCACAGCTCCAGGCTGTAGGTCAGCAATAGCCTaGGCATTTCTGGAACCTGGG +
Preference number: 2 (lower is better)
Translates to: RRSLCSKACTRCPTAPGCRSAIA*AFLEPG
Trigger: CCCAGGTTCCAGAAATGCCCAGGCTATTGCTGACCT...ACAGCCTGGAGCTGTGGGACACCTGGTACAGGCCTTGGAACAGAGTGATCGGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp GTCCAGTCTGGCGCTCAGCCCAAGAGAAGAGCATGTGTCGGACCTGGCCATCCAAGGTCAGCAATAGCCTaGGCATTTCTGGAACCTGGG +
Preference number: 2 (lower is better)
Translates to: VQSGAQPKRRACVGPGHPRSAIA*AFLEPG
Trigger: CCCAGGTTCCAGAAATGCCCAGGCTATTGCTGACCT...TGGATGGCCAGGTCCGACACATGCTCTTCTCTTGGGCTGAGCGCCAGACTGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTAGTCACAGAACAGCCATaGGGAGTCACAAGGAAGCTG +
Preference number: 2 (lower is better)
Translates to: AWCLWGPEEGADPSELELVTEQP*GVTRKL
Trigger: CAGCTTCCTTGTGACTCCCCATGGCTGTTCTGTGAC...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp ATGGCACGCACCTCTTCAGCCACATCCCGCCGATCACTCTGTTCCAAGGCCTGTAAGCTCACATCTTGCTaGAAAGCCACCCCATGGGGC +
Preference number: 2 (lower is better)
Translates to: MARTSSATSRRSLCSKACKLTSC*KATPWG
Trigger: GCCCCATGGGGTGGCTTTCCAGCAAGATGTGAGCTT...ACAGGCCTTGGAACAGAGTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp CCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACGCTTGGGCTAGACAGTaGGTGGGTTTTTGTATGCTG +
Preference number: 2 (lower is better)
Translates to: PGVCGGQRKGLTLQNWSYAWARQ*VGFCML
Trigger: CAGCATACAAAAACCCACTCACTGTCTAGCCCAAGC...GTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR TCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTAAATTCCAGTGCCACCTaGGTGGTGATATCATCCCAG +
Preference number: 2 (lower is better)
Translates to: AWCLWGPEEGADPSELELNSSAT*VVISSQ
Trigger: CTGGGATGATATCACCACTCAGGTGGCACTGGAATT...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR TCA 90 bp ACCCTCAAACATCTCCACAGTCTCAGAGGGTTCAGGGCCACGGTAGCGAACCAGACCAGGAGAAGTGCGTaGCCTGGAAGCGTGCATACA +
Preference number: 2 (lower is better)
Translates to: TLKHLHSLRGFRATVANQTRRSA*PGSVHT
Trigger: TGTATGCACGCTTCCAGGTCACGCACTTCTCCTGGT...CTGGTTCGCTACCGTGGCCCTGAACCCTCTGAGACTGTGGAGATGTTTGAGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp GAGAAGTGCGTGACCTGGAAGCGTGCATACAGGTGGGTGAATTCCAGTGCCACCGCCTCTGCAGTGCAATaGGATTCACACGGTGCAGTC +
Preference number: 2 (lower is better)
Translates to: EKCVTWKRAYRWVNSSATASAVQ*DSHGAV
Trigger: GACTGCACCGTGTGAATCTCATTGCACTGCAGAGGC...GGTGGCACTGGAATTCACCCACCTGTATGCACGCTTCCAGGTCACGCACTTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp GTCTGGCGCTCAGCCCAAGAGAAGAGCATGTGTCGGACCTGGCCATCCAGGTCACTCAGCAGGTTGCTCTaGGTCAGGAATCCAGTTTCT +
Preference number: 2 (lower is better)
Translates to: VWRSAQEKSMCRTWPSRSLSRLL*VRNPVS
Trigger: AGAAACTGGATTCCTGACTCAGAGCAACCTGCTGAG...TGACCTGGATGGCCAGGTCCGACACATGCTCTTCTCTTGGGCTGAGCGCCAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp TCAGCTCTAGTCCAGCCATATGCACTACCTGCATGGAGACTTGCCGAGGCTCTTGTCGATAGTGGATGGTaGCAGGCGTGGTGGTGGCTC +
Preference number: 2 (lower is better)
Translates to: SALVQPYALPAWRLAEALVDSGW*QAWWWL
Trigger: GAGCCACCACCACGCCTGTCACCATCCACTATCGAC...AAGAGCCTCGGCAAGTCTCCATGCAGGTAGTGCATATGGCTGGACTAGAGCTGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp AGGAGCAGAGAAGTGCTCCCTCTGGTGGCAAAAGGCAAGTGTTGGATACTGGGCCCAGAGCCTCTTGGGTaGCTCTTCCTCCAGTTGGGT +
Preference number: 2 (lower is better)
Translates to: RSREVLPLVAKGKCWILGPEPLG*LFLQLG
Trigger: ACCCAACTGGAGGAAGAGGCACCCAAGAGGCTCTGG...GCCCAGTATCCAACACTTGCCTTTTGCCACCAGAGGGAGCACTTCTCTGCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp AGGAGCAGAGAAGTGCTCCCTCTGGTGGCAAAAGGCAAGTGTTGGATACTGGGCGGAGGCAGGGGCAACTaGACAGTGACAGGTTGTAGG +
Preference number: 2 (lower is better)
Translates to: RSREVLPLVAKGKCWILGGGRGN*TVTGCR
Trigger: CCTACAACCTGTCACTGTGCAGTTGCCCCTGCCTCC...GCCCAGTATCCAACACTTGCCTTTTGCCACCAGAGGGAGCACTTCTCTGCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp ACCCTCAAACATCTCCACAGTCTCAGAGGGTTCAGGGCCACGGTAGCGAACCAGGGTGGCCATCCACAGTaGATCTGTACCCTTCCTCTG +
Preference number: 2 (lower is better)
Translates to: TLKHLHSLRGFRATVANQGGHPQ*ICTLPL
Trigger: CAGAGGAAGGGTACAGATGCACTGTGGATGGCCACC...CTGGTTCGCTACCGTGGCCCTGAACCCTCTGAGACTGTGGAGATGTTTGAGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp GCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCTGGGTTTTTGTATGCTaGGGCACTGGAGCACACGGG +
Preference number: 2 (lower is better)
Translates to: AFSAPILAEGPGMVASMGWVFVC*GTGAHG
Trigger: CCCGTGTGCTCCAGTGCCCCAGCATACAAAAACCCA...GCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp CAGAACCTGCTCAGGGTCTCGGCGCCTCTGCAGTGCAATGAGATTCACACGGTGAAGCGTGCATACAGGTaGGTGAATTCCAGTGCCACC +
Preference number: 2 (lower is better)
Translates to: QNLLRVSAPLQCNEIHTVKRAYR*VNSSAT
Trigger: GGTGGCACTGGAATTCACCCACCTGTATGCACGCTT...CACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGACCCTGAGCAGGTTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp GTCTGGCGCTCAGCCCAAGAGAAGAGCATGTGTCGGACCTGGCCATCCAGGTCACCACACAGGTTTTGGTaGTATACCAGAGCCAGTACC +
Preference number: 2 (lower is better)
Translates to: VWRSAQEKSMCRTWPSRSPHRFW*YTRAST
Trigger: GGTACTGGCTCTGGTATACCACCAAAACCTGTGTGG...TGACCTGGATGGCCAGGTCCGACACATGCTCTTCTCTTGGGCTGAGCGCCAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACCACACAGGTTTTGGTaGTATACCAGAGCCAGTACC +
Preference number: 2 (lower is better)
Translates to: AWCLWGPEEGADPSELELPHRFW*YTRAST
Trigger: GGTACTGGCTCTGGTATACCACCAAAACCTGTGTGG...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp TCACCCAGGTTCAGAGGCATCAAGGAGAAGTCAGTCCCCTGCCCACTCCCCTGGGGCATTTCTGGAACCTaGGATATGTCTGGGGGACTT +
Preference number: 2 (lower is better)
Translates to: SPRFRGIKEKSVPCPLPWGISGT*DMSGGL
Trigger: AAGTCCCCCAGACATATCCCAGGTTCCAGAAATGCC...CCAGGGGAGTGGGCAGGGGACTGACTTCTCCTTGATGCCTCTGAACCTGGGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp AAGATGGCACGCACCTCTTCAGCCACATCCCGCCGATCACTCTGTTCCAAGGCCAGTGTTGTTAACTACTaGGCCATCTCTCCCTCCAGG +
Preference number: 2 (lower is better)
Translates to: KMARTSSATSRRSLCSKASVVNY*AISPSR
Trigger: CCTGGAGGGAGAGATGGCTCAGTAGTTAACAACACT...GGCCTTGGAACAGAGTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCATCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR TCA 90 bp TGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACAGATTGTCATGGTGCATACAGGTGGGTaGATTCCAGTGCCACCTGAG +
Preference number: 2 (lower is better)
Translates to: WGPEEGADPSELELQIVMVHTGG*IPVPPE
Trigger: CTCAGGTGGCACTGGAATTCACCCACCTGTATGCAC...CATGACAATCTGTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR TCA 90 bp TGCCCCGCTCAAAGGCTGCAAAGAACTTCTCACCCTCAAACATCTCCACAGTCTGGAGTCTCGGTAGCTTaGTGGGCAAGGTGGCCATCC +
Preference number: 2 (lower is better)
Translates to: CPAQRLQRTSHPQTSPQSGVSVA*WARWPS
Trigger: GGATGGCCACCTTGCCCATCAAGCTACCGAGACTCC...AGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCAGCCTTTGAGCGGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp AGGAGCAGAGAAGTGCTCCCTCTGGTGGCAAAAGGCAAGTGTTGGATACTGGGCCCTCCAGGCCTTCTCTaGTCCCATCTTAGCAGAAGG +
Preference number: 2 (lower is better)
Translates to: RSREVLPLVAKGKCWILGPPGLL*SHLSRR
Trigger: CCTTCTGCTAAGATGGGAGCAGAGAAGGCCTGGAGG...GCCCAGTATCCAACACTTGCCTTTTGCCACCAGAGGGAGCACTTCTCTGCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR GCA 90 bp TCAGCTCTAGTCCAGCCATATGCACTACCTGCATGGAGACTTGCCGAGGCTCTTGGAGGCAGGGGCAACTaGACAGTGACAGGTTGTAGG +
Preference number: 2 (lower is better)
Translates to: SALVQPYALPAWRLAEALGGRGN*TVTGCR
Trigger: CCTACAACCTGTCACTGTGCAGTTGCCCCTGCCTCC...AAGAGCCTCGGCAAGTCTCCATGCAGGTAGTGCATATGGCTGGACTAGAGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp GTGTTGGATACTGGGCGTAAAACGACCAGGAACCAGGAGAAGTGGGGCACCTGGCGTGACCTGGAAGCGTaGATACAGGTGGGTGAATTC +
Preference number: 2 (lower is better)
Translates to: VLDTGRKTTRNQEKWGTWRDLEA*IQVGEF
Trigger: GAATTCACCCACCTGTATGCACGCTTCCAGGTCACG...CCAGGTGCCCCACTTCTCCTGGTTCCTGGTCGTTTTACGCCCAGTATCCAACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp CTCGGTAGCTTGATGGGCAAGGTGGCCATCCACAGTGCATCTGTACCCTTCCTCCGTGACCTGGAAGCGTaGATACAGGTGGGTGAATTC +
Preference number: 2 (lower is better)
Translates to: LGSLMGKVAIHSASVPFLRDLEA*IQVGEF
Trigger: GAATTCACCCACCTGTATGCACGCTTCCAGGTCACG...GAGGAAGGGTACAGATGCACTGTGGATGGCCACCTTGCCCATCAAGCTACCGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp TGCAAAGAACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGGTTCAGGGCCTTCCGTGGCAGGCACTaGAGCAGAACCTGCTCAGGG +
Preference number: 2 (lower is better)
Translates to: CKELLTLKHLHSLRGFRAFRGRH*SRTCSG
Trigger: CCCTGAGCAGGTTCTGCTGCAGTGCCTGCCACGGAA...GGCCCTGAACCCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp ACAAAGCAGATTCTGCCATCCACACAGTCTGGACGGTCTGCATCTACATCAATGCTGCCGGGCAGCCTCTaGCTCTGCAGGTACCTCCAC +
Preference number: 2 (lower is better)
Translates to: TKQILPSTQSGRSASTSMLPGSL*LCRYLH
Trigger: GTGGAGGTACCTGCAGAGGCAGAGGCTGCCCGGCAG...CATTGATGTAGATGCAGACCGTCCAGACTGTGTGGATGGCAGAATCTGCTTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp TTCCAGTGCCACCTGAGTGGTGATATCATCCCAGGTGGTTGTCAGGGGTGTTCGTGGGTTTTTGTATGCTaGGGCACTGGAGCACACGGG +
Preference number: 2 (lower is better)
Translates to: FQCHLSGDIIPGGCQGCSWVFVC*GTGAHG
Trigger: CCCGTGTGCTCCAGTGCCCCAGCATACAAAAACCCA...CGAACACCCCTGACAACCACCTGGGATGATATCACCACTCAGGTGGCACTGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp AGATGGCACGCACCTCTTCAGCCACATCCCGCCGATCACTCTGTTCCAAGGCCTGAGAAGTGCTCCCTCTaGTGGCAAAAGGCAAGTGTT +
Preference number: 2 (lower is better)
Translates to: RWHAPLQPHPADHSVPRPEKCSL*WQKASV
Trigger: AACACTTGCCTTTTGCCACCAGAGGGAGCACTTCTC...AGGCCTTGGAACAGAGTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp ATGGCACGCACCTCTTCAGCCACATCCCGCCGATCACTCTGTTCCAAGGCCTGTGAGAAGTGCTCCCTCTaGTGGCAAAAGGCAAGTGTT +
Preference number: 2 (lower is better)
Translates to: MARTSSATSRRSLCSKACEKCSL*WQKASV
Trigger: AACACTTGCCTTTTGCCACCAGAGGGAGCACTTCTC...ACAGGCCTTGGAACAGAGTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp TGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACAGATTGTCATGCTGTCCTGGTACTTGTaGCGGCCAAGCTCCAAGATG +
Preference number: 2 (lower is better)
Translates to: WGPEEGADPSELELQIVMLSWYL*RPSSKM
Trigger: CATCTTGGAGCTTGGCCGCCACAAGTACCAGGACAG...CATGACAATCTGTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp GTGCCTCTTCCTCCAGTTGGGTCTCTAGGTCATTCCAGGTGTTGTTACTCCGTGAAGCCGAGTGATCAGTaGCAGGTGGACCAGGCCAGT +
Preference number: 2 (lower is better)
Translates to: VPLPPVGSLGHSRCCYSVKPSDQ*QVDQAS
Trigger: ACTGGCCTGGTCCACCTGCCACTGATCACTCGGCTT...CACGGAGTAACAACACCTGGAATGACCTAGAGACCCAACTGGAGGAAGAGGCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CAA 90 bp TTGGGTGCCTCTTCCTCCAGTTGGGTCTCTAGGTCATTCCAGGTGTaGTTACTCCGTGTCCTCACAACTACCTCACGACAGCGACGGACT +
Preference number: 2 (lower is better)
Translates to: LGASSSSWVSRSFQV*LLRVLTTTSRQRRT
Trigger: AGTCCGTCGCTGTCGTGAGGTAGTTGTGAGGACACGGAGTAACAACACCTGGAATGACCTAGAGACCCAACTGGAGGAAGAGGCACCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp TCTTGGGTGCCTCTTCCTCCAGTTGGGTCTCTAGGTCATTCCAGGTGTTGTTACGCCAGAGGAAGGGGCTaGCCCTTCAGAACTGGAGTT +
Preference number: 2 (lower is better)
Translates to: SWVPLPPVGSLGHSRCCYARGRG*PFRTGV
Trigger: AACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGC...GTAACAACACCTGGAATGACCTAGAGACCCAACTGGAGGAAGAGGCACCCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR TCA 90 bp TTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTGGGGCAACTGCACAGTaGCAGGTTGTAGGAAGCTGG +
Preference number: 2 (lower is better)
Translates to: LAEGPGMVASMGNLLSILGATAQ*QVVGSW
Trigger: CCAGCTTCCTACAACCTGTCACTGTGCAGTTGCCCC...AAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR TCA 90 bp AAAGAACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGGTTCAGGGCCACGGGGGCAACTGCACAGTaGCAGGTTGTAGGAAGCTGG +
Preference number: 2 (lower is better)
Translates to: KELLTLKHLHSLRGFRATGATAQ*QVVGSW
Trigger: CCAGCTTCCTACAACCTGTCACTGTGCAGTTGCCCC...CGTGGCCCTGAACCCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp CAATGCCCCGCTCAAAGGCTGCAAAGAACTTCTCACCCTCAAACATCTCCACAGCCAGAGCCTCTTGGGTaGCTCTTCCTCCAGTTGGGT +
Preference number: 2 (lower is better)
Translates to: QCPAQRLQRTSHPQTSPQPEPLG*LFLQLG
Trigger: ACCCAACTGGAGGAAGAGGCACCCAAGAGGCTCTGG...CTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCAGCCTTTGAGCGGGGCATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp GGTGCCTCTTCCTCCAGTTGGGTCTCTAGGTCATTCCAGGTGTTGTTACTCCGTTGGGTTTTTGTATGCTaGGGCACTGGAGCACACGGG +
Preference number: 2 (lower is better)
Translates to: GASSSSWVSRSFQVLLLRWVFVC*GTGAHG
Trigger: CCCGTGTGCTCCAGTGCCCCAGCATACAAAAACCCA...ACGGAGTAACAACACCTGGAATGACCTAGAGACCCAACTGGAGGAAGAGGCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp CAAAGAGCAGCCATAAGCTCACATCTTGCTGGAAAGCCACCCCATGGGGCTGCAGCCTCTTCCTCCAGTTaGGTCTCTAGGTCATTCCAG +
Preference number: 2 (lower is better)
Translates to: QRAAISSHLAGKPPHGAAASSSS*VSRSFQ
Trigger: CTGGAATGACCTAGAGACCCAACTGGAGGAAGAGGC...TGCAGCCCCATGGGGTGGCTTTCCAGCAAGATGTGAGCTTATGGCTGCTCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp CAATGCCCCGCTCAAAGGCTGCAAAGAACTTCTCACCCTCAAACATCTCCACAGACCAGGAGAAGTGCGTaGCCTGGAAGCGTGCATACA +
Preference number: 2 (lower is better)
Translates to: QCPAQRLQRTSHPQTSPQTRRSA*PGSVHT
Trigger: TGTATGCACGCTTCCAGGTCACGCACTTCTCCTGGT...CTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCAGCCTTTGAGCGGGGCATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp GGCACAGCAGAGGGCTTACTGATGCCTCTGATTCTTCCAGAAGGGTTCTCAGCTGCCTGCATACTTGTCTaGACACATGTGTGCCTGGTG +
Preference number: 2 (lower is better)
Translates to: GTAEGLLMPLILPEGFSAACILV*THVCLV
Trigger: CACCAGGCACACATGTGTGCAGACAAGTATGCAGGC...AGCTGAGAACCCTTCTGGAAGAATCAGAGGCATCAGTAAGCCCTCTGCTGTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190068.7
3UTR-3UTR GCA 90 bp CCCGCTCAAAGGCTGCAAAGAACTTCTCACCCTCAAACATCTCCACAGTCTCAGTCGGCGCCTCTGCAGTaGAATGAGATTCACACGGTG +
Preference number: 2 (lower is better)
Translates to: PAQRLQRTSHPQTSPQSQSAPLQ*NEIHTV
Trigger: CACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGA...CTGAGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCAGCCTTTGAGCGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp ACAAAGCAGATTCTGCCATCCACACAGTCTGGACGGTCTGCATCTACATCAATGTCTGTACCCTTCCTCTaGCGGGCAGCCTCTGCCTCT +
Preference number: 2 (lower is better)
Translates to: TKQILPSTQSGRSASTSMSVPFL*RAASAS
Trigger: AGAGGCAGAGGCTGCCCGGCAGAGGAAGGGTACAGA...CATTGATGTAGATGCAGACCGTCCAGACTGTGTGGATGGCAGAATCTGCTTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp TTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAACGGGCTAGACAGTGAGTaGGTTTTTGTATGCTGGGGC +
Preference number: 2 (lower is better)
Translates to: FSAPILAEGPGMVASMGNGLDSE*VFVCWG
Trigger: GCCCCAGCATACAAAAACCCACTCACTGTCTAGCCC...GTTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp GGTGCCTCTTCCTCCAGTTGGGTCTCTAGGTCATTCCAGGTGTTGTTACTCCGTCTTAGCAGAAGGGCCTaGCATGGTAGCAAGTATGGG +
Preference number: 2 (lower is better)
Translates to: GASSSSWVSRSFQVLLLRLSRRA*HGSKYG
Trigger: CCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAG...ACGGAGTAACAACACCTGGAATGACCTAGAGACCCAACTGGAGGAAGAGGCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp CATCTCTCCCTCCAGGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGCAAAAGGCAAGTGTTaGATACTGGGCGTAAAACGA +
Preference number: 2 (lower is better)
Translates to: HLSLQAFSAPILAEGPGMAKGKC*ILGVKR
Trigger: TCGTTTTACGCCCAGTATCCAACACTTGCCTTTTGC...CATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTGGAGGGAGAGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR TCA 90 bp GCTCAAAGGCTGCAAAGAACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGGTGCATACAGGTGGGTaGATTCCAGTGCCACCTGAG +
Preference number: 2 (lower is better)
Translates to: AQRLQRTSHPQTSPQSQRVHTGG*IPVPPE
Trigger: CTCAGGTGGCACTGGAATTCACCCACCTGTATGCAC...CCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCAGCCTTTGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp AGAGGGCTTACTGATGCCTCTGATTCTTCCAGAAGGGTTCTCAGCTCTAGTCCACTAAGCAGGAAGTCATaGGGTCCCAGAGAGACCAGG +
Preference number: 2 (lower is better)
Translates to: RGLTDASDSSRRVLSSSPLSRKS*GPRETR
Trigger: CCTGGTCTCTCTGGGACCTCATGACTTCCTGCTTAG...TGGACTAGAGCTGAGAACCCTTCTGGAAGAATCAGAGGCATCAGTAAGCCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp CTGAAGGAGCAGCTAGTGTTGTTAACTACTGAGCCATCTCTCCCTCCAGGCCTTCTTAGCAGAAGGGCCTaGCATGGTAGCAAGTATGGG +
Preference number: 2 (lower is better)
Translates to: LKEQLVLLTTEPSLPPGLLSRRA*HGSKYG
Trigger: CCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAG...AAGGCCTGGAGGGAGAGATGGCTCAGTAGTTAACAACACTAGCTGCTCCTTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp TGCCCCGCTCAAAGGCTGCAAAGAACTTCTCACCCTCAAACATCTCCACAGTCTCTTAGCAGAAGGGCCTaGCATGGTAGCAAGTATGGG +
Preference number: 2 (lower is better)
Translates to: CPAQRLQRTSHPQTSPQSLSRRA*HGSKYG
Trigger: CCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAG...AGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCAGCCTTTGAGCGGGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp TGCCCCGCTCAAAGGCTGCAAAGAACTTCTCACCCTCAAACATCTCCACAGTCTAAGCGTGCATACAGGTaGGTGAATTCCAGTGCCACC +
Preference number: 2 (lower is better)
Translates to: CPAQRLQRTSHPQTSPQSKRAYR*VNSSAT
Trigger: GGTGGCACTGGAATTCACCCACCTGTATGCACGCTT...AGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCAGCCTTTGAGCGGGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp CAATGCCCCGCTCAAAGGCTGCAAAGAACTTCTCACCCTCAAACATCTCCACAGCCCCCACACAGGTTTTaGTGGTATACCAGAGCCAGT +
Preference number: 2 (lower is better)
Translates to: QCPAQRLQRTSHPQTSPQPPHRF*WYTRAS
Trigger: ACTGGCTCTGGTATACCACCAAAACCTGTGTGGGGG...CTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCAGCCTTTGAGCGGGGCATTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp AAAGAACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGGTTCAGGGCCACGGCTTGGGCTAGACAGTaGGTGGGTTTTTGTATGCTG +
Preference number: 2 (lower is better)
Translates to: KELLTLKHLHSLRGFRATAWARQ*VGFCML
Trigger: CAGCATACAAAAACCCACTCACTGTCTAGCCCAAGC...CGTGGCCCTGAACCCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR TCA 90 bp TGCATCACCCAGGTTCAGAGGCATCAAGGAGAAGTCAGTCCCCTGCCCACTCCCTACGTTCTTCAGGTGTaGATAGAAGACAAAGCAGAT +
Preference number: 2 (lower is better)
Translates to: CITQVQRHQGEVSPLPTPYVLQV*IEDKAD
Trigger: ATCTGCTTTGTCTTCTATTCACACCTGAAGAACGTA...GGGAGTGGGCAGGGGACTGACTTCTCCTTGATGCCTCTGAACCTGGGTGATGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp AAAGGCAAGTGTTGGATACTGGGCGTAAAACGACCAGGAACCAGGAGAAGTGGGGTGGGTGAATTCCAGTaGCACCTGAGTGGTGATATC +
Preference number: 2 (lower is better)
Translates to: KGKCWILGVKRPGTRRSGVGEFQ*HLSGDI
Trigger: GATATCACCACTCAGGTGGCACTGGAATTCACCCAC...CCCACTTCTCCTGGTTCCTGGTCGTTTTACGCCCAGTATCCAACACTTGCCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp AAAGAACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGGTTCAGGGCCACGGTGGGTGAATTCCAGTaGCACCTGAGTGGTGATATC +
Preference number: 2 (lower is better)
Translates to: KELLTLKHLHSLRGFRATVGEFQ*HLSGDI
Trigger: GATATCACCACTCAGGTGGCACTGGAATTCACCCAC...CGTGGCCCTGAACCCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp TCAGAACTGGAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGAAACAAACACTGCAGCAGAACCTaGTCAGGGTCTCGGCGCCTC +
Preference number: 2 (lower is better)
Translates to: SELELQIVMSHQVGRGNKHCSRT*SGSRRL
Trigger: GAGGCGCCGAGACCCTGAGCAGGTTCTGCTGCAGTG...TTTGTTTCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTCCAGTTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CCA 90 bp CGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCCTAGGCCTGTGCAGAGAGAAGTGGGGCACCTaGCAGCGAGCCCAGAGCCTC +
Preference number: 2 (lower is better)
Translates to: RVKFKAILIKSVSLGLCREKWGT*QRAQSL
Trigger: GAGGCTCTGGGCTCGCTGCCAGGTGCCCCACTTCTC...TCTGCACAGGCCTAGGCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp GTTGCTCTGAGTCAGGAATCCAGTTTCTGCATCACCCAGGTTCAGAGGCATCAAGTGGGTGAATTCCAGTaGCACCTGAGTGGTGATATC +
Preference number: 2 (lower is better)
Translates to: VALSQESSFCITQVQRHQVGEFQ*HLSGDI
Trigger: GATATCACCACTCAGGTGGCACTGGAATTCACCCAC...TTGATGCCTCTGAACCTGGGTGATGCAGAAACTGGATTCCTGACTCAGAGCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp TCTTCAGGTGTGAATAGAAGACAAAGCAGATTCTGCCATCCACACAGTCTGGACGGTGGCCATCCACAGTaGATCTGTACCCTTCCTCTG +
Preference number: 2 (lower is better)
Translates to: SSGVNRRQSRFCHPHSLDGGHPQ*ICTLPL
Trigger: CAGAGGAAGGGTACAGATGCACTGTGGATGGCCACC...GTCCAGACTGTGTGGATGGCAGAATCTGCTTTGTCTTCTATTCACACCTGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CCA 90 bp GCTCAAAGGCTGCAAAGAACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGCCACACAGGTTTTGGTaGTATACCAGAGCCAGTACC +
Preference number: 2 (lower is better)
Translates to: AQRLQRTSHPQTSPQSQRPHRFW*YTRAST
Trigger: GGTACTGGCTCTGGTATACCACCAAAACCTGTGTGG...CCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCAGCCTTTGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp CAGGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGTACGTTCTTCAGGTGTaGATAGAAGACAAAGCAGAT +
Preference number: 2 (lower is better)
Translates to: QAFSAPILAEGPGMVASMYVLQV*IEDKAD
Trigger: ATCTGCTTTGTCTTCTATTCACACCTGAAGAACGTA...CATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR TCA 90 bp GGGCCTGGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTTATGTAAAACTCAGCAGGTTGCTCTaGGTCAGGAATCCAGTTTCT +
Preference number: 2 (lower is better)
Translates to: GPGMVASMGNLLSILYVKLSRLL*VRNPVS
Trigger: AGAAACTGGATTCCTGACTCAGAGCAACCTGCTGAG...TTTTACATAAAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR GCA 90 bp AAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCCTAGGCCTGTGCAGACTCTGGGTCTGCACACATGTGTaGCTGGTGTCTGTGGGGGCC +
Preference number: 2 (lower is better)
Translates to: KFKAILIKSVSLGLCRLWVCTHV*LVSVGA
Trigger: GGCCCCCACAGACACCAGGCACACATGTGTGCAGAC...CCAGAGTCTGCACAGGCCTAGGCTTACAGACTTAATTAAGATAGCTTTAAACTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR GCA 90 bp GTTGCTCTGAGTCAGGAATCCAGTTTCTGCATCACCCAGGTTCAGAGGCATCAAAGACAAAGCAGATTCTaGCATCCACACAGTCTGGAC +
Preference number: 2 (lower is better)
Translates to: VALSQESSFCITQVQRHQRQSRF*HPHSLD
Trigger: GTCCAGACTGTGTGGATGGCAGAATCTGCTTTGTCT...TTGATGCCTCTGAACCTGGGTGATGCAGAAACTGGATTCCTGACTCAGAGCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR TCA 90 bp TCTTCAGGTGTGAATAGAAGACAAAGCAGATTCTGCCATCCACACAGTCTGGACAATTCCAGTGCCACCTaGGTGGTGATATCATCCCAG +
Preference number: 2 (lower is better)
Translates to: SSGVNRRQSRFCHPHSLDNSSAT*VVISSQ
Trigger: CTGGGATGATATCACCACTCAGGTGGCACTGGAATT...GTCCAGACTGTGTGGATGGCAGAATCTGCTTTGTCTTCTATTCACACCTGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR GCA 90 bp GGGCCTGGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTTATGTAAAAAGACAAAGCAGATTCTaGCATCCACACAGTCTGGAC +
Preference number: 2 (lower is better)
Translates to: GPGMVASMGNLLSILYVKRQSRF*HPHSLD
Trigger: GTCCAGACTGTGTGGATGGCAGAATCTGCTTTGTCT...TTTTACATAAAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGGCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR GCA 90 bp TTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTTTTGTATGGATGTTTTaGCTGCATACTTGTCTGCAC +
Preference number: 2 (lower is better)
Translates to: LAEGPGMVASMGNLLSILFVWMF*LHTCLH
Trigger: GTGCAGACAAGTATGCAGGCAAAACATCCATACAAA...AAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR TCA 90 bp AAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCCTAGGCCTGTGCAGACTCTGGAATTCCAGTGCCACCTaGGTGGTGATATCATCCCAG +
Preference number: 2 (lower is better)
Translates to: KFKAILIKSVSLGLCRLWNSSAT*VVISSQ
Trigger: CTGGGATGATATCACCACTCAGGTGGCACTGGAATT...CCAGAGTCTGCACAGGCCTAGGCTTACAGACTTAATTAAGATAGCTTTAAACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 72 bp TCTCGGCGCCTCTGCAGTGCAATGAGATTCACACGGTaGAGTCGCAGCCGTTCCCAGGCCTTCCGGGCCAGG +
Preference number: 3 (lower is better)
Translates to: SRRLCSAMRFTR*SRSRSQAFRAR
Trigger: CCTGGCCCGGAAGGCCTGGGAACGGCTGCGACTGCACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 72 bp GGGGGTGCTGGAGAGGCCTCGCCCAGAGGGTTCCCCTaGAGGCGCACAAAGGGAGCGTCTAGTAACTCAGCA +
Preference number: 3 (lower is better)
Translates to: GGAGEASPRGFP*RRTKGASSNSA
Trigger: TGCTGAGTTACTAGACGCTCCCTTTGTGCGCCTGCAGGGGAACCCTCTGGGCGAGGCCTCTCCAGCACCCCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR TCA 72 bp GCCCACTCCCCTGGGCACCCCGGAGTCTCGGTAGCTTaGTGGGCAAGGTGGCCATCCACAGTGCATCTGTAC +
Preference number: 3 (lower is better)
Translates to: AHSPGHPGVSVA*WARWPSTVHLY
Trigger: GTACAGATGCACTGTGGATGGCCACCTTGCCCATCAAGCTACCGAGACTCCGGGGTGCCCAGGGGAGTGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 72 bp CTCAGGGTGGCATCTACCTTGTTCCGTGGCAGGCACTaGAGCAGAACCTGCTCAGGGTCTCGGCGCCTCTGC +
Preference number: 3 (lower is better)
Translates to: LRVASTLFRGRH*SRTCSGSRRLC
Trigger: GCAGAGGCGCCGAGACCCTGAGCAGGTTCTGCTGCAGTGCCTGCCACGGAACAAGGTAGATGCCACCCTGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 72 bp CAGGGCCACGGTAGCGAACCAGCAGCCGACTCAGGGTaGCATCTACCTTGTTCCGTGGCAGGCACTGCAGCA +
Preference number: 3 (lower is better)
Translates to: QGHGSEPAADSG*HLPCSVAGTAA
Trigger: TGCTGCAGTGCCTGCCACGGAACAAGGTAGATGCCACCCTGAGTCGGCTGCTGGTTCGCTACCGTGGCCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 72 bp TCCTCAGGGGCCAGCCCTGTGCGTCGAATGCTGTCCTaGTACTTGTGGCGGCCAAGCTCCAAGATGGCACGC +
Preference number: 3 (lower is better)
Translates to: SSGASPVRRMLS*YLWRPSSKMAR
Trigger: GCGTGCCATCTTGGAGCTTGGCCGCCACAAGTACCAGGACAGCATTCGACGCACAGGGCTGGCCCCTGAGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 72 bp GGGCATTTCTGGAACCTGGGATATGTCTGGGGGACTTaGGGGTGCTGGAGAGGCCTCGCCCAGAGGGTTCCC +
Preference number: 3 (lower is better)
Translates to: GHFWNLGYVWGT*GCWRGLAQRVP
Trigger: GGGAACCCTCTGGGCGAGGCCTCTCCAGCACCCCCAAGTCCCCCAGACATATCCCAGGTTCCAGAAATGCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR TCA 72 bp GAACCTGCTCAGGGTCTCGGCGCCTCTGCAGTGCAATaGGATTCACACGGTGCAGTCGCAGCCGTTCCCAGG +
Preference number: 3 (lower is better)
Translates to: EPAQGLGASAVQ*DSHGAVAAVPR
Trigger: CCTGGGAACGGCTGCGACTGCACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGACCCTGAGCAGGTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 72 bp CGTAAAACGACCAGGAACCAGGAGAAGTGGGGCACCTaGCAGCGAGCCCAGAGCCTCTTGGGTGCCTCTTCC +
Preference number: 3 (lower is better)
Translates to: RKTTRNQEKWGT*QRAQSLLGASS
Trigger: GGAAGAGGCACCCAAGAGGCTCTGGGCTCGCTGCCAGGTGCCCCACTTCTCCTGGTTCCTGGTCGTTTTACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 72 bp CAGCAGCCGACTCAGGGTGGCATCTACCTTGTTCCGTaGCAGGCACTGCAGCAGAACCTGCTCAGGGTCTCG +
Preference number: 3 (lower is better)
Translates to: QQPTQGGIYLVP*QALQQNLLRVS
Trigger: CGAGACCCTGAGCAGGTTCTGCTGCAGTGCCTGCCACGGAACAAGGTAGATGCCACCCTGAGTCGGCTGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR TCA 72 bp GGCCTGGCTCGGGCAACCAGAGTCGATAGTGGATGGTaGCAGGCGTGGTGGTGGCTCCTGCTGGAAACTGTA +
Preference number: 3 (lower is better)
Translates to: GLARATRVDSGW*QAWWWLLLETV
Trigger: TACAGTTTCCAGCAGGAGCCACCACCACGCCTGTCACCATCCACTATCGACTCTGGTTGCCCGAGCCAGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR TCA 72 bp GGCTGCAGCTCCAGGACACTACTAAGCAGGAAGTCATaGGGTCCCAGAGAGACCAGGCCTGGCTCGGGCAAC +
Preference number: 3 (lower is better)
Translates to: GCSSRTLLSRKS*GPRETRPGSGN
Trigger: GTTGCCCGAGCCAGGCCTGGTCTCTCTGGGACCTCATGACTTCCTGCTTAGTAGTGTCCTGGAGCTGCAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 72 bp CAGCAGAACCTGCTCAGGGTCTCGGCGCCTCTGCAGTaGAATGAGATTCACACGGTGCAGTCGCAGCCGTTC +
Preference number: 3 (lower is better)
Translates to: QQNLLRVSAPLQ*NEIHTVQSQPF
Trigger: GAACGGCTGCGACTGCACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGACCCTGAGCAGGTTCTGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 72 bp CACTGCAGCAGAACCTGCTCAGGGTCTCGGCGCCTCTaGAGTGCAATGAGATTCACACGGTGCAGTCGCAGC +
Preference number: 3 (lower is better)
Translates to: HCSRTCSGSRRL*SAMRFTRCSRS
Trigger: GCTGCGACTGCACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGACCCTGAGCAGGTTCTGCTGCAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 72 bp GATACTGGGCGTAAAACGACCAGGAACCAGGAGAAGTaGGGCACCTGGCAGCGAGCCCAGAGCCTCTTGGGT +
Preference number: 3 (lower is better)
Translates to: DTGRKTTRNQEK*GTWQRAQSLLG
Trigger: ACCCAAGAGGCTCTGGGCTCGCTGCCAGGTGCCCCACTTCTCCTGGTTCCTGGTCGTTTTACGCCCAGTATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 72 bp TGCTGTCCTGGTACTTGTGGCGGCCAAGCTCCAAGATaGCACGCACCTCTTCAGCCACATCCCGCCGATCAC +
Preference number: 3 (lower is better)
Translates to: CCPGTCGGQAPR*HAPLQPHPADH
Trigger: GTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCATCTTGGAGCTTGGCCGCCACAAGTACCAGGACAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 72 bp GCCAGCCCTGTGCGTCGAATGCTGTCCTGGTACTTGTaGCGGCCAAGCTCCAAGATGGCACGCACCTCTTCA +
Preference number: 3 (lower is better)
Translates to: ASPVRRMLSWYL*RPSSKMARTSS
Trigger: TGAAGAGGTGCGTGCCATCTTGGAGCTTGGCCGCCACAAGTACCAGGACAGCATTCGACGCACAGGGCTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 72 bp TCTACCTTGTTCCGTGGCAGGCACTGCAGCAGAACCTaGTCAGGGTCTCGGCGCCTCTGCAGTGCAATGAGA +
Preference number: 3 (lower is better)
Translates to: STLFRGRHCSRT*SGSRRLCSAMR
Trigger: TCTCATTGCACTGCAGAGGCGCCGAGACCCTGAGCAGGTTCTGCTGCAGTGCCTGCCACGGAACAAGGTAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CAA 90 bp GTGGCGGCCAAGCTCCAAGATGGCACGCACCTCTTCAGCCACATCCCGCCGATCGTTTTGCCTGCATACTaGTCTGCACACATGTGTGCC +
Preference number: 3 (lower is better)
Translates to: VAAKLQDGTHLFSHIPPIVLPAY*SAHMCA
Trigger: GGCACACATGTGTGCAGACAAGTATGCAGGCAAAAC...GATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCATCTTGGAGCTTGGCCGCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR TCA 72 bp TGGGTTTTTGTATGCTGGGGCACTGGAGCACACGGGTaGGGTAGAAGGATAGGGCTCTGCCCACTGGTCGAG +
Preference number: 3 (lower is better)
Translates to: WVFVCWGTGAHG*GRRIGLCPLVE
Trigger: CTCGACCAGTGGGCAGAGCCCTATCCTTCTACCTCACCCGTGTGCTCCAGTGCCCCAGCATACAAAAACCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR CCA 72 bp AAGCAGGAAGTCATGAGGTCCCAGAGAGACCAGGCCTaGCTCGGGCAACCAGAGTCGATAGTGGATGGTGAC +
Preference number: 3 (lower is better)
Translates to: KQEVMRSQRDQA*LGQPESIVDGD
Trigger: GTCACCATCCACTATCGACTCTGGTTGCCCGAGCCAGGCCTGGTCTCTCTGGGACCTCATGACTTCCTGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CAA 90 bp CATCTCTCCCTCCAGGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGACAGTGAGTGGGTTTTaGTATGCTGGGGCACTGGAG +
Preference number: 3 (lower is better)
Translates to: HLSLQAFSAPILAEGPGMTVSGF*YAGALE
Trigger: CTCCAGTGCCCCAGCATACAAAAACCCACTCACTGT...CATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTGGAGGGAGAGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CAA 90 bp ATGGCACGCACCTCTTCAGCCACATCCCGCCGATCACTCTGTTCCAAGGCCTGTTATCATCCCAGGTGGTaGTCAGGGGTGTTCGGTAGA +
Preference number: 3 (lower is better)
Translates to: MARTSSATSRRSLCSKACYHPRW*SGVFGR
Trigger: TCTACCGAACACCCCTGACAACCACCTGGGATGATA...ACAGGCCTTGGAACAGAGTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CAA 90 bp CAGGAGAAGTGCGTGACCTGGAAGCGTGCATACAGGTGGGTGAATTCCAGTGCCACTGAGGTCAGGAGGTaGCTGTGCAGAACAAGGAGC +
Preference number: 3 (lower is better)
Translates to: QEKCVTWKRAYRWVNSSATEVRR*LCRTRS
Trigger: GCTCCTTGTTCTGCACAGCAACCTCCTGACCTCAGT...GGCACTGGAATTCACCCACCTGTATGCACGCTTCCAGGTCACGCACTTCTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190882.7
3UTR TCA 72 bp GGCAGCCTCTGCCTCTGCAGGTACCTCCACAGGAAGTaGACCCCGATAAAAGGACACCTGTCCTCGAACATC +
Preference number: 3 (lower is better)
Translates to: GSLCLCRYLHRK*TPIKGHLSSNI
Trigger: GATGTTCGAGGACAGGTGTCCTTTTATCGGGGTTCACTTCCTGTGGAGGTACCTGCAGAGGCAGAGGCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 72 bp GAGCCAGTACCAGGAGAAGTGCGTGACCTGGAAGCGTaGATACAGGTGGGTGAATTCCAGTGCCACCTGAGT +
Preference number: 3 (lower is better)
Translates to: EPVPGEVRDLEA*IQVGEFQCHLS
Trigger: ACTCAGGTGGCACTGGAATTCACCCACCTGTATGCACGCTTCCAGGTCACGCACTTCTCCTGGTACTGGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 72 bp TGGCGCTCAGCCCAAGAGAAGAGCATGTGTCGGACCTaGCCATCCAGGTCATCCCTGAATTCATGCCGGATA +
Preference number: 3 (lower is better)
Translates to: WRSAQEKSMCRT*PSRSSLNSCRI
Trigger: TATCCGGCATGAATTCAGGGATGACCTGGATGGCCAGGTCCGACACATGCTCTTCTCTTGGGCTGAGCGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 72 bp TCTGAGGTCAGCAATAGCCTGGGCATTTCTGGAACCTaGGATATGTCTGGGGGACTTGGGGGTGCTGGAGAG +
Preference number: 3 (lower is better)
Translates to: SEVSNSLGISGT*DMSGGLGGAGE
Trigger: CTCTCCAGCACCCCCAAGTCCCCCAGACATATCCCAGGTTCCAGAAATGCCCAGGCTATTGCTGACCTCAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 72 bp TTAACTACTGAGCCATCTCTCCCTCCAGGCCTTCTCTaGTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGC +
Preference number: 3 (lower is better)
Translates to: LTTEPSLPPGLL*SHLSRRAWHGS
Trigger: GCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTGGAGGGAGAGATGGCTCAGTAGTTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR CCA 72 bp CCAGGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTaGCATGGTAGCAAGTATGGGCAACCTGCTCTCTAT +
Preference number: 3 (lower is better)
Translates to: PGLLCSHLSRRA*HGSKYGQPALY
Trigger: ATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR CCA 72 bp GTATACCAGAGCCAGTACCAGGAGAAGTGCGTGACCTaGAAGCGTGCATACAGGTGGGTGAATTCCAGTGCC +
Preference number: 3 (lower is better)
Translates to: VYQSQYQEKCVT*KRAYRWVNSSA
Trigger: GGCACTGGAATTCACCCACCTGTATGCACGCTTCCAGGTCACGCACTTCTCCTGGTACTGGCTCTGGTATAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 72 bp AGCCATAAGCTCACATCTTGCTGGAAAGCCACCCCATaGGGCTGCAGCTCCAGGACACTACTAAGCAGGAAG +
Preference number: 3 (lower is better)
Translates to: SHKLTSCWKATP*GCSSRTLLSRK
Trigger: CTTCCTGCTTAGTAGTGTCCTGGAGCTGCAGCCCCATGGGGTGGCTTTCCAGCAAGATGTGAGCTTATGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR TCA 72 bp AAGCGTGCATACAGGTGGGTGAATTCCAGTGCCACCTaGGTGGTGATATCATCCCAGGTGGTTGTCAGGGGT +
Preference number: 3 (lower is better)
Translates to: KRAYRWVNSSAT*VVISSQVVVRG
Trigger: ACCCCTGACAACCACCTGGGATGATATCACCACTCAGGTGGCACTGGAATTCACCCACCTGTATGCACGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR TCA 72 bp AGAGCATGTGTCGGACCTGGCCATCCAGGTCATCCCTaGATTCATGCCGGATACGCTGTAGCTTATGGTAGG +
Preference number: 3 (lower is better)
Translates to: RACVGPGHPGHP*IHAGYAVAYGR
Trigger: CCTACCATAAGCTACAGCGTATCCGGCATGAATTCAGGGATGACCTGGATGGCCAGGTCCGACACATGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 72 bp GACCTGGAAGCGTGCATACAGGTGGGTGAATTCCAGTaGCACCTGAGTGGTGATATCATCCCAGGTGGTTGT +
Preference number: 3 (lower is better)
Translates to: DLEACIQVGEFQ*HLSGDIIPGGC
Trigger: ACAACCACCTGGGATGATATCACCACTCAGGTGGCACTGGAATTCACCCACCTGTATGCACGCTTCCAGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CAA 90 bp GTGCCTCTTCCTCCAGTTGGGTCTCTAGGTCATTCCAGGTGTTGTTACTCCGTGACAGTGAGTGGGTTTTaGTATGCTGGGGCACTGGAG +
Preference number: 3 (lower is better)
Translates to: VPLPPVGSLGHSRCCYSVTVSGF*YAGALE
Trigger: CTCCAGTGCCCCAGCATACAAAAACCCACTCACTGT...CACGGAGTAACAACACCTGGAATGACCTAGAGACCCAACTGGAGGAAGAGGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CAA 90 bp CACCTCTTCAGCCACATCCCGCCGATCACTCTGTTCCAAGGCCTGTACCAGGTGAAGGAGCAGCTAGTGTaGTTAACTACTGAGCCATCT +
Preference number: 3 (lower is better)
Translates to: HLFSHIPPITLFQGLYQVKEQLV*LTTEPS
Trigger: AGATGGCTCAGTAGTTAACAACACTAGCTGCTCCTT...CACCTGGTACAGGCCTTGGAACAGAGTGATCGGCGGGATGTGGCTGAAGAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CAA 90 bp GTGCCTCTTCCTCCAGTTGGGTCTCTAGGTCATTCCAGGTGTTGTTACTCCGTGTATCATCCCAGGTGGTaGTCAGGGGTGTTCGGTAGA +
Preference number: 3 (lower is better)
Translates to: VPLPPVGSLGHSRCCYSVYHPRW*SGVFGR
Trigger: TCTACCGAACACCCCTGACAACCACCTGGGATGATA...CACGGAGTAACAACACCTGGAATGACCTAGAGACCCAACTGGAGGAAGAGGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 72 bp TCTTCCAGAAGGGTTCTCAGCTCTAGTCCAGCCATATaGACTACCTGCATGGAGACTTGCCGAGGCTCTTCT +
Preference number: 3 (lower is better)
Translates to: SSRRVLSSSPAI*TTCMETCRGSS
Trigger: AGAAGAGCCTCGGCAAGTCTCCATGCAGGTAGTGCATATGGCTGGACTAGAGCTGAGAACCCTTCTGGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 72 bp AGAGAAGTGCTCCCTCTGGTGGCAAAAGGCAAGTGTTaGATACTGGGCGTAAAACGACCAGGAACCAGGAGA +
Preference number: 3 (lower is better)
Translates to: REVLPLVAKGKC*ILGVKRPGTRR
Trigger: TCTCCTGGTTCCTGGTCGTTTTACGCCCAGTATCCAACACTTGCCTTTTGCCACCAGAGGGAGCACTTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR CCA 72 bp CAAGGAAGCTGTCCAAATCTGAGGTCAGCAATAGCCTaGGCATTTCTGGAACCTGGGATATGTCTGGGGGAC +
Preference number: 3 (lower is better)
Translates to: QGSCPNLRSAIA*AFLEPGICLGD
Trigger: GTCCCCCAGACATATCCCAGGTTCCAGAAATGCCCAGGCTATTGCTGACCTCAGATTTGGACAGCTTCCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CAA 90 bp AACAGCCATGGGGAGTCACAAGGAAGCTGTCCAAATCTGAGGTCAGCAATAGCCACAGTGAGTGGGTTTTaGTATGCTGGGGCACTGGAG +
Preference number: 3 (lower is better)
Translates to: NSHGESQGSCPNLRSAIATVSGF*YAGALE
Trigger: CTCCAGTGCCCCAGCATACAAAAACCCACTCACTGT...GGCTATTGCTGACCTCAGATTTGGACAGCTTCCTTGTGACTCCCCATGGCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000190068.7
3UTR-3UTR CAA 90 bp TCAGCTCTAGTCCAGCCATATGCACTACCTGCATGGAGACTTGCCGAGGCTCTTGTTTTGCCTGCATACTaGTCTGCACACATGTGTGCC +
Preference number: 3 (lower is better)
Translates to: SALVQPYALPAWRLAEALVLPAY*SAHMCA
Trigger: GGCACACATGTGTGCAGACAAGTATGCAGGCAAAAC...AAGAGCCTCGGCAAGTCTCCATGCAGGTAGTGCATATGGCTGGACTAGAGCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190068.7
3UTR-3UTR CAA 90 bp GTTGCTCTGAGTCAGGAATCCAGTTTCTGCATCACCCAGGTTCAGAGGCATCAATATCATCCCAGGTGGTaGTCAGGGGTGTTCGGTAGA +
Preference number: 3 (lower is better)
Translates to: VALSQESSFCITQVQRHQYHPRW*SGVFGR
Trigger: TCTACCGAACACCCCTGACAACCACCTGGGATGATA...TTGATGCCTCTGAACCTGGGTGATGCAGAAACTGGATTCCTGACTCAGAGCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 72 bp AAAGCAGATTCTGCCATCCACACAGTCTGGACGGTCTaGATCTACATCAATGCCCCGCTCAAAGGCTGCAAA +
Preference number: 3 (lower is better)
Translates to: KADSAIHTVWTV*IYINAPLKGCK
Trigger: TTTGCAGCCTTTGAGCGGGGCATTGATGTAGATGCAGACCGTCCAGACTGTGTGGATGGCAGAATCTGCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 72 bp ACTCAGCAGGTTGCTCTGAGTCAGGAATCCAGTTTCTaGATCACCCAGGTTCAGAGGCATCAAGGAGAAGTC +
Preference number: 3 (lower is better)
Translates to: TQQVALSQESSF*ITQVQRHQGEV
Trigger: GACTTCTCCTTGATGCCTCTGAACCTGGGTGATGCAGAAACTGGATTCCTGACTCAGAGCAACCTGCTGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CAA 90 bp CGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCCTAGGCCTGTGCAGAAGGTCTCGGAGCCGGTaGTCCCTCAGGTCAAGCCGA +
Preference number: 3 (lower is better)
Translates to: RVKFKAILIKSVSLGLCRRSRSR*SLRSSR
Trigger: TCGGCTTGACCTGAGGGACAACCGGCTCCGAGACCT...TCTGCACAGGCCTAGGCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR GCA 72 bp ACGGTCTGCATCTACATCAATGCCCCGCTCAAAGGCTaGAAAGAACTTCTCACCCTCAAACATCTCCACAGT +
Preference number: 3 (lower is better)
Translates to: TVCIYINAPLKG*KELLTLKHLHS
Trigger: ACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCAGCCTTTGAGCGGGGCATTGATGTAGATGCAGACCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CAA 90 bp CCAGTACCAGGAGAAGTGCGTGACCTGGAAGCGTGCATACAGGTGGGTGAATTCATTTGTATGGATGTTTaGCCTGCATACTTGTCTGCA +
Preference number: 3 (lower is better)
Translates to: PVPGEVRDLEACIQVGEFICMDV*PAYLSA
Trigger: TGCAGACAAGTATGCAGGCAAAACATCCATACAAAT...GAATTCACCCACCTGTATGCACGCTTCCAGGTCACGCACTTCTCCTGGTACTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR CCA 72 bp ATAGAAGACAAAGCAGATTCTGCCATCCACACAGTCTaGACGGTCTGCATCTACATCAATGCCCCGCTCAAA +
Preference number: 3 (lower is better)
Translates to: IEDKADSAIHTV*TVCIYINAPLK
Trigger: TTTGAGCGGGGCATTGATGTAGATGCAGACCGTCCAGACTGTGTGGATGGCAGAATCTGCTTTGTCTTCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
3UTR-3UTR CAA 90 bp GTTGCTCTGAGTCAGGAATCCAGTTTCTGCATCACCCAGGTTCAGAGGCATCAAAAGGAGCAGCTAGTGTaGTTAACTACTGAGCCATCT +
Preference number: 3 (lower is better)
Translates to: VALSQESSFCITQVQRHQKEQLV*LTTEPS
Trigger: AGATGGCTCAGTAGTTAACAACACTAGCTGCTCCTT...TTGATGCCTCTGAACCTGGGTGATGCAGAAACTGGATTCCTGACTCAGAGCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CAA 90 bp AAAGGCAAGTGTTGGATACTGGGCGTAAAACGACCAGGAACCAGGAGAAGTGGGATTTGTATGGATGTTTaGCCTGCATACTTGTCTGCA +
Preference number: 3 (lower is better)
Translates to: KGKCWILGVKRPGTRRSGICMDV*PAYLSA
Trigger: TGCAGACAAGTATGCAGGCAAAACATCCATACAAAT...CCCACTTCTCCTGGTTCCTGGTCGTTTTACGCCCAGTATCCAACACTTGCCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
3UTR-3UTR CAA 90 bp AAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCCTAGGCCTGTGCAGACTCTGGGCTCTGCATGGAGACTaGCCGAGGCTCTTCTGTAAC +
Preference number: 3 (lower is better)
Translates to: KFKAILIKSVSLGLCRLWALHGD*PRLFCN
Trigger: GTTACAGAAGAGCCTCGGCAAGTCTCCATGCAGAGC...CCAGAGTCTGCACAGGCCTAGGCTTACAGACTTAATTAAGATAGCTTTAAACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR TCA 90 bp GGAACCTGGGATATGTCTGGGGGACTTGGGGGTGCTGGAGAGGCCTCGCCCAGAGGCTCTGGCCACCTTTaGGGACCAGGGAGCGAAGGC +
Preference number: 4 (lower is better)
Translates to: GTWDMSGGLGGAGEASPRGSGHL*GPGSEG
Trigger: GCCTTCGCTCCCTGGTCCTCAAAGGTGGCCAGAGCC...TCTGGGCGAGGCCTCTCCAGCACCCCCAAGTCCCCCAGACATATCCCAGGTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp AGGCTGTCCAGTCTGGCGCTCAGCCCAAGAGAAGAGCATGTGTCGGACCTGGCCGGCTCTGGCCACCTTTaGGGACCAGGGAGCGAAGGC +
Preference number: 4 (lower is better)
Translates to: RLSSLALSPREEHVSDLAGSGHL*GPGSEG
Trigger: GCCTTCGCTCCCTGGTCCTCAAAGGTGGCCAGAGCC...GGCCAGGTCCGACACATGCTCTTCTCTTGGGCTGAGCGCCAGACTGGACAGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp AGGTGGCCATCCACAGTGCATCTGTACCCTTCCTCTGCCGGGCAGCCTCTGCCTGGCTCTGGCCACCTTTaGGGACCAGGGAGCGAAGGC +
Preference number: 4 (lower is better)
Translates to: RWPSTVHLYPSSAGQPLPGSGHL*GPGSEG
Trigger: GCCTTCGCTCCCTGGTCCTCAAAGGTGGCCAGAGCC...AGGCAGAGGCTGCCCGGCAGAGGAAGGGTACAGATGCACTGTGGATGGCCACCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR GCA 90 bp CTCGGTAGCTTGATGGGCAAGGTGGCCATCCACAGTGCATCTGTACCCTTCCTCGGTAAGGGCGGGCAGTaGCCCCAGGGCCTCGGGCAG +
Preference number: 4 (lower is better)
Translates to: LGSLMGKVAIHSASVPFLGKGGQ*PQGLGQ
Trigger: CTGCCCGAGGCCCTGGGGGCACTGCCCGCCCTTACC...GAGGAAGGGTACAGATGCACTGTGGATGGCCACCTTGCCCATCAAGCTACCGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CCA 90 bp CCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACGGGACTTGGGGGTGCTaGAGAGGCCTCGCCCAGAGG +
Preference number: 4 (lower is better)
Translates to: PGVCGGQRKGLTLQNWSYGTWGC*RGLAQR
Trigger: CCTCTGGGCGAGGCCTCTCCAGCACCCCCAAGTCCC...GTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
3UTR CAA 72 bp GGGGCCAGCCCTGTGCGTCGAATGCTGTCCTGGTACTaGTGGCGGCCAAGCTCCAAGATGGCACGCACCTCT +
Preference number: 4 (lower is better)
Translates to: GASPVRRMLSWY*WRPSSKMARTS
Trigger: AGAGGTGCGTGCCATCTTGGAGCTTGGCCGCCACAAGTACCAGGACAGCATTCGACGCACAGGGCTGGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR GCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACCCAGAGGGTTCCCCTaGAGGCGCACAAAGGGAGCG +
Preference number: 4 (lower is better)
Translates to: AWCLWGPEEGADPSELELPRGFP*RRTKGA
Trigger: CGCTCCCTTTGTGCGCCTGCAGGGGAACCCTCTGGG...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
CDS-3UTR GCA 90 bp GGCAGAGTAGAATCCTCAGGGGCCAGCCCTGTGCGTCGAATGCTGTCCTGGTACCCCAGAGGGTTCCCCTaGAGGCGCACAAAGGGAGCG +
Preference number: 4 (lower is better)
Translates to: GRVESSGASPVRRMLSWYPRGFP*RRTKGA
Trigger: CGCTCCCTTTGTGCGCCTGCAGGGGAACCCTCTGGG...GTACCAGGACAGCATTCGACGCACAGGGCTGGCCCCTGAGGATTCTACTCTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTAGAGAAGTGGGGCACCTaGCAGCGAGCCCAGAGCCTC +
Preference number: 4 (lower is better)
Translates to: AWCLWGPEEGADPSELELEKWGT*QRAQSL
Trigger: GAGGCTCTGGGCTCGCTGCCAGGTGCCCCACTTCTC...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR TCA 90 bp GAGGCCTCGCCCAGAGGGTTCCCCTGCAGGCGCACAAAGGGAGCGTCTAGTAACGCGTCTCCAGCCTGTTaGAGCTCAGGTCTAGGTGAG +
Preference number: 4 (lower is better)
Translates to: EASPRGFPCRRTKGASSNASPAC*SSGLGE
Trigger: CTCACCTAGACCTGAGCTTCAACAGGCTGGAGACGC...GTTACTAGACGCTCCCTTTGTGCGCCTGCAGGGGAACCCTCTGGGCGAGGCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR GCA 90 bp CAGGGGCCAGCCCTGTGCGTCGAATGCTGTCCTGGTACTTGTGGCGGCCAAGCTCGCAAAAACTCCACTTaGAGCAGCTGTGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: QGPALCVECCPGTCGGQARKNST*SSCGGC
Trigger: GCAGCCCCCACAGCTGCTGCAAGTGGAGTTTTTGCG...AGCTTGGCCGCCACAAGTACCAGGACAGCATTCGACGCACAGGGCTGGCCCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR GCA 90 bp TTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAACGGTAAGGGCGGGCAGTaGCCCCAGGGCCTCGGGCAG +
Preference number: 4 (lower is better)
Translates to: FSAPILAEGPGMVASMGNGKGGQ*PQGLGQ
Trigger: CTGCCCGAGGCCCTGGGGGCACTGCCCGCCCTTACC...GTTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR CCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTAGTGGTCAGGGTTCCATaGAGGCAGGCACCCAGGGCA +
Preference number: 4 (lower is better)
Translates to: AWCLWGPEEGADPSELELVVRVP*RQAPRA
Trigger: TGCCCTGGGTGCCTGCCTCCATGGAACCCTGACCAC...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR CCA 90 bp CGCCGATCACTCTGTTCCAAGGCCTGTACCAGGTGTCCCACAGCTCCAGGCTGTGTGGTCAGGGTTCCATaGAGGCAGGCACCCAGGGCA +
Preference number: 4 (lower is better)
Translates to: RRSLCSKACTRCPTAPGCVVRVP*RQAPRA
Trigger: TGCCCTGGGTGCCTGCCTCCATGGAACCCTGACCAC...ACAGCCTGGAGCTGTGGGACACCTGGTACAGGCCTTGGAACAGAGTGATCGGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CCA 90 bp CACCTCTTCAGCCACATCCCGCCGATCACTCTGTTCCAAGGCCTGTACCAGGTGCCCCGCGAGGGAAGCTaGGAGACTCTGCAGCCGGTT +
Preference number: 4 (lower is better)
Translates to: HLFSHIPPITLFQGLYQVPREGS*ETLQPV
Trigger: AACCGGCTGCAGAGTCTCCCAGCTTCCCTCGCGGGG...CACCTGGTACAGGCCTTGGAACAGAGTGATCGGCGGGATGTGGCTGAAGAGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
3UTR CAA 72 bp TGCCCACTCCCCTGGGCACCCCGGAGTCTCGGTAGCTaGATGGGCAAGGTGGCCATCCACAGTGCATCTGTA +
Preference number: 4 (lower is better)
Translates to: CPLPWAPRSLGS*MGKVAIHSASV
Trigger: TACAGATGCACTGTGGATGGCCACCTTGCCCATCAAGCTACCGAGACTCCGGGGTGCCCAGGGGAGTGGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp GGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGGGCTCTGGCCACCTTTaGGGACCAGGGAGCGAAGGC +
Preference number: 4 (lower is better)
Translates to: GLLCSHLSRRAWHGSKYGGSGHL*GPGSEG
Trigger: GCCTTCGCTCCCTGGTCCTCAAAGGTGGCCAGAGCC...CCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR GCA 90 bp TGGGCAAGGTGGCCATCCACAGTGCATCTGTACCCTTCCTCTGCCGGGCAGCCTGTCAGGAGGTTGCTGTaGAGAACAAGGAGCCGCAGG +
Preference number: 4 (lower is better)
Translates to: WARWPSTVHLYPSSAGQPVRRLL*RTRSRR
Trigger: CCTGCGGCTCCTTGTTCTGCACAGCAACCTCCTGAC...AGGCTGCCCGGCAGAGGAAGGGTACAGATGCACTGTGGATGGCCACCTTGCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp CATCTCTCCCTCCAGGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTGGTCAGGGTTCCATaGAGGCAGGCACCCAGGGCA +
Preference number: 4 (lower is better)
Translates to: HLSLQAFSAPILAEGPGMVVRVP*RQAPRA
Trigger: TGCCCTGGGTGCCTGCCTCCATGGAACCCTGACCAC...CATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTGGAGGGAGAGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR CCA 90 bp AGATGGCACGCACCTCTTCAGCCACATCCCGCCGATCACTCTGTTCCAAGGCCTGTGGTCAGGGTTCCATaGAGGCAGGCACCCAGGGCA +
Preference number: 4 (lower is better)
Translates to: RWHAPLQPHPADHSVPRPVVRVP*RQAPRA
Trigger: TGCCCTGGGTGCCTGCCTCCATGGAACCCTGACCAC...AGGCCTTGGAACAGAGTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCATCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CCA 90 bp TGGGCAAGGTGGCCATCCACAGTGCATCTGTACCCTTCCTCTGCCGGGCAGCCTCGAGACGCTGAAGGGTaGACAGGGACCCGAGTGTTA +
Preference number: 4 (lower is better)
Translates to: WARWPSTVHLYPSSAGQPRDAEG*TGTRVL
Trigger: TAACACTCGGGTCCCTGTCCACCCTTCAGCGTCTCG...AGGCTGCCCGGCAGAGGAAGGGTACAGATGCACTGTGGATGGCCACCTTGCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CCA 90 bp TTCCAGTGCCACCTGAGTGGTGATATCATCCCAGGTGGTTGTCAGGGGTGTTCGGGGACTTGGGGGTGCTaGAGAGGCCTCGCCCAGAGG +
Preference number: 4 (lower is better)
Translates to: FQCHLSGDIIPGGCQGCSGTWGC*RGLAQR
Trigger: CCTCTGGGCGAGGCCTCTCCAGCACCCCCAAGTCCC...CGAACACCCCTGACAACCACCTGGGATGATATCACCACTCAGGTGGCACTGGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp GATACTGGGCGTAAAACGACCAGGAACCAGGAGAAGTGGGGCACCTGGCAGCGACAGAGAGACCAGGCCTaGCTCGGGCAACCAGAGTCG +
Preference number: 4 (lower is better)
Translates to: DTGRKTTRNQEKWGTWQRQRDQA*LGQPES
Trigger: CGACTCTGGTTGCCCGAGCCAGGCCTGGTCTCTCTG...TCGCTGCCAGGTGCCCCACTTCTCCTGGTTCCTGGTCGTTTTACGCCCAGTATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp GGCAGAGTAGAATCCTCAGGGGCCAGCCCTGTGCGTCGAATGCTGTCCTGGTACGGTTGCGAGGGAAGCTaGGAGACTCTGCAGCCGGTT +
Preference number: 4 (lower is better)
Translates to: GRVESSGASPVRRMLSWYGCEGS*ETLQPV
Trigger: AACCGGCTGCAGAGTCTCCCAGCTTCCCTCGCAACC...GTACCAGGACAGCATTCGACGCACAGGGCTGGCCCCTGAGGATTCTACTCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190068.7
CDS-3UTR TCA 90 bp CCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACGGCCTCGGGCAGCTCTaGGAGATGGTTGTGAGAAAG +
Preference number: 4 (lower is better)
Translates to: PGVCGGQRKGLTLQNWSYGLGQL*EMVVRK
Trigger: CTTTCTCACAACCATCTCTCAGAGCTGCCCGAGGCC...GTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR TCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTAGGCCTCGGGCAGCTCTaGGAGATGGTTGTGAGAAAG +
Preference number: 4 (lower is better)
Translates to: AWCLWGPEEGADPSELELGLGQL*EMVVRK
Trigger: CTTTCTCACAACCATCTCTCAGAGCTGCCCGAGGCC...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR TCA 90 bp CTCGGTAGCTTGATGGGCAAGGTGGCCATCCACAGTGCATCTGTACCCTTCCTCGAGAGATCGAGACGCTaGAGGGTGGACAGGGACCCG +
Preference number: 4 (lower is better)
Translates to: LGSLMGKVAIHSASVPFLERSRR*RVDRDP
Trigger: CGGGTCCCTGTCCACCCTTCAGCGTCTCGATCTCTC...GAGGAAGGGTACAGATGCACTGTGGATGGCCACCTTGCCCATCAAGCTACCGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp CTCGGTAGCTTGATGGGCAAGGTGGCCATCCACAGTGCATCTGTACCCTTCCTCCAGGCCAGTGGGCACTaGGGTCAGGAGGTTGCTGTG +
Preference number: 4 (lower is better)
Translates to: LGSLMGKVAIHSASVPFLQASGH*GQEVAV
Trigger: CACAGCAACCTCCTGACCTCAGTGCCCACTGGCCTG...GAGGAAGGGTACAGATGCACTGTGGATGGCCACCTTGCCCATCAAGCTACCGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR GCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACGCAAAAACTCCACTTaGAGCAGCTGTGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: AWCLWGPEEGADPSELELRKNST*SSCGGC
Trigger: GCAGCCCCCACAGCTGCTGCAAGTGGAGTTTTTGCG...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR GCA 90 bp CTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAATGGGGGACTTGGGGGTaGTGGAGAGGCCTCGCCCAG +
Preference number: 4 (lower is better)
Translates to: LLCSHLSRRAWHGSKYGQWGTWG*WRGLAQ
Trigger: CTGGGCGAGGCCTCTCCAGCACCCCCAAGTCCCCCA...TTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTAAAGCCGAGTGATCAGTaGCAGGTGGACCAGGCCAGT +
Preference number: 4 (lower is better)
Translates to: AWCLWGPEEGADPSELELKPSDQ*QVDQAS
Trigger: ACTGGCCTGGTCCACCTGCCACTGATCACTCGGCTT...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp GGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAGAGAGACCAGGCCTaGCTCGGGCAACCAGAGTCG +
Preference number: 4 (lower is better)
Translates to: GLLCSHLSRRAWHGSKYGQRDQA*LGQPES
Trigger: CGACTCTGGTTGCCCGAGCCAGGCCTGGTCTCTCTG...CCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
CDS-3UTR TCA 90 bp CGCCGATCACTCTGTTCCAAGGCCTGTACCAGGTGTCCCACAGCTCCAGGCTGTAAGCTCAGGTCTAGGTaGGCCAGGCAGGCCAAATCA +
Preference number: 4 (lower is better)
Translates to: RRSLCSKACTRCPTAPGCKLRSR*ARQAKS
Trigger: TGATTTGGCCTGCCTGGCTCACCTAGACCTGAGCTT...ACAGCCTGGAGCTGTGGGACACCTGGTACAGGCCTTGGAACAGAGTGATCGGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp CCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACGTGCATACAGGTGGGTaGATTCCAGTGCCACCTGAG +
Preference number: 4 (lower is better)
Translates to: PGVCGGQRKGLTLQNWSYVHTGG*IPVPPE
Trigger: CTCAGGTGGCACTGGAATTCACCCACCTGTATGCAC...GTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR GCA 90 bp TGGGCAAGGTGGCCATCCACAGTGCATCTGTACCCTTCCTCTGCCGGGCAGCCTTGTTGCAGCATCCTCTaGAGCAGCTGCAGTTTCCTC +
Preference number: 4 (lower is better)
Translates to: WARWPSTVHLYPSSAGQPCCSIL*SSCSFL
Trigger: GAGGAAACTGCAGCTGCTGCAGAGGATGCTGCAACA...AGGCTGCCCGGCAGAGGAAGGGTACAGATGCACTGTGGATGGCCACCTTGCCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR GCA 90 bp CATCTCTCCCTCCAGGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGAACGCATCCAGGCCGTaGAGTTCCGGGACACAGGTA +
Preference number: 4 (lower is better)
Translates to: HLSLQAFSAPILAEGPGMNASRP*SSGTQV
Trigger: TACCTGTGTCCCGGAACTGCACGGCCTGGATGCGTT...CATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTGGAGGGAGAGATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR GCA 90 bp GCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCTTCCGTGGCAGGCACTaGAGCAGAACCTGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: AFSAPILAEGPGMVASMGFRGRH*SRTCSG
Trigger: CCCTGAGCAGGTTCTGCTGCAGTGCCTGCCACGGAA...GCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR CCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACCACAGCCTCCAAGGTaGATGTTGCAGCATCCTCTG +
Preference number: 4 (lower is better)
Translates to: AWCLWGPEEGADPSELELPQPPR*MLQHPL
Trigger: CAGAGGATGCTGCAACATCCACCTTGGAGGCTGTGG...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR CCA 90 bp ACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGGTTCAGGGCCACGGTAGCGGTGGACCAGGCCAGTaGGCACTGAGGTCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: TSHPQTSPQSQRVQGHGSGGPGQ*ALRSGG
Trigger: ACCTCCTGACCTCAGTGCCCACTGGCCTGGTCCACC...GCTACCGTGGCCCTGAACCCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp CGGCCAAGCTCCAAGATGGCACGCACCTCTTCAGCCACATCCCGCCGATCACTCAGGTCAGCAATAGCCTaGGCATTTCTGGAACCTGGG +
Preference number: 4 (lower is better)
Translates to: RPSSKMARTSSATSRRSLRSAIA*AFLEPG
Trigger: CCCAGGTTCCAGAAATGCCCAGGCTATTGCTGACCT...GAGTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCATCTTGGAGCTTGGCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACTGTCCTGGTACTTGTaGCGGCCAAGCTCCAAGATG +
Preference number: 4 (lower is better)
Translates to: AWCLWGPEEGADPSELELLSWYL*RPSSKM
Trigger: CATCTTGGAGCTTGGCCGCCACAAGTACCAGGACAG...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR CCA 90 bp GTGGTATACCAGAGCCAGTACCAGGAGAAGTGCGTGACCTGGAAGCGTGCATACTGGCCCGAGGGAAGCTaGGAGACTCTGCAGCCGGTT +
Preference number: 4 (lower is better)
Translates to: VVYQSQYQEKCVTWKRAYWPEGS*ETLQPV
Trigger: AACCGGCTGCAGAGTCTCCCAGCTTCCCTCGGGCCA...GTATGCACGCTTCCAGGTCACGCACTTCTCCTGGTACTGGCTCTGGTATACCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp CGTGACCTGGAAGCGTGCATACAGGTGGGTGAATTCCAGTGCCACCTGAGTGGTGCGTCTCCAGCCTGTTaGAGCTCAGGTCTAGGTGAG +
Preference number: 4 (lower is better)
Translates to: RDLEACIQVGEFQCHLSGASPAC*SSGLGE
Trigger: CTCACCTAGACCTGAGCTTCAACAGGCTGGAGACGC...ACCACTCAGGTGGCACTGGAATTCACCCACCTGTATGCACGCTTCCAGGTCACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp TTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAACGAGAGATCGAGACGCTaGAGGGTGGACAGGGACCCG +
Preference number: 4 (lower is better)
Translates to: FSAPILAEGPGMVASMGNERSRR*RVDRDP
Trigger: CGGGTCCCTGTCCACCCTTCAGCGTCTCGATCTCTC...GTTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR TCA 90 bp ACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGGTTCAGGGCCACGGTAGCGTCGATAGTGGATGGTaGCAGGCGTGGTGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: TSHPQTSPQSQRVQGHGSVDSGW*QAWWWL
Trigger: GAGCCACCACCACGCCTGTCACCATCCACTATCGAC...GCTACCGTGGCCCTGAACCCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR GCA 90 bp GGCAGAGTAGAATCCTCAGGGGCCAGCCCTGTGCGTCGAATGCTGTCCTGGTACTGTTGCAGCATCCTCTaGAGCAGCTGCAGTTTCCTC +
Preference number: 4 (lower is better)
Translates to: GRVESSGASPVRRMLSWYCCSIL*SSCSFL
Trigger: GAGGAAACTGCAGCTGCTGCAGAGGATGCTGCAACA...GTACCAGGACAGCATTCGACGCACAGGGCTGGCCCCTGAGGATTCTACTCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR GCA 90 bp GCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCGTCAGGAGGTTGCTGTaGAGAACAAGGAGCCGCAGG +
Preference number: 4 (lower is better)
Translates to: AFSAPILAEGPGMVASMGVRRLL*RTRSRR
Trigger: CCTGCGGCTCCTTGTTCTGCACAGCAACCTCCTGAC...GCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
CDS-3UTR GCA 90 bp TTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAACCACTGCAGCAGAACCTaGTCAGGGTCTCGGCGCCTC +
Preference number: 4 (lower is better)
Translates to: FSAPILAEGPGMVASMGNHCSRT*SGSRRL
Trigger: GAGGCGCCGAGACCCTGAGCAGGTTCTGCTGCAGTG...GTTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR GCA 90 bp CCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACCCACACTCAGCAGGTTaGTCTGAGTCAGGAATCCAG +
Preference number: 4 (lower is better)
Translates to: PGVCGGQRKGLTLQNWSYPHSAG*SESGIQ
Trigger: CTGGATTCCTGACTCAGAGCAACCTGCTGAGTGTGG...GTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR CCA 90 bp GACCCTTCAGAACTGGAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGACCCTGCCCACTCCCCTaGGCACCCCGGAGTCTCGGT +
Preference number: 4 (lower is better)
Translates to: DPSELELQIVMSHQVGRGPCPLP*APRSLG
Trigger: ACCGAGACTCCGGGGTGCCCAGGGGAGTGGGCAGGG...TCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTCCAGTTCTGAAGGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR CCA 90 bp GGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCGTCGAATGCTGTCCTaGTACTTGTGGCGGCCAAGC +
Preference number: 4 (lower is better)
Translates to: GLLCSHLSRRAWHGSKYGRRMLS*YLWRPS
Trigger: GCTTGGCCGCCACAAGTACCAGGACAGCATTCGACG...CCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR TCA 90 bp TGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACAGATTGTCATGGCGTCTCCAGCCTGTTaGAGCTCAGGTCTAGGTGAG +
Preference number: 4 (lower is better)
Translates to: WGPEEGADPSELELQIVMASPAC*SSGLGE
Trigger: CTCACCTAGACCTGAGCTTCAACAGGCTGGAGACGC...CATGACAATCTGTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR TCA 90 bp CTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAAAGACTCTGGAGTCTGTaGAGCCGAGGTGCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: LLCSHLSRRAWHGSKYGQRLWSL*SRGARQ
Trigger: CTGCCTGGCACCTCGGCTTCACAGACTCCAGAGTCT...TTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR GCA 90 bp CATCTCTCCCTCCAGGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGTGTTGCAGCATCCTCTaGAGCAGCTGCAGTTTCCTC +
Preference number: 4 (lower is better)
Translates to: HLSLQAFSAPILAEGPGMCCSIL*SSCSFL
Trigger: GAGGAAACTGCAGCTGCTGCAGAGGATGCTGCAACA...CATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTGGAGGGAGAGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR GCA 90 bp TGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACAGATTGTCATGGGAGGCAGGGGCAACTaGACAGTGACAGGTTGTAGG +
Preference number: 4 (lower is better)
Translates to: WGPEEGADPSELELQIVMGGRGN*TVTGCR
Trigger: CCTACAACCTGTCACTGTGCAGTTGCCCCTGCCTCC...CATGACAATCTGTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR CCA 90 bp CTCGGTAGCTTGATGGGCAAGGTGGCCATCCACAGTGCATCTGTACCCTTCCTCCCACAGCCTCCAAGGTaGATGTTGCAGCATCCTCTG +
Preference number: 4 (lower is better)
Translates to: LGSLMGKVAIHSASVPFLPQPPR*MLQHPL
Trigger: CAGAGGATGCTGCAACATCCACCTTGGAGGCTGTGG...GAGGAAGGGTACAGATGCACTGTGGATGGCCACCTTGCCCATCAAGCTACCGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CCA 90 bp TGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACAGATTGTCATGCGAGACGCTGAAGGGTaGACAGGGACCCGAGTGTTA +
Preference number: 4 (lower is better)
Translates to: WGPEEGADPSELELQIVMRDAEG*TGTRVL
Trigger: TAACACTCGGGTCCCTGTCCACCCTTCAGCGTCTCG...CATGACAATCTGTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR CCA 90 bp GCCTGGTGTCTGTGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTAGGCATTTCTGGAACCTaGGATATGTCTGGGGGACTT +
Preference number: 4 (lower is better)
Translates to: AWCLWGPEEGADPSELELGISGT*DMSGGL
Trigger: AAGTCCCCCAGACATATCCCAGGTTCCAGAAATGCC...TAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCACAGACACCAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp TTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTAGGAACCAGGAGAAGTaGGGCACCTGGCAGCGAGCC +
Preference number: 4 (lower is better)
Translates to: LAEGPGMVASMGNLLSILRNQEK*GTWQRA
Trigger: GGCTCGCTGCCAGGTGCCCCACTTCTCCTGGTTCCT...AAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR TCA 90 bp TTCTGCCATCCACACAGTCTGGACGGTCTGCATCTACATCAATGCCCCGCTCAAGGCCTCGGGCAGCTCTaGGAGATGGTTGTGAGAAAG +
Preference number: 4 (lower is better)
Translates to: FCHPHSLDGLHLHQCPAQGLGQL*EMVVRK
Trigger: CTTTCTCACAACCATCTCTCAGAGCTGCCCGAGGCC...TTGAGCGGGGCATTGATGTAGATGCAGACCGTCCAGACTGTGTGGATGGCAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp AGAGGGCTTACTGATGCCTCTGATTCTTCCAGAAGGGTTCTCAGCTCTAGTCCAGAGAGATCGAGACGCTaGAGGGTGGACAGGGACCCG +
Preference number: 4 (lower is better)
Translates to: RGLTDASDSSRRVLSSSPERSRR*RVDRDP
Trigger: CGGGTCCCTGTCCACCCTTCAGCGTCTCGATCTCTC...TGGACTAGAGCTGAGAACCCTTCTGGAAGAATCAGAGGCATCAGTAAGCCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp TGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACAGATTGTCATGACCAGGAGAAGTGCGTaGCCTGGAAGCGTGCATACA +
Preference number: 4 (lower is better)
Translates to: WGPEEGADPSELELQIVMTRRSA*PGSVHT
Trigger: TGTATGCACGCTTCCAGGTCACGCACTTCTCCTGGT...CATGACAATCTGTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR TCA 90 bp CAGGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGCCTCTGCAGTGCAATaGGATTCACACGGTGCAGTC +
Preference number: 4 (lower is better)
Translates to: QAFSAPILAEGPGMVASMASAVQ*DSHGAV
Trigger: GACTGCACCGTGTGAATCTCATTGCACTGCAGAGGC...CATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR TCA 90 bp CTGAAGGAGCAGCTAGTGTTGTTAACTACTGAGCCATCTCTCCCTCCAGGCCTTGGAGTCTCGGTAGCTTaGTGGGCAAGGTGGCCATCC +
Preference number: 4 (lower is better)
Translates to: LKEQLVLLTTEPSLPPGLGVSVA*WARWPS
Trigger: GGATGGCCACCTTGCCCATCAAGCTACCGAGACTCC...AAGGCCTGGAGGGAGAGATGGCTCAGTAGTTAACAACACTAGCTGCTCCTTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR GCA 90 bp GGCACAGCAGAGGGCTTACTGATGCCTCTGATTCTTCCAGAAGGGTTCTCAGCTCGCAAAAACTCCACTTaGAGCAGCTGTGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GTAEGLLMPLILPEGFSARKNST*SSCGGC
Trigger: GCAGCCCCCACAGCTGCTGCAAGTGGAGTTTTTGCG...AGCTGAGAACCCTTCTGGAAGAATCAGAGGCATCAGTAAGCCCTCTGCTGTGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR GCA 90 bp TCAGCTCTAGTCCAGCCATATGCACTACCTGCATGGAGACTTGCCGAGGCTCTTAACGCATCCAGGCCGTaGAGTTCCGGGACACAGGTA +
Preference number: 4 (lower is better)
Translates to: SALVQPYALPAWRLAEALNASRP*SSGTQV
Trigger: TACCTGTGTCCCGGAACTGCACGGCCTGGATGCGTT...AAGAGCCTCGGCAAGTCTCCATGCAGGTAGTGCATATGGCTGGACTAGAGCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR GCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAGGTAAGGGCGGGCAGTaGCCCCAGGGCCTCGGGCAG +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVGKGGQ*PQGLGQ
Trigger: CTGCCCGAGGCCCTGGGGGCACTGCCCGCCCTTACC...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR GCA 90 bp AAAGAACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGGTTCAGGGCCACGGCCACCCCATGGGGCTaGAGCTCCAGGACACTACTA +
Preference number: 4 (lower is better)
Translates to: KELLTLKHLHSLRGFRATATPWG*SSRTLL
Trigger: TAGTAGTGTCCTGGAGCTGCAGCCCCATGGGGTGGC...CGTGGCCCTGAACCCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR GCA 90 bp CTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAACCAGAGCCTCTTGGGTaGCTCTTCCTCCAGTTGGGT +
Preference number: 4 (lower is better)
Translates to: LLCSHLSRRAWHGSKYGQPEPLG*LFLQLG
Trigger: ACCCAACTGGAGGAAGAGGCACCCAAGAGGCTCTGG...TTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR GCA 90 bp GACCCTTCAGAACTGGAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGACTGCCGGGCAGCCTCTaGCTCTGCAGGTACCTCCAC +
Preference number: 4 (lower is better)
Translates to: DPSELELQIVMSHQVGRGLPGSL*LCRYLH
Trigger: GTGGAGGTACCTGCAGAGGCAGAGGCTGCCCGGCAG...TCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTCCAGTTCTGAAGGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR GCA 90 bp GACCCTTCAGAACTGGAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGAGAGAAGTCAGTCCCCTaGCCACTCCCCTGGGCACCC +
Preference number: 4 (lower is better)
Translates to: DPSELELQIVMSHQVGRGEKSVP*PLPWAP
Trigger: GGGTGCCCAGGGGAGTGGGCAGGGGACTGACTTCTC...TCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTCCAGTTCTGAAGGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR CCA 90 bp GACCCTTCAGAACTGGAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGACCCCGCGAGGGAAGCTaGGAGACTCTGCAGCCGGTT +
Preference number: 4 (lower is better)
Translates to: DPSELELQIVMSHQVGRGPREGS*ETLQPV
Trigger: AACCGGCTGCAGAGTCTCCCAGCTTCCCTCGCGGGG...TCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTCCAGTTCTGAAGGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp CAGGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGAAGCTCACATCTTGCTaGAAAGCCACCCCATGGGGC +
Preference number: 4 (lower is better)
Translates to: QAFSAPILAEGPGMVASMKLTSC*KATPWG
Trigger: GCCCCATGGGGTGGCTTTCCAGCAAGATGTGAGCTT...CATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR TCA 90 bp CTGAAGGAGCAGCTAGTGTTGTTAACTACTGAGCCATCTCTCCCTCCAGGCCTTGGGGCAACTGCACAGTaGCAGGTTGTAGGAAGCTGG +
Preference number: 4 (lower is better)
Translates to: LKEQLVLLTTEPSLPPGLGATAQ*QVVGSW
Trigger: CCAGCTTCCTACAACCTGTCACTGTGCAGTTGCCCC...AAGGCCTGGAGGGAGAGATGGCTCAGTAGTTAACAACACTAGCTGCTCCTTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR GCA 90 bp CGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCCTAGGCCTGTGCAGAGGTAAGGGCGGGCAGTaGCCCCAGGGCCTCGGGCAG +
Preference number: 4 (lower is better)
Translates to: RVKFKAILIKSVSLGLCRGKGGQ*PQGLGQ
Trigger: CTGCCCGAGGCCCTGGGGGCACTGCCCGCCCTTACC...TCTGCACAGGCCTAGGCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CCA 90 bp TGCAAAGAACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGGTTCAGGGCCCGAGACGCTGAAGGGTaGACAGGGACCCGAGTGTTA +
Preference number: 4 (lower is better)
Translates to: CKELLTLKHLHSLRGFRARDAEG*TGTRVL
Trigger: TAACACTCGGGTCCCTGTCCACCCTTCAGCGTCTCG...GGCCCTGAACCCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CCA 90 bp GATGGCACGCACCTCTTCAGCCACATCCCGCCGATCACTCTGTTCCAAGGCCTGCAATCTCAGAGGGTATaGTGTCTAGAAGGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: DGTHLFSHIPPITLFQGLQSQRV*CLEGSQ
Trigger: CTGAGAACCTTCTAGACACCATACCCTCTGAGATTG...CAGGCCTTGGAACAGAGTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CCA 90 bp GACCCTTCAGAACTGGAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGAGGTGGACCAGGCCAGTaGGCACTGAGGTCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: DPSELELQIVMSHQVGRGGGPGQ*ALRSGG
Trigger: ACCTCCTGACCTCAGTGCCCACTGGCCTGGTCCACC...TCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTCCAGTTCTGAAGGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp TGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACAGATTGTCATGAAGCGTGCATACAGGTaGGTGAATTCCAGTGCCACC +
Preference number: 4 (lower is better)
Translates to: WGPEEGADPSELELQIVMKRAYR*VNSSAT
Trigger: GGTGGCACTGGAATTCACCCACCTGTATGCACGCTT...CATGACAATCTGTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR CCA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCCCCTGCCCACTCCCCTaGGCACCCCGGAGTCTCGGT +
Preference number: 4 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSPCPLP*APRSLG
Trigger: ACCGAGACTCCGGGGTGCCCAGGGGAGTGGGCAGGG...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR TCA 90 bp TTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTAAGCTCAGGTCTAGGTaGGCCAGGCAGGCCAAATCA +
Preference number: 4 (lower is better)
Translates to: LAEGPGMVASMGNLLSILKLRSR*ARQAKS
Trigger: TGATTTGGCCTGCCTGGCTCACCTAGACCTGAGCTT...AAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR TCA 90 bp CAATGCCCCGCTCAAAGGCTGCAAAGAACTTCTCACCCTCAAACATCTCCACAGAAGCTCAGGTCTAGGTaGGCCAGGCAGGCCAAATCA +
Preference number: 4 (lower is better)
Translates to: QCPAQRLQRTSHPQTSPQKLRSR*ARQAKS
Trigger: TGATTTGGCCTGCCTGGCTCACCTAGACCTGAGCTT...CTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCAGCCTTTGAGCGGGGCATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR GCA 90 bp AGAGGGCTTACTGATGCCTCTGATTCTTCCAGAAGGGTTCTCAGCTCTAGTCCAAACGCATCCAGGCCGTaGAGTTCCGGGACACAGGTA +
Preference number: 4 (lower is better)
Translates to: RGLTDASDSSRRVLSSSPNASRP*SSGTQV
Trigger: TACCTGTGTCCCGGAACTGCACGGCCTGGATGCGTT...TGGACTAGAGCTGAGAACCCTTCTGGAAGAATCAGAGGCATCAGTAAGCCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR GCA 90 bp TCAGAACTGGAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGAAACAAATGGGGGACTTGGGGGTaGTGGAGAGGCCTCGCCCAG +
Preference number: 4 (lower is better)
Translates to: SELELQIVMSHQVGRGNKWGTWG*WRGLAQ
Trigger: CTGGGCGAGGCCTCTCCAGCACCCCCAAGTCCCCCA...TTTGTTTCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTCCAGTTCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
CDS-3UTR GCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTTGGGGGACTTGGGGGTaGTGGAGAGGCCTCGCCCAG +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSWGTWG*WRGLAQ
Trigger: CTGGGCGAGGCCTCTCCAGCACCCCCAAGTCCCCCA...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR GCA 90 bp GGGCCTGGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTTATGTAAAAGCCACCCCATGGGGCTaGAGCTCCAGGACACTACTA +
Preference number: 4 (lower is better)
Translates to: GPGMVASMGNLLSILYVKATPWG*SSRTLL
Trigger: TAGTAGTGTCCTGGAGCTGCAGCCCCATGGGGTGGC...TTTTACATAAAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
CDS-3UTR GCA 90 bp GACCCTTCAGAACTGGAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGAGGCAGCCTCTGCCTCTaGAGGTACCTCCACAGGAAG +
Preference number: 4 (lower is better)
Translates to: DPSELELQIVMSHQVGRGGSLCL*RYLHRK
Trigger: CTTCCTGTGGAGGTACCTGCAGAGGCAGAGGCTGCC...TCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTCCAGTTCTGAAGGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR CCA 90 bp TCTTGGGTGCCTCTTCCTCCAGTTGGGTCTCTAGGTCATTCCAGGTGTTGTTACCCACAGCCTCCAAGGTaGATGTTGCAGCATCCTCTG +
Preference number: 4 (lower is better)
Translates to: SWVPLPPVGSLGHSRCCYPQPPR*MLQHPL
Trigger: CAGAGGATGCTGCAACATCCACCTTGGAGGCTGTGG...GTAACAACACCTGGAATGACCTAGAGACCCAACTGGAGGAAGAGGCACCCAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGGGACTTGGGGGTGCTaGAGAGGCCTCGCCCAGAGG +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSGTWGC*RGLAQR
Trigger: CCTCTGGGCGAGGCCTCTCCAGCACCCCCAAGTCCC...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp CTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAAGCCTCTTCCTCCAGTTaGGTCTCTAGGTCATTCCAG +
Preference number: 4 (lower is better)
Translates to: LLCSHLSRRAWHGSKYGQASSSS*VSRSFQ
Trigger: CTGGAATGACCTAGAGACCCAACTGGAGGAAGAGGC...TTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR CCA 90 bp CTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAAATCTACCTTGTTCCGTaGCAGGCACTGCAGCAGAAC +
Preference number: 4 (lower is better)
Translates to: LLCSHLSRRAWHGSKYGQIYLVP*QALQQN
Trigger: GTTCTGCTGCAGTGCCTGCCACGGAACAAGGTAGAT...TTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR CCA 90 bp GACCCTTCAGAACTGGAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGACCAGGCTGTCCAGTCTaGCGCTCAGCCCAAGAGAAG +
Preference number: 4 (lower is better)
Translates to: DPSELELQIVMSHQVGRGPGCPV*RSAQEK
Trigger: CTTCTCTTGGGCTGAGCGCCAGACTGGACAGCCTGG...TCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTCCAGTTCTGAAGGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR TCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGGCTCTGGCCACCTTTaGGGACCAGGGAGCGAAGGC +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSGSGHL*GPGSEG
Trigger: GCCTTCGCTCCCTGGTCCTCAAAGGTGGCCAGAGCC...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp CAGGTAGGTAGAGGAAACAAACTAGGTTCCCTGAAGGAGCAGCTAGTGTTGTTAGACCCCAGGATGACCTaGGGAGCAGAGAAGTGCTCC +
Preference number: 4 (lower is better)
Translates to: QVGRGNKLGSLKEQLVLLDPRMT*GAEKCS
Trigger: GGAGCACTTCTCTGCTCCTCAGGTCATCCTGGGGTC...TAACAACACTAGCTGCTCCTTCAGGGAACCTAGTTTGTTTCCTCTACCTACCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR TCA 90 bp CTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAACTCAGCAGGTTGCTCTaGGTCAGGAATCCAGTTTCT +
Preference number: 4 (lower is better)
Translates to: LLCSHLSRRAWHGSKYGQLSRLL*VRNPVS
Trigger: AGAAACTGGATTCCTGACTCAGAGCAACCTGCTGAG...TTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR GCA 90 bp GACCCTTCAGAACTGGAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGAAGCAGCTGTGGGGGCTaGTGGGAACACAGGTACTGT +
Preference number: 4 (lower is better)
Translates to: DPSELELQIVMSHQVGRGSSCGG*WEHRYC
Trigger: ACAGTACCTGTGTTCCCAGCAGCCCCCACAGCTGCT...TCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTCCAGTTCTGAAGGGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR GCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTCCCAGAGGGTTCCCCTaGAGGCGCACAAAGGGAGCG +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSPRGFP*RRTKGA
Trigger: CGCTCCCTTTGTGCGCCTGCAGGGGAACCCTCTGGG...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR GCA 90 bp CTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAAGTGGGTGAATTCCAGTaGCACCTGAGTGGTGATATC +
Preference number: 4 (lower is better)
Translates to: LLCSHLSRRAWHGSKYGQVGEFQ*HLSGDI
Trigger: GATATCACCACTCAGGTGGCACTGGAATTCACCCAC...TTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR GCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTCTGCCGGGCAGCCTCTaGCTCTGCAGGTACCTCCAC +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSLPGSL*LCRYLH
Trigger: GTGGAGGTACCTGCAGAGGCAGAGGCTGCCCGGCAG...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGAGAAGTCAGTCCCCTaGCCACTCCCCTGGGCACCC +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSEKSVP*PLPWAP
Trigger: GGGTGCCCAGGGGAGTGGGCAGGGGACTGACTTCTC...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp TGCAAAGAACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGGTTCAGGGCCCGTGGTGGTGGCTCCTaGTGGAAACTGTCCAAATCT +
Preference number: 4 (lower is better)
Translates to: CKELLTLKHLHSLRGFRARGGGS*WKLSKS
Trigger: AGATTTGGACAGTTTCCAGCAGGAGCCACCACCACG...GGCCCTGAACCCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTACCCCGCGAGGGAAGCTaGGAGACTCTGCAGCCGGTT +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVPREGS*ETLQPV
Trigger: AACCGGCTGCAGAGTCTCCCAGCTTCCCTCGCGGGG...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCGAGAAGTGGGGCACCTaGCAGCGAGCCCAGAGCCTC +
Preference number: 4 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSEKWGT*QRAQSL
Trigger: GAGGCTCTGGGCTCGCTGCCAGGTGCCCCACTTCTC...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CCA 90 bp CTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAAGAGAAGTGCTCCCTCTaGTGGCAAAAGGCAAGTGTT +
Preference number: 4 (lower is better)
Translates to: LLCSHLSRRAWHGSKYGQEKCSL*WQKASV
Trigger: AACACTTGCCTTTTGCCACCAGAGGGAGCACTTCTC...TTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR TCA 90 bp TCTTCAGGTGTGAATAGAAGACAAAGCAGATTCTGCCATCCACACAGTCTGGACGGCCTCGGGCAGCTCTaGGAGATGGTTGTGAGAAAG +
Preference number: 4 (lower is better)
Translates to: SSGVNRRQSRFCHPHSLDGLGQL*EMVVRK
Trigger: CTTTCTCACAACCATCTCTCAGAGCTGCCCGAGGCC...GTCCAGACTGTGTGGATGGCAGAATCTGCTTTGTCTTCTATTCACACCTGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCGAGAGATCGAGACGCTaGAGGGTGGACAGGGACCCG +
Preference number: 4 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSERSRR*RVDRDP
Trigger: CGGGTCCCTGTCCACCCTTCAGCGTCTCGATCTCTC...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp TCAGAACTGGAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGAAACAAAGAGAGATCGAGACGCTaGAGGGTGGACAGGGACCCG +
Preference number: 4 (lower is better)
Translates to: SELELQIVMSHQVGRGNKERSRR*RVDRDP
Trigger: CGGGTCCCTGTCCACCCTTCAGCGTCTCGATCTCTC...TTTGTTTCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTCCAGTTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR TCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTACAGGCCAGTGGGCACTaGGGTCAGGAGGTTGCTGTG +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVQASGH*GQEVAV
Trigger: CACAGCAACCTCCTGACCTCAGTGCCCACTGGCCTG...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR TCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTCAGGCCAGTGGGCACTaGGGTCAGGAGGTTGCTGTG +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSQASGH*GQEVAV
Trigger: CACAGCAACCTCCTGACCTCAGTGCCCACTGGCCTG...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR TCA 90 bp ACAAAGCAGATTCTGCCATCCACACAGTCTGGACGGTCTGCATCTACATCAATGCTAAGCAGGAAGTCATaGGGTCCCAGAGAGACCAGG +
Preference number: 4 (lower is better)
Translates to: TKQILPSTQSGRSASTSMLSRKS*GPRETR
Trigger: CCTGGTCTCTCTGGGACCTCATGACTTCCTGCTTAG...CATTGATGTAGATGCAGACCGTCCAGACTGTGTGGATGGCAGAATCTGCTTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR GCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTCACTGCAGCAGAACCTaGTCAGGGTCTCGGCGCCTC +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSHCSRT*SGSRRL
Trigger: GAGGCGCCGAGACCCTGAGCAGGTTCTGCTGCAGTG...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp GGGCCTGGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTTATGTAAAAGGTGGCCATCCACAGTaGATCTGTACCCTTCCTCTG +
Preference number: 4 (lower is better)
Translates to: GPGMVASMGNLLSILYVKGGHPQ*ICTLPL
Trigger: CAGAGGAAGGGTACAGATGCACTGTGGATGGCCACC...TTTTACATAAAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR CCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAGTGGTCAGGGTTCCATaGAGGCAGGCACCCAGGGCA +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVVVRVP*RQAPRA
Trigger: TGCCCTGGGTGCCTGCCTCCATGGAACCCTGACCAC...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CCA 90 bp CAGGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGCAATCTCAGAGGGTATaGTGTCTAGAAGGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: QAFSAPILAEGPGMVASMQSQRV*CLEGSQ
Trigger: CTGAGAACCTTCTAGACACCATACCCTCTGAGATTG...CATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR CCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAGGTGGACCAGGCCAGTaGGCACTGAGGTCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVGGPGQ*ALRSGG
Trigger: ACCTCCTGACCTCAGTGCCCACTGGCCTGGTCCACC...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp TGCAAAGAACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGGTTCAGGGCCGGCATTTCTGGAACCTaGGATATGTCTGGGGGACTT +
Preference number: 4 (lower is better)
Translates to: CKELLTLKHLHSLRGFRAGISGT*DMSGGL
Trigger: AAGTCCCCCAGACATATCCCAGGTTCCAGAAATGCC...GGCCCTGAACCCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGTTCTTTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTACAGAGAGACCAGGCCTaGCTCGGGCAACCAGAGTCG +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVQRDQA*LGQPES
Trigger: CGACTCTGGTTGCCCGAGCCAGGCCTGGTCTCTCTG...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGGAACCAGGAGAAGTaGGGCACCTGGCAGCGAGCC +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVRNQEK*GTWQRA
Trigger: GGCTCGCTGCCAGGTGCCCCACTTCTCCTGGTTCCT...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CCA 90 bp CTGAAGGAGCAGCTAGTGTTGTTAACTACTGAGCCATCTCTCCCTCCAGGCCTTCCACACAGGTTTTGGTaGTATACCAGAGCCAGTACC +
Preference number: 4 (lower is better)
Translates to: LKEQLVLLTTEPSLPPGLPHRFW*YTRAST
Trigger: GGTACTGGCTCTGGTATACCACCAAAACCTGTGTGG...AAGGCCTGGAGGGAGAGATGGCTCAGTAGTTAACAACACTAGCTGCTCCTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
3UTR CAA 72 bp TCTTCCTCCAGTTGGGTCTCTAGGTCATTCCAGGTGTaGTTACTCCGTGTCCTCACAACTACCTCACGACAG +
Preference number: 4 (lower is better)
Translates to: SSSSWVSRSFQV*LLRVLTTTSRQ
Trigger: CTGTCGTGAGGTAGTTGTGAGGACACGGAGTAACAACACCTGGAATGACCTAGAGACCCAACTGGAGGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAGTCGATAGTGGATGGTaGCAGGCGTGGTGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVVDSGW*QAWWWL
Trigger: GAGCCACCACCACGCCTGTCACCATCCACTATCGAC...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR TCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTCGATAGTGGATGGTaGCAGGCGTGGTGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSVDSGW*QAWWWL
Trigger: GAGCCACCACCACGCCTGTCACCATCCACTATCGAC...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR TCA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCGACCCCAGGATGACCTaGGGAGCAGAGAAGTGCTCC +
Preference number: 4 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSDPRMT*GAEKCS
Trigger: GGAGCACTTCTCTGCTCCTCAGGTCATCCTGGGGTC...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR TCA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCGGAGTCTCGGTAGCTTaGTGGGCAAGGTGGCCATCC +
Preference number: 4 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSGVSVA*WARWPS
Trigger: GGATGGCCACCTTGCCCATCAAGCTACCGAGACTCC...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR TCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGACTCTGGAGTCTGTaGAGCCGAGGTGCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVRLWSL*SRGARQ
Trigger: CTGCCTGGCACCTCGGCTTCACAGACTCCAGAGTCT...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCGCCACCCCATGGGGCTaGAGCTCCAGGACACTACTA +
Preference number: 4 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSATPWG*SSRTLL
Trigger: TAGTAGTGTCCTGGAGCTGCAGCCCCATGGGGTGGC...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR GCA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCTTCCGTGGCAGGCACTaGAGCAGAACCTGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSFRGRH*SRTCSG
Trigger: CCCTGAGCAGGTTCTGCTGCAGTGCCTGCCACGGAA...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCGGCAGCCTCTGCCTCTaGAGGTACCTCCACAGGAAG +
Preference number: 4 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSGSLCL*RYLHRK
Trigger: CTTCCTGTGGAGGTACCTGCAGAGGCAGAGGCTGCC...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp TCAGAACTGGAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGAAACAAATCTGTACCCTTCCTCTaGCGGGCAGCCTCTGCCTCT +
Preference number: 4 (lower is better)
Translates to: SELELQIVMSHQVGRGNKSVPFL*RAASAS
Trigger: AGAGGCAGAGGCTGCCCGGCAGAGGAAGGGTACAGA...TTTGTTTCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTCCAGTTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR GCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTTCTGTACCCTTCCTCTaGCGGGCAGCCTCTGCCTCT +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSSVPFL*RAASAS
Trigger: AGAGGCAGAGGCTGCCCGGCAGAGGAAGGGTACAGA...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp CCTGGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTTATGTAAAACAAGCCCTGTGCGTCGAATaGTGTCCTGGTACTTGTGGC +
Preference number: 4 (lower is better)
Translates to: PGMVASMGNLLSILYVKQALCVE*CPGTCG
Trigger: GCCACAAGTACCAGGACAGCATTCGACGCACAGGGC...TTGTTTTACATAAAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR CCA 90 bp GGGCCTGGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTTATGTAAAAGTCACAGAACAGCCATaGGGAGTCACAAGGAAGCTG +
Preference number: 4 (lower is better)
Translates to: GPGMVASMGNLLSILYVKVTEQP*GVTRKL
Trigger: CAGCTTCCTTGTGACTCCCCATGGCTGTTCTGTGAC...TTTTACATAAAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR CCA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCCCAGGCTGTCCAGTCTaGCGCTCAGCCCAAGAGAAG +
Preference number: 4 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSPGCPV*RSAQEK
Trigger: CTTCTCTTGGGCTGAGCGCCAGACTGGACAGCCTGG...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR TCA 90 bp CCTGGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTTATGTAAAACAAAAGCTCAGGTCTAGGTaGGCCAGGCAGGCCAAATCA +
Preference number: 4 (lower is better)
Translates to: PGMVASMGNLLSILYVKQKLRSR*ARQAKS
Trigger: TGATTTGGCCTGCCTGGCTCACCTAGACCTGAGCTT...TTGTTTTACATAAAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR TCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGCGTCTCCAGCCTGTTaGAGCTCAGGTCTAGGTGAG +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSASPAC*SSGLGE
Trigger: CTCACCTAGACCTGAGCTTCAACAGGCTGGAGACGC...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAGGCCTCGGGCAGCTCTaGGAGATGGTTGTGAGAAAG +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVGLGQL*EMVVRK
Trigger: CTTTCTCACAACCATCTCTCAGAGCTGCCCGAGGCC...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCGGGGCAACTGCACAGTaGCAGGTTGTAGGAAGCTGG +
Preference number: 4 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSGATAQ*QVVGSW
Trigger: CCAGCTTCCTACAACCTGTCACTGTGCAGTTGCCCC...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTCGCAAAAACTCCACTTaGAGCAGCTGTGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSRKNST*SSCGGC
Trigger: GCAGCCCCCACAGCTGCTGCAAGTGGAGTTTTTGCG...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR GCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAACGCATCCAGGCCGTaGAGTTCCGGGACACAGGTA +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVNASRP*SSGTQV
Trigger: TACCTGTGTCCCGGAACTGCACGGCCTGGATGCGTT...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR GCA 90 bp TCAGAACTGGAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGAAACAAAAACGCATCCAGGCCGTaGAGTTCCGGGACACAGGTA +
Preference number: 4 (lower is better)
Translates to: SELELQIVMSHQVGRGNKNASRP*SSGTQV
Trigger: TACCTGTGTCCCGGAACTGCACGGCCTGGATGCGTT...TTTGTTTCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTCCAGTTCTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR GCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAGTCAGGAGGTTGCTGTaGAGAACAAGGAGCCGCAGG +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVVRRLL*RTRSRR
Trigger: CCTGCGGCTCCTTGTTCTGCACAGCAACCTCCTGAC...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR GCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTCCAGAGCCTCTTGGGTaGCTCTTCCTCCAGTTGGGT +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSPEPLG*LFLQLG
Trigger: ACCCAACTGGAGGAAGAGGCACCCAAGAGGCTCTGG...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGGAGGCAGGGGCAACTaGACAGTGACAGGTTGTAGG +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSGGRGN*TVTGCR
Trigger: CCTACAACCTGTCACTGTGCAGTTGCCCCTGCCTCC...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp CAGGTAGGTAGAGGAAACAAACTAGGTTCCCTGAAGGAGCAGCTAGTGTTGTTACGTGACCTGGAAGCGTaGATACAGGTGGGTGAATTC +
Preference number: 4 (lower is better)
Translates to: QVGRGNKLGSLKEQLVLLRDLEA*IQVGEF
Trigger: GAATTCACCCACCTGTATGCACGCTTCCAGGTCACG...TAACAACACTAGCTGCTCCTTCAGGGAACCTAGTTTGTTTCCTCTACCTACCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR GCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAGCCCTGTGCGTCGAATaGTGTCCTGGTACTTGTGGC +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVALCVE*CPGTCG
Trigger: GCCACAAGTACCAGGACAGCATTCGACGCACAGGGC...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CCA 90 bp GAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGAAACAAACTAGGTTCCCCACAGCCTCCAAGGTaGATGTTGCAGCATCCTCTG +
Preference number: 4 (lower is better)
Translates to: ELQIVMSHQVGRGNKLGSPQPPR*MLQHPL
Trigger: CAGAGGATGCTGCAACATCCACCTTGGAGGCTGTGG...GGAACCTAGTTTGTTTCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR CCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTACGAGACGCTGAAGGGTaGACAGGGACCCGAGTGTTA +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVRDAEG*TGTRVL
Trigger: TAACACTCGGGTCCCTGTCCACCCTTCAGCGTCTCG...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CCA 90 bp CTGAAGGAGCAGCTAGTGTTGTTAACTACTGAGCCATCTCTCCCTCCAGGCCTTCAATCTCAGAGGGTATaGTGTCTAGAAGGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: LKEQLVLLTTEPSLPPGLQSQRV*CLEGSQ
Trigger: CTGAGAACCTTCTAGACACCATACCCTCTGAGATTG...AAGGCCTGGAGGGAGAGATGGCTCAGTAGTTAACAACACTAGCTGCTCCTTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR CCA 90 bp TCTTGGGTGCCTCTTCCTCCAGTTGGGTCTCTAGGTCATTCCAGGTGTTGTTACCAATCTCAGAGGGTATaGTGTCTAGAAGGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: SWVPLPPVGSLGHSRCCYQSQRV*CLEGSQ
Trigger: CTGAGAACCTTCTAGACACCATACCCTCTGAGATTG...GTAACAACACCTGGAATGACCTAGAGACCCAACTGGAGGAAGAGGCACCCAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTAAGCCGAGTGATCAGTaGCAGGTGGACCAGGCCAGT +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSKPSDQ*QVDQAS
Trigger: ACTGGCCTGGTCCACCTGCCACTGATCACTCGGCTT...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCGGCCAAGCTCCAAGATaGCACGCACCTCTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSGQAPR*HAPLQP
Trigger: TGGCTGAAGAGGTGCGTGCCATCTTGGAGCTTGGCC...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAGGCCAAGCTCCAAGATaGCACGCACCTCTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVGQAPR*HAPLQP
Trigger: TGGCTGAAGAGGTGCGTGCCATCTTGGAGCTTGGCC...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTCGTCGAATGCTGTCCTaGTACTTGTGGCGGCCAAGC +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSRRMLS*YLWRPS
Trigger: GCTTGGCCGCCACAAGTACCAGGACAGCATTCGACG...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR TCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAAGCTCAGGTCTAGGTaGGCCAGGCAGGCCAAATCA +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVKLRSR*ARQAKS
Trigger: TGATTTGGCCTGCCTGGCTCACCTAGACCTGAGCTT...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp CGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCCTAGGCCTGTGCAGAGCGTCTCCAGCCTGTTaGAGCTCAGGTCTAGGTGAG +
Preference number: 4 (lower is better)
Translates to: RVKFKAILIKSVSLGLCRASPAC*SSGLGE
Trigger: CTCACCTAGACCTGAGCTTCAACAGGCTGGAGACGC...TCTGCACAGGCCTAGGCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR TCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTACTAAGCAGGAAGTCATaGGGTCCCAGAGAGACCAGG +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVLSRKS*GPRETR
Trigger: CCTGGTCTCTCTGGGACCTCATGACTTCCTGCTTAG...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR TCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTCTAAGCAGGAAGTCATaGGGTCCCAGAGAGACCAGG +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSLSRKS*GPRETR
Trigger: CCTGGTCTCTCTGGGACCTCATGACTTCCTGCTTAG...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR TCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTGCATACAGGTGGGTaGATTCCAGTGCCACCTGAG +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSVHTGG*IPVPPE
Trigger: CTCAGGTGGCACTGGAATTCACCCACCTGTATGCAC...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR TCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAACCAGGAGAAGTGCGTaGCCTGGAAGCGTGCATACA +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVTRRSA*PGSVHT
Trigger: TGTATGCACGCTTCCAGGTCACGCACTTCTCCTGGT...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR TCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGCCTCTGCAGTGCAATaGGATTCACACGGTGCAGTC +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSASAVQ*DSHGAV
Trigger: GACTGCACCGTGTGAATCTCATTGCACTGCAGAGGC...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCTCGGCGCCTCTGCAGTaGAATGAGATTCACACGGTG +
Preference number: 4 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSSAPLQ*NEIHTV
Trigger: CACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGA...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAGGTGGCCATCCACAGTaGATCTGTACCCTTCCTCTG +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVGGHPQ*ICTLPL
Trigger: CAGAGGAAGGGTACAGATGCACTGTGGATGGCCACC...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTACCACAGCCTCCAAGGTaGATGTTGCAGCATCCTCTG +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVPQPPR*MLQHPL
Trigger: CAGAGGATGCTGCAACATCCACCTTGGAGGCTGTGG...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CCA 90 bp AAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCCTAGGCCTGTGCAGACTCTGGCGAGACGCTGAAGGGTaGACAGGGACCCGAGTGTTA +
Preference number: 4 (lower is better)
Translates to: KFKAILIKSVSLGLCRLWRDAEG*TGTRVL
Trigger: TAACACTCGGGTCCCTGTCCACCCTTCAGCGTCTCG...CCAGAGTCTGCACAGGCCTAGGCTTACAGACTTAATTAAGATAGCTTTAAACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CCA 90 bp GAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGAAACAAACTAGGTTCCAGGTCAGCAATAGCCTaGGCATTTCTGGAACCTGGG +
Preference number: 4 (lower is better)
Translates to: ELQIVMSHQVGRGNKLGSRSAIA*AFLEPG
Trigger: CCCAGGTTCCAGAAATGCCCAGGCTATTGCTGACCT...GGAACCTAGTTTGTTTCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAAGCTCACATCTTGCTaGAAAGCCACCCCATGGGGC +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVKLTSC*KATPWG
Trigger: GCCCCATGGGGTGGCTTTCCAGCAAGATGTGAGCTT...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTACTGTCCTGGTACTTGTaGCGGCCAAGCTCCAAGATG +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVLSWYL*RPSSKM
Trigger: CATCTTGGAGCTTGGCCGCCACAAGTACCAGGACAG...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTATGTTGCAGCATCCTCTaGAGCAGCTGCAGTTTCCTC +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVCCSIL*SSCSFL
Trigger: GAGGAAACTGCAGCTGCTGCAGAGGATGCTGCAACA...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR GCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTCGTGACCTGGAAGCGTaGATACAGGTGGGTGAATTC +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSRDLEA*IQVGEF
Trigger: GAATTCACCCACCTGTATGCACGCTTCCAGGTCACG...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTACCACACTCAGCAGGTTaGTCTGAGTCAGGAATCCAG +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVPHSAG*SESGIQ
Trigger: CTGGATTCCTGACTCAGAGCAACCTGCTGAGTGTGG...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGGTCAGCAATAGCCTaGGCATTTCTGGAACCTGGG +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVRSAIA*AFLEPG
Trigger: CCCAGGTTCCAGAAATGCCCAGGCTATTGCTGACCT...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAGTCACAGAACAGCCATaGGGAGTCACAAGGAAGCTG +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVVTEQP*GVTRKL
Trigger: CAGCTTCCTTGTGACTCCCCATGGCTGTTCTGTGAC...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGCCTCTTCCTCCAGTTaGGTCTCTAGGTCATTCCAG +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSASSSS*VSRSFQ
Trigger: CTGGAATGACCTAGAGACCCAACTGGAGGAAGAGGC...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAAGCGTGCATACAGGTaGGTGAATTCCAGTGCCACC +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVKRAYR*VNSSAT
Trigger: GGTGGCACTGGAATTCACCCACCTGTATGCACGCTT...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CCA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCCCCCCACACAGGTTTTaGTGGTATACCAGAGCCAGT +
Preference number: 4 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSPPHRF*WYTRAS
Trigger: ACTGGCTCTGGTATACCACCAAAACCTGTGTGGGGG...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTCCCCCACACAGGTTTTaGTGGTATACCAGAGCCAGT +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSPPHRF*WYTRAS
Trigger: ACTGGCTCTGGTATACCACCAAAACCTGTGTGGGGG...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTATCTACCTTGTTCCGTaGCAGGCACTGCAGCAGAAC +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSIYLVP*QALQQN
Trigger: GTTCTGCTGCAGTGCCTGCCACGGAACAAGGTAGAT...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR TCA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCAATTCCAGTGCCACCTaGGTGGTGATATCATCCCAG +
Preference number: 4 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSNSSAT*VVISSQ
Trigger: CTGGGATGATATCACCACTCAGGTGGCACTGGAATT...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR TCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTAATTCCAGTGCCACCTaGGTGGTGATATCATCCCAG +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSNSSAT*VVISSQ
Trigger: CTGGGATGATATCACCACTCAGGTGGCACTGGAATT...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR TCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTCTCAGCAGGTTGCTCTaGGTCAGGAATCCAGTTTCT +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSLSRLL*VRNPVS
Trigger: AGAAACTGGATTCCTGACTCAGAGCAACCTGCTGAG...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAGTGGGTGAATTCCAGTaGCACCTGAGTGGTGATATC +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVVGEFQ*HLSGDI
Trigger: GATATCACCACTCAGGTGGCACTGGAATTCACCCAC...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp GAGTTACAGATTGTCATGAGCCATCAGGTAGGTAGAGGAAACAAACTAGGTTCCAGACAAAGCAGATTCTaGCATCCACACAGTCTGGAC +
Preference number: 4 (lower is better)
Translates to: ELQIVMSHQVGRGNKLGSRQSRF*HPHSLD
Trigger: GTCCAGACTGTGTGGATGGCAGAATCTGCTTTGTCT...GGAACCTAGTTTGTTTCCTCTACCTACCTGATGGCTCATGACAATCTGTAACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR CCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAGGCATTTCTGGAACCTaGGATATGTCTGGGGGACTT +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVGISGT*DMSGGL
Trigger: AAGTCCCCCAGACATATCCCAGGTTCCAGAAATGCC...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR CCA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCGAGAAGTGCTCCCTCTaGTGGCAAAAGGCAAGTGTT +
Preference number: 4 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSEKCSL*WQKASV
Trigger: AACACTTGCCTTTTGCCACCAGAGGGAGCACTTCTC...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTCCACACAGGTTTTGGTaGTATACCAGAGCCAGTACC +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSPHRFW*YTRAST
Trigger: GGTACTGGCTCTGGTATACCACCAAAACCTGTGTGG...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR GCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGACAAAGCAGATTCTaGCATCCACACAGTCTGGAC +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVRQSRF*HPHSLD
Trigger: GTCCAGACTGTGTGGATGGCAGAATCTGCTTTGTCT...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR TCA 90 bp GCCTGGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTTATGTAAAACATACGTTCTTCAGGTGTaGATAGAAGACAAAGCAGAT +
Preference number: 4 (lower is better)
Translates to: AWHGSKYGQPALYPLCKTYVLQV*IEDKAD
Trigger: ATCTGCTTTGTCTTCTATTCACACCTGAAGAACGTA...TGTTTTACATAAAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS-3UTR CCA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTACAATCTCAGAGGGTATaGTGTCTAGAAGGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: RALPTGRVKFKAILIKSVQSQRV*CLEGSQ
Trigger: CTGAGAACCTTCTAGACACCATACCCTCTGAGATTG...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGCAAAAGGCAAGTGTTaGATACTGGGCGTAAAACGA +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSAKGKC*ILGVKR
Trigger: TCGTTTTACGCCCAGTATCCAACACTTGCCTTTTGC...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR TCA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTTACGTTCTTCAGGTGTaGATAGAAGACAAAGCAGAT +
Preference number: 4 (lower is better)
Translates to: DRALPTGRVKFKAILIKSYVLQV*IEDKAD
Trigger: ATCTGCTTTGTCTTCTATTCACACCTGAAGAACGTA...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS TCA 90 bp TTCCATGGAGGCAGGCACCCAGGGCACCCCGGCTCTGGCCACCTTTaGGGACCAGGGAGCGAAGGCGCAGCAGACTCCACGGAACCTTGG +
Preference number: 5 (lower is better)
Translates to: FHGGRHPGHPGSGHL*GPGSEGAADSTEPW
Trigger: CCAAGGTTCCGTGGAGTCTGCTGCGCCTTCGCTCCCTGGTCCTCAAAGGTGGCCAGAGCCGGGGTGCCCTGGGTGCCTGCCTCCATGGAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS TCA 90 bp GAGGAAGGTAAGGGCGGGCAGTGCCCCCAGGGCCTCGGGCAGCTCTaGGAGATGGTTGTGAGAAAGCAGCAACGCATCCAGGCCGTGCAG +
Preference number: 5 (lower is better)
Translates to: EEGKGGQCPQGLGQL*EMVVRKQQRIQAVQ
Trigger: CTGCACGGCCTGGATGCGTTGCTGCTTTCTCACAACCATCTCTCAGAGCTGCCCGAGGCCCTGGGGGCACTGCCCGCCCTTACCTTCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS CCA 90 bp TGCAGCAGCTGTGGGGGCTGCTGGGAACACAGGTACTGTAGCCGATaGCAGCCCCCTGGGCGTAGGTCCAAGTTCAACTGGTTCCCAGCC +
Preference number: 5 (lower is better)
Translates to: CSSCGGCWEHRYCSR*QPPGRRSKFNWFPA
Trigger: GGCTGGGAACCAGTTGAACTTGGACCTACGCCCAGGGGGCTGCCATCGGCTACAGTACCTGTGTTCCCAGCAGCCCCCACAGCTGCTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp CGCCGATCACTCTGTTCCAAGGCCTGTACCAGGTGTCCCACAGCTCCAGGCTGTCGGCTCTGGCCACCTTaGAGGACCAGGGAGCGAAGG +
Preference number: 5 (lower is better)
Translates to: RRSLCSKACTRCPTAPGCRLWPP*RTRERR
Trigger: CCTTCGCTCCCTGGTCCTCAAAGGTGGCCAGAGCCG...ACAGCCTGGAGCTGTGGGACACCTGGTACAGGCCTTGGAACAGAGTGATCGGCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS TCA 90 bp CCTTGGCTAGGGTGTCATCCAGCAGCTGAGGGTCCTCATGGGTGCTaGGCCGCAAAAACTCCACTTGCAGCAGCTGTGGGGGCTGCTGGG +
Preference number: 5 (lower is better)
Translates to: PWLGCHPAAEGPHGC*AAKTPLAAAVGAAG
Trigger: CCCAGCAGCCCCCACAGCTGCTGCAAGTGGAGTTTTTGCGGCTCAGCACCCATGAGGACCCTCAGCTGCTGGATGACACCCTAGCCAAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp GTCCAGTCTGGCGCTCAGCCCAAGAGAAGAGCATGTGTCGGACCTGGCCATCCACGGTTGGAGGCCAGATaGAGCTCACTGAGGCTGCGC +
Preference number: 5 (lower is better)
Translates to: VQSGAQPKRRACVGPGHPRLEAR*SSLRLR
Trigger: GCGCAGCCTCAGTGAGCTCAATCTGGCCTCCAACCG...TGGATGGCCAGGTCCGACACATGCTCTTCTCTTGGGCTGAGCGCCAGACTGGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp CGTGACCTGGAAGCGTGCATACAGGTGGGTGAATTCCAGTGCCACCTGAGTGGTCGGCTCTGGCCACCTTaGAGGACCAGGGAGCGAAGG +
Preference number: 5 (lower is better)
Translates to: RDLEACIQVGEFQCHLSGRLWPP*RTRERR
Trigger: CCTTCGCTCCCTGGTCCTCAAAGGTGGCCAGAGCCG...ACCACTCAGGTGGCACTGGAATTCACCCACCTGTATGCACGCTTCCAGGTCACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp CATCTCTCCCTCCAGGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGAGGTCTCGGAGCCGGTaGTCCCTCAGGTCAAGCCGA +
Preference number: 5 (lower is better)
Translates to: HLSLQAFSAPILAEGPGMRSRSR*SLRSSR
Trigger: TCGGCTTGACCTGAGGGACAACCGGCTCCGAGACCT...CATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTGGAGGGAGAGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
CDS TCA 90 bp CGCAGCAGACTCCACGGAACCTTGGCTAGGGTGTCATCCAGCAGCTaGGGGTCCTCATGGGTGCTGAGCCGCAAAAACTCCACTTGCAGC +
Preference number: 5 (lower is better)
Translates to: RSRLHGTLARVSSSS*GSSWVLSRKNSTCS
Trigger: GCTGCAAGTGGAGTTTTTGCGGCTCAGCACCCATGAGGACCCTCAGCTGCTGGATGACACCCTAGCCAAGGTTCCGTGGAGTCTGCTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS TCA 90 bp ACACAGGTAGGCAGCGTCTCCAGCCTGTTGAAGCTCAGGTCTAGGTaGGCCAGGCAGGCCAAATCACTCAGGCCAGCAGGCAGAGTGGTC +
Preference number: 5 (lower is better)
Translates to: TQVGSVSSLLKLRSR*ARQAKSLRPAGRVV
Trigger: GACCACTCTGCCTGCTGGCCTGAGTGATTTGGCCTGCCTGGCTCACCTAGACCTGAGCTTCAACAGGCTGGAGACGCTGCCTACCTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp AGCCGACTCAGGGTGGCATCTACCTTGTTCCGTGGCAGGCACTGCAGCAGAACCCCTCCAAGGTGGATGTaGCAGCATCCTCTGCAGCAG +
Preference number: 5 (lower is better)
Translates to: SRLRVASTLFRGRHCSRTPPRWM*QHPLQQ
Trigger: CTGCTGCAGAGGATGCTGCAACATCCACCTTGGAGG...GGTTCTGCTGCAGTGCCTGCCACGGAACAAGGTAGATGCCACCCTGAGTCGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp TGCTCAGGGTCTCGGCGCCTCTGCAGTGCAATGAGATTCACACGGTGCAGTCGCAGACTCTGCAGCCGGTaGGAGGCCAGATTGAGCTCA +
Preference number: 5 (lower is better)
Translates to: CSGSRRLCSAMRFTRCSRRLCSR*EARLSS
Trigger: TGAGCTCAATCTGGCCTCCAACCGGCTGCAGAGTCT...GCGACTGCACCGTGTGAATCTCATTGCACTGCAGAGGCGCCGAGACCCTGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp TTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAACCGGCTCTGGCCACCTTaGAGGACCAGGGAGCGAAGG +
Preference number: 5 (lower is better)
Translates to: FSAPILAEGPGMVASMGNRLWPP*RTRERR
Trigger: CCTTCGCTCCCTGGTCCTCAAAGGTGGCCAGAGCCG...GTTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR CAA 90 bp TGGGGGCCAGAGGAAGGGGCTGACCCTTCAGAACTGGAGTTACAGATTGTCATGCGGTTGGAGGCCAGATaGAGCTCACTGAGGCTGCGC +
Preference number: 5 (lower is better)
Translates to: WGPEEGADPSELELQIVMRLEAR*SSLRLR
Trigger: GCGCAGCCTCAGTGAGCTCAATCTGGCCTCCAACCG...CATGACAATCTGTAACTCCAGTTCTGAAGGGTCAGCCCCTTCCTCTGGCCCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR CAA 90 bp AGATGGCACGCACCTCTTCAGCCACATCCCGCCGATCACTCTGTTCCAAGGCCTAGACTCTGCAGCCGGTaGGAGGCCAGATTGAGCTCA +
Preference number: 5 (lower is better)
Translates to: RWHAPLQPHPADHSVPRPRLCSR*EARLSS
Trigger: TGAGCTCAATCTGGCCTCCAACCGGCTGCAGAGTCT...AGGCCTTGGAACAGAGTGATCGGCGGGATGTGGCTGAAGAGGTGCGTGCCATCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp CTGAAGGAGCAGCTAGTGTTGTTAACTACTGAGCCATCTCTCCCTCCAGGCCTTCGGCTCTGGCCACCTTaGAGGACCAGGGAGCGAAGG +
Preference number: 5 (lower is better)
Translates to: LKEQLVLLTTEPSLPPGLRLWPP*RTRERR
Trigger: CCTTCGCTCCCTGGTCCTCAAAGGTGGCCAGAGCCG...AAGGCCTGGAGGGAGAGATGGCTCAGTAGTTAACAACACTAGCTGCTCCTTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR CAA 90 bp GGCACAGCAGAGGGCTTACTGATGCCTCTGATTCTTCCAGAAGGGTTCTCAGCTCGGTTGGAGGCCAGATaGAGCTCACTGAGGCTGCGC +
Preference number: 5 (lower is better)
Translates to: GTAEGLLMPLILPEGFSARLEAR*SSLRLR
Trigger: GCGCAGCCTCAGTGAGCTCAATCTGGCCTCCAACCG...AGCTGAGAACCCTTCTGGAAGAATCAGAGGCATCAGTAAGCCCTCTGCTGTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp TTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTCGGTTGGAGGCCAGATaGAGCTCACTGAGGCTGCGC +
Preference number: 5 (lower is better)
Translates to: LAEGPGMVASMGNLLSILRLEAR*SSLRLR
Trigger: GCGCAGCCTCAGTGAGCTCAATCTGGCCTCCAACCG...AAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR CAA 90 bp ACTTCTCACCCTCAAACATCTCCACAGTCTCAGAGGGTTCAGGGCCACGGTAGCAGACTCTGCAGCCGGTaGGAGGCCAGATTGAGCTCA +
Preference number: 5 (lower is better)
Translates to: TSHPQTSPQSQRVQGHGSRLCSR*EARLSS
Trigger: TGAGCTCAATCTGGCCTCCAACCGGCTGCAGAGTCT...GCTACCGTGGCCCTGAACCCTCTGAGACTGTGGAGATGTTTGAGGGTGAGAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp CATCTCTCCCTCCAGGCCTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGTACCTGCATGGAGACTaGCCGAGGCTCTTCTGTAAC +
Preference number: 5 (lower is better)
Translates to: HLSLQAFSAPILAEGPGMYLHGD*PRLFCN
Trigger: GTTACAGAAGAGCCTCGGCAAGTCTCCATGCAGGTA...CATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAGGCCTGGAGGGAGAGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS CCA 90 bp GTGGCTCCTGCTGGAAACTGTCCAAATCTGAGGTCAGCAATAGCCTaGGCATTTCTGGAACCTGGGATATGTCTGGGGGACTTGGGGGTG +
Preference number: 5 (lower is better)
Translates to: VAPAGNCPNLRSAIA*AFLEPGICLGDLGV
Trigger: CACCCCCAAGTCCCCCAGACATATCCCAGGTTCCAGAAATGCCCAGGCTATTGCTGACCTCAGATTTGGACAGTTTCCAGCAGGAGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR CAA 90 bp TTCTCAGCTCTAGTCCAGCCATATGCACTACCTGCATGGAGACTTGCCGAGGCTCCTCCAAGGTGGATGTaGCAGCATCCTCTGCAGCAG +
Preference number: 5 (lower is better)
Translates to: FSALVQPYALPAWRLAEAPPRWM*QHPLQQ
Trigger: CTGCTGCAGAGGATGCTGCAACATCCACCTTGGAGG...AGCCTCGGCAAGTCTCCATGCAGGTAGTGCATATGGCTGGACTAGAGCTGAGAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp AGGAGCAGAGAAGTGCTCCCTCTGGTGGCAAAAGGCAAGTGTTGGATACTGGGCACTGAGGTCAGGAGGTaGCTGTGCAGAACAAGGAGC +
Preference number: 5 (lower is better)
Translates to: RSREVLPLVAKGKCWILGTEVRR*LCRTRS
Trigger: GCTCCTTGTTCTGCACAGCAACCTCCTGACCTCAGT...GCCCAGTATCCAACACTTGCCTTTTGCCACCAGAGGGAGCACTTCTCTGCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR CAA 90 bp GTTGCTCTGAGTCAGGAATCCAGTTTCTGCATCACCCAGGTTCAGAGGCATCAAAGGTCTCGGAGCCGGTaGTCCCTCAGGTCAAGCCGA +
Preference number: 5 (lower is better)
Translates to: VALSQESSFCITQVQRHQRSRSR*SLRSSR
Trigger: TCGGCTTGACCTGAGGGACAACCGGCTCCGAGACCT...TTGATGCCTCTGAACCTGGGTGATGCAGAAACTGGATTCCTGACTCAGAGCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS-3UTR CAA 90 bp CTTCTCTGCTCCCATCTTAGCAGAAGGGCCTGGCATGGTAGCAAGTATGGGCAAATGCTGTCCTGGTACTaGTGGCGGCCAAGCTCCAAG +
Preference number: 5 (lower is better)
Translates to: LLCSHLSRRAWHGSKYGQMLSWY*WRPSSK
Trigger: CTTGGAGCTTGGCCGCCACAAGTACCAGGACAGCAT...TTGCCCATACTTGCTACCATGCCAGGCCCTTCTGCTAAGATGGGAGCAGAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026580.12
CDS GCA 90 bp CAACCAGAGTCGATAGTGGATGGTGACAGGCGTGGTGGTGGCTCCTaGTGGAAACTGTCCAAATCTGAGGTCAGCAATAGCCTGGGCATT +
Preference number: 5 (lower is better)
Translates to: QPESIVDGDRRGGGS*WKLSKSEVSNSLGI
Trigger: AATGCCCAGGCTATTGCTGACCTCAGATTTGGACAGTTTCCAGCAGGAGCCACCACCACGCCTGTCACCATCCACTATCGACTCTGGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS CCA 90 bp CCAGAGTCGATAGTGGATGGTGACAGGCGTGGTGGTGGCTCCTGCTaGAAACTGTCCAAATCTGAGGTCAGCAATAGCCTGGGCATTTCT +
Preference number: 5 (lower is better)
Translates to: PESIVDGDRRGGGSC*KLSKSEVSNSLGIS
Trigger: AGAAATGCCCAGGCTATTGCTGACCTCAGATTTGGACAGTTTCCAGCAGGAGCCACCACCACGCCTGTCACCATCCACTATCGACTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS TCA 90 bp TCAGAGGGTATGGTGTCTAGAAGGTTCTCAGAGAGATCGAGACGCTaGAGGGTGGACAGGGACCCGAGTGTTAGGGGTAGTCTTTCTAGG +
Preference number: 5 (lower is better)
Translates to: SEGMVSRRFSERSRR*RVDRDPSVRGSLSR
Trigger: CCTAGAAAGACTACCCCTAACACTCGGGTCCCTGTCCACCCTTCAGCGTCTCGATCTCTCTGAGAACCTTCTAGACACCATACCCTCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS CCA 90 bp GTATGGTGTCTAGAAGGTTCTCAGAGAGATCGAGACGCTGAAGGGTaGACAGGGACCCGAGTGTTAGGGGTAGTCTTTCTAGGCGGTTGT +
Preference number: 5 (lower is better)
Translates to: VWCLEGSQRDRDAEG*TGTRVLGVVFLGGC
Trigger: ACAACCGCCTAGAAAGACTACCCCTAACACTCGGGTCCCTGTCCACCCTTCAGCGTCTCGATCTCTCTGAGAACCTTCTAGACACCATAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTACGGCTCTGGCCACCTTaGAGGACCAGGGAGCGAAGG +
Preference number: 5 (lower is better)
Translates to: RALPTGRVKFKAILIKSVRLWPP*RTRERR
Trigger: CCTTCGCTCCCTGGTCCTCAAAGGTGGCCAGAGCCG...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp TCTTCAGGTGTGAATAGAAGACAAAGCAGATTCTGCCATCCACACAGTCTGGACCCTCCAAGGTGGATGTaGCAGCATCCTCTGCAGCAG +
Preference number: 5 (lower is better)
Translates to: SSGVNRRQSRFCHPHSLDPPRWM*QHPLQQ
Trigger: CTGCTGCAGAGGATGCTGCAACATCCACCTTGGAGG...GTCCAGACTGTGTGGATGGCAGAATCTGCTTTGTCTTCTATTCACACCTGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTACGGTTGGAGGCCAGATaGAGCTCACTGAGGCTGCGC +
Preference number: 5 (lower is better)
Translates to: RALPTGRVKFKAILIKSVRLEAR*SSLRLR
Trigger: GCGCAGCCTCAGTGAGCTCAATCTGGCCTCCAACCG...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp GCCTGGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTTATGTAAAACAAGACTCTGCAGCCGGTaGGAGGCCAGATTGAGCTCA +
Preference number: 5 (lower is better)
Translates to: AWHGSKYGQPALYPLCKTRLCSR*EARLSS
Trigger: TGAGCTCAATCTGGCCTCCAACCGGCTGCAGAGTCT...TGTTTTACATAAAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR CAA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTAGGTCTCGGAGCCGGTaGTCCCTCAGGTCAAGCCGA +
Preference number: 5 (lower is better)
Translates to: DRALPTGRVKFKAILIKSRSRSR*SLRSSR
Trigger: TCGGCTTGACCTGAGGGACAACCGGCTCCGAGACCT...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR CAA 90 bp CCTGGCATGGTAGCAAGTATGGGCAACCTGCTCTCTATCCTTTATGTAAAACAACCTCCAAGGTGGATGTaGCAGCATCCTCTGCAGCAG +
Preference number: 5 (lower is better)
Translates to: PGMVASMGNLLSILYVKQPPRWM*QHPLQQ
Trigger: CTGCTGCAGAGGATGCTGCAACATCCACCTTGGAGG...TTGTTTTACATAAAGGATAGAGAGCAGGTTGCCCATACTTGCTACCATGCCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
ENSMUST00000190068.7
CDS-3UTR CAA 90 bp CAGGTAGGTAGAGGAAACAAACTAGGTTCCCTGAAGGAGCAGCTAGTGTTGTTAACTGAGGTCAGGAGGTaGCTGTGCAGAACAAGGAGC +
Preference number: 5 (lower is better)
Translates to: QVGRGNKLGSLKEQLVLLTEVRR*LCRTRS
Trigger: GCTCCTTGTTCTGCACAGCAACCTCCTGACCTCAGT...TAACAACACTAGCTGCTCCTTCAGGGAACCTAGTTTGTTTCCTCTACCTACCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000128703.8
CDS-3UTR CAA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCCCTCCAAGGTGGATGTaGCAGCATCCTCTGCAGCAG +
Preference number: 5 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSPPRWM*QHPLQQ
Trigger: CTGCTGCAGAGGATGCTGCAACATCCACCTTGGAGG...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTAGACTCTGCAGCCGGTaGGAGGCCAGATTGAGCTCA +
Preference number: 5 (lower is better)
Translates to: DRALPTGRVKFKAILIKSRLCSR*EARLSS
Trigger: TGAGCTCAATCTGGCCTCCAACCGGCTGCAGAGTCT...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS-3UTR CAA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAATGCTGTCCTGGTACTaGTGGCGGCCAAGCTCCAAG +
Preference number: 5 (lower is better)
Translates to: RALPTGRVKFKAILIKSVMLSWY*WRPSSK
Trigger: CTTGGAGCTTGGCCGCCACAAGTACCAGGACAGCAT...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CAA 90 bp GATAGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTACTGAGGTCAGGAGGTaGCTGTGCAGAACAAGGAGC +
Preference number: 5 (lower is better)
Translates to: DRALPTGRVKFKAILIKSTEVRR*LCRTRS
Trigger: GCTCCTTGTTCTGCACAGCAACCTCCTGACCTCAGT...AGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCTATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
CDS-3UTR CAA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTATACCTGCATGGAGACTaGCCGAGGCTCTTCTGTAAC +
Preference number: 5 (lower is better)
Translates to: RALPTGRVKFKAILIKSVYLHGD*PRLFCN
Trigger: GTTACAGAAGAGCCTCGGCAAGTCTCCATGCAGGTA...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CAA 90 bp GCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTAAGCTATCATCCCAGGTGGTaGTCAGGGGTGTTCGGTAGA +
Preference number: 5 (lower is better)
Translates to: ALPTGRVKFKAILIKSVSYHPRW*SGVFGR
Trigger: TCTACCGAACACCCCTGACAACCACCTGGGATGATA...GCTTACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS-3UTR CAA 90 bp AGGGCTCTGCCCACTGGTCGAGTCAAGTTTAAAGCTATCTTAATTAAGTCTGTATATCATCCCAGGTGGTaGTCAGGGGTGTTCGGTAGA +
Preference number: 5 (lower is better)
Translates to: RALPTGRVKFKAILIKSVYHPRW*SGVFGR
Trigger: TCTACCGAACACCCCTGACAACCACCTGGGATGATA...TACAGACTTAATTAAGATAGCTTTAAACTTGACTCGACCAGTGGGCAGAGCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
CDS CAA 90 bp GTTCCATGGAGGCAGGCACCCAGGGCACCCCGGCTCTGGCCACCTTaGAGGACCAGGGAGCGAAGGCGCAGCAGACTCCACGGAACCTTG +
Preference number: 6 (lower is better)
Translates to: VPWRQAPRAPRLWPP*RTRERRRSRLHGTL
Trigger: CAAGGTTCCGTGGAGTCTGCTGCGCCTTCGCTCCCTGGTCCTCAAAGGTGGCCAGAGCCGGGGTGCCCTGGGTGCCTGCCTCCATGGAAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS CAA 90 bp GAAAAGGTGCTCCAGGCCCGGCATCCACAGCCTCCAAGGTGGATGTaGCAGCATCCTCTGCAGCAGCTGCAGTTTCCTCCGGCTCCTGCC +
Preference number: 6 (lower is better)
Translates to: EKVLQARHPQPPRWM*QHPLQQLQFPPAPA
Trigger: GGCAGGAGCCGGAGGAAACTGCAGCTGCTGCAGAGGATGCTGCAACATCCACCTTGGAGGCTGTGGATGCCGGGCCTGGAGCACCTTTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS CAA 90 bp AGGGTGGACAGGGACCCGAGTGTTAGGGGTAGTCTTTCTAGGCGGTaGTGTGTCACGGTGAGGAAGGTAAGGGCGGGCAGTGCCCCCAGG +
Preference number: 6 (lower is better)
Translates to: RVDRDPSVRGSLSRR*CVTVRKVRAGSAPR
Trigger: CCTGGGGGCACTGCCCGCCCTTACCTTCCTCACCGTGACACACAACCGCCTAGAAAGACTACCCCTAACACTCGGGTCCCTGTCCACCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS TCA 72 bp GGCAGCGTCTCCAGCCTGTTGAAGCTCAGGTCTAGGTaGGCCAGGCAGGCCAAATCACTCAGGCCAGCAGGC +
Preference number: 6 (lower is better)
Translates to: GSVSSLLKLRSR*ARQAKSLRPAG
Trigger: GCCTGCTGGCCTGAGTGATTTGGCCTGCCTGGCTCACCTAGACCTGAGCTTCAACAGGCTGGAGACGCTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS TCA 72 bp GGCCTGGCTCGGGCAACCAGAGTCGATAGTGGATGGTaGCAGGCGTGGTGGTGGCTCCTGCTGGAAACTGTC +
Preference number: 6 (lower is better)
Translates to: GLARATRVDSGW*QAWWWLLLETV
Trigger: GACAGTTTCCAGCAGGAGCCACCACCACGCCTGTCACCATCCACTATCGACTCTGGTTGCCCGAGCCAGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS GCA 72 bp TCCAGGCCCGGCATCCACAGCCTCCAAGGTGGATGTTaGAGCATCCTCTGCAGCAGCTGCAGTTTCCTCCGG +
Preference number: 6 (lower is better)
Translates to: SRPGIHSLQGGC*SILCSSCSFLR
Trigger: CCGGAGGAAACTGCAGCTGCTGCAGAGGATGCTGCAACATCCACCTTGGAGGCTGTGGATGCCGGGCCTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS CCA 72 bp CCAGGGAGCGAAGGCGCAGCAGACTCCACGGAACCTTaGCTAGGGTGTCATCCAGCAGCTGAGGGTCCTCAT +
Preference number: 6 (lower is better)
Translates to: PGSEGAADSTEP*LGCHPAAEGPH
Trigger: ATGAGGACCCTCAGCTGCTGGATGACACCCTAGCCAAGGTTCCGTGGAGTCTGCTGCGCCTTCGCTCCCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS CAA 72 bp CTCCAGGCCCGGCATCCACAGCCTCCAAGGTGGATGTaGCAGCATCCTCTGCAGCAGCTGCAGTTTCCTCCG +
Preference number: 6 (lower is better)
Translates to: LQARHPQPPRWM*QHPLQQLQFPP
Trigger: CGGAGGAAACTGCAGCTGCTGCAGAGGATGCTGCAACATCCACCTTGGAGGCTGTGGATGCCGGGCCTGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS TCA 72 bp GGGTGTCATCCAGCAGCTGAGGGTCCTCATGGGTGCTaGGCCGCAAAAACTCCACTTGCAGCAGCTGTGGGG +
Preference number: 6 (lower is better)
Translates to: GCHPAAEGPHGC*AAKTPLAAAVG
Trigger: CCCCACAGCTGCTGCAAGTGGAGTTTTTGCGGCTCAGCACCCATGAGGACCCTCAGCTGCTGGATGACACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS GCA 72 bp CTCCAAGGTGGATGTTGCAGCATCCTCTGCAGCAGCTaGAGTTTCCTCCGGCTCCTGCCCCTCCAACACTGC +
Preference number: 6 (lower is better)
Translates to: LQGGCCSILCSS*SFLRLLPLQHC
Trigger: GCAGTGTTGGAGGGGCAGGAGCCGGAGGAAACTGCAGCTGCTGCAGAGGATGCTGCAACATCCACCTTGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS GCA 72 bp GTCCAAGTTCAACTGGTTCCCAGCCGGGAGAAAAGGTaGTCCAGGCCCGGCATCCACAGCCTCCAAGGTGGA +
Preference number: 6 (lower is better)
Translates to: VQVQLVPSREKR*SRPGIHSLQGG
Trigger: TCCACCTTGGAGGCTGTGGATGCCGGGCCTGGAGCACCTTTTCTCCCGGCTGGGAACCAGTTGAACTTGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS GCA 72 bp GGGTCCTCATGGGTGCTGAGCCGCAAAAACTCCACTTaGAGCAGCTGTGGGGGCTGCTGGGAACACAGGTAC +
Preference number: 6 (lower is better)
Translates to: GSSWVLSRKNST*SSCGGCWEHRY
Trigger: GTACCTGTGTTCCCAGCAGCCCCCACAGCTGCTGCAAGTGGAGTTTTTGCGGCTCAGCACCCATGAGGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS TCA 72 bp CTCCACGGAACCTTGGCTAGGGTGTCATCCAGCAGCTaGGGGTCCTCATGGGTGCTGAGCCGCAAAAACTCC +
Preference number: 6 (lower is better)
Translates to: LHGTLARVSSSS*GSSWVLSRKNS
Trigger: GGAGTTTTTGCGGCTCAGCACCCATGAGGACCCTCAGCTGCTGGATGACACCCTAGCCAAGGTTCCGTGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS CCA 72 bp AAGGTGCTCCAGGCCCGGCATCCACAGCCTCCAAGGTaGATGTTGCAGCATCCTCTGCAGCAGCTGCAGTTT +
Preference number: 6 (lower is better)
Translates to: KVLQARHPQPPR*MLQHPLQQLQF
Trigger: AAACTGCAGCTGCTGCAGAGGATGCTGCAACATCCACCTTGGAGGCTGTGGATGCCGGGCCTGGAGCACCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS CAA 72 bp AGGGTCCTCATGGGTGCTGAGCCGCAAAAACTCCACTaGCAGCAGCTGTGGGGGCTGCTGGGAACACAGGTA +
Preference number: 6 (lower is better)
Translates to: RVLMGAEPQKLH*QQLWGLLGTQV
Trigger: TACCTGTGTTCCCAGCAGCCCCCACAGCTGCTGCAAGTGGAGTTTTTGCGGCTCAGCACCCATGAGGACCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS CAA 72 bp AGGGACCCGAGTGTTAGGGGTAGTCTTTCTAGGCGGTaGTGTGTCACGGTGAGGAAGGTAAGGGCGGGCAGT +
Preference number: 6 (lower is better)
Translates to: RDPSVRGSLSRR*CVTVRKVRAGS
Trigger: ACTGCCCGCCCTTACCTTCCTCACCGTGACACACAACCGCCTAGAAAGACTACCCCTAACACTCGGGTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS CAA 72 bp GAAGCTGGGAGACTCTGCAGCCGGTTGGAGGCCAGATaGAGCTCACTGAGGCTGCGCAGGTTTCCAATCTCA +
Preference number: 6 (lower is better)
Translates to: EAGRLCSRLEAR*SSLRLRRFPIS
Trigger: TGAGATTGGAAACCTGCGCAGCCTCAGTGAGCTCAATCTGGCCTCCAACCGGCTGCAGAGTCTCCCAGCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS TCA 72 bp ATGGTGTCTAGAAGGTTCTCAGAGAGATCGAGACGCTaGAGGGTGGACAGGGACCCGAGTGTTAGGGGTAGT +
Preference number: 6 (lower is better)
Translates to: MVSRRFSERSRR*RVDRDPSVRGS
Trigger: ACTACCCCTAACACTCGGGTCCCTGTCCACCCTTCAGCGTCTCGATCTCTCTGAGAACCTTCTAGACACCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS GCA 72 bp TCGATAGTGGATGGTGACAGGCGTGGTGGTGGCTCCTaGTGGAAACTGTCCAAATCTGAGGTCAGCAATAGC +
Preference number: 6 (lower is better)
Translates to: SIVDGDRRGGGS*WKLSKSEVSNS
Trigger: GCTATTGCTGACCTCAGATTTGGACAGTTTCCAGCAGGAGCCACCACCACGCCTGTCACCATCCACTATCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS CCA 72 bp ATAGTGGATGGTGACAGGCGTGGTGGTGGCTCCTGCTaGAAACTGTCCAAATCTGAGGTCAGCAATAGCCTG +
Preference number: 6 (lower is better)
Translates to: IVDGDRRGGGSC*KLSKSEVSNSL
Trigger: CAGGCTATTGCTGACCTCAGATTTGGACAGTTTCCAGCAGGAGCCACCACCACGCCTGTCACCATCCACTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8
CDS CCA 72 bp CTAGAAGGTTCTCAGAGAGATCGAGACGCTGAAGGGTaGACAGGGACCCGAGTGTTAGGGGTAGTCTTTCTA +
Preference number: 6 (lower is better)
Translates to: LEGSQRDRDAEG*TGTRVLGVVFL
Trigger: TAGAAAGACTACCCCTAACACTCGGGTCCCTGTCCACCCTTCAGCGTCTCGATCTCTCTGAGAACCTTCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026580.12
ENSMUST00000106005.9
ENSMUST00000128703.8
ENSMUST00000190068.7
ENSMUST00000190882.7
CDS CCA 72 bp GCTGGAAACTGTCCAAATCTGAGGTCAGCAATAGCCTaGGCATTTCTGGAACCTGGGATATGTCTGGGGGAC +
Preference number: 6 (lower is better)
Translates to: AGNCPNLRSAIA*AFLEPGICLGD
Trigger: GTCCCCCAGACATATCCCAGGTTCCAGAAATGCCCAGGCTATTGCTGACCTCAGATTTGGACAGTTTCCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000128703.8