Pregenerated sensors for PHXR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055108Ensembl transcript IDs: ENSMUST00000060761.7
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CCCAGGGCCTTCTGCTTGCTAGGCAAGTGCTTTACCACTGAACTAAATCCCCAACCGAAAGAAACACAGTaGAGTATATCAGAAGTTCAT | + |
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Preference number: 2 (lower is better) Translates to: PRAFCLLGKCFTTELNPQPKETQ*SISEVH Trigger: ATGAACTTCTGATATACTCCACTGTGTTTCTTTCGG...TTGGGGATTTAGTTCAGTGGTAAAGCACTTGCCTAGCAAGCAGAAGGCCCTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060761.7 |
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| 3UTR-3UTR TCA 90 bp | ATGTATTTAGGTTTGTTTGTTTGTTTGTTTGTTCCCATAGCTGAGGATAGAACCAGAAAGACACAGTTCTaGGTTCAAGACCAGCCTGGT | + |
|
Preference number: 2 (lower is better) Translates to: MYLGLFVCLFVPIAEDRTRKTQF*VQDQPG Trigger: ACCAGGCTGGTCTTGAACTCAGAACTGTGTCTTTCT...GGTTCTATCCTCAGCTATGGGAACAAACAAACAAACAAACAAACCTAAATACAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060761.7 |
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| 3UTR CCA 72 bp | TGTAACCTGGAGATATGCACAATATGTCAGAAGCTTTaGGAGATGGTTAGAAATATCTATGTAAATCCGAAA | + |
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Preference number: 3 (lower is better) Translates to: CNLEICTICQKL*EMVRNIYVNPK Trigger: TTTCGGATTTACATAGATATTTCTAACCATCTCCCAAAGCTTCTGACATATTGTGCATATCTCCAGGTTACA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060761.7 |
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| CDS-3UTR TCA 90 bp | GAAAGAAACACAGTGGAGTATATCAGAAGTTCATTATTAGCCCCACAGTCCCTGAATAGCTGCCCTTGTTaGGCCATCCTTGTATCATAT | + |
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Preference number: 4 (lower is better) Translates to: ERNTVEYIRSSLLAPQSLNSCPC*AILVSY Trigger: ATATGATACAAGGATGGCTCAACAAGGGCAGCTATT...CAGGGACTGTGGGGCTAATAATGAACTTCTGATATACTCCACTGTGTTTCTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060761.7 |
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