Pregenerated sensors for PHOX2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000012520Ensembl transcript IDs: ENSMUST00000012664.11, ENSMUST00000174251.2
Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTCACTTTGGCTGCCAGGACAGTCTGAGTGAGCCATCACTGCAATaGCCAGAGCACAGGGACCTGAGGGGAACCGGGGCCGGACAGGCA | + |
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Preference number: 1 (lower is better) Translates to: SHFGCQDSLSEPSLQ*PEHRDLRGTGAGQA Trigger: TGCCTGTCCGGCCCCGGTTCCCCTCAGGTCCCTGTGCTCTGGTCATTGCAGTGATGGCTCACTCAGACTGTCCTGGCAGCCAAAGTGACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR TCA 90 bp | CATTCTCTGAGACAGACATACACCCGTCACTCAGACACAGCCCCCTaGGAGTGCCCCGAAGTCCAAGCTCACATCCCTTGGGCAGCAGGT | + |
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Preference number: 1 (lower is better) Translates to: HSLRQTYTRHSDTAP*ECPEVQAHIPWAAG Trigger: ACCTGCTGCCCAAGGGATGTGAGCTTGGACTTCGGGGCACTCTCAGGGGGCTGTGTCTGAGTGACGGGTGTATGTCTGTCTCAGAGAATG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR CCA 90 bp | CAGGCCAGAGCAGAGTGTGGGAAATCAGTTGCGCTAATGGCGAGATaGTTTCCAGCGAGGTGGGGACAGGCAAGCAGAGCTCCAGAAAGT | + |
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Preference number: 1 (lower is better) Translates to: QARAECGKSVALMAR*FPARWGQASRAPES Trigger: ACTTTCTGGAGCTCTGCTTGCCTGTCCCCACCTCGCTGGAAACCATCTCGCCATTAGCGCAACTGATTTCCCACACTCTGCTCTGGCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR TCA 90 bp | CCGTCTCTCCCTATCACCTACTTGGGGCCACAGACACACATTCTCTaGGACAGACATACACCCGTCACTCAGACACAGCCCCCTGAGAGT | + |
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Preference number: 1 (lower is better) Translates to: PSLPITYLGPQTHIL*DRHTPVTQTQPPES Trigger: ACTCTCAGGGGGCTGTGTCTGAGTGACGGGTGTATGTCTGTCTCAGAGAATGTGTGTCTGTGGCCCCAAGTAGGTGATAGGGAGAGACGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR TCA 90 bp | AGTACTCTTTCCTATAGAGGAGCCGCAAGACAGTCTGTGCAGTCGTaGGCGAGAGAATTTAGGGGTTCGCAAGACCAAAACCTCAGCGCC | + |
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Preference number: 1 (lower is better) Translates to: STLSYRGAARQSVQS*AREFRGSQDQNLSA Trigger: GGCGCTGAGGTTTTGGTCTTGCGAACCCCTAAATTCTCTCGCTCACGACTGCACAGACTGTCTTGCGGCTCCTCTATAGGAAAGAGTACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR TCA 90 bp | CTACAGGAGGAGTCCAGCTCGGATCACTCAATCAGAAACGCGATCTaGGACACTTTCTGCAAACTTGTGTGTGCCTTCCCCTTGCTGGGT | + |
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Preference number: 1 (lower is better) Translates to: LQEESSSDHSIRNAI*DTFCKLVCAFPLLG Trigger: ACCCAGCAAGGGGAAGGCACACACAAGTTTGCAGAAAGTGTCTCAGATCGCGTTTCTGATTGAGTGATCCGAGCTGGACTCCTCCTGTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR GCA 90 bp | CAGGCATCAGTACTCTTTCCTATAGAGGAGCCGCAAGACAGTCTGTaGAGTCGTGAGCGAGAGAATTTAGGGGTTCGCAAGACCAAAACC | + |
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Preference number: 1 (lower is better) Translates to: QASVLFPIEEPQDSL*SRERENLGVRKTKT Trigger: GGTTTTGGTCTTGCGAACCCCTAAATTCTCTCGCTCACGACTGCACAGACTGTCTTGCGGCTCCTCTATAGGAAAGAGTACTGATGCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR GCA 90 bp | ACGCGATCTGAGACACTTTCTGCAAACTTGTGTGTGCCTTCCCCTTaGTGGGTAAGACTGATTTCTCTGCAGCCAGCTATGTGGACTACA | + |
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Preference number: 1 (lower is better) Translates to: TRSETLSANLCVPSP*WVRLISLQPAMWTT Trigger: TGTAGTCCACATAGCTGGCTGCAGAGAAATCAGTCTTACCCAGCAAGGGGAAGGCACACACAAGTTTGCAGAAAGTGTCTCAGATCGCGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR CCA 90 bp | CGATCTGAGACACTTTCTGCAAACTTGTGTGTGCCTTCCCCTTGCTaGGTAAGACTGATTTCTCTGCAGCCAGCTATGTGGACTACAACT | + |
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Preference number: 1 (lower is better) Translates to: RSETLSANLCVPSPC*VRLISLQPAMWTTT Trigger: AGTTGTAGTCCACATAGCTGGCTGCAGAGAAATCAGTCTTACCCAGCAAGGGGAAGGCACACACAAGTTTGCAGAAAGTGTCTCAGATCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR-3UTR TCA 90 bp | CACGGTTTGCAGAGCTGGAGGGTGAGAAGGGATCTCCTGTACAGGGCATCATCTGAGCCATCACTGCAATaGCCAGAGCACAGGGACCTG | + |
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Preference number: 2 (lower is better) Translates to: HGLQSWRVRRDLLYRASSEPSLQ*PEHRDL Trigger: CAGGTCCCTGTGCTCTGGTCATTGCAGTGATGGCTC...AGATGATGCCCTGTACAGGAGATCCCTTCTCACCCTCCAGCTCTGCAAACCGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR-3UTR TCA 90 bp | CACGGTTTGCAGAGCTGGAGGGTGAGAAGGGATCTCCTGTACAGGGCATCATCTCCAGGACAGTCTGAGTaGGCCATCACTGCAATGACC | + |
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Preference number: 2 (lower is better) Translates to: HGLQSWRVRRDLLYRASSPGQSE*AITAMT Trigger: GGTCATTGCAGTGATGGCTCACTCAGACTGTCCTGG...AGATGATGCCCTGTACAGGAGATCCCTTCTCACCCTCCAGCTCTGCAAACCGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR-3UTR CCA 90 bp | GAATTATCAATATACAGTCTGTCCACCCTACAGGAGGAGTCCAGCTCGGATCACCCCTTGGGCAGCAGGTaGAGCCCTGTCCTATGCGCA | + |
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Preference number: 2 (lower is better) Translates to: ELSIYSLSTLQEESSSDHPLGSR*SPVLCA Trigger: TGCGCATAGGACAGGGCTCCACCTGCTGCCCAAGGG...GTGATCCGAGCTGGACTCCTCCTGTAGGGTGGACAGACTGTATATTGATAATTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR-3UTR TCA 90 bp | TCTCTCAGGGCCAAGCGGCTGCGAAGATTAGGGTTCAGGCCAGAGCAGAGTGTGGCAGCCCAAGGCAGGTaGAGATTTTTGTTTGTTTTG | + |
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Preference number: 2 (lower is better) Translates to: SLRAKRLRRLGFRPEQSVAAQGR*RFLFVL Trigger: CAAAACAAACAAAAATCTTCACCTGCCTTGGGCTGC...CACACTCTGCTCTGGCCTGAACCCTAATCTTCGCAGCCGCTTGGCCCTGAGAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR-3UTR CCA 90 bp | TTCCCCTTGCTGGGTAAGACTGATTTCTCTGCAGCCAGCTATGTGGACTACAACAAGAAGTCACTGAGTTaGTTGTGGTGCCCCCGTCTC | + |
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Preference number: 2 (lower is better) Translates to: FPLLGKTDFSAASYVDYNKKSLS*LWCPRL Trigger: GAGACGGGGGCACCACAACCAACTCAGTGACTTCTT...GTTGTAGTCCACATAGCTGGCTGCAGAGAAATCAGTCTTACCCAGCAAGGGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR-3UTR CCA 90 bp | AAGGAATTATCAATATACAGTCTGTCCACCCTACAGGAGGAGTCCAGCTCGGATGCGCTAATGGCGAGATaGTTTCCAGCGAGGTGGGGA | + |
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Preference number: 2 (lower is better) Translates to: KELSIYSLSTLQEESSSDALMAR*FPARWG Trigger: TCCCCACCTCGCTGGAAACCATCTCGCCATTAGCGC...ATCCGAGCTGGACTCCTCCTGTAGGGTGGACAGACTGTATATTGATAATTCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR CAA 90 bp | CGGATCACTCAATCAGAAACGCGATCTGAGACACTTTCTGCAAACTaGTGTGTGCCTTCCCCTTGCTGGGTAAGACTGATTTCTCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: RITQSETRSETLSAN*CVPSPCWVRLISLQ Trigger: CTGCAGAGAAATCAGTCTTACCCAGCAAGGGGAAGGCACACACAAGTTTGCAGAAAGTGTCTCAGATCGCGTTTCTGATTGAGTGATCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR-3UTR CCA 90 bp | GAATTATCAATATACAGTCTGTCCACCCTACAGGAGGAGTCCAGCTCGGATCACGGAGTGGGGTTGAAATaGAGCGACGTCATTTTCTCG | + |
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Preference number: 2 (lower is better) Translates to: ELSIYSLSTLQEESSSDHGVGLK*SDVIFS Trigger: CGAGAAAATGACGTCGCTCCATTTCAACCCCACTCC...GTGATCCGAGCTGGACTCCTCCTGTAGGGTGGACAGACTGTATATTGATAATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR-3UTR GCA 90 bp | GAATTATCAATATACAGTCTGTCCACCCTACAGGAGGAGTCCAGCTCGGATCACGTGTGGGAAATCAGTTaGGCTAATGGCGAGATGGTT | + |
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Preference number: 2 (lower is better) Translates to: ELSIYSLSTLQEESSSDHVWEIS*ANGEMV Trigger: AACCATCTCGCCATTAGCGCAACTGATTTCCCACAC...GTGATCCGAGCTGGACTCCTCCTGTAGGGTGGACAGACTGTATATTGATAATTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR-3UTR CCA 90 bp | ATAGAAGGAATTATCAATATACAGTCTGTCCACCCTACAGGAGGAGTCCAGCTCTCCAGAAAGTCACTTTaGCTGCCAGGACAGTCTGAG | + |
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Preference number: 2 (lower is better) Translates to: IEGIINIQSVHPTGGVQLSRKSL*LPGQSE Trigger: CTCAGACTGTCCTGGCAGCCAAAGTGACTTTCTGGA...GAGCTGGACTCCTCCTGTAGGGTGGACAGACTGTATATTGATAATTCCTTCTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR TCA 72 bp | GGCTGCCAGGACAGTCTGAGTGAGCCATCACTGCAATaGCCAGAGCACAGGGACCTGAGGGGAACCGGGGCC | + |
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Preference number: 3 (lower is better) Translates to: GCQDSLSEPSLQ*PEHRDLRGTGA Trigger: GGCCCCGGTTCCCCTCAGGTCCCTGTGCTCTGGTCATTGCAGTGATGGCTCACTCAGACTGTCCTGGCAGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR TCA 72 bp | GTGAGCCATCACTGCAATGACCAGAGCACAGGGACCTaGGGGGAACCGGGGCCGGACAGGCATCAGTACTCT | + |
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Preference number: 3 (lower is better) Translates to: VSHHCNDQSTGT*GEPGPDRHQYS Trigger: AGAGTACTGATGCCTGTCCGGCCCCGGTTCCCCTCAGGTCCCTGTGCTCTGGTCATTGCAGTGATGGCTCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR TCA 72 bp | AGACAGACATACACCCGTCACTCAGACACAGCCCCCTaGGAGTGCCCCGAAGTCCAAGCTCACATCCCTTGG | + |
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Preference number: 3 (lower is better) Translates to: RQTYTRHSDTAP*ECPEVQAHIPW Trigger: CCAAGGGATGTGAGCTTGGACTTCGGGGCACTCTCAGGGGGCTGTGTCTGAGTGACGGGTGTATGTCTGTCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR CCA 72 bp | GCAGAGTGTGGGAAATCAGTTGCGCTAATGGCGAGATaGTTTCCAGCGAGGTGGGGACAGGCAAGCAGAGCT | + |
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Preference number: 3 (lower is better) Translates to: AECGKSVALMAR*FPARWGQASRA Trigger: AGCTCTGCTTGCCTGTCCCCACCTCGCTGGAAACCATCTCGCCATTAGCGCAACTGATTTCCCACACTCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR-3UTR CAA 90 bp | AGGAACCTTCTTAGTGCTCACCGACCTTATACCCAGCTAGGGGGACCAGCTCCATCCCAAACCCCTGCTTaGGTGGGAAACACTGCAGTT | + |
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Preference number: 3 (lower is better) Translates to: RNLLSAHRPYTQLGGPAPSQTPA*VGNTAV Trigger: AACTGCAGTGTTTCCCACCAAAGCAGGGGTTTGGGA...TGGAGCTGGTCCCCCTAGCTGGGTATAAGGTCGGTGAGCACTAAGAAGGTTCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| 3UTR CCA 72 bp | TCAGTTGCGCTAATGGCGAGATGGTTTCCAGCGAGGTaGGGACAGGCAAGCAGAGCTCCAGAAAGTCACTTT | + |
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Preference number: 3 (lower is better) Translates to: SVALMARWFPAR*GQASRAPESHF Trigger: AAAGTGACTTTCTGGAGCTCTGCTTGCCTGTCCCCACCTCGCTGGAAACCATCTCGCCATTAGCGCAACTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR TCA 72 bp | TCCTATAGAGGAGCCGCAAGACAGTCTGTGCAGTCGTaGGCGAGAGAATTTAGGGGTTCGCAAGACCAAAAC | + |
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Preference number: 3 (lower is better) Translates to: SYRGAARQSVQS*AREFRGSQDQN Trigger: GTTTTGGTCTTGCGAACCCCTAAATTCTCTCGCTCACGACTGCACAGACTGTCTTGCGGCTCCTCTATAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR GCA 72 bp | GTACTCTTTCCTATAGAGGAGCCGCAAGACAGTCTGTaGAGTCGTGAGCGAGAGAATTTAGGGGTTCGCAAG | + |
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Preference number: 3 (lower is better) Translates to: VLFPIEEPQDSL*SRERENLGVRK Trigger: CTTGCGAACCCCTAAATTCTCTCGCTCACGACTGCACAGACTGTCTTGCGGCTCCTCTATAGGAAAGAGTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR CCA 72 bp | GGGGGACCAGCTCCAGAAAGCACCTTTGCTCCCAATTaGTTAGCTATAGTAAGGTGCGGGTTTCTGACTCTA | + |
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Preference number: 3 (lower is better) Translates to: GGPAPESTFAPN*LAIVRCGFLTL Trigger: TAGAGTCAGAAACCCGCACCTTACTATAGCTAACCAATTGGGAGCAAAGGTGCTTTCTGGAGCTGGTCCCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| 3UTR-3UTR CAA 90 bp | CTTTCTGCAAACTTGTGTGTGCCTTCCCCTTGCTGGGTAAGACTGATTTCTCTGCTCCCTATCACCTACTaGGGGCCACAGACACACATT | + |
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Preference number: 3 (lower is better) Translates to: LSANLCVPSPCWVRLISLLPITY*GPQTHI Trigger: AATGTGTGTCTGTGGCCCCAAGTAGGTGATAGGGAG...CAGAGAAATCAGTCTTACCCAGCAAGGGGAAGGCACACACAAGTTTGCAGAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR CCA 72 bp | ACACTTTCTGCAAACTTGTGTGTGCCTTCCCCTTGCTaGGTAAGACTGATTTCTCTGCAGCCAGCTATGTGG | + |
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Preference number: 3 (lower is better) Translates to: TLSANLCVPSPC*VRLISLQPAMW Trigger: CCACATAGCTGGCTGCAGAGAAATCAGTCTTACCCAGCAAGGGGAAGGCACACACAAGTTTGCAGAAAGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR CCA 72 bp | TGCTGGGTAAGACTGATTTCTCTGCAGCCAGCTATGTaGACTACAACTGACTCCAATGCAAAGCAGTGCCAA | + |
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Preference number: 3 (lower is better) Translates to: CWVRLISLQPAM*TTTDSNAKQCQ Trigger: TTGGCACTGCTTTGCATTGGAGTCAGTTGTAGTCCACATAGCTGGCTGCAGAGAAATCAGTCTTACCCAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR-3UTR CAA 90 bp | ATAGAAGGAATTATCAATATACAGTCTGTCCACCCTACAGGAGGAGTCCAGCTCAACATGAGACACGGTTaGCAGAGCTGGAGGGTGAGA | + |
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Preference number: 3 (lower is better) Translates to: IEGIINIQSVHPTGGVQLNMRHG*QSWRVR Trigger: TCTCACCCTCCAGCTCTGCAAACCGTGTCTCATGTT...GAGCTGGACTCCTCCTGTAGGGTGGACAGACTGTATATTGATAATTCCTTCTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR-3UTR CAA 90 bp | AGGAAATCAGACAGACATGCACCTGATAACAAAAATATATACCATTGTCTGAACAAGTCACTGAGTTGGTaGTGGTGCCCCCGTCTCTCC | + |
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Preference number: 3 (lower is better) Translates to: RKSDRHAPDNKNIYHCLNKSLSW*WCPRLS Trigger: GGAGAGACGGGGGCACCACAACCAACTCAGTGACTT...GTTCAGACAATGGTATATATTTTTGTTATCAGGTGCATGTCTGTCTGATTTCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR TCA 72 bp | AGGAGACGGTCTGTACTGAGAGTAACACGATACAATTaGGTCACAGAACACAGCTGTAGAAAGACACCGAAA | + |
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Preference number: 3 (lower is better) Translates to: RRRSVLRVTRYN*VTEHSCRKTPK Trigger: TTTCGGTGTCTTTCTACAGCTGTGTTCTGTGACTCAATTGTATCGTGTTACTCTCAGTACAGACCGTCTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| 3UTR TCA 72 bp | CGGGTTTCTGACTCTAATGGAGTAACAACCCCTTCGTaGATCTATTTCAAGTCCTGGTTACTAGGAAATTAC | + |
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Preference number: 3 (lower is better) Translates to: RVSDSNGVTTPS*IYFKSWLLGNY Trigger: GTAATTTCCTAGTAACCAGGACTTGAAATAGATTCACGAAGGGGTTGTTACTCCATTAGAGTCAGAAACCCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| 3UTR TCA 72 bp | AACCTGGTCTCTCTAAACACAAAGGAATCGAACCCGTaGGAACCTTATTACGTCATAAAGACACACCATAAA | + |
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Preference number: 3 (lower is better) Translates to: NLVSLNTKESNP*EPYYVIKTHHK Trigger: TTTATGGTGTGTCTTTATGACGTAATAAGGTTCTCACGGGTTCGATTCCTTTGTGTTTAGAGAGACCAGGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR GCA 90 bp | AGCCTTGGGTCTACCCACTCGCCCACTCGCCAGCCCGGGCCCCGGGCTCGCCCGTGCTCTTGGCCTCTTTaGTCTCGTCGTCCCGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: SLGSTHSPTRQPGPRARPCSWPL*SRRPGR Trigger: CCTCCCGGGACGACGAGAGCAAAGAGGCCAAGAGCA...CGGGCGAGCCCGGGGCCCGGGCTGGCGAGTGGGCGAGTGGGTAGACCCAAGGCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CCA 90 bp | ACAGCAGCGACACTAGCCTTGGGTCTACCCACTCGCCCACTCGCCAGCCCGGGCCGGAGGAGCCGTTTTTaGCGGCGGCGGCAGCAGCGG | + |
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Preference number: 4 (lower is better) Translates to: TAATLALGLPTRPLASPGRRSRF*RRRQQR Trigger: CCGCTGCTGCCGCCGCCGCCAAAAACGGCTCCTCCG...GCCCGGGCTGGCGAGTGGGCGAGTGGGTAGACCCAAGGCTAGTGTCGCTGCTGT 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CCA 90 bp | AGCCTTGGGTCTACCCACTCGCCCACTCGCCAGCCCGGGCCCCGGGCTCGCCCGTCACTAAGGCGGCTTTaGCACCGTTGGGTCTTTGGA | + |
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Preference number: 4 (lower is better) Translates to: SLGSTHSPTRQPGPRARPSLRRL*HRWVFG Trigger: TCCAAAGACCCAACGGTGCCAAAGCCGCCTTAGTGA...CGGGCGAGCCCGGGGCCCGGGCTGGCGAGTGGGCGAGTGGGTAGACCCAAGGCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR GCA 90 bp | CTCAGACACAGCCCCCTGAGAGTGCCCCGAAGTCCAAGCTCACATCCCTTGGGCTGCAGCCGCTGCAGCTaGAGCAGCAGCCGCAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: LRHSPLRVPRSPSSHPLGCSRCS*SSSRSR Trigger: GCGGCTGCGGCTGCTGCTGCAGCTGCAGCGGCTGCA...GCCCAAGGGATGTGAGCTTGGACTTCGGGGCACTCTCAGGGGGCTGTGTCTGAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR TCA 90 bp | ACAGCAGCGACACTAGCCTTGGGTCTACCCACTCGCCCACTCGCCAGCCCGGGCGGCCGCCGTGGTCGGTaGAGAGTTTGTATGGAACTG | + |
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Preference number: 4 (lower is better) Translates to: TAATLALGLPTRPLASPGGRRGR*RVCMEL Trigger: CAGTTCCATACAAACTCTTCACCGACCACGGCGGCC...GCCCGGGCTGGCGAGTGGGCGAGTGGGTAGACCCAAGGCTAGTGTCGCTGCTGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CCA 90 bp | ACAGCAGCGACACTAGCCTTGGGTCTACCCACTCGCCCACTCGCCAGCCCGGGCACGGGCAACCGGACGTaGCCCCAAAAGTGGTCCTTA | + |
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Preference number: 4 (lower is better) Translates to: TAATLALGLPTRPLASPGTGNRT*PQKWSL Trigger: TAAGGACCACTTTTGGGGCCACGTCCGGTTGCCCGT...GCCCGGGCTGGCGAGTGGGCGAGTGGGTAGACCCAAGGCTAGTGTCGCTGCTGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CCA 90 bp | ACAGCAGCGACACTAGCCTTGGGTCTACCCACTCGCCCACTCGCCAGCCCGGGCGCACCGTTGGGTCTTTaGAGCGAAGATAAGACGCTG | + |
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Preference number: 4 (lower is better) Translates to: TAATLALGLPTRPLASPGAPLGL*SEDKTL Trigger: CAGCGTCTTATCTTCGCTCCAAAGACCCAACGGTGC...GCCCGGGCTGGCGAGTGGGCGAGTGGGTAGACCCAAGGCTAGTGTCGCTGCTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR GCA 90 bp | AGGGTTCAGGCCAGAGCAGAGTGTGGGAAATCAGTTGCGCTAATGGCGAGATGGGTCCCGGGCCCCCAGTaGTGTCGGGATCAGTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: RVQARAECGKSVALMARWVPGPQ*CRDQCS Trigger: AGAGCACTGATCCCGACAGCACTGGGGGCCCGGGAC...CCATCTCGCCATTAGCGCAACTGATTTCCCACACTCTGCTCTGGCCTGAACCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CCA 90 bp | CTTCTTAGTGCTCACCGACCTTATACCCAGCTAGGGGGACCAGCTCCAGAAAGCGCGTACGGACTGCTCTaGTGGTCCCTGAGGGTGCCC | + |
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Preference number: 4 (lower is better) Translates to: LLSAHRPYTQLGGPAPESAYGLL*WSLRVP Trigger: GGGCACCCTCAGGGACCACCAGAGCAGTCCGTACGC...GCTTTCTGGAGCTGGTCCCCCTAGCTGGGTATAAGGTCGGTGAGCACTAAGAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| CDS-3UTR CCA 90 bp | AGGAACCTTCTTAGTGCTCACCGACCTTATACCCAGCTAGGGGGACCAGCTCCATACGGACTGCTCTGGTaGTCCCTGAGGGTGCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: RNLLSAHRPYTQLGGPAPYGLLW*SLRVPR Trigger: CCTGGGCACCCTCAGGGACCACCAGAGCAGTCCGTA...TGGAGCTGGTCCCCCTAGCTGGGTATAAGGTCGGTGAGCACTAAGAAGGTTCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| CDS-3UTR CCA 90 bp | CCCCGAAGTCCAAGCTCACATCCCTTGGGCAGCAGGTGGAGCCCTGTCCTATGCTCGTTGAGGCCGCCGTaGTCGGTGAAGAGTTTGTAT | + |
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Preference number: 4 (lower is better) Translates to: PRSPSSHPLGSRWSPVLCSLRPP*SVKSLY Trigger: ATACAAACTCTTCACCGACCACGGCGGCCTCAACGA...GCATAGGACAGGGCTCCACCTGCTGCCCAAGGGATGTGAGCTTGGACTTCGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CCA 90 bp | AGGAACCTTCTTAGTGCTCACCGACCTTATACCCAGCTAGGGGGACCAGCTCCATCGGTCTCCCGTACCTaGACTCTCGCCTCGGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: RNLLSAHRPYTQLGGPAPSVSRT*TLASVR Trigger: CCTCACCGAGGCGAGAGTCCAGGTACGGGAGACCGA...TGGAGCTGGTCCCCCTAGCTGGGTATAAGGTCGGTGAGCACTAAGAAGGTTCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| CDS-3UTR TCA 90 bp | GAATTATCAATATACAGTCTGTCCACCCTACAGGAGGAGTCCAGCTCGGATCACTGCAGGATCCCGGCGTaGGGGACGGGCAACCGGACG | + |
|
Preference number: 4 (lower is better) Translates to: ELSIYSLSTLQEESSSDHCRIPA*GTGNRT Trigger: CGTCCGGTTGCCCGTCCCTCACGCCGGGATCCTGCA...GTGATCCGAGCTGGACTCCTCCTGTAGGGTGGACAGACTGTATATTGATAATTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CCA 90 bp | GAGACACGGTTTGCAGAGCTGGAGGGTGAGAAGGGATCTCCTGTACAGGGCATCTTCTGGAACCACACCTaGACTCTCGCCTCGGTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: ETRFAELEGEKGSPVQGIFWNHT*TLASVR Trigger: CCTCACCGAGGCGAGAGTCCAGGTGTGGTTCCAGAA...GATGCCCTGTACAGGAGATCCCTTCTCACCCTCCAGCTCTGCAAACCGTGTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR TCA 90 bp | GAGATGGTTTCCAGCGAGGTGGGGACAGGCAAGCAGAGCTCCAGAAAGTCACTTGGACTCTCGCCTCGGTaGGGTCGATCTTCAGTGCTA | + |
|
Preference number: 4 (lower is better) Translates to: EMVSSEVGTGKQSSRKSLGLSPR*GRSSVL Trigger: TAGCACTGAAGATCGACCTCACCGAGGCGAGAGTCC...AAGTGACTTTCTGGAGCTCTGCTTGCCTGTCCCCACCTCGCTGGAAACCATCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR TCA 90 bp | CTTCTTAGTGCTCACCGACCTTATACCCAGCTAGGGGGACCAGCTCCAGAAAGCGGACTCTCGCCTCGGTaGGGTCGATCTTCAGTGCTA | + |
|
Preference number: 4 (lower is better) Translates to: LLSAHRPYTQLGGPAPESGLSPR*GRSSVL Trigger: TAGCACTGAAGATCGACCTCACCGAGGCGAGAGTCC...GCTTTCTGGAGCTGGTCCCCCTAGCTGGGTATAAGGTCGGTGAGCACTAAGAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| CDS-3UTR CCA 90 bp | CTTCTTAGTGCTCACCGACCTTATACCCAGCTAGGGGGACCAGCTCCAGAAAGCACGGGCAACCGGACGTaGCCCCAAAAGTGGTCCTTA | + |
|
Preference number: 4 (lower is better) Translates to: LLSAHRPYTQLGGPAPESTGNRT*PQKWSL Trigger: TAAGGACCACTTTTGGGGCCACGTCCGGTTGCCCGT...GCTTTCTGGAGCTGGTCCCCCTAGCTGGGTATAAGGTCGGTGAGCACTAAGAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| CDS-3UTR CCA 90 bp | ATAGAAGGAATTATCAATATACAGTCTGTCCACCCTACAGGAGGAGTCCAGCTCGGGTCGGGTTGGGGTTaGGTCCCGGGCCCCCAGTGC | + |
|
Preference number: 4 (lower is better) Translates to: IEGIINIQSVHPTGGVQLGSGWG*VPGPQC Trigger: GCACTGGGGGCCCGGGACCCAACCCCAACCCGACCC...GAGCTGGACTCCTCCTGTAGGGTGGACAGACTGTATATTGATAATTCCTTCTAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CCA 90 bp | TCTCTCAGGGCCAAGCGGCTGCGAAGATTAGGGTTCAGGCCAGAGCAGAGTGTGCGGCTTTGGCACCGTTaGGTCTTTGGAGCGAAGATA | + |
|
Preference number: 4 (lower is better) Translates to: SLRAKRLRRLGFRPEQSVRLWHR*VFGAKI Trigger: TATCTTCGCTCCAAAGACCCAACGGTGCCAAAGCCG...CACACTCTGCTCTGGCCTGAACCCTAATCTTCGCAGCCGCTTGGCCCTGAGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR TCA 90 bp | CTTCTTAGTGCTCACCGACCTTATACCCAGCTAGGGGGACCAGCTCCAGAAAGCCAAATCCCATTTCTGTaGCGGGCCTGGGTCCCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: LLSAHRPYTQLGGPAPESQIPFL*RAWVPL Trigger: CAAAGGGACCCAGGCCCGTCACAGAAATGGGATTTG...GCTTTCTGGAGCTGGTCCCCCTAGCTGGGTATAAGGTCGGTGAGCACTAAGAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| CDS-3UTR GCA 90 bp | GAGACACGGTTTGCAGAGCTGGAGGGTGAGAAGGGATCTCCTGTACAGGGCATCTCCAACTCTTTGAGCTaGGCGCTTGTGAAGGTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: ETRFAELEGEKGSPVQGISNSLS*ALVKVV Trigger: CACCACCTTCACAAGCGCGCAGCTCAAAGAGTTGGA...GATGCCCTGTACAGGAGATCCCTTCTCACCCTCCAGCTCTGCAAACCGTGTCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CCA 90 bp | CTTCTTAGTGCTCACCGACCTTATACCCAGCTAGGGGGACCAGCTCCAGAAAGCTGGAAGCCACTGGCCTaGCTGCAGGAACTGAAGTCT | + |
|
Preference number: 4 (lower is better) Translates to: LLSAHRPYTQLGGPAPESWKPLA*LQELKS Trigger: AGACTTCAGTTCCTGCAGCCAGGCCAGTGGCTTCCA...GCTTTCTGGAGCTGGTCCCCCTAGCTGGGTATAAGGTCGGTGAGCACTAAGAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| CDS-3UTR CCA 90 bp | CTCAGCGCCAGCCACAGTCCTCCCTCGTCTCCTTTGTATTTTCAAATTATTCCCTACGGACTGCTCTGGTaGTCCCTGAGGGTGCCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LSASHSPPSSPLYFQIIPYGLLW*SLRVPR Trigger: CCTGGGCACCCTCAGGGACCACCAGAGCAGTCCGTA...GGGAATAATTTGAAAATACAAAGGAGACGAGGGAGGACTGTGGCTGGCGCTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
||
| CDS-3UTR TCA 90 bp | AGGGTTCAGGCCAGAGCAGAGTGTGGGAAATCAGTTGCGCTAATGGCGAGATGGCCTGGCTGCAGGAACTaGAGTCTGCATATGCTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: RVQARAECGKSVALMARWPGCRN*SLHMLK Trigger: CTTCAGCATATGCAGACTTCAGTTCCTGCAGCCAGG...CCATCTCGCCATTAGCGCAACTGATTTCCCACACTCTGCTCTGGCCTGAACCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
||
| CDS-3UTR TCA 90 bp | AGGAACCTTCTTAGTGCTCACCGACCTTATACCCAGCTAGGGGGACCAGCTCCACCTGGCTGCAGGAACTaGAGTCTGCATATGCTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: RNLLSAHRPYTQLGGPAPPGCRN*SLHMLK Trigger: CTTCAGCATATGCAGACTTCAGTTCCTGCAGCCAGG...TGGAGCTGGTCCCCCTAGCTGGGTATAAGGTCGGTGAGCACTAAGAAGGTTCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
||
| CDS-3UTR TCA 90 bp | TCAAACTCCCAAACCCCTGCTTTGGTGGGAAACACTGCAGTTGTGAATAAATTATGCAGGATCCCGGCGTaGGGGACGGGCAACCGGACG | + |
|
Preference number: 4 (lower is better) Translates to: SNSQTPALVGNTAVVNKLCRIPA*GTGNRT Trigger: CGTCCGGTTGCCCGTCCCTCACGCCGGGATCCTGCA...TAATTTATTCACAACTGCAGTGTTTCCCACCAAAGCAGGGGTTTGGGAGTTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| CDS-3UTR GCA 90 bp | AGGAACCTTCTTAGTGCTCACCGACCTTATACCCAGCTAGGGGGACCAGCTCCATCCAACTCTTTGAGCTaGGCGCTTGTGAAGGTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: RNLLSAHRPYTQLGGPAPSNSLS*ALVKVV Trigger: CACCACCTTCACAAGCGCGCAGCTCAAAGAGTTGGA...TGGAGCTGGTCCCCCTAGCTGGGTATAAGGTCGGTGAGCACTAAGAAGGTTCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
||
| CDS-3UTR GCA 90 bp | AGGGTTCAGGCCAGAGCAGAGTGTGGGAAATCAGTTGCGCTAATGGCGAGATGGTGCTGTCGGGATCAGTaGTCTTGGCCTCTTTGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: RVQARAECGKSVALMARWCCRDQ*SWPLCS Trigger: AGAGCAAAGAGGCCAAGAGCACTGATCCCGACAGCA...CCATCTCGCCATTAGCGCAACTGATTTCCCACACTCTGCTCTGGCCTGAACCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CCA 90 bp | AAGGAATTATCAATATACAGTCTGTCCACCCTACAGGAGGAGTCCAGCTCGGATGCGTACGGACTGCTCTaGTGGTCCCTGAGGGTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: KELSIYSLSTLQEESSSDAYGLL*WSLRVP Trigger: GGGCACCCTCAGGGACCACCAGAGCAGTCCGTACGC...ATCCGAGCTGGACTCCTCCTGTAGGGTGGACAGACTGTATATTGATAATTCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CCA 90 bp | CTTCTTAGTGCTCACCGACCTTATACCCAGCTAGGGGGACCAGCTCCAGAAAGCTCGTTGAGGCCGCCGTaGTCGGTGAAGAGTTTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: LLSAHRPYTQLGGPAPESSLRPP*SVKSLY Trigger: ATACAAACTCTTCACCGACCACGGCGGCCTCAACGA...GCTTTCTGGAGCTGGTCCCCCTAGCTGGGTATAAGGTCGGTGAGCACTAAGAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| CDS-3UTR CCA 90 bp | ATCAGTTGCGCTAATGGCGAGATGGTTTCCAGCGAGGTGGGGACAGGCAAGCAGACGTGGCCCCAAAAGTaGTCCTTATCGGGTTATACT | + |
|
Preference number: 4 (lower is better) Translates to: ISCANGEMVSSEVGTGKQTWPQK*SLSGYT Trigger: AGTATAACCCGATAAGGACCACTTTTGGGGCCACGT...CTGCTTGCCTGTCCCCACCTCGCTGGAAACCATCTCGCCATTAGCGCAACTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CCA 90 bp | TTCCCCTTGCTGGGTAAGACTGATTTCTCTGCAGCCAGCTATGTGGACTACAACTGGAAGCCACTGGCCTaGCTGCAGGAACTGAAGTCT | + |
|
Preference number: 4 (lower is better) Translates to: FPLLGKTDFSAASYVDYNWKPLA*LQELKS Trigger: AGACTTCAGTTCCTGCAGCCAGGCCAGTGGCTTCCA...GTTGTAGTCCACATAGCTGGCTGCAGAGAAATCAGTCTTACCCAGCAAGGGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CCA 90 bp | AGGAACCTTCTTAGTGCTCACCGACCTTATACCCAGCTAGGGGGACCAGCTCCAACGTGGCCCCAAAAGTaGTCCTTATCGGGTTATACT | + |
|
Preference number: 4 (lower is better) Translates to: RNLLSAHRPYTQLGGPAPTWPQK*SLSGYT Trigger: AGTATAACCCGATAAGGACCACTTTTGGGGCCACGT...TGGAGCTGGTCCCCCTAGCTGGGTATAAGGTCGGTGAGCACTAAGAAGGTTCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| CDS-3UTR CCA 90 bp | TTCCCCTTGCTGGGTAAGACTGATTTCTCTGCAGCCAGCTATGTGGACTACAACCGGGATCAGTGCTCTTaGCCTCTTTGCTCTCGTCGT | + |
|
Preference number: 4 (lower is better) Translates to: FPLLGKTDFSAASYVDYNRDQCS*PLCSRR Trigger: ACGACGAGAGCAAAGAGGCCAAGAGCACTGATCCCG...GTTGTAGTCCACATAGCTGGCTGCAGAGAAATCAGTCTTACCCAGCAAGGGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CCA 90 bp | TCAAACTCCCAAACCCCTGCTTTGGTGGGAAACACTGCAGTTGTGAATAAATTAATGCTGAAGCCAAGCTaGAGGTATCCATCCCGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: SNSQTPALVGNTAVVNKLMLKPS*RYPSRP Trigger: TGGCCGGGATGGATACCTCCAGCTTGGCTTCAGCAT...TAATTTATTCACAACTGCAGTGTTTCCCACCAAAGCAGGGGTTTGGGAGTTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| CDS-3UTR CCA 90 bp | AGGAAATCAGACAGACATGCACCTGATAACAAAAATATATACCATTGTCTGAACATGCTGAAGCCAAGCTaGAGGTATCCATCCCGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: RKSDRHAPDNKNIYHCLNMLKPS*RYPSRP Trigger: TGGCCGGGATGGATACCTCCAGCTTGGCTTCAGCAT...GTTCAGACAATGGTATATATTTTTGTTATCAGGTGCATGTCTGTCTGATTTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CCA 90 bp | AGGAAATCAGACAGACATGCACCTGATAACAAAAATATATACCATTGTCTGAACCTTATCGGGTTATACTaGAAGCCACTGGCCTGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: RKSDRHAPDNKNIYHCLNLIGLY*KPLAWL Trigger: CAGCCAGGCCAGTGGCTTCCAGTATAACCCGATAAG...GTTCAGACAATGGTATATATTTTTGTTATCAGGTGCATGTCTGTCTGATTTCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS GCA 90 bp | GCCTCCCGCCGCCGCAGCCGCAGCCGCCGCTGCAGCCGCTGCAGCTaGAGCAGCAGCCGCAGCCGCACCGCCCTTGCCGGGTTCGCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: ASRRRSRSRRCSRCS*SSSRSRTALAGFAS Trigger: GGAGGCGAACCCGGCAAGGGCGGTGCGGCTGCGGCTGCTGCTGCAGCTGCAGCGGCTGCAGCGGCGGCTGCGGCTGCGGCGGCGGGAGGC 80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS GCA 90 bp | GTCCCGGGCCCCCAGTGCTGTCGGGATCAGTGCTCTTGGCCTCTTTaGTCTCGTCGTCCCGGGAGGAGTCAGACTTCTTCCCGGAGGAGC | + |
|
Preference number: 5 (lower is better) Translates to: VPGPQCCRDQCSWPL*SRRPGRSQTSSRRS Trigger: GCTCCTCCGGGAAGAAGTCTGACTCCTCCCGGGACGACGAGAGCAAAGAGGCCAAGAGCACTGATCCCGACAGCACTGGGGGCCCGGGAC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS GCA 90 bp | TCGGGTTGGGGTTGGGTCCCGGGCCCCCAGTGCTGTCGGGATCAGTaGTCTTGGCCTCTTTGCTCTCGTCGTCCCGGGAGGAGTCAGACT | + |
|
Preference number: 5 (lower is better) Translates to: SGWGWVPGPQCCRDQ*SWPLCSRRPGRSQT Trigger: AGTCTGACTCCTCCCGGGACGACGAGAGCAAAGAGGCCAAGAGCACTGATCCCGACAGCACTGGGGGCCCGGGACCCAACCCCAACCCGA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CAA 90 bp | CACGGTTTGCAGAGCTGGAGGGTGAGAAGGGATCTCCTGTACAGGGCATCATCTCAGCTGGGGGTCGGGTaGGGGTTGGGTCCCGGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: HGLQSWRVRRDLLYRASSQLGVG*GLGPGP Trigger: GGGCCCGGGACCCAACCCCAACCCGACCCCCAGCTG...AGATGATGCCCTGTACAGGAGATCCCTTCTCACCCTCCAGCTCTGCAAACCGTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS CCA 90 bp | TCGGTGAAGAGTTTGTATGGAACTGCGGCGTACGGACTGCTCTGGTaGTCCCTGAGGGTGCCCAGGCTGCAGGATCCCGGCGTGAGGGAC | + |
|
Preference number: 5 (lower is better) Translates to: SVKSLYGTAAYGLLW*SLRVPRLQDPGVRD Trigger: GTCCCTCACGCCGGGATCCTGCAGCCTGGGCACCCTCAGGGACCACCAGAGCAGTCCGTACGCCGCAGTTCCATACAAACTCTTCACCGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012664.11 ENSMUST00000174251.2 |
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| CDS-3UTR CAA 90 bp | CCCCGAAGTCCAAGCTCACATCCCTTGGGCAGCAGGTGGAGCCCTGTCCTATGCTGCTTGCGTTTCTCGTaGAGGCCGCCGTGGTCGGTG | + |
|
Preference number: 5 (lower is better) Translates to: PRSPSSHPLGSRWSPVLCCLRFS*RPPWSV Trigger: CACCGACCACGGCGGCCTCAACGAGAAACGCAAGCA...GCATAGGACAGGGCTCCACCTGCTGCCCAAGGGATGTGAGCTTGGACTTCGGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CAA 90 bp | CACGGTTTGCAGAGCTGGAGGGTGAGAAGGGATCTCCTGTACAGGGCATCATCTCGCCACCGCCGCCATTaGCCCCACAGCTGGGGGTCG | + |
|
Preference number: 5 (lower is better) Translates to: HGLQSWRVRRDLLYRASSRHRRH*PHSWGS Trigger: CGACCCCCAGCTGTGGGGCAAATGGCGGCGGTGGCG...AGATGATGCCCTGTACAGGAGATCCCTTCTCACCCTCCAGCTCTGCAAACCGTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CAA 90 bp | CTCAGACACAGCCCCCTGAGAGTGCCCCGAAGTCCAAGCTCACATCCCTTGGGCGCGGCTTTGGCACCGTaGGGTCTTTGGAGCGAAGAT | + |
|
Preference number: 5 (lower is better) Translates to: LRHSPLRVPRSPSSHPLGAALAP*GLWSED Trigger: ATCTTCGCTCCAAAGACCCAACGGTGCCAAAGCCGC...GCCCAAGGGATGTGAGCTTGGACTTCGGGGCACTCTCAGGGGGCTGTGTCTGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CAA 90 bp | AGGAACCTTCTTAGTGCTCACCGACCTTATACCCAGCTAGGGGGACCAGCTCCATGCTTGCGTTTCTCGTaGAGGCCGCCGTGGTCGGTG | + |
|
Preference number: 5 (lower is better) Translates to: RNLLSAHRPYTQLGGPAPCLRFS*RPPWSV Trigger: CACCGACCACGGCGGCCTCAACGAGAAACGCAAGCA...TGGAGCTGGTCCCCCTAGCTGGGTATAAGGTCGGTGAGCACTAAGAAGGTTCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| CDS-3UTR CAA 90 bp | AAGGAATTATCAATATACAGTCTGTCCACCCTACAGGAGGAGTCCAGCTCGGATCCGGAGGAGCCGTTTTaGGCGGCGGCGGCAGCAGCG | + |
|
Preference number: 5 (lower is better) Translates to: KELSIYSLSTLQEESSSDPEEPF*AAAAAA Trigger: CGCTGCTGCCGCCGCCGCCAAAAACGGCTCCTCCGG...ATCCGAGCTGGACTCCTCCTGTAGGGTGGACAGACTGTATATTGATAATTCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS-3UTR CAA 90 bp | TCTCTCAGGGCCAAGCGGCTGCGAAGATTAGGGTTCAGGCCAGAGCAGAGTGTGTTCACTAAGGCGGCTTaGGCACCGTTGGGTCTTTGG | + |
|
Preference number: 5 (lower is better) Translates to: SLRAKRLRRLGFRPEQSVFTKAA*APLGLW Trigger: CCAAAGACCCAACGGTGCCAAAGCCGCCTTAGTGAA...CACACTCTGCTCTGGCCTGAACCCTAATCTTCGCAGCCGCTTGGCCCTGAGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS TCA 90 bp | CTGGAAGCCACTGGCCTGGCTGCAGGAACTGAAGTCTGCATATGCTaGAGCCAAGCTGGAGGTATCCATCCCGGCCATACAGGACTCGTA | + |
|
Preference number: 5 (lower is better) Translates to: LEATGLAAGTEVCIC*SQAGGIHPGHTGLV Trigger: TACGAGTCCTGTATGGCCGGGATGGATACCTCCAGCTTGGCTTCAGCATATGCAGACTTCAGTTCCTGCAGCCAGGCCAGTGGCTTCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012664.11 ENSMUST00000174251.2 |
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| CDS CCA 90 bp | GGGCAACCGGACGTGGCCCCAAAAGTGGTCCTTATCGGGTTATACTaGAAGCCACTGGCCTGGCTGCAGGAACTGAAGTCTGCATATGCT | + |
|
Preference number: 5 (lower is better) Translates to: GQPDVAPKVVLIGLY*KPLAWLQELKSAYA Trigger: AGCATATGCAGACTTCAGTTCCTGCAGCCAGGCCAGTGGCTTCCAGTATAACCCGATAAGGACCACTTTTGGGGCCACGTCCGGTTGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000012664.11 ENSMUST00000174251.2 |
||
| CDS-3UTR CAA 90 bp | CAGCGCCAGCCACAGTCCTCCCTCGTCTCCTTTGTATTTTCAAATTATTCCCTCGTGCTCTTGGCCTCTTaGCTCTCGTCGTCCCGGGAG | + |
|
Preference number: 5 (lower is better) Translates to: QRQPQSSLVSFVFSNYSLVLLAS*LSSSRE Trigger: CTCCCGGGACGACGAGAGCAAAGAGGCCAAGAGCAC...GAGGGAATAATTTGAAAATACAAAGGAGACGAGGGAGGACTGTGGCTGGCGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS TCA 90 bp | TCCTTATCGGGTTATACTGGAAGCCACTGGCCTGGCTGCAGGAACTaGAGTCTGCATATGCTGAAGCCAAGCTGGAGGTATCCATCCCGG | + |
|
Preference number: 5 (lower is better) Translates to: SLSGYTGSHWPGCRN*SLHMLKPSWRYPSR Trigger: CCGGGATGGATACCTCCAGCTTGGCTTCAGCATATGCAGACTTCAGTTCCTGCAGCCAGGCCAGTGGCTTCCAGTATAACCCGATAAGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012664.11 ENSMUST00000174251.2 |
||
| CDS-3UTR CAA 90 bp | CAGCGCCAGCCACAGTCCTCCCTCGTCTCCTTTGTATTTTCAAATTATTCCCTCTCGGGATCAGTGCTCTaGGCCTCTTTGCTCTCGTCG | + |
|
Preference number: 5 (lower is better) Translates to: QRQPQSSLVSFVFSNYSLSGSVL*ASLLSS Trigger: CGACGAGAGCAAAGAGGCCAAGAGCACTGATCCCGA...GAGGGAATAATTTGAAAATACAAAGGAGACGAGGGAGGACTGTGGCTGGCGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS GCA 72 bp | GGTTGGGTCCCGGGCCCCCAGTGCTGTCGGGATCAGTaGTCTTGGCCTCTTTGCTCTCGTCGTCCCGGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: GWVPGPQCCRDQ*SWPLCSRRPGR Trigger: CCTCCCGGGACGACGAGAGCAAAGAGGCCAAGAGCACTGATCCCGACAGCACTGGGGGCCCGGGACCCAACC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
||
| CDS CAA 90 bp | GGTCCCGGGCCCCCAGTGCTGTCGGGATCAGTGCTCTTGGCCTCTTaGCTCTCGTCGTCCCGGGAGGAGTCAGACTTCTTCCCGGAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: GPGPPVLSGSVLLAS*LSSSREESDFFPEE Trigger: CTCCTCCGGGAAGAAGTCTGACTCCTCCCGGGACGACGAGAGCAAAGAGGCCAAGAGCACTGATCCCGACAGCACTGGGGGCCCGGGACC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
||
| CDS GCA 72 bp | TGGAACCGTAAGCGTCAGCACCCACCCCCTCACTGCTaGTGCGGCACTCGGTCTCCCGTACCTGGACTCTCG | + |
|
Preference number: 6 (lower is better) Translates to: WNRKRQHPPPHC*CGTRSPVPGLS Trigger: CGAGAGTCCAGGTACGGGAGACCGAGTGCCGCAGCAGCAGTGAGGGGGTGGGTGCTGACGCTTACGGTTCCA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
||
| CDS GCA 72 bp | CTTTGGAACCGTAAGCGTCAGCACCCACCCCCTCACTaGTGCTGCGGCACTCGGTCTCCCGTACCTGGACTC | + |
|
Preference number: 6 (lower is better) Translates to: LWNRKRQHPPPH*CCGTRSPVPGL Trigger: GAGTCCAGGTACGGGAGACCGAGTGCCGCAGCAGCAGTGAGGGGGTGGGTGCTGACGCTTACGGTTCCAAAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
||
| CDS CCA 72 bp | AGTTTGTATGGAACTGCGGCGTACGGACTGCTCTGGTaGTCCCTGAGGGTGCCCAGGCTGCAGGATCCCGGC | + |
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Preference number: 6 (lower is better) Translates to: SLYGTAAYGLLW*SLRVPRLQDPG Trigger: GCCGGGATCCTGCAGCCTGGGCACCCTCAGGGACCACCAGAGCAGTCCGTACGCCGCAGTTCCATACAAACT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012664.11 ENSMUST00000174251.2 |
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| CDS CCA 72 bp | CCCTCACTGCTGCTGCGGCACTCGGTCTCCCGTACCTaGACTCTCGCCTCGGTGAGGTCGATCTTCAGTGCT | + |
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Preference number: 6 (lower is better) Translates to: PSLLLRHSVSRT*TLASVRSIFSA Trigger: AGCACTGAAGATCGACCTCACCGAGGCGAGAGTCCAGGTACGGGAGACCGAGTGCCGCAGCAGCAGTGAGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| CDS CCA 72 bp | AAGAGTTTGTATGGAACTGCGGCGTACGGACTGCTCTaGTGGTCCCTGAGGGTGCCCAGGCTGCAGGATCCC | + |
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Preference number: 6 (lower is better) Translates to: KSLYGTAAYGLL*WSLRVPRLQDP Trigger: GGGATCCTGCAGCCTGGGCACCCTCAGGGACCACCAGAGCAGTCCGTACGCCGCAGTTCCATACAAACTCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012664.11 ENSMUST00000174251.2 |
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| CDS CCA 72 bp | TCCAAATCCCATTTCTGTGACGGGCCTGGGTCCCTTTaGAACCGTAAGCGTCAGCACCCACCCCCTCACTGC | + |
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Preference number: 6 (lower is better) Translates to: SKSHFCDGPGSL*NRKRQHPPPHC Trigger: GCAGTGAGGGGGTGGGTGCTGACGCTTACGGTTCCAAAGGGACCCAGGCCCGTCACAGAAATGGGATTTGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174251.2 |
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| CDS CCA 72 bp | GACGTGGCCCCAAAAGTGGTCCTTATCGGGTTATACTaGAAGCCACTGGCCTGGCTGCAGGAACTGAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: DVAPKVVLIGLY*KPLAWLQELKS Trigger: AGACTTCAGTTCCTGCAGCCAGGCCAGTGGCTTCCAGTATAACCCGATAAGGACCACTTTTGGGGCCACGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000012664.11 ENSMUST00000174251.2 |
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| CDS CCA 72 bp | ACATACTGCTCTTCACTAAGGCGGCTTTGGCACCGTTaGGTCTTTGGAGCGAAGATAAGACGCTGGCGAAGG | + |
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Preference number: 6 (lower is better) Translates to: TYCSSLRRLWHR*VFGAKIRRWRR Trigger: CCTTCGCCAGCGTCTTATCTTCGCTCCAAAGACCCAACGGTGCCAAAGCCGCCTTAGTGAAGAGCAGTATGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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| CDS CAA 72 bp | AACATACTGCTCTTCACTAAGGCGGCTTTGGCACCGTaGGGTCTTTGGAGCGAAGATAAGACGCTGGCGAAG | + |
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Preference number: 6 (lower is better) Translates to: NILLFTKAALAP*GLWSEDKTLAK Trigger: CTTCGCCAGCGTCTTATCTTCGCTCCAAAGACCCAACGGTGCCAAAGCCGCCTTAGTGAAGAGCAGTATGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012664.11 |
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