Pregenerated sensors for PHOX2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000007946Ensembl transcript IDs: ENSMUST00000008090.11
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTCTAGTGTCTAACCTCTGCGCCATACTGGCTAGGGATGGGAGGTaGCTCGTTAAGGGTGGGATTGGCGGTGGGACTCTTCAGGTTGCT | + |
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Preference number: 1 (lower is better) Translates to: PLVSNLCAILARDGR*LVKGGIGGGTLQVA Trigger: AGCAACCTGAAGAGTCCCACCGCCAATCCCACCCTTAACGAGTCACCTCCCATCCCTAGCCAGTATGGCGCAGAGGTTAGACACTAGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| 3UTR-3UTR CCA 90 bp | TACTGGCTAGGGATGGGAGGTGACTCGTTAAGGGTGGGATTGGCGGTGGGACTCAGACCAGAGTGGCCCTaGCTTGTTTTACCACGAAGG | + |
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Preference number: 2 (lower is better) Translates to: YWLGMGGDSLRVGLAVGLRPEWP*LVLPRR Trigger: CCTTCGTGGTAAAACAAGCCAGGGCCACTCTGGTCT...GAGTCCCACCGCCAATCCCACCCTTAACGAGTCACCTCCCATCCCTAGCCAGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| 3UTR-3UTR CCA 90 bp | TACTGGCTAGGGATGGGAGGTGACTCGTTAAGGGTGGGATTGGCGGTGGGACTCAGGACCCTTTATGATTaGGCACTGAGTGAGGGACAG | + |
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Preference number: 2 (lower is better) Translates to: YWLGMGGDSLRVGLAVGLRTLYD*ALSEGQ Trigger: CTGTCCCTCACTCAGTGCCCAATCATAAAGGGTCCT...GAGTCCCACCGCCAATCCCACCCTTAACGAGTCACCTCCCATCCCTAGCCAGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| 3UTR TCA 72 bp | TCTAACCTCTGCGCCATACTGGCTAGGGATGGGAGGTaGCTCGTTAAGGGTGGGATTGGCGGTGGGACTCTT | + |
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Preference number: 3 (lower is better) Translates to: SNLCAILARDGR*LVKGGIGGGTL Trigger: AAGAGTCCCACCGCCAATCCCACCCTTAACGAGTCACCTCCCATCCCTAGCCAGTATGGCGCAGAGGTTAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| 3UTR TCA 72 bp | GCGGTGGGACTCTTCAGGTTGCTTGATTTCAAGGAATaGGTGGCCCAGCTAGCTGAAAAGTCTAGGAGCTGT | + |
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Preference number: 3 (lower is better) Translates to: AVGLFRLLDFKE*VAQLAEKSRSC Trigger: ACAGCTCCTAGACTTTTCAGCTAGCTGGGCCACTCATTCCTTGAAATCAAGCAACCTGAAGAGTCCCACCGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| 3UTR TCA 72 bp | TGGCTCGGCTTCTTAGGACCCTTTATGATTGGGCACTaGGTGAGGGACAGGTGTAATTTGATCCCTGTTCCT | + |
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Preference number: 3 (lower is better) Translates to: WLGFLGPFMIGH*VRDRCNLIPVP Trigger: AGGAACAGGGATCAAATTACACCTGTCCCTCACTCAGTGCCCAATCATAAAGGGTCCTAAGAAGCCGAGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR CCA 90 bp | GGACGACGGGGAGTTTCCAGGCAGGCTGCCGGGATAGGGAGGGATAATGCCAGGCCGCGCCTTTGGCGCTaGCCGCGCGCTCCTGTTTGC | + |
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Preference number: 4 (lower is better) Translates to: GRRGVSRQAAGIGRDNARPRLWR*PRAPVC Trigger: GCAAACAGGAGCGCGCGGCCAGCGCCAAAGGCGCGG...CCTGGCATTATCCCTCCCTATCCCGGCAGCCTGCCTGGAAACTCCCCGTCGTCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR GCA 90 bp | GCTGCCGGGATAGGGAGGGATAATGCCAGGTCCAGAAGGGGAGGGGTGTCTCTCCCGCGCGCTCCTGTTTaGGGAACTTGGCCCGGCGGT | + |
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Preference number: 4 (lower is better) Translates to: AAGIGRDNARSRRGGVSLPRAPV*GTWPGG Trigger: ACCGCCGGGCCAAGTTCCGCAAACAGGAGCGCGCGG...GAGAGACACCCCTCCCCTTCTGGACCTGGCATTATCCCTCCCTATCCCGGCAGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR CCA 90 bp | TACTGGCTAGGGATGGGAGGTGACTCGTTAAGGGTGGGATTGGCGGTGGGACTCGCGCCTCGCCCTTTTTaGCGCCCGTCGCTCCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: YWLGMGGDSLRVGLAVGLAPRPF*RPSLPP Trigger: CGGCGGGAGCGACGGGCGCCAAAAAGGGCGAGGCGC...GAGTCCCACCGCCAATCCCACCCTTAACGAGTCACCTCCCATCCCTAGCCAGTA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR CCA 90 bp | CGGGGAGTTTCCAGGCAGGCTGCCGGGATAGGGAGGGATAATGCCAGGTCCAGACGGTGCTGTCGGGCGTaGGGCTGCACGTGGACTCCT | + |
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Preference number: 4 (lower is better) Translates to: RGVSRQAAGIGRDNARSRRCCRA*GCTWTP Trigger: AGGAGTCCACGTGCAGCCCCACGCCCGACAGCACCG...TCTGGACCTGGCATTATCCCTCCCTATCCCGGCAGCCTGCCTGGAAACTCCCCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR CCA 90 bp | TACTGGCTAGGGATGGGAGGTGACTCGTTAAGGGTGGGATTGGCGGTGGGACTCGGCTCAGACGCGGGCTaGCCAGGCTGGGTGCAGGCG | + |
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Preference number: 4 (lower is better) Translates to: YWLGMGGDSLRVGLAVGLGSDAG*PGWVQA Trigger: CGCCTGCACCCAGCCTGGCCAGCCCGCGTCTGAGCC...GAGTCCCACCGCCAATCCCACCCTTAACGAGTCACCTCCCATCCCTAGCCAGTA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR GCA 90 bp | GCTGCCGGGATAGGGAGGGATAATGCCAGGTCCAGAAGGGGAGGGGTGTCTCTCTGCTTGCGCTTCTCATaGAGGCCGGACGGCTCCGGG | + |
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Preference number: 4 (lower is better) Translates to: AAGIGRDNARSRRGGVSLCLRFS*RPDGSG Trigger: CCCGGAGCCGTCCGGCCTGCATGAGAAGCGCAAGCA...GAGAGACACCCCTCCCCTTCTGGACCTGGCATTATCCCTCCCTATCCCGGCAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR CCA 90 bp | GCTGCCGGGATAGGGAGGGATAATGCCAGGTCCAGAAGGGGAGGGGTGTCTCTCAGGCGGACGCCTCCATaGCCGCCACGCACGAATCGT | + |
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Preference number: 4 (lower is better) Translates to: AAGIGRDNARSRRGGVSLRRTPP*PPRTNR Trigger: ACGATTCGTGCGTGGCGGCCATGGAGGCGTCCGCCT...GAGAGACACCCCTCCCCTTCTGGACCTGGCATTATCCCTCCCTATCCCGGCAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR TCA 90 bp | GCTGCCGGGATAGGGAGGGATAATGCCAGGTCCAGAAGGGGAGGGGTGTCTCTCGGGCCGGGCTTCCGGTaGAAGGAGGACAGAACTCCA | + |
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Preference number: 4 (lower is better) Translates to: AAGIGRDNARSRRGGVSLGPGFR*KEDRTP Trigger: TGGAGTTCTGTCCTCCTTTCACCGGAAGCCCGGCCC...GAGAGACACCCCTCCCCTTCTGGACCTGGCATTATCCCTCCCTATCCCGGCAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR GCA 90 bp | CGGGGAGTTTCCAGGCAGGCTGCCGGGATAGGGAGGGATAATGCCAGGTCCAGATGTCGGGCGTGGGGCTaGACGTGGACTCCTTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: RGVSRQAAGIGRDNARSRCRAWG*TWTPWS Trigger: ACTCCAAGGAGTCCACGTGCAGCCCCACGCCCGACA...TCTGGACCTGGCATTATCCCTCCCTATCCCGGCAGCCTGCCTGGAAACTCCCCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR GCA 90 bp | GGACGACGGGGAGTTTCCAGGCAGGCTGCCGGGATAGGGAGGGATAATGCCAGGTTCTGGAACCAGACCTaGACGCGAGCCTCAGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: GRRGVSRQAAGIGRDNARFWNQT*TRASVR Trigger: CCTCACTGAGGCTCGCGTGCAGGTCTGGTTCCAGAA...CCTGGCATTATCCCTCCCTATCCCGGCAGCCTGCCTGGAAACTCCCCGTCGTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR CCA 90 bp | GCTGCCGGGATAGGGAGGGATAATGCCAGGTCCAGAAGGGGAGGGGTGTCTCTCTGCACGTGGACTCCTTaGAGTCGTCGTCCTCCGACG | + |
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Preference number: 4 (lower is better) Translates to: AAGIGRDNARSRRGGVSLCTWTP*SRRPPT Trigger: CGTCGGAGGACGACGACTCCAAGGAGTCCACGTGCA...GAGAGACACCCCTCCCCTTCTGGACCTGGCATTATCCCTCCCTATCCCGGCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR CCA 90 bp | TACTGGCTAGGGATGGGAGGTGACTCGTTAAGGGTGGGATTGGCGGTGGGACTCTGGAAGCCTCCAGGCTaGCTGCAGGCGCCGAAGTCA | + |
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Preference number: 4 (lower is better) Translates to: YWLGMGGDSLRVGLAVGLWKPPG*LQAPKS Trigger: TGACTTCGGCGCCTGCAGCCAGCCTGGAGGCTTCCA...GAGTCCCACCGCCAATCCCACCCTTAACGAGTCACCTCCCATCCCTAGCCAGTA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR CCA 90 bp | CTGTTGGCTCGGCTTCTTAGGACCCTTTATGATTGGGCACTGAGTGAGGGACAGCGCCAAGCGCACAGTTaGAGGAGCCGAGCGCGGGGC | + |
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Preference number: 4 (lower is better) Translates to: LLARLLRTLYDWALSEGQRQAHS*RSRARG Trigger: GCCCCGCGCTCGGCTCCTCCAACTGTGCGCTTGGCG...CTGTCCCTCACTCAGTGCCCAATCATAAAGGGTCCTAAGAAGCCGAGCCAACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR TCA 90 bp | GCTGCCGGGATAGGGAGGGATAATGCCAGGTCCAGAAGGGGAGGGGTGTCTCTCTCCAACTCCTTGAGCTaGGCACTCGTGAACGTTGTG | + |
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Preference number: 4 (lower is better) Translates to: AAGIGRDNARSRRGGVSLSNSLS*ALVNVV Trigger: CACAACGTTCACGAGTGCTCAGCTCAAGGAGTTGGA...GAGAGACACCCCTCCCCTTCTGGACCTGGCATTATCCCTCCCTATCCCGGCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR CCA 90 bp | CTGTTGGCTCGGCTTCTTAGGACCCTTTATGATTGGGCACTGAGTGAGGGACAGGCGTGGGGCTGCACGTaGACTCCTTGGAGTCGTCGT | + |
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Preference number: 4 (lower is better) Translates to: LLARLLRTLYDWALSEGQAWGCT*TPWSRR Trigger: ACGACGACTCCAAGGAGTCCACGTGCAGCCCCACGC...CTGTCCCTCACTCAGTGCCCAATCATAAAGGGTCCTAAGAAGCCGAGCCAACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS GCA 90 bp | ACCTGGCCCGGGTTCCGCCGGCTGCCAGGCCTTAAGCAGCTCCGCTaGGCCCGTGCCGGGGCCGCCACCTCCACCGCCCGCCACCCCTGC | + |
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Preference number: 5 (lower is better) Translates to: TWPGFRRLPGLKQLR*ARAGAATSTARHPC Trigger: GCAGGGGTGGCGGGCGGTGGAGGTGGCGGCCCCGGCACGGGCGCAGCGGAGCTGCTTAAGGCCTGGCAGCCGGCGGAACCCGGGCCAGGT 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CCA 90 bp | AGTAGGGTGCGGGCTGGTGGTCGCGTAGGGCGCCAAGCGCACAGTTaGAGGAGCCGAGCGCGGGGCAAGGTGGCCCAGCGGCGGGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: SRVRAGGRVGRQAHS*RSRARGKVAQRRGR Trigger: CCTTCCCCGCCGCTGGGCCACCTTGCCCCGCGCTCGGCTCCTCCAACTGTGCGCTTGGCGCCCTACGCGACCACCAGCCCGCACCCTACT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CCA 90 bp | CCTTGGAGTCGTCGTCCTCCGACGAGCAACGCGCCTCGCCCTTTTTaGCGCCCGTCGCTCCCGCCGCGCCTTTGGCGCTGGCCGCGCGCT | + |
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Preference number: 5 (lower is better) Translates to: PWSRRPPTSNAPRPF*RPSLPPRLWRWPRA Trigger: AGCGCGCGGCCAGCGCCAAAGGCGCGGCGGGAGCGACGGGCGCCAAAAAGGGCGAGGCGCGTTGCTCGTCGGAGGACGACGACTCCAAGG 73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS GCA 90 bp | GAGGACAGAACTCCAGAGAAGGGACCTGGCCCGGGTTCCGCCGGCTaGCAGGCCTTAAGCAGCTCCGCTGCGCCCGTGCCGGGGCCGCCA | + |
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Preference number: 5 (lower is better) Translates to: EDRTPEKGPGPGSAG*QALSSSAAPVPGPP Trigger: TGGCGGCCCCGGCACGGGCGCAGCGGAGCTGCTTAAGGCCTGGCAGCCGGCGGAACCCGGGCCAGGTCCCTTCTCTGGAGTTCTGTCCTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR CAA 90 bp | GGACGACGGGGAGTTTCCAGGCAGGCTGCCGGGATAGGGAGGGATAATGCCAGGCGCGCCTCGCCCTTTTaGGCGCCCGTCGCTCCCGCC | + |
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Preference number: 5 (lower is better) Translates to: GRRGVSRQAAGIGRDNARRASPF*APVAPA Trigger: GGCGGGAGCGACGGGCGCCAAAAAGGGCGAGGCGCG...CCTGGCATTATCCCTCCCTATCCCGGCAGCCTGCCTGGAAACTCCCCGTCGTCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS GCA 90 bp | GGAAGGCAGGCCGCAGGGGACTGTATTGGAAGCCTCCAGGCTGGCTaGAGGCGCCGAAGTCACCGTAGGCGGACGCCTCCATGGCCGCCA | + |
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Preference number: 5 (lower is better) Translates to: GRQAAGDCIGSLQAG*RRRSHRRRTPPWPP Trigger: TGGCGGCCATGGAGGCGTCCGCCTACGGTGACTTCGGCGCCTGCAGCCAGCCTGGAGGCTTCCAATACAGTCCCCTGCGGCCTGCCTTCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CCA 90 bp | GCAGCGACGCGGTGCTGTCGGGCGTGGGGCTGCACGTGGACTCCTTaGAGTCGTCGTCCTCCGACGAGCAACGCGCCTCGCCCTTTTTGG | + |
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Preference number: 5 (lower is better) Translates to: AATRCCRAWGCTWTP*SRRPPTSNAPRPFW Trigger: CCAAAAAGGGCGAGGCGCGTTGCTCGTCGGAGGACGACGACTCCAAGGAGTCCACGTGCAGCCCCACGCCCGACAGCACCGCGTCGCTGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CCA 90 bp | GCCGGGCTTCCGGTGAAAGGAGGACAGAACTCCAGAGAAGGGACCTaGCCCGGGTTCCGCCGGCTGCCAGGCCTTAAGCAGCTCCGCTGC | + |
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Preference number: 5 (lower is better) Translates to: AGLPVKGGQNSREGT*PGFRRLPGLKQLRC Trigger: GCAGCGGAGCTGCTTAAGGCCTGGCAGCCGGCGGAACCCGGGCCAGGTCCCTTCTCTGGAGTTCTGTCCTCCTTTCACCGGAAGCCCGGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR CAA 90 bp | CGGGGAGTTTCCAGGCAGGCTGCCGGGATAGGGAGGGATAATGCCAGGTCCAGAGCGCCAAGCGCACAGTaGGAGGAGCCGAGCGCGGGG | + |
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Preference number: 5 (lower is better) Translates to: RGVSRQAAGIGRDNARSRAPSAQ*EEPSAG Trigger: CCCCGCGCTCGGCTCCTCCAACTGTGCGCTTGGCGC...TCTGGACCTGGCATTATCCCTCCCTATCCCGGCAGCCTGCCTGGAAACTCCCCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR CAA 90 bp | CGGGGAGTTTCCAGGCAGGCTGCCGGGATAGGGAGGGATAATGCCAGGTCCAGAGCCGCGCGCTCCTGTTaGCGGAACTTGGCCCGGCGG | + |
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Preference number: 5 (lower is better) Translates to: RGVSRQAAGIGRDNARSRAARSC*RNLARR Trigger: CCGCCGGGCCAAGTTCCGCAAACAGGAGCGCGCGGC...TCTGGACCTGGCATTATCCCTCCCTATCCCGGCAGCCTGCCTGGAAACTCCCCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR CAA 90 bp | GCTGCCGGGATAGGGAGGGATAATGCCAGGTCCAGAAGGGGAGGGGTGTCTCTCCCGCAGGGGACTGTATaGGAAGCCTCCAGGCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: AAGIGRDNARSRRGGVSLPQGTV*EASRLA Trigger: AGCCAGCCTGGAGGCTTCCAATACAGTCCCCTGCGG...GAGAGACACCCCTCCCCTTCTGGACCTGGCATTATCCCTCCCTATCCCGGCAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS-3UTR CAA 90 bp | TACTGGCTAGGGATGGGAGGTGACTCGTTAAGGGTGGGATTGGCGGTGGGACTCCTGCACGTGGACTCCTaGGAGTCGTCGTCCTCCGAC | + |
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Preference number: 5 (lower is better) Translates to: YWLGMGGDSLRVGLAVGLLHVDS*ESSSSD Trigger: GTCGGAGGACGACGACTCCAAGGAGTCCACGTGCAG...GAGTCCCACCGCCAATCCCACCCTTAACGAGTCACCTCCCATCCCTAGCCAGTA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS GCA 72 bp | GGGTTCCGCCGGCTGCCAGGCCTTAAGCAGCTCCGCTaGGCCCGTGCCGGGGCCGCCACCTCCACCGCCCGC | + |
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Preference number: 6 (lower is better) Translates to: GFRRLPGLKQLR*ARAGAATSTAR Trigger: GCGGGCGGTGGAGGTGGCGGCCCCGGCACGGGCGCAGCGGAGCTGCTTAAGGCCTGGCAGCCGGCGGAACCC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CCA 72 bp | CGGGCTGGTGGTCGCGTAGGGCGCCAAGCGCACAGTTaGAGGAGCCGAGCGCGGGGCAAGGTGGCCCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: RAGGRVGRQAHS*RSRARGKVAQR Trigger: CCGCTGGGCCACCTTGCCCCGCGCTCGGCTCCTCCAACTGTGCGCTTGGCGCCCTACGCGACCACCAGCCCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CAA 72 bp | GCGGGCTGGTGGTCGCGTAGGGCGCCAAGCGCACAGTaGGAGGAGCCGAGCGCGGGGCAAGGTGGCCCAGCG | + |
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Preference number: 6 (lower is better) Translates to: AGWWSRRAPSAQ*EEPSAGQGGPA Trigger: CGCTGGGCCACCTTGCCCCGCGCTCGGCTCCTCCAACTGTGCGCTTGGCGCCCTACGCGACCACCAGCCCGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CAA 90 bp | CAACGCGCCTCGCCCTTTTTGGCGCCCGTCGCTCCCGCCGCGCCTTaGGCGCTGGCCGCGCGCTCCTGTTTGCGGAACTTGGCCCGGCGG | + |
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Preference number: 6 (lower is better) Translates to: QRASPFLAPVAPAAP*ALAARSCLRNLARR Trigger: CCGCCGGGCCAAGTTCCGCAAACAGGAGCGCGCGGCCAGCGCCAAAGGCGCGGCGGGAGCGACGGGCGCCAAAAAGGGCGAGGCGCGTTG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CCA 72 bp | TTTTGGCGCCCGTCGCTCCCGCCGCGCCTTTGGCGCTaGCCGCGCGCTCCTGTTTGCGGAACTTGGCCCGGC | + |
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Preference number: 6 (lower is better) Translates to: FWRPSLPPRLWR*PRAPVCGTWPG Trigger: GCCGGGCCAAGTTCCGCAAACAGGAGCGCGCGGCCAGCGCCAAAGGCGCGGCGGGAGCGACGGGCGCCAAAA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CCA 72 bp | CGTCGTCCTCCGACGAGCAACGCGCCTCGCCCTTTTTaGCGCCCGTCGCTCCCGCCGCGCCTTTGGCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: RRPPTSNAPRPF*RPSLPPRLWRW Trigger: CCAGCGCCAAAGGCGCGGCGGGAGCGACGGGCGCCAAAAAGGGCGAGGCGCGTTGCTCGTCGGAGGACGACG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CAA 90 bp | TCCTTGGAGTCGTCGTCCTCCGACGAGCAACGCGCCTCGCCCTTTTaGGCGCCCGTCGCTCCCGCCGCGCCTTTGGCGCTGGCCGCGCGC | + |
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Preference number: 6 (lower is better) Translates to: SLESSSSDEQRASPF*APVAPAAPLALAAR Trigger: GCGCGCGGCCAGCGCCAAAGGCGCGGCGGGAGCGACGGGCGCCAAAAAGGGCGAGGCGCGTTGCTCGTCGGAGGACGACGACTCCAAGGA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CCA 72 bp | CGCCCTTTTTGGCGCCCGTCGCTCCCGCCGCGCCTTTaGCGCTGGCCGCGCGCTCCTGTTTGCGGAACTTGG | + |
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Preference number: 6 (lower is better) Translates to: RPFWRPSLPPRL*RWPRAPVCGTW Trigger: CCAAGTTCCGCAAACAGGAGCGCGCGGCCAGCGCCAAAGGCGCGGCGGGAGCGACGGGCGCCAAAAAGGGCG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CAA 72 bp | TCGTCGTCCTCCGACGAGCAACGCGCCTCGCCCTTTTaGGCGCCCGTCGCTCCCGCCGCGCCTTTGGCGCTG | + |
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Preference number: 6 (lower is better) Translates to: SSSSDEQRASPF*APVAPAAPLAL Trigger: CAGCGCCAAAGGCGCGGCGGGAGCGACGGGCGCCAAAAAGGGCGAGGCGCGTTGCTCGTCGGAGGACGACGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CCA 72 bp | CGGTGCTGTCGGGCGTGGGGCTGCACGTGGACTCCTTaGAGTCGTCGTCCTCCGACGAGCAACGCGCCTCGC | + |
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Preference number: 6 (lower is better) Translates to: RCCRAWGCTWTP*SRRPPTSNAPR Trigger: GCGAGGCGCGTTGCTCGTCGGAGGACGACGACTCCAAGGAGTCCACGTGCAGCCCCACGCCCGACAGCACCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CAA 72 bp | TCGCCCTTTTTGGCGCCCGTCGCTCCCGCCGCGCCTTaGGCGCTGGCCGCGCGCTCCTGTTTGCGGAACTTG | + |
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Preference number: 6 (lower is better) Translates to: SPFLAPVAPAAP*ALAARSCLRNL Trigger: CAAGTTCCGCAAACAGGAGCGCGCGGCCAGCGCCAAAGGCGCGGCGGGAGCGACGGGCGCCAAAAAGGGCGA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CAA 72 bp | GCGGTGCTGTCGGGCGTGGGGCTGCACGTGGACTCCTaGGAGTCGTCGTCCTCCGACGAGCAACGCGCCTCG | + |
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Preference number: 6 (lower is better) Translates to: AVLSGVGLHVDS*ESSSSDEQRAS Trigger: CGAGGCGCGTTGCTCGTCGGAGGACGACGACTCCAAGGAGTCCACGTGCAGCCCCACGCCCGACAGCACCGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CAA 90 bp | GGCAGCGACGCGGTGCTGTCGGGCGTGGGGCTGCACGTGGACTCCTaGGAGTCGTCGTCCTCCGACGAGCAACGCGCCTCGCCCTTTTTG | + |
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Preference number: 6 (lower is better) Translates to: GSDAVLSGVGLHVDS*ESSSSDEQRASPFL Trigger: CAAAAAGGGCGAGGCGCGTTGCTCGTCGGAGGACGACGACTCCAAGGAGTCCACGTGCAGCCCCACGCCCGACAGCACCGCGTCGCTGCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CCA 72 bp | CCAGCGGCGGGGAAGGCAGGCCGCAGGGGACTGTATTaGAAGCCTCCAGGCTGGCTGCAGGCGCCGAAGTCA | + |
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Preference number: 6 (lower is better) Translates to: PAAGKAGRRGLY*KPPGWLQAPKS Trigger: TGACTTCGGCGCCTGCAGCCAGCCTGGAGGCTTCCAATACAGTCCCCTGCGGCCTGCCTTCCCCGCCGCTGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CCA 72 bp | GCAGCGACGCGGTGCTGTCGGGCGTGGGGCTGCACGTaGACTCCTTGGAGTCGTCGTCCTCCGACGAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: AATRCCRAWGCT*TPWSRRPPTSN Trigger: GTTGCTCGTCGGAGGACGACGACTCCAAGGAGTCCACGTGCAGCCCCACGCCCGACAGCACCGCGTCGCTGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS GCA 72 bp | GCCGCAGGGGACTGTATTGGAAGCCTCCAGGCTGGCTaGAGGCGCCGAAGTCACCGTAGGCGGACGCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: AAGDCIGSLQAG*RRRSHRRRTPP Trigger: TGGAGGCGTCCGCCTACGGTGACTTCGGCGCCTGCAGCCAGCCTGGAGGCTTCCAATACAGTCCCCTGCGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS CCA 72 bp | CCGGTGAAAGGAGGACAGAACTCCAGAGAAGGGACCTaGCCCGGGTTCCGCCGGCTGCCAGGCCTTAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: PVKGGQNSREGT*PGFRRLPGLKQ Trigger: CTGCTTAAGGCCTGGCAGCCGGCGGAACCCGGGCCAGGTCCCTTCTCTGGAGTTCTGTCCTCCTTTCACCGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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| CDS TCA 72 bp | AAGAGGTTTGTCTTCAGGGCGGGGCCGGGCTTCCGGTaGAAGGAGGACAGAACTCCAGAGAAGGGACCTGGC | + |
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Preference number: 6 (lower is better) Translates to: KRFVFRAGPGFR*KEDRTPEKGPG Trigger: GCCAGGTCCCTTCTCTGGAGTTCTGTCCTCCTTTCACCGGAAGCCCGGCCCCGCCCTGAAGACAAACCTCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008090.11 |
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