RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PHLDA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020205

Ensembl transcript IDs: ENSMUST00000164773.2

Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp TTCCCTTTTTCTCTTCCAAGATCAGGGCTTACTAAGAAATCTGTTTCTGAAAATGAAGTCCAAACTACTTaGTCAGGCGCGGGGTGGGGA +
Preference number: 2 (lower is better)
Translates to: FPFSLPRSGLTKKSVSENEVQTT*SGAGWG
Trigger: TCCCCACCCCGCGCCTGATCAAGTAGTTTGGACTTC...ATTTTCAGAAACAGATTTCTTAGTAAGCCCTGATCTTGGAAGAGAAAAAGGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
3UTR TCA 72 bp CTACGAGGGAACTGCAAGCGCGCGTTATCCGTCGGGTaGAGTCCAAACTACTTGATCAGGCGCGGGGTGGGG +
Preference number: 3 (lower is better)
Translates to: LRGNCKRALSVG*SPNYLIRRGVG
Trigger: CCCCACCCCGCGCCTGATCAAGTAGTTTGGACTTCACCCGACGGATAACGCGCGCTTGCAGTTCCCTCGTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
3UTR TCA 72 bp AGCGCGCGTTATCCGTCGGGTGAAGTCCAAACTACTTaGTCAGGCGCGGGGTGGGGAGACTCTGTTGGTTTT +
Preference number: 3 (lower is better)
Translates to: SARYPSGEVQTT*SGAGWGDSVGF
Trigger: AAAACCAACAGAGTCTCCCCACCCCGCGCCTGATCAAGTAGTTTGGACTTCACCCGACGGATAACGCGCGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR TCA 90 bp CAAGCGCGCGTTATCCGTCGGGTGAAGTCCAAACTACTTGATCAGGCGCGGGGTCCGGCGAGCGCTCACTaGAGGGCACTGGCCGGGGCC +
Preference number: 4 (lower is better)
Translates to: QARVIRRVKSKLLDQARGPASAH*RALAGA
Trigger: GGCCCCGGCCAGTGCCCTTCAGTGAGCGCTCGCCGG...ACCCCGCGCCTGATCAAGTAGTTTGGACTTCACCCGACGGATAACGCGCGCTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CCA 90 bp CAAGCGCGCGTTATCCGTCGGGTGAAGTCCAAACTACTTGATCAGGCGCGGGGTCTCACTGAAGGGCACTaGCCGGGGCCCCTCGCGGCG +
Preference number: 4 (lower is better)
Translates to: QARVIRRVKSKLLDQARGLTEGH*PGPLAA
Trigger: CGCCGCGAGGGGCCCCGGCCAGTGCCCTTCAGTGAG...ACCCCGCGCCTGATCAAGTAGTTTGGACTTCACCCGACGGATAACGCGCGCTTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR GCA 90 bp CTGCAAGCGCGCGTTATCCGTCGGGTGAAGTCCAAACTACTTGATCAGGCGCGGGTCTGCGGAGGCTGCTaGTGGACCAGGTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: LQARVIRRVKSKLLDQARVCGGC*WTRCCC
Trigger: GCAGCAGCACCTGGTCCAGCAGCAGCCTCCGCAGAC...CCGCGCCTGATCAAGTAGTTTGGACTTCACCCGACGGATAACGCGCGCTTGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CCA 90 bp CTGCAAGCGCGCGTTATCCGTCGGGTGAAGTCCAAACTACTTGATCAGGCGCGGTCGGCGTTCCAGCCCTaGTCCTGGGGGCACCGAAAG +
Preference number: 4 (lower is better)
Translates to: LQARVIRRVKSKLLDQARSAFQP*SWGHRK
Trigger: CTTTCGGTGCCCCCAGGACCAGGGCTGGAACGCCGA...CCGCGCCTGATCAAGTAGTTTGGACTTCACCCGACGGATAACGCGCGCTTGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR GCA 90 bp GCGCGCGTTATCCGTCGGGTGAAGTCCAAACTACTTGATCAGGCGCGGGGTGGGAGGTGCTGCTGCTTCTaGCTGGTAGACTTGACCGCC +
Preference number: 4 (lower is better)
Translates to: ARVIRRVKSKLLDQARGGRCCCF*LVDLTA
Trigger: GGCGGTCAAGTCTACCAGGCAGAAGCAGCAGCACCT...CCCACCCCGCGCCTGATCAAGTAGTTTGGACTTCACCCGACGGATAACGCGCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CCA 90 bp CAAGCGCGCGTTATCCGTCGGGTGAAGTCCAAACTACTTGATCAGGCGCGGGGTTGCGGAGGCTGCTGCTaGACCAGGTGCTGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: QARVIRRVKSKLLDQARGCGGCC*TRCCCF
Trigger: GAAGCAGCAGCACCTGGTCCAGCAGCAGCCTCCGCA...ACCCCGCGCCTGATCAAGTAGTTTGGACTTCACCCGACGGATAACGCGCGCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CCA 90 bp CAAGCGCGCGTTATCCGTCGGGTGAAGTCCAAACTACTTGATCAGGCGCGGGGTATCTGCGGCTGGGGCTaGGGTTGGATCTGCTGCGTC +
Preference number: 4 (lower is better)
Translates to: QARVIRRVKSKLLDQARGICGWG*GWICCV
Trigger: GACGCAGCAGATCCAACCCCAGCCCCAGCCGCAGAT...ACCCCGCGCCTGATCAAGTAGTTTGGACTTCACCCGACGGATAACGCGCGCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CCA 90 bp CGTCGGGTGAAGTCCAAACTACTTGATCAGGCGCGGGGTGGGGAGACTCTGTTGTTCCAGCCCTGGTCCTaGGGGCACCGAAAGTCGATC +
Preference number: 4 (lower is better)
Translates to: RRVKSKLLDQARGGETLLFQPWS*GHRKSI
Trigger: GATCGACTTTCGGTGCCCCCAGGACCAGGGCTGGAA...CAACAGAGTCTCCCCACCCCGCGCCTGATCAAGTAGTTTGGACTTCACCCGACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR GCA 90 bp CGTCGGGTGAAGTCCAAACTACTTGATCAGGCGCGGGGTGGGGAGACTCTGTTGCTTCCTTCAGCGCCTTaGAGCCGCTGTTCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: RRVKSKLLDQARGGETLLLPSAP*SRCSPA
Trigger: TGCTGGAGAACAGCGGCTGCAAGGCGCTGAAGGAAG...CAACAGAGTCTCCCCACCCCGCGCCTGATCAAGTAGTTTGGACTTCACCCGACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR GCA 90 bp CGTCGGGTGAAGTCCAAACTACTTGATCAGGCGCGGGGTGGGGAGACTCTGTTGTTTTTCTTCCAGAGCTaGAGCAGCCCGTCGCTTCGC +
Preference number: 4 (lower is better)
Translates to: RRVKSKLLDQARGGETLLFFFQS*SSPSLR
Trigger: GCGAAGCGACGGGCTGCTGCAGCTCTGGAAGAAAAA...CAACAGAGTCTCCCCACCCCGCGCCTGATCAAGTAGTTTGGACTTCACCCGACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CCA 90 bp CGTCGGGTGAAGTCCAAACTACTTGATCAGGCGCGGGGTGGGGAGACTCTGTTGTTCCTTCAGCTTGACTaGTGGCTCAAGGCTGGCGAC +
Preference number: 4 (lower is better)
Translates to: RRVKSKLLDQARGGETLLFLQLD*WLKAGD
Trigger: GTCGCCAGCCTTGAGCCACCAGTCAAGCTGAAGGAA...CAACAGAGTCTCCCCACCCCGCGCCTGATCAAGTAGTTTGGACTTCACCCGACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CCA 90 bp CTGCAAGCGCGCGTTATCCGTCGGGTGAAGTCCAAACTACTTGATCAGGCGCGGACCGCCAGTATGGCCTaGCGATTTTTGTACTGCACC +
Preference number: 4 (lower is better)
Translates to: LQARVIRRVKSKLLDQARTASMA*RFLYCT
Trigger: GGTGCAGTACAAAAATCGCCAGGCCATACTGGCGGT...CCGCGCCTGATCAAGTAGTTTGGACTTCACCCGACGGATAACGCGCGCTTGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR GCA 90 bp CTGCAAGCGCGCGTTATCCGTCGGGTGAAGTCCAAACTACTTGATCAGGCGCGGGAAAGTCGATCTCTTTaGCCTCCGTCATCACCACAG +
Preference number: 4 (lower is better)
Translates to: LQARVIRRVKSKLLDQARESRSL*PPSSPQ
Trigger: CTGTGGTGATGACGGAGGGCAAAGAGATCGACTTTC...CCGCGCCTGATCAAGTAGTTTGGACTTCACCCGACGGATAACGCGCGCTTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR GCA 90 bp GTGATGAACATTATGCAGAAAACTACGAGGGAACTGCAAGCGCGCGTTATCCGTCCCTGCCCGGGCTGTTaGTGCTGCTGCTGCTGTTGT +
Preference number: 4 (lower is better)
Translates to: VMNIMQKTTRELQARVIRPCPGC*CCCCCC
Trigger: ACAACAGCAGCAGCAGCAGCAACAGCCCGGGCAGGG...ACGGATAACGCGCGCTTGCAGTTCCCTCGTAGTTTTCTGCATAATGTTCATCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CCA 90 bp GGTTTTGATCCAAGTGAACTGAATAGCAATGCACTCTTCCCACTTTCCGAAGTCCGCGGCGCTTTTCAATaGGCCACCCTCCCCACCCCC +
Preference number: 4 (lower is better)
Translates to: GFDPSELNSNALFPLSEVRGAFQ*ATLPTP
Trigger: GGGGGTGGGGAGGGTGGCCCATTGAAAAGCGCCGCG...GACTTCGGAAAGTGGGAAGAGTGCATTGCTATTCAGTTCACTTGGATCAAAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CCA 90 bp GTGATGAACATTATGCAGAAAACTACGAGGGAACTGCAAGCGCGCGTTATCCGTGGTTGGATCTGCGGCTaGGGCTGGGGTTGGATCTGC +
Preference number: 4 (lower is better)
Translates to: VMNIMQKTTRELQARVIRGWICG*GWGWIC
Trigger: GCAGATCCAACCCCAGCCCCAGCCGCAGATCCAACC...ACGGATAACGCGCGCTTGCAGTTCCCTCGTAGTTTTCTGCATAATGTTCATCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CCA 90 bp GGTTTTGATCCAAGTGAACTGAATAGCAATGCACTCTTCCCACTTTCCGAAGTCGGCTGGATCTGCGGCTaGGGCTGGGGTTGGATCTGC +
Preference number: 4 (lower is better)
Translates to: GFDPSELNSNALFPLSEVGWICG*GWGWIC
Trigger: GCAGATCCAACCCCAGCCCCAGCCGCAGATCCAGCC...GACTTCGGAAAGTGGGAAGAGTGCATTGCTATTCAGTTCACTTGGATCAAAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR GCA 90 bp GGTTTTGATCCAAGTGAACTGAATAGCAATGCACTCTTCCCACTTTCCGAAGTCTGGGGTTGGATCTGCTaGGTCTGCGGAGGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GFDPSELNSNALFPLSEVWGWIC*VCGGCC
Trigger: GCAGCAGCCTCCGCAGACGCAGCAGATCCAACCCCA...GACTTCGGAAAGTGGGAAGAGTGCATTGCTATTCAGTTCACTTGGATCAAAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CCA 90 bp GTGATGAACATTATGCAGAAAACTACGAGGGAACTGCAAGCGCGCGTTATCCGTCTTCAGCTTGACTGGTaGCTCAAGGCTGGCGACGGT +
Preference number: 4 (lower is better)
Translates to: VMNIMQKTTRELQARVIRLQLDW*LKAGDG
Trigger: ACCGTCGCCAGCCTTGAGCCACCAGTCAAGCTGAAG...ACGGATAACGCGCGCTTGCAGTTCCCTCGTAGTTTTCTGCATAATGTTCATCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CCA 90 bp AATCTGCTTCCTGCAACTGTGATGAACATTATGCAGAAAACTACGAGGGAACTGATCTGCGGCTGGGGCTaGGGTTGGATCTGCGGCTGG +
Preference number: 4 (lower is better)
Translates to: NLLPATVMNIMQKTTRELICGWG*GWICGW
Trigger: CCAGCCGCAGATCCAACCCCAGCCCCAGCCGCAGAT...CAGTTCCCTCGTAGTTTTCTGCATAATGTTCATCACAGTTGCAGGAAGCAGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR TCA 90 bp CTCGACGCAAAATCTGCTTCCTGCAACTGTGATGAACATTATGCAGAAAACTACGCTGCTTGGGCGGTATaGGCAGTAGCCCTTCCTCGG +
Preference number: 4 (lower is better)
Translates to: LDAKSASCNCDEHYAENYAAWAV*AVALPR
Trigger: CCGAGGAAGGGCTACTGCTCATACCGCCCAAGCAGC...GTAGTTTTCTGCATAATGTTCATCACAGTTGCAGGAAGCAGATTTTGCGTCGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR TCA 90 bp GGTTTTGATCCAAGTGAACTGAATAGCAATGCACTCTTCCCACTTTCCGAAGTCGCACCATCTGCAACGTaGTCTCGGCGTTCCAGCCCT +
Preference number: 4 (lower is better)
Translates to: GFDPSELNSNALFPLSEVAPSAT*SRRSSP
Trigger: AGGGCTGGAACGCCGAGATCACGTTGCAGATGGTGC...GACTTCGGAAAGTGGGAAGAGTGCATTGCTATTCAGTTCACTTGGATCAAAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR GCA 90 bp TTCCCTTTTTCTCTTCCAAGATCAGGGCTTACTAAGAAATCTGTTTCTGAAAATGGTTCGGCCGTCCCCTaGCCGGGCTGTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: FPFSLPRSGLTKKSVSENGSAVP*PGCCCC
Trigger: GCAGCAGCAACAGCCCGGGCAGGGGACGGCCGAACC...ATTTTCAGAAACAGATTTCTTAGTAAGCCCTGATCTTGGAAGAGAAAAAGGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR TCA 90 bp TTCCCTTTTTCTCTTCCAAGATCAGGGCTTACTAAGAAATCTGTTTCTGAAAATGGCTGGGGTTGGGGTTaGGGCTGGATCTGCGGCTGG +
Preference number: 4 (lower is better)
Translates to: FPFSLPRSGLTKKSVSENGWGWG*GWICGW
Trigger: CCAGCCGCAGATCCAGCCTCAACCCCAACCCCAGCC...ATTTTCAGAAACAGATTTCTTAGTAAGCCCTGATCTTGGAAGAGAAAAAGGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR GCA 90 bp GCAAAATCTGCTTCCTGCAACTGTGATGAACATTATGCAGAAAACTACGAGGGATGCTGGACCAGGTGCTaGTGCTTCTGCCTGGTAGAC +
Preference number: 4 (lower is better)
Translates to: AKSASCNCDEHYAENYEGCWTRC*CFCLVD
Trigger: GTCTACCAGGCAGAAGCAGCAGCACCTGGTCCAGCA...TCCCTCGTAGTTTTCTGCATAATGTTCATCACAGTTGCAGGAAGCAGATTTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR GCA 90 bp CTCGACGCAAAATCTGCTTCCTGCAACTGTGATGAACATTATGCAGAAAACTACTGGACCAGGTGCTGCTaGTTCTGCCTGGTAGACTTG +
Preference number: 4 (lower is better)
Translates to: LDAKSASCNCDEHYAENYWTRCC*FCLVDL
Trigger: CAAGTCTACCAGGCAGAAGCAGCAGCACCTGGTCCA...GTAGTTTTCTGCATAATGTTCATCACAGTTGCAGGAAGCAGATTTTGCGTCGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR TCA 90 bp GCAAAATCTGCTTCCTGCAACTGTGATGAACATTATGCAGAAAACTACGAGGGAGTAGCCCTTCCTCGGTaGGGATGCAGCACTTTTTCT +
Preference number: 4 (lower is better)
Translates to: AKSASCNCDEHYAENYEGVALPR*GCSTFS
Trigger: AGAAAAAGTGCTGCATCCTCACCGAGGAAGGGCTAC...TCCCTCGTAGTTTTCTGCATAATGTTCATCACAGTTGCAGGAAGCAGATTTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR GCA 90 bp TTCCCTTTTTCTCTTCCAAGATCAGGGCTTACTAAGAAATCTGTTTCTGAAAATAGGCAGAGTTGGAGGTaGTGCGGAGAAGCCGGTGAC +
Preference number: 4 (lower is better)
Translates to: FPFSLPRSGLTKKSVSENRQSWR*CGEAGD
Trigger: GTCACCGGCTTCTCCGCAGCACCTCCAACTCTGCCT...ATTTTCAGAAACAGATTTCTTAGTAAGCCCTGATCTTGGAAGAGAAAAAGGGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR GCA 90 bp TTCCCTTTTTCTCTTCCAAGATCAGGGCTTACTAAGAAATCTGTTTCTGAAAATTGCTGCTGGACCAGGTaGTGCTGCTTCTGCCTGGTA +
Preference number: 4 (lower is better)
Translates to: FPFSLPRSGLTKKSVSENCCWTR*CCFCLV
Trigger: TACCAGGCAGAAGCAGCAGCACCTGGTCCAGCAGCA...ATTTTCAGAAACAGATTTCTTAGTAAGCCCTGATCTTGGAAGAGAAAAAGGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR GCA 90 bp TTCCCTTTTTCTCTTCCAAGATCAGGGCTTACTAAGAAATCTGTTTCTGAAAATTTGTACTGCACCATCTaGAACGTGATCTCGGCGTTC +
Preference number: 4 (lower is better)
Translates to: FPFSLPRSGLTKKSVSENLYCTI*NVISAF
Trigger: GAACGCCGAGATCACGTTGCAGATGGTGCAGTACAA...ATTTTCAGAAACAGATTTCTTAGTAAGCCCTGATCTTGGAAGAGAAAAAGGGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CCA 90 bp TTCCCTTTTTCTCTTCCAAGATCAGGGCTTACTAAGAAATCTGTTTCTGAAAATCTACAGTCTTCATATTaGAAAAGTGCAATTCCTTCA +
Preference number: 4 (lower is better)
Translates to: FPFSLPRSGLTKKSVSENLQSSY*KSAIPS
Trigger: TGAAGGAATTGCACTTTTCCAATATGAAGACTGTAG...ATTTTCAGAAACAGATTTCTTAGTAAGCCCTGATCTTGGAAGAGAAAAAGGGAA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS TCA 90 bp CAGAGGGACAGGCGCGTCCTGACTCGCCACAAGATCCCGGAGCCGTaGGCGGGCTGCTCTCTGCCGTCCTCCGGCGAGCGCTCACTGAAG +
Preference number: 5 (lower is better)
Translates to: QRDRRVLTRHKIPEP*AGCSLPSSGERSLK
Trigger: CTTCAGTGAGCGCTCGCCGGAGGACGGCAGAGAGCAGCCCGCTCACGGCTCCGGGATCTTGTGGCGAGTCAGGACGCGCCTGTCCCTCTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 90 bp CTGGCGACGGTGGGGCCACTAGGTTGGGACGGTTCGGCCGTCCCCTaGCCGGGCTGTTGCTGCTGCTGCTGCTGTTGTAGCTGCTTGGGC +
Preference number: 5 (lower is better)
Translates to: LATVGPLGWDGSAVP*PGCCCCCCCCSCLG
Trigger: GCCCAAGCAGCTACAACAGCAGCAGCAGCAGCAACAGCCCGGGCAGGGGACGGCCGAACCGTCCCAACCTAGTGGCCCCACCGTCGCCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CCA 90 bp AGCTTGACTGGTGGCTCAAGGCTGGCGACGGTGGGGCCACTAGGTTaGGACGGTTCGGCCGTCCCCTGCCCGGGCTGTTGCTGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: SLTGGSRLATVGPLG*DGSAVPCPGCCCCC
Trigger: GCAGCAGCAGCAACAGCCCGGGCAGGGGACGGCCGAACCGTCCCAACCTAGTGGCCCCACCGTCGCCAGCCTTGAGCCACCAGTCAAGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 90 bp CCTTGCAGCCGCTGTTCTCCAGCATCCTTCCGGCATAAGGGGTGCTaGTGCTCCGCTCGGCCTTCAGGCTTCCAGACGCTCCGGCTGGGG +
Preference number: 5 (lower is better)
Translates to: PCSRCSPASFRHKGC*CSARPSGFQTLRLG
Trigger: CCCCAGCCGGAGCGTCTGGAAGCCTGAAGGCCGAGCGGAGCAGCAGCACCCCTTATGCCGGAAGGATGCTGGAGAACAGCGGCTGCAAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 90 bp GCGCCTTGCAGCCGCTGTTCTCCAGCATCCTTCCGGCATAAGGGGTaGTGCTGCTCCGCTCGGCCTTCAGGCTTCCAGACGCTCCGGCTG +
Preference number: 5 (lower is better)
Translates to: APCSRCSPASFRHKG*CCSARPSGFQTLRL
Trigger: CAGCCGGAGCGTCTGGAAGCCTGAAGGCCGAGCGGAGCAGCAGCACCCCTTATGCCGGAAGGATGCTGGAGAACAGCGGCTGCAAGGCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 90 bp TGCAGCCGCTGTTCTCCAGCATCCTTCCGGCATAAGGGGTGCTGCTaGTCCGCTCGGCCTTCAGGCTTCCAGACGCTCCGGCTGGGGGTA +
Preference number: 5 (lower is better)
Translates to: CSRCSPASFRHKGCC*SARPSGFQTLRLGV
Trigger: TACCCCCAGCCGGAGCGTCTGGAAGCCTGAAGGCCGAGCGGAGCAGCAGCACCCCTTATGCCGGAAGGATGCTGGAGAACAGCGGCTGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CCA 90 bp GGCTGGGGCTGGGGTTGGATCTGCTGCGTCTGCGGAGGCTGCTGCTaGACCAGGTGCTGCTGCTTCTGCCTGGTAGACTTGACCGCCAGT +
Preference number: 5 (lower is better)
Translates to: GWGWGWICCVCGGCC*TRCCCFCLVDLTAS
Trigger: ACTGGCGGTCAAGTCTACCAGGCAGAAGCAGCAGCACCTGGTCCAGCAGCAGCCTCCGCAGACGCAGCAGATCCAACCCCAGCCCCAGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 90 bp GCCGTCCCCTGCCCGGGCTGTTGCTGCTGCTGCTGCTGTTGTAGCTaGTTGGGCGGTATGAGCAGTAGCCCTTCCTCGGTGAGGATGCAG +
Preference number: 5 (lower is better)
Translates to: AVPCPGCCCCCCCCS*LGGMSSSPSSVRMQ
Trigger: CTGCATCCTCACCGAGGAAGGGCTACTGCTCATACCGCCCAAGCAGCTACAACAGCAGCAGCAGCAGCAACAGCCCGGGCAGGGGACGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 90 bp ATCTGCGGCTGGGGCTGGGGTTGGATCTGCTGCGTCTGCGGAGGCTaGTGCTGGACCAGGTGCTGCTGCTTCTGCCTGGTAGACTTGACC +
Preference number: 5 (lower is better)
Translates to: ICGWGWGWICCVCGG*CWTRCCCFCLVDLT
Trigger: GGTCAAGTCTACCAGGCAGAAGCAGCAGCACCTGGTCCAGCAGCAGCCTCCGCAGACGCAGCAGATCCAACCCCAGCCCCAGCCGCAGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 90 bp GGTTGGATCTGCTGCGTCTGCGGAGGCTGCTGCTGGACCAGGTGCTaGTGCTTCTGCCTGGTAGACTTGACCGCCAGTATGGCCTGGCGA +
Preference number: 5 (lower is better)
Translates to: GWICCVCGGCCWTRC*CFCLVDLTASMAWR
Trigger: TCGCCAGGCCATACTGGCGGTCAAGTCTACCAGGCAGAAGCAGCAGCACCTGGTCCAGCAGCAGCCTCCGCAGACGCAGCAGATCCAACC
63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 90 bp GCAGCCCGTCGCTTCGCTTTTCCAGCACTCCTTCCTTCAGCGCCTTaGAGCCGCTGTTCTCCAGCATCCTTCCGGCATAAGGGGTGCTGC +
Preference number: 5 (lower is better)
Translates to: AARRFAFPALLPSAP*SRCSPASFRHKGCC
Trigger: GCAGCACCCCTTATGCCGGAAGGATGCTGGAGAACAGCGGCTGCAAGGCGCTGAAGGAAGGAGTGCTGGAAAAGCGAAGCGACGGGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS TCA 90 bp CCGCCAGTATGGCCTGGCGATTTTTGTACTGCACCATCTGCAACGTaGTCTCGGCGTTCCAGCCCTGGTCCTGGGGGCACCGAAAGTCGA +
Preference number: 5 (lower is better)
Translates to: PPVWPGDFCTAPSAT*SRRSSPGPGGTESR
Trigger: TCGACTTTCGGTGCCCCCAGGACCAGGGCTGGAACGCCGAGATCACGTTGCAGATGGTGCAGTACAAAAATCGCCAGGCCATACTGGCGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 90 bp GACTTGACCGCCAGTATGGCCTGGCGATTTTTGTACTGCACCATCTaGAACGTGATCTCGGCGTTCCAGCCCTGGTCCTGGGGGCACCGA +
Preference number: 5 (lower is better)
Translates to: DLTASMAWRFLYCTI*NVISAFQPWSWGHR
Trigger: TCGGTGCCCCCAGGACCAGGGCTGGAACGCCGAGATCACGTTGCAGATGGTGCAGTACAAAAATCGCCAGGCCATACTGGCGGTCAAGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 90 bp AGTAGCCCTTCCTCGGTGAGGATGCAGCACTTTTTCTTCCAGAGCTaGAGCAGCCCGTCGCTTCGCTTTTCCAGCACTCCTTCCTTCAGC +
Preference number: 5 (lower is better)
Translates to: SSPSSVRMQHFFFQS*SSPSLRFSSTPSFS
Trigger: GCTGAAGGAAGGAGTGCTGGAAAAGCGAAGCGACGGGCTGCTGCAGCTCTGGAAGAAAAAGTGCTGCATCCTCACCGAGGAAGGGCTACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CCA 90 bp AGGTGCTGCTGCTTCTGCCTGGTAGACTTGACCGCCAGTATGGCCTaGCGATTTTTGTACTGCACCATCTGCAACGTGATCTCGGCGTTC +
Preference number: 5 (lower is better)
Translates to: RCCCFCLVDLTASMA*RFLYCTICNVISAF
Trigger: GAACGCCGAGATCACGTTGCAGATGGTGCAGTACAAAAATCGCCAGGCCATACTGGCGGTCAAGTCTACCAGGCAGAAGCAGCAGCACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CCA 90 bp GTCTACAGTCTTCATATTGGAAAAGTGCAATTCCTTCAGCTTGACTaGTGGCTCAAGGCTGGCGACGGTGGGGCCACTAGGTTGGGACGG +
Preference number: 5 (lower is better)
Translates to: VYSLHIGKVQFLQLD*WLKAGDGGATRLGR
Trigger: CCGTCCCAACCTAGTGGCCCCACCGTCGCCAGCCTTGAGCCACCAGTCAAGCTGAAGGAATTGCACTTTTCCAATATGAAGACTGTAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 90 bp TTGCCCTTGCGCTCCACGCAGTCTACAGTCTTCATATTGGAAAAGTaGAATTCCTTCAGCTTGACTGGTGGCTCAAGGCTGGCGACGGTG +
Preference number: 5 (lower is better)
Translates to: LPLRSTQSTVFILEK*NSFSLTGGSRLATV
Trigger: CACCGTCGCCAGCCTTGAGCCACCAGTCAAGCTGAAGGAATTGCACTTTTCCAATATGAAGACTGTAGACTGCGTGGAGCGCAAGGGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CCA 90 bp TACAGTCTTCATATTGGAAAAGTGCAATTCCTTCAGCTTGACTGGTaGCTCAAGGCTGGCGACGGTGGGGCCACTAGGTTGGGACGGTTC +
Preference number: 5 (lower is better)
Translates to: YSLHIGKVQFLQLDW*LKAGDGGATRLGRF
Trigger: GAACCGTCCCAACCTAGTGGCCCCACCGTCGCCAGCCTTGAGCCACCAGTCAAGCTGAAGGAATTGCACTTTTCCAATATGAAGACTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CAA 90 bp TCTGTTGGTTTTGATCCAAGTGAACTGAATAGCAATGCACTCTTCCCACTTTCCTGCAATTCCTTCAGCTaGACTGGTGGCTCAAGGCTG +
Preference number: 5 (lower is better)
Translates to: SVGFDPSELNSNALFPLSCNSFS*TGGSRL
Trigger: CAGCCTTGAGCCACCAGTCAAGCTGAAGGAATTGCA...GGAAAGTGGGAAGAGTGCATTGCTATTCAGTTCACTTGGATCAAAACCAACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CAA 90 bp AATCTGCTTCCTGCAACTGTGATGAACATTATGCAGAAAACTACGAGGGAACTGCGAAAGTCGATCTCTTaGCCCTCCGTCATCACCACA +
Preference number: 5 (lower is better)
Translates to: NLLPATVMNIMQKTTRELRKSIS*PSVITT
Trigger: TGTGGTGATGACGGAGGGCAAAGAGATCGACTTTCG...CAGTTCCCTCGTAGTTTTCTGCATAATGTTCATCACAGTTGCAGGAAGCAGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CAA 90 bp GTGATGAACATTATGCAGAAAACTACGAGGGAACTGCAAGCGCGCGTTATCCGTTCTACAGTCTTCATATaGGAAAAGTGCAATTCCTTC +
Preference number: 5 (lower is better)
Translates to: VMNIMQKTTRELQARVIRSTVFI*EKCNSF
Trigger: GAAGGAATTGCACTTTTCCAATATGAAGACTGTAGA...ACGGATAACGCGCGCTTGCAGTTCCCTCGTAGTTTTCTGCATAATGTTCATCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS-3UTR CAA 90 bp TTCCCTTTTTCTCTTCCAAGATCAGGGCTTACTAAGAAATCTGTTTCTGAAAATATGGCCTGGCGATTTTaGTACTGCACCATCTGCAAC +
Preference number: 5 (lower is better)
Translates to: FPFSLPRSGLTKKSVSENMAWRF*YCTICN
Trigger: GTTGCAGATGGTGCAGTACAAAAATCGCCAGGCCAT...ATTTTCAGAAACAGATTTCTTAGTAAGCCCTGATCTTGGAAGAGAAAAAGGGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS TCA 72 bp CGGGCTGCTCTCTGCCGTCCTCCGGCGAGCGCTCACTaGAGGGCACTGGCCGGGGCCCCTCGCGGCGCTTTT +
Preference number: 6 (lower is better)
Translates to: RAALCRPPASAH*RALAGAPRGAF
Trigger: AAAAGCGCCGCGAGGGGCCCCGGCCAGTGCCCTTCAGTGAGCGCTCGCCGGAGGACGGCAGAGAGCAGCCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS TCA 72 bp AGGCGCGTCCTGACTCGCCACAAGATCCCGGAGCCGTaGGCGGGCTGCTCTCTGCCGTCCTCCGGCGAGCGC +
Preference number: 6 (lower is better)
Translates to: RRVLTRHKIPEP*AGCSLPSSGER
Trigger: GCGCTCGCCGGAGGACGGCAGAGAGCAGCCCGCTCACGGCTCCGGGATCTTGTGGCGAGTCAGGACGCGCCT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CCA 72 bp GGTGGCTCAAGGCTGGCGACGGTGGGGCCACTAGGTTaGGACGGTTCGGCCGTCCCCTGCCCGGGCTGTTGC +
Preference number: 6 (lower is better)
Translates to: GGSRLATVGPLG*DGSAVPCPGCC
Trigger: GCAACAGCCCGGGCAGGGGACGGCCGAACCGTCCCAACCTAGTGGCCCCACCGTCGCCAGCCTTGAGCCACC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CAA 72 bp TGGTGGCTCAAGGCTGGCGACGGTGGGGCCACTAGGTaGGGACGGTTCGGCCGTCCCCTGCCCGGGCTGTTG +
Preference number: 6 (lower is better)
Translates to: WWLKAGDGGATR*GRFGRPLPGLL
Trigger: CAACAGCCCGGGCAGGGGACGGCCGAACCGTCCCAACCTAGTGGCCCCACCGTCGCCAGCCTTGAGCCACCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CAA 90 bp CAGCTTGACTGGTGGCTCAAGGCTGGCGACGGTGGGGCCACTAGGTaGGGACGGTTCGGCCGTCCCCTGCCCGGGCTGTTGCTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: QLDWWLKAGDGGATR*GRFGRPLPGLLLLL
Trigger: CAGCAGCAGCAACAGCCCGGGCAGGGGACGGCCGAACCGTCCCAACCTAGTGGCCCCACCGTCGCCAGCCTTGAGCCACCAGTCAAGCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 72 bp GTGGGGCCACTAGGTTGGGACGGTTCGGCCGTCCCCTaGCCGGGCTGTTGCTGCTGCTGCTGCTGTTGTAGC +
Preference number: 6 (lower is better)
Translates to: VGPLGWDGSAVP*PGCCCCCCCCS
Trigger: GCTACAACAGCAGCAGCAGCAGCAACAGCCCGGGCAGGGGACGGCCGAACCGTCCCAACCTAGTGGCCCCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 72 bp TGTTCTCCAGCATCCTTCCGGCATAAGGGGTGCTGCTaGTCCGCTCGGCCTTCAGGCTTCCAGACGCTCCGG +
Preference number: 6 (lower is better)
Translates to: CSPASFRHKGCC*SARPSGFQTLR
Trigger: CCGGAGCGTCTGGAAGCCTGAAGGCCGAGCGGAGCAGCAGCACCCCTTATGCCGGAAGGATGCTGGAGAACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 72 bp CGCTGTTCTCCAGCATCCTTCCGGCATAAGGGGTGCTaGTGCTCCGCTCGGCCTTCAGGCTTCCAGACGCTC +
Preference number: 6 (lower is better)
Translates to: RCSPASFRHKGC*CSARPSGFQTL
Trigger: GAGCGTCTGGAAGCCTGAAGGCCGAGCGGAGCAGCAGCACCCCTTATGCCGGAAGGATGCTGGAGAACAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CAA 90 bp GTCCCCTGCCCGGGCTGTTGCTGCTGCTGCTGCTGTTGTAGCTGCTaGGGCGGTATGAGCAGTAGCCCTTCCTCGGTGAGGATGCAGCAC +
Preference number: 6 (lower is better)
Translates to: VPCPGCCCCCCCCSC*GGMSSSPSSVRMQH
Trigger: GTGCTGCATCCTCACCGAGGAAGGGCTACTGCTCATACCGCCCAAGCAGCTACAACAGCAGCAGCAGCAGCAACAGCCCGGGCAGGGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 72 bp TGCCCGGGCTGTTGCTGCTGCTGCTGCTGTTGTAGCTaGTTGGGCGGTATGAGCAGTAGCCCTTCCTCGGTG +
Preference number: 6 (lower is better)
Translates to: CPGCCCCCCCCS*LGGMSSSPSSV
Trigger: CACCGAGGAAGGGCTACTGCTCATACCGCCCAAGCAGCTACAACAGCAGCAGCAGCAGCAACAGCCCGGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 72 bp TGCTGCGTCTGCGGAGGCTGCTGCTGGACCAGGTGCTaGTGCTTCTGCCTGGTAGACTTGACCGCCAGTATG +
Preference number: 6 (lower is better)
Translates to: CCVCGGCCWTRC*CFCLVDLTASM
Trigger: CATACTGGCGGTCAAGTCTACCAGGCAGAAGCAGCAGCACCTGGTCCAGCAGCAGCCTCCGCAGACGCAGCA
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 72 bp ATCTGCTGCGTCTGCGGAGGCTGCTGCTGGACCAGGTaGTGCTGCTTCTGCCTGGTAGACTTGACCGCCAGT +
Preference number: 6 (lower is better)
Translates to: ICCVCGGCCWTR*CCFCLVDLTAS
Trigger: ACTGGCGGTCAAGTCTACCAGGCAGAAGCAGCAGCACCTGGTCCAGCAGCAGCCTCCGCAGACGCAGCAGAT
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CCA 72 bp TGGGGTTGGATCTGCTGCGTCTGCGGAGGCTGCTGCTaGACCAGGTGCTGCTGCTTCTGCCTGGTAGACTTG +
Preference number: 6 (lower is better)
Translates to: WGWICCVCGGCC*TRCCCFCLVDL
Trigger: CAAGTCTACCAGGCAGAAGCAGCAGCACCTGGTCCAGCAGCAGCCTCCGCAGACGCAGCAGATCCAACCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CAA 72 bp CCGGGCTGTTGCTGCTGCTGCTGCTGTTGTAGCTGCTaGGGCGGTATGAGCAGTAGCCCTTCCTCGGTGAGG +
Preference number: 6 (lower is better)
Translates to: PGCCCCCCCCSC*GGMSSSPSSVR
Trigger: CCTCACCGAGGAAGGGCTACTGCTCATACCGCCCAAGCAGCTACAACAGCAGCAGCAGCAGCAACAGCCCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS TCA 72 bp TGGCCTGGCGATTTTTGTACTGCACCATCTGCAACGTaGTCTCGGCGTTCCAGCCCTGGTCCTGGGGGCACC +
Preference number: 6 (lower is better)
Translates to: WPGDFCTAPSAT*SRRSSPGPGGT
Trigger: GGTGCCCCCAGGACCAGGGCTGGAACGCCGAGATCACGTTGCAGATGGTGCAGTACAAAAATCGCCAGGCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CAA 90 bp GGAGGCTGCTGCTGGACCAGGTGCTGCTGCTTCTGCCTGGTAGACTaGACCGCCAGTATGGCCTGGCGATTTTTGTACTGCACCATCTGC +
Preference number: 6 (lower is better)
Translates to: GGCCWTRCCCFCLVD*TASMAWRFLYCTIC
Trigger: GCAGATGGTGCAGTACAAAAATCGCCAGGCCATACTGGCGGTCAAGTCTACCAGGCAGAAGCAGCAGCACCTGGTCCAGCAGCAGCCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 72 bp CGCTTCGCTTTTCCAGCACTCCTTCCTTCAGCGCCTTaGAGCCGCTGTTCTCCAGCATCCTTCCGGCATAAG +
Preference number: 6 (lower is better)
Translates to: RFAFPALLPSAP*SRCSPASFRHK
Trigger: CTTATGCCGGAAGGATGCTGGAGAACAGCGGCTGCAAGGCGCTGAAGGAAGGAGTGCTGGAAAAGCGAAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CAA 90 bp TGCTTCTGCCTGGTAGACTTGACCGCCAGTATGGCCTGGCGATTTTaGTACTGCACCATCTGCAACGTGATCTCGGCGTTCCAGCCCTGG +
Preference number: 6 (lower is better)
Translates to: CFCLVDLTASMAWRF*YCTICNVISAFQPW
Trigger: CCAGGGCTGGAACGCCGAGATCACGTTGCAGATGGTGCAGTACAAAAATCGCCAGGCCATACTGGCGGTCAAGTCTACCAGGCAGAAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS GCA 72 bp TCCTCGGTGAGGATGCAGCACTTTTTCTTCCAGAGCTaGAGCAGCCCGTCGCTTCGCTTTTCCAGCACTCCT +
Preference number: 6 (lower is better)
Translates to: SSVRMQHFFFQS*SSPSLRFSSTP
Trigger: AGGAGTGCTGGAAAAGCGAAGCGACGGGCTGCTGCAGCTCTGGAAGAAAAAGTGCTGCATCCTCACCGAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CAA 72 bp TGCTGGACCAGGTGCTGCTGCTTCTGCCTGGTAGACTaGACCGCCAGTATGGCCTGGCGATTTTTGTACTGC +
Preference number: 6 (lower is better)
Translates to: CWTRCCCFCLVD*TASMAWRFLYC
Trigger: GCAGTACAAAAATCGCCAGGCCATACTGGCGGTCAAGTCTACCAGGCAGAAGCAGCAGCACCTGGTCCAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CCA 72 bp CATATTGGAAAAGTGCAATTCCTTCAGCTTGACTGGTaGCTCAAGGCTGGCGACGGTGGGGCCACTAGGTTG +
Preference number: 6 (lower is better)
Translates to: HIGKVQFLQLDW*LKAGDGGATRL
Trigger: CAACCTAGTGGCCCCACCGTCGCCAGCCTTGAGCCACCAGTCAAGCTGAAGGAATTGCACTTTTCCAATATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CCA 72 bp CTTCATATTGGAAAAGTGCAATTCCTTCAGCTTGACTaGTGGCTCAAGGCTGGCGACGGTGGGGCCACTAGG +
Preference number: 6 (lower is better)
Translates to: LHIGKVQFLQLD*WLKAGDGGATR
Trigger: CCTAGTGGCCCCACCGTCGCCAGCCTTGAGCCACCAGTCAAGCTGAAGGAATTGCACTTTTCCAATATGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CAA 72 bp CTGGTAGACTTGACCGCCAGTATGGCCTGGCGATTTTaGTACTGCACCATCTGCAACGTGATCTCGGCGTTC +
Preference number: 6 (lower is better)
Translates to: LVDLTASMAWRF*YCTICNVISAF
Trigger: GAACGCCGAGATCACGTTGCAGATGGTGCAGTACAAAAATCGCCAGGCCATACTGGCGGTCAAGTCTACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2
CDS CCA 72 bp TGCTTCTGCCTGGTAGACTTGACCGCCAGTATGGCCTaGCGATTTTTGTACTGCACCATCTGCAACGTGATC +
Preference number: 6 (lower is better)
Translates to: CFCLVDLTASMA*RFLYCTICNVI
Trigger: GATCACGTTGCAGATGGTGCAGTACAAAAATCGCCAGGCCATACTGGCGGTCAAGTCTACCAGGCAGAAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164773.2