Pregenerated sensors for PHGR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046804Ensembl transcript IDs: ENSMUST00000061360.4, ENSMUST00000130293.8
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TTATTTGCAAGGGAAAATTCTAGTTTAGACCCGGTGCCAGGTCAGCTGGGGATTGGGGGTGGCCCACAATaGCCCTTGCCACCTGGATGC | + |
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Preference number: 4 (lower is better) Translates to: LFARENSSLDPVPGQLGIGGGPQ*PLPPGC Trigger: GCATCCAGGTGGCAAGGGGCATTGTGGGCCACCCCC...AATCCCCAGCTGACCTGGCACCGGGTCTAAACTAGAATTTTCCCTTGCAAATAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000130293.8 |
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| CDS-3UTR CCA 90 bp | GGCTATTTATTTGCAAGGGAAAATTCTAGTTTAGACCCGGTGCCAGGTCAGCTGCAGTGCCCTGGGCCATaGCCATGGGATGGGCCACCA | + |
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Preference number: 4 (lower is better) Translates to: GYLFARENSSLDPVPGQLQCPGP*PWDGPP Trigger: TGGTGGCCCATCCCATGGCCATGGCCCAGGGCACTG...CAGCTGACCTGGCACCGGGTCTAAACTAGAATTTTCCCTTGCAAATAAATAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR CCA 90 bp | TTATTTGCAAGGGAAAATTCTAGTTTAGACCCGGTGCCAGGTCAGCTGGGGATTAGGGCCACAGTGCCCTaGGCCATGGCCATGGGATGG | + |
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Preference number: 4 (lower is better) Translates to: LFARENSSLDPVPGQLGIRATVP*AMAMGW Trigger: CCATCCCATGGCCATGGCCCAGGGCACTGTGGCCCT...AATCCCCAGCTGACCTGGCACCGGGTCTAAACTAGAATTTTCCCTTGCAAATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR GCA 90 bp | GGCTATTTATTTGCAAGGGAAAATTCTAGTTTAGACCCGGTGCCAGGTCAGCTGTGTCCTCCAGGACAGTaGCCTGGGCCATGGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: GYLFARENSSLDPVPGQLCPPGQ*PGPWPW Trigger: CCATGGCCATGGCCCAGGGCACTGTCCTGGAGGACA...CAGCTGACCTGGCACCGGGTCTAAACTAGAATTTTCCCTTGCAAATAAATAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR CCA 90 bp | TTATTTGCAAGGGAAAATTCTAGTTTAGACCCGGTGCCAGGTCAGCTGGGGATTCAGTGTCCTGGGCCATaGCCAGGGTGTGGACCACCA | + |
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Preference number: 4 (lower is better) Translates to: LFARENSSLDPVPGQLGIQCPGP*PGCGPP Trigger: TGGTGGTCCACACCCTGGCCATGGCCCAGGACACTG...AATCCCCAGCTGACCTGGCACCGGGTCTAAACTAGAATTTTCCCTTGCAAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR CCA 90 bp | TTATTTGCAAGGGAAAATTCTAGTTTAGACCCGGTGCCAGGTCAGCTGGGGATTGCCATGGCCATGGGATaGGCCACCATGTCCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: LFARENSSLDPVPGQLGIAMAMG*ATMSWR Trigger: CCTCCAGGACATGGTGGCCCATCCCATGGCCATGGC...AATCCCCAGCTGACCTGGCACCGGGTCTAAACTAGAATTTTCCCTTGCAAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR CCA 90 bp | AGAGGCTATTTATTTGCAAGGGAAAATTCTAGTTTAGACCCGGTGCCAGGTCAGCAGTGCCCTGGGCCATaGCCATGGGATGGGCCACCA | + |
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Preference number: 4 (lower is better) Translates to: RGYLFARENSSLDPVPGQQCPGP*PWDGPP Trigger: TGGTGGCCCATCCCATGGCCATGGCCCAGGGCACTG...CTGACCTGGCACCGGGTCTAAACTAGAATTTTCCCTTGCAAATAAATAGCCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR CCA 90 bp | TGGCCTCCAAGAGGCTATTTATTTGCAAGGGAAAATTCTAGTTTAGACCCGGTGCCTGGGCCATGGCCATaGGATGGGCCACCATGCCCT | + |
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Preference number: 4 (lower is better) Translates to: WPPRGYLFARENSSLDPVPGPWP*DGPPCP Trigger: AGGGCATGGTGGCCCATCCCATGGCCATGGCCCAGG...CACCGGGTCTAAACTAGAATTTTCCCTTGCAAATAAATAGCCTCTTGGAGGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR CCA 90 bp | AGAGGCTATTTATTTGCAAGGGAAAATTCTAGTTTAGACCCGGTGCCAGGTCAGACCATGGCCAGGGGGTaGCCCACAATGCCCCTTGCC | + |
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Preference number: 4 (lower is better) Translates to: RGYLFARENSSLDPVPGQTMARG*PTMPLA Trigger: GGCAAGGGGCATTGTGGGCCACCCCCTGGCCATGGT...CTGACCTGGCACCGGGTCTAAACTAGAATTTTCCCTTGCAAATAAATAGCCTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000130293.8 |
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| CDS-3UTR TCA 90 bp | TGGCCTCCAAGAGGCTATTTATTTGCAAGGGAAAATTCTAGTTTAGACCCGGTGCCATGCCCTGGAGGGTaGTGTCCTCCAGGACAGTGC | + |
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Preference number: 4 (lower is better) Translates to: WPPRGYLFARENSSLDPVPCPGG*CPPGQC Trigger: GCACTGTCCTGGAGGACATCACCCTCCAGGGCATGG...CACCGGGTCTAAACTAGAATTTTCCCTTGCAAATAAATAGCCTCTTGGAGGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR CCA 90 bp | CCTCCAAGAGGCTATTTATTTGCAAGGGAAAATTCTAGTTTAGACCCGGTGCCACAGTGTCCTGGGCCATaGCCAGGGTGTGGACCACCA | + |
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Preference number: 4 (lower is better) Translates to: PPRGYLFARENSSLDPVPQCPGP*PGCGPP Trigger: TGGTGGTCCACACCCTGGCCATGGCCCAGGACACTG...TGGCACCGGGTCTAAACTAGAATTTTCCCTTGCAAATAAATAGCCTCTTGGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR TCA 90 bp | TTATTTGCAAGGGAAAATTCTAGTTTAGACCCGGTGCCAGGTCAGCTGGGGATTCCATGTCCTGGAGGGTaGTGTCCTCCAGGACAGTGT | + |
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Preference number: 4 (lower is better) Translates to: LFARENSSLDPVPGQLGIPCPGG*CPPGQC Trigger: ACACTGTCCTGGAGGACATCACCCTCCAGGACATGG...AATCCCCAGCTGACCTGGCACCGGGTCTAAACTAGAATTTTCCCTTGCAAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR TCA 90 bp | GGCTATTTATTTGCAAGGGAAAATTCTAGTTTAGACCCGGTGCCAGGTCAGCTGCCATGTCCTGGAGGGTaGTGTCCTCCAGGACAGTGT | + |
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Preference number: 4 (lower is better) Translates to: GYLFARENSSLDPVPGQLPCPGG*CPPGQC Trigger: ACACTGTCCTGGAGGACATCACCCTCCAGGACATGG...CAGCTGACCTGGCACCGGGTCTAAACTAGAATTTTCCCTTGCAAATAAATAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR TCA 90 bp | AGAGGCTATTTATTTGCAAGGGAAAATTCTAGTTTAGACCCGGTGCCAGGTCAGCCATGTCCTGGAGGGTaGTGTCCTCCAGGACAGTGC | + |
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Preference number: 4 (lower is better) Translates to: RGYLFARENSSLDPVPGQPCPGG*CPPGQC Trigger: GCACTGTCCTGGAGGACATCACCCTCCAGGACATGG...CTGACCTGGCACCGGGTCTAAACTAGAATTTTCCCTTGCAAATAAATAGCCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR CCA 90 bp | GGCTATTTATTTGCAAGGGAAAATTCTAGTTTAGACCCGGTGCCAGGTCAGCTGTGGACCACCAGGTCCTaGAGGGTGATGTCCCTCATG | + |
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Preference number: 4 (lower is better) Translates to: GYLFARENSSLDPVPGQLWTTRS*RVMSLM Trigger: CATGAGGGACATCACCCTCCAGGACCTGGTGGTCCA...CAGCTGACCTGGCACCGGGTCTAAACTAGAATTTTCCCTTGCAAATAAATAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR CCA 90 bp | CAACAAATATGGCCTCCAAGAGGCTATTTATTTGCAAGGGAAAATTCTAGTTTACCTGGGCCATGGCCATaGGATGGGCCACCATGCCCT | + |
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Preference number: 4 (lower is better) Translates to: QQIWPPRGYLFARENSSLPGPWP*DGPPCP Trigger: AGGGCATGGTGGCCCATCCCATGGCCATGGCCCAGG...TAAACTAGAATTTTCCCTTGCAAATAAATAGCCTCTTGGAGGCCATATTTGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR GCA 90 bp | AACAACAAATATGGCCTCCAAGAGGCTATTTATTTGCAAGGGAAAATTCTAGTTTGTCCTCCAGGACAGTaGCCTGGGCCATGGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: NNKYGLQEAIYLQGKILVCPPGQ*PGPWPW Trigger: CCATGGCCATGGCCCAGGGCACTGTCCTGGAGGACA...AACTAGAATTTTCCCTTGCAAATAAATAGCCTCTTGGAGGCCATATTTGTTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR CCA 90 bp | AACAACAAATATGGCCTCCAAGAGGCTATTTATTTGCAAGGGAAAATTCTAGTTACCATGGCCAGGGGGTaGCCCACAATGCCCCTTACC | + |
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Preference number: 4 (lower is better) Translates to: NNKYGLQEAIYLQGKILVTMARG*PTMPLT Trigger: GGTAAGGGGCATTGTGGGCCACCCCCTGGCCATGGT...AACTAGAATTTTCCCTTGCAAATAAATAGCCTCTTGGAGGCCATATTTGTTGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061360.4 |
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| CDS-3UTR CCA 90 bp | CAACAAATATGGCCTCCAAGAGGCTATTTATTTGCAAGGGAAAATTCTAGTTTAGCCATGGCCATGGGATaGGCCACCATGTCCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: QQIWPPRGYLFARENSSLAMAMG*ATMSWR Trigger: CCTCCAGGACATGGTGGCCCATCCCATGGCCATGGC...TAAACTAGAATTTTCCCTTGCAAATAAATAGCCTCTTGGAGGCCATATTTGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR TCA 90 bp | AACAACAAATATGGCCTCCAAGAGGCTATTTATTTGCAAGGGAAAATTCTAGTTCCATGTCCTGGAGGGTaGTGTCCTCCAGGACAGTGC | + |
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Preference number: 4 (lower is better) Translates to: NNKYGLQEAIYLQGKILVPCPGG*CPPGQC Trigger: GCACTGTCCTGGAGGACATCACCCTCCAGGACATGG...AACTAGAATTTTCCCTTGCAAATAAATAGCCTCTTGGAGGCCATATTTGTTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS-3UTR CCA 90 bp | CAACAAATATGGCCTCCAAGAGGCTATTTATTTGCAAGGGAAAATTCTAGTTTATGGACCACCAGGTCCTaGAGGGTGATGTCCCTCATG | + |
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Preference number: 4 (lower is better) Translates to: QQIWPPRGYLFARENSSLWTTRS*RVMSLM Trigger: CATGAGGGACATCACCCTCCAGGACCTGGTGGTCCA...TAAACTAGAATTTTCCCTTGCAAATAAATAGCCTCTTGGAGGCCATATTTGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS CCA 90 bp | AGGACAGTGCCCTGGGCCATGGCCATGGGATGGGCCACCATGTCCTaGAGGGTGATGTCCTCCAGGACAGTGTCCTGGGCCATGGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: RTVPWAMAMGWATMS*RVMSSRTVSWAMAR Trigger: CCTGGCCATGGCCCAGGACACTGTCCTGGAGGACATCACCCTCCAGGACATGGTGGCCCATCCCATGGCCATGGCCCAGGGCACTGTCCT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS CCA 90 bp | AGGACAGTGTCCTGGGCCATGGCCAGGGTGTGGACCACCAGGTCCTaGAGGGTGATGTCCCTCATGACAGTGTCCCGGACCATGGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: RTVSWAMARVWTTRS*RVMSLMTVSRTMAR Trigger: CCTGGCCATGGTCCGGGACACTGTCATGAGGGACATCACCCTCCAGGACCTGGTGGTCCACACCCTGGCCATGGCCCAGGACACTGTCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS CCA 90 bp | TGGGCCACCATGTCCTGGAGGGTGATGTCCTCCAGGACAGTGTCCTaGGCCATGGCCAGGGTGTGGACCACCAGGTCCTGGAGGGTGATG | + |
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Preference number: 5 (lower is better) Translates to: WATMSWRVMSSRTVS*AMARVWTTRSWRVM Trigger: CATCACCCTCCAGGACCTGGTGGTCCACACCCTGGCCATGGCCCAGGACACTGTCCTGGAGGACATCACCCTCCAGGACATGGTGGCCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS CCA 72 bp | CCCTGGGCCATGGCCATGGGATGGGCCACCATGCCCTaGAGGGTGATGTCCTCCAGGACAGTGCCCTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: PWAMAMGWATMP*RVMSSRTVPWA Trigger: GGCCCAGGGCACTGTCCTGGAGGACATCACCCTCCAGGGCATGGTGGCCCATCCCATGGCCATGGCCCAGGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS CCA 72 bp | CCCTGGGCCATGGCCATGGGATGGGCCACCATGTCCTaGAGGGTGATGTCCTCCAGGACAGTGTCCTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: PWAMAMGWATMS*RVMSSRTVSWA Trigger: GGCCCAGGACACTGTCCTGGAGGACATCACCCTCCAGGACATGGTGGCCCATCCCATGGCCATGGCCCAGGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS CCA 72 bp | TCCTCCAGGACAGTGCCCTGGGCCATGGCCATGGGATaGGCCACCATGTCCTGGAGGGTGATGTCCTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: SSRTVPWAMAMG*ATMSWRVMSSR Trigger: CCTGGAGGACATCACCCTCCAGGACATGGTGGCCCATCCCATGGCCATGGCCCAGGGCACTGTCCTGGAGGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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| CDS CCA 72 bp | ATGTCCTGGAGGGTGATGTCCTCCAGGACAGTGTCCTaGGCCATGGCCAGGGTGTGGACCACCAGGTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: MSWRVMSSRTVS*AMARVWTTRSW Trigger: CCAGGACCTGGTGGTCCACACCCTGGCCATGGCCCAGGACACTGTCCTGGAGGACATCACCCTCCAGGACAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061360.4 ENSMUST00000130293.8 |
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