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Pregenerated sensors for PHF5A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061360

Ensembl transcript IDs: ENSMUST00000023117.10

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCTAGTGGCAGGGGCCAGGACACTAGCACTAGCAGGCTGCTCTGGTaGCACTCAGCTCCGTTCCCTTTAGGCGGTGGTAGTAGGCGTCTA +
Preference number: 1 (lower is better)
Translates to: ASGRGQDTSTSRLLW*HSAPFPLGGGSRRL
Trigger: TAGACGCCTACTACCACCGCCTAAAGGGAACGGAGCTGAGTGTCACCAGAGCAGCCTGCTAGTGCTAGTGTCCTGGCCCCTGCCACTAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR GCA 90 bp ACAAAAAGGGAACTAGGGACTAAGCGAGCAACGTCTCCTCCAGTCTaGCAGATGCTCCATGGGCACTTGCTAGTGGCAGGGGCCAGGACA +
Preference number: 1 (lower is better)
Translates to: TKRELGTKRATSPPV*QMLHGHLLVAGART
Trigger: TGTCCTGGCCCCTGCCACTAGCAAGTGCCCATGGAGCATCTGGCAGACTGGAGGAGACGTTGCTCGCTTAGTCCCTAGTTCCCTTTTTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR TCA 90 bp CAAATTGTCAGGTCACATTACTGTTCAGGTCACACCTGGCCACACTaGGGGTCACAGGACAACCCCATCATAGCTGCTGCAAGACCACAC +
Preference number: 1 (lower is better)
Translates to: QIVRSHYCSGHTWPH*GSQDNPIIAAARPH
Trigger: GTGTGGTCTTGCAGCAGCTATGATGGGGTTGTCCTGTGACCCTCAGTGTGGCCAGGTGTGACCTGAACAGTAATGTGACCTGACAATTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR TCA 90 bp AAACACCCTAAAACTAAAATGGCCTCATTCACCCTCAGGGTCCTCTaGGTTCTTTCCATGAGAGGGCAAAGCGAGCAACGTCTCCTCCAG +
Preference number: 1 (lower is better)
Translates to: KHPKTKMASFTLRVL*VLSMRGQSEQRLLQ
Trigger: CTGGAGGAGACGTTGCTCGCTTTGCCCTCTCATGGAAAGAACTCAGAGGACCCTGAGGGTGAATGAGGCCATTTTAGTTTTAGGGTGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR CCA 90 bp AAAACCCTTAAAAGTTTATTTCTTGCCATGACTTTGTTACTAGGTTaGAGTACAAACAAGGCCAACGCCCTCCCTGACAACTCTCCCATC +
Preference number: 1 (lower is better)
Translates to: KTLKSLFLAMTLLLG*STNKANALPDNSPI
Trigger: GATGGGAGAGTTGTCAGGGAGGGCGTTGGCCTTGTTTGTACTCCAACCTAGTAACAAAGTCATGGCAAGAAATAAACTTTTAAGGGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR TCA 90 bp TCTTTGAAATCGGTATTAGAAAACTCAGGTCTGGTCATTTACATATaGAATGTCAAGACTCTAAAGGCTAAGGCAGGAGGATCACCAATA +
Preference number: 1 (lower is better)
Translates to: SLKSVLENSGLVIYI*NVKTLKAKAGGSPI
Trigger: TATTGGTGATCCTCCTGCCTTAGCCTTTAGAGTCTTGACATTTCATATGTAAATGACCAGACCTGAGTTTTCTAATACCGATTTCAAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR CAA 90 bp AAGCGAGCAACGTCTCCTCCAGTCTGCCAGATGCTCCATGGGCACTaGCTAGTGGCAGGGGCCAGGACACTAGCACTAGCAGGCTGCTCT +
Preference number: 2 (lower is better)
Translates to: KRATSPPVCQMLHGH*LVAGARTLALAGCS
Trigger: AGAGCAGCCTGCTAGTGCTAGTGTCCTGGCCCCTGCCACTAGCAAGTGCCCATGGAGCATCTGGCAGACTGGAGGAGACGTTGCTCGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR-3UTR TCA 90 bp AGGAAAATAACACGAGCCCAGCACCACCTGCAAATTGTCAGGTCACATTACTGTCACACCTGGCCACACTaGGGGTCACAGGACAACCCC +
Preference number: 2 (lower is better)
Translates to: RKITRAQHHLQIVRSHYCHTWPH*GSQDNP
Trigger: GGGGTTGTCCTGTGACCCTCAGTGTGGCCAGGTGTG...ACAGTAATGTGACCTGACAATTTGCAGGTGGTGCTGGGCTCGTGTTATTTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR-3UTR CCA 90 bp GCCCTAGGTTTGATTCCCAGCACTCACATGGTAGTTCATATCCACCCAGAACTCCTGCCAGATGCTCCATaGGCACTTGCTAGTGGCAGG +
Preference number: 2 (lower is better)
Translates to: ALGLIPSTHMVVHIHPELLPDAP*ALASGR
Trigger: CCTGCCACTAGCAAGTGCCCATGGAGCATCTGGCAG...GAGTTCTGGGTGGATATGAACTACCATGTGAGTGCTGGGAATCAAACCTAGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR-3UTR GCA 90 bp AAAGGCCCTAGGTTTGATTCCCAGCACTCACATGGTAGTTCATATCCACCCAGAACGTCTCCTCCAGTCTaGCAGATGCTCCATGGGCAC +
Preference number: 2 (lower is better)
Translates to: KGPRFDSQHSHGSSYPPRTSPPV*QMLHGH
Trigger: GTGCCCATGGAGCATCTGGCAGACTGGAGGAGACGT...TCTGGGTGGATATGAACTACCATGTGAGTGCTGGGAATCAAACCTAGGGCCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR-3UTR GCA 90 bp AGGTTTGATTCCCAGCACTCACATGGTAGTTCATATCCACCCAGAACTCCAGGGCCCCATCATAGCTGCTaGAAGACCACACTTCTGCCG +
Preference number: 2 (lower is better)
Translates to: RFDSQHSHGSSYPPRTPGPHHSC*KTTLLP
Trigger: CGGCAGAAGTGTGGTCTTGCAGCAGCTATGATGGGG...CCCTGGAGTTCTGGGTGGATATGAACTACCATGTGAGTGCTGGGAATCAAACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR-3UTR GCA 90 bp TTCCAACTTACAAGGAAAATAACACGAGCCCAGCACCACCTGCAAATTGTCAGGCAACCCCATCATAGCTaGTGCAAGACCACACTTCTG +
Preference number: 2 (lower is better)
Translates to: FQLTRKITRAQHHLQIVRQPHHS*CKTTLL
Trigger: CAGAAGTGTGGTCTTGCAGCAGCTATGATGGGGTTG...CCTGACAATTTGCAGGTGGTGCTGGGCTCGTGTTATTTTCCTTGTAAGTTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR-3UTR CCA 90 bp GCCCTAGGTTTGATTCCCAGCACTCACATGGTAGTTCATATCCACCCAGAACTCACCCTAAAACTAAAATaGCCTCATTCACCCTCAGGG +
Preference number: 2 (lower is better)
Translates to: ALGLIPSTHMVVHIHPELTLKLK*PHSPSG
Trigger: CCCTGAGGGTGAATGAGGCCATTTTAGTTTTAGGGT...GAGTTCTGGGTGGATATGAACTACCATGTGAGTGCTGGGAATCAAACCTAGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR-3UTR TCA 90 bp CATGGTAGTTCATATCCACCCAGAACTCCAGGGGTGTCTGCTGCCCTTAACTCTTTGAGGCTTTTGAGTTaGAAGGATCAATGTGGAGAA +
Preference number: 2 (lower is better)
Translates to: HGSSYPPRTPGVSAALNSLRLLS*KDQCGE
Trigger: TTCTCCACATTGATCCTTTCAACTCAAAAGCCTCAA...AGAGTTAAGGGCAGCAGACACCCCTGGAGTTCTGGGTGGATATGAACTACCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR-3UTR TCA 90 bp AAAGGCCCTAGGTTTGATTCCCAGCACTCACATGGTAGTTCATATCCACCCAGATCACCAAAACCTAGATaGCTAAAAGTAGACGTTCAA +
Preference number: 2 (lower is better)
Translates to: KGPRFDSQHSHGSSYPPRSPKPR*LKVDVQ
Trigger: TTGAACGTCTACTTTTAGTCATCTAGGTTTTGGTGA...TCTGGGTGGATATGAACTACCATGTGAGTGCTGGGAATCAAACCTAGGGCCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR-3UTR CCA 90 bp AGGAAAATAACACGAGCCCAGCACCACCTGCAAATTGTCAGGTCACATTACTGTTTGAAAGGATCAATGTaGAGAACAGAGCCTTGCTTT +
Preference number: 2 (lower is better)
Translates to: RKITRAQHHLQIVRSHYCLKGSM*RTEPCF
Trigger: AAAGCAAGGCTCTGTTCTCCACATTGATCCTTTCAA...ACAGTAATGTGACCTGACAATTTGCAGGTGGTGCTGGGCTCGTGTTATTTTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR CCA 72 bp GCGAGCAACGTCTCCTCCAGTCTGCCAGATGCTCCATaGGCACTTGCTAGTGGCAGGGGCCAGGACACTAGC +
Preference number: 3 (lower is better)
Translates to: ASNVSSSLPDAP*ALASGRGQDTS
Trigger: GCTAGTGTCCTGGCCCCTGCCACTAGCAAGTGCCCATGGAGCATCTGGCAGACTGGAGGAGACGTTGCTCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR TCA 72 bp CCTCATTCACCCTCAGGGTCCTCTGAGTTCTTTCCATaGGAGGGCAAAGCGAGCAACGTCTCCTCCAGTCTG +
Preference number: 3 (lower is better)
Translates to: PHSPSGSSEFFP*EGKASNVSSSL
Trigger: CAGACTGGAGGAGACGTTGCTCGCTTTGCCCTCTCATGGAAAGAACTCAGAGGACCCTGAGGGTGAATGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR GCA 72 bp GCCACACTGAGGGTCACAGGACAACCCCATCATAGCTaGTGCAAGACCACACTTCTGCCGGGACAGTTTCAT +
Preference number: 3 (lower is better)
Translates to: ATLRVTGQPHHS*CKTTLLPGQFH
Trigger: ATGAAACTGTCCCGGCAGAAGTGTGGTCTTGCAGCAGCTATGATGGGGTTGTCCTGTGACCCTCAGTGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR TCA 72 bp AGGTCACATTACTGTTCAGGTCACACCTGGCCACACTaGGGGTCACAGGACAACCCCATCATAGCTGCTGCA +
Preference number: 3 (lower is better)
Translates to: RSHYCSGHTWPH*GSQDNPIIAAA
Trigger: TGCAGCAGCTATGATGGGGTTGTCCTGTGACCCTCAGTGTGGCCAGGTGTGACCTGAACAGTAATGTGACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR GCA 72 bp ACACTGAGGGTCACAGGACAACCCCATCATAGCTGCTaGAAGACCACACTTCTGCCGGGACAGTTTCATCAC +
Preference number: 3 (lower is better)
Translates to: TLRVTGQPHHSC*KTTLLPGQFHH
Trigger: GTGATGAAACTGTCCCGGCAGAAGTGTGGTCTTGCAGCAGCTATGATGGGGTTGTCCTGTGACCCTCAGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR-3UTR CAA 90 bp CATGGTAGTTCATATCCACCCAGAACTCCAGGGGTGTCTGCTGCCCTTAACTCTAGCACCACCTGCAAATaGTCAGGTCACATTACTGTT +
Preference number: 3 (lower is better)
Translates to: HGSSYPPRTPGVSAALNSSTTCK*SGHITV
Trigger: AACAGTAATGTGACCTGACAATTTGCAGGTGGTGCT...AGAGTTAAGGGCAGCAGACACCCCTGGAGTTCTGGGTGGATATGAACTACCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR TCA 72 bp AAAACTAAAATGGCCTCATTCACCCTCAGGGTCCTCTaGGTTCTTTCCATGAGAGGGCAAAGCGAGCAACGT +
Preference number: 3 (lower is better)
Translates to: KTKMASFTLRVL*VLSMRGQSEQR
Trigger: ACGTTGCTCGCTTTGCCCTCTCATGGAAAGAACTCAGAGGACCCTGAGGGTGAATGAGGCCATTTTAGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR TCA 72 bp GCCCTCCCTGACAACTCTCCCATCAGTAGGCAGCAATaGACTGACCCACATAGATGGATATGGCTGAATTTT +
Preference number: 3 (lower is better)
Translates to: ALPDNSPISRQQ*TDPHRWIWLNF
Trigger: AAAATTCAGCCATATCCATCTATGTGGGTCAGTTCATTGCTGCCTACTGATGGGAGAGTTGTCAGGGAGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR CCA 72 bp AAAAGTTTATTTCTTGCCATGACTTTGTTACTAGGTTaGAGTACAAACAAGGCCAACGCCCTCCCTGACAAC +
Preference number: 3 (lower is better)
Translates to: KSLFLAMTLLLG*STNKANALPDN
Trigger: GTTGTCAGGGAGGGCGTTGGCCTTGTTTGTACTCCAACCTAGTAACAAAGTCATGGCAAGAAATAAACTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR TCA 72 bp TCGGTATTAGAAAACTCAGGTCTGGTCATTTACATATaGAATGTCAAGACTCTAAAGGCTAAGGCAGGAGGA +
Preference number: 3 (lower is better)
Translates to: SVLENSGLVIYI*NVKTLKAKAGG
Trigger: TCCTCCTGCCTTAGCCTTTAGAGTCTTGACATTTCATATGTAAATGACCAGACCTGAGTTTTCTAATACCGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR CAA 72 bp ACGTCTCCTCCAGTCTGCCAGATGCTCCATGGGCACTaGCTAGTGGCAGGGGCCAGGACACTAGCACTAGCA +
Preference number: 4 (lower is better)
Translates to: TSPPVCQMLHGH*LVAGARTLALA
Trigger: TGCTAGTGCTAGTGTCCTGGCCCCTGCCACTAGCAAGTGCCCATGGAGCATCTGGCAGACTGGAGGAGACGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR CAA 72 bp GGTGAGATGACCGTTGCTCTTGAAAAGGCCCTAGGTTaGATTCCCAGCACTCACATGGTAGTTCATATCCAC +
Preference number: 4 (lower is better)
Translates to: GEMTVALEKALG*IPSTHMVVHIH
Trigger: GTGGATATGAACTACCATGTGAGTGCTGGGAATCAAACCTAGGGCCTTTTCAAGAGCAACGGTCATCTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10
3UTR CAA 72 bp ACCAAAACCCTTAAAAGTTTATTTCTTGCCATGACTTaGTTACTAGGTTGGAGTACAAACAAGGCCAACGCC +
Preference number: 4 (lower is better)
Translates to: TKTLKSLFLAMT*LLGWSTNKANA
Trigger: GGCGTTGGCCTTGTTTGTACTCCAACCTAGTAACAAAGTCATGGCAAGAAATAAACTTTTAAGGGTTTTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023117.10