RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PHF20L1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000072501

Ensembl transcript IDs: ENSMUST00000048188.10, ENSMUST00000229160.2, ENSMUST00000229576.2, ENSMUST00000230882.2, ENSMUST00000230948.2

Found 506 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTCCCCTACACAGAGCACACCCAGTATGTGGCGCACAGGTTTGTATaGGTTAATGGCATTGCTTATGGCAGGTGGAAGGATTCCTGCAAT +
Preference number: 1 (lower is better)
Translates to: LPYTEHTQYVAHRFV*VNGIAYGRWKDSCN
Trigger: ATTGCAGGAATCCTTCCACCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGTGTGCTCTGTGTAGGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR TCA 90 bp TCTCAGGGCTGGTTCCTTGTGGTTCTGTACACACTCCTTCCCCTCTaGGTTAGCTCTGTCCTGAGGTGTTATTTTTCTCTCTGCTTCAGC +
Preference number: 1 (lower is better)
Translates to: SQGWFLVVLYTLLPL*VSSVLRCYFSLCFS
Trigger: GCTGAAGCAGAGAGAAAAATAACACCTCAGGACAGAGCTAACTCAGAGGGGAAGGAGTGTGTACAGAACCACAAGGAACCAGCCCTGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR GCA 90 bp GGGGCTATCTTTCCCTGTATAGTTCACTGTCTGGTCAGACCTTCCTaGCAACCTATGCTTTTCAGCTTTCTAGCACTCTCCACAAGGCCT +
Preference number: 1 (lower is better)
Translates to: GAIFPCIVHCLVRPS*QPMLFSFLALSTRP
Trigger: AGGCCTTGTGGAGAGTGCTAGAAAGCTGAAAAGCATAGGTTGGCAGGAAGGTCTGACCAGACAGTGAACTATACAGGGAAAGATAGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR CCA 90 bp AAGTCTGGATACCATGACTCCCCTACACAGAGCACACCCAGTATGTaGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGT +
Preference number: 1 (lower is better)
Translates to: KSGYHDSPTQSTPSM*RTGLYGLMALLMAG
Trigger: ACCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGTGTGCTCTGTGTAGGGGAGTCATGGTATCCAGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR CCA 90 bp TTAATCAAGCATACTCACTTATGCATACCTGCACATGTAGCACTGTaGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGACCT +
Preference number: 1 (lower is better)
Translates to: LIKHTHLCIPAHVAL*RAHNTHQDWQTVGP
Trigger: AGGTCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGAGTATGCTTGATTAA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR TCA 90 bp TATCTGATCAGAGGGCAACTGCAATCACGTAGTACTACAGCTCCGTaGGTGACCTTCCAGTGGGACCTTGAAACAAGCAAATGCTACCAT +
Preference number: 1 (lower is better)
Translates to: YLIRGQLQSRSTTAP*VTFQWDLETSKCYH
Trigger: ATGGTAGCATTTGCTTGTTTCAAGGTCCCACTGGAAGGTCACTCACGGAGCTGTAGTACTACGTGATTGCAGTTGCCCTCTGATCAGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR TCA 90 bp TCATTCTGCACATTTTCTATGTGCGTGAGGAGATTTAGCTGCCACTaGAGATGCGAGTCTCCTGGGCCCTCCGTGCCCTTTTTATCATTA +
Preference number: 1 (lower is better)
Translates to: SFCTFSMCVRRFSCH*RCESPGPSVPFLSL
Trigger: TAATGATAAAAAGGGCACGGAGGGCCCAGGAGACTCGCATCTTCAGTGGCAGCTAAATCTCCTCACGCACATAGAAAATGTGCAGAATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR TCA 90 bp GTGGATGACAAGCATTGTGAAAGATCTTTACATGAGGCAGAGGCTTaGGTTGGAAATCCTTCAGTTGGTCATCCAGACATGACCCTCTGG +
Preference number: 1 (lower is better)
Translates to: VDDKHCERSLHEAEA*VGNPSVGHPDMTLW
Trigger: CCAGAGGGTCATGTCTGGATGACCAACTGAAGGATTTCCAACTCAAGCCTCTGCCTCATGTAAAGATCTTTCACAATGCTTGTCATCCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR GCA 90 bp TTTTTGAAAGCTAAAGGTGTCCAGCTGGAAGCTCATACCCTGGGATaGCTGTCTCCAGGCCTTCTAATTGTGGAGACAATGGCTTTCATT +
Preference number: 1 (lower is better)
Translates to: FLKAKGVQLEAHTLG*LSPGLLIVETMAFI
Trigger: AATGAAAGCCATTGTCTCCACAATTAGAAGGCCTGGAGACAGGCATCCCAGGGTATGAGCTTCCAGCTGGACACCTTTAGCTTTCAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR CCA 90 bp CAAAGTCTTGGTTGTACTCATCCCCACTCAGAAGCAGGCTCTCTGTaGAAGAGTCATCCAGGAATTCCACATCTGACAAATTTTCACCAC +
Preference number: 1 (lower is better)
Translates to: QSLGCTHPHSEAGSL*KSHPGIPHLTNFHH
Trigger: GTGGTGAAAATTTGTCAGATGTGGAATTCCTGGATGACTCTTCCACAGAGAGCCTGCTTCTGAGTGGGGATGAGTACAACCAAGACTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR CCA 90 bp GTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGTaGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCA +
Preference number: 1 (lower is better)
Translates to: VAHRFVWVNGIAYGR*KDSCNIQILFPAVS
Trigger: TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR TCA 90 bp TATGTGCATATTCGGGAGAAGGCAGAGTTAAAAGTGTCTCATCAATaGGTCAGTGCTCTATCCCCATATCTGATCAGAGGGCAACTGCAA +
Preference number: 1 (lower is better)
Translates to: YVHIREKAELKVSHQ*VSALSPYLIRGQLQ
Trigger: TTGCAGTTGCCCTCTGATCAGATATGGGGATAGAGCACTGACTCATTGATGAGACACTTTTAACTCTGCCTTCTCCCGAATATGCACATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR TCA 90 bp CTCATTAAGAGCATCGTCTTCATCCTGAGACTCCTCAAAATTAGTTaGATCAAAGTCTTGGTTGTACTCATCCCCACTCAGAAGCAGGCT +
Preference number: 1 (lower is better)
Translates to: LIKSIVFILRLLKIS*IKVLVVLIPTQKQA
Trigger: AGCCTGCTTCTGAGTGGGGATGAGTACAACCAAGACTTTGATTCAACTAATTTTGAGGAGTCTCAGGATGAAGACGATGCTCTTAATGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR GCA 90 bp ATACATTCTTCCATTATTCAACCACTCCTTATCATAACGATATTTTaGACTCCATCTCTGACCCGGAGGGTCCCGACAGATGTAGCAGAT +
Preference number: 1 (lower is better)
Translates to: IHSSIIQPLLIITIF*TPSLTRRVPTDVAD
Trigger: ATCTGCTACATCTGTCGGGACCCTCCGGGTCAGAGATGGAGTGCAAAATATCGTTATGATAAGGAGTGGTTGAATAATGGAAGAATGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR CCA 90 bp GCAATATTCAAATCCTCTTTCCAGCAGTATCAACATTTGGCACATTaGGCCCTTCTGCAAGCCACTTTACTTTTAAAGAGCACAATGCCC +
Preference number: 1 (lower is better)
Translates to: AIFKSSFQQYQHLAH*ALLQATLLLKSTMP
Trigger: GGGCATTGTGCTCTTTAAAAGTAAAGTGGCTTGCAGAAGGGCCCAATGTGCCAAATGTTGATACTGCTGGAAAGAGGATTTGAATATTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR GCA 90 bp TATGTACATATGTATGTTGACTACTTAATCAAGCATACTCACTTATaGATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACAC +
Preference number: 1 (lower is better)
Translates to: YVHMYVDYLIKHTHL*IPAHVALWRAHNTH
Trigger: GTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGAGTATGCTTGATTAAGTAGTCAACATACATATGTACATA
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR TCA 90 bp TCCGTACTCCACACATGGAACATTTCAGACTTTGTGTGGGAACACTaGGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACC +
Preference number: 1 (lower is better)
Translates to: SVLHTWNISDFVWEH*VCTIILCIILIKVT
Trigger: GGTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCACACAAAGTCTGAAATGTTCCATGTGTGGAGTACGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR TCA 90 bp CTCTATCCAACTCTAACCATGCTAATTTCATGGCCTGCACATAGATaGCACTCAGTGATAGGTGATATCGAGTTCATGTATTATGCTTCT +
Preference number: 1 (lower is better)
Translates to: LYPTLTMLISWPAHR*HSVIGDIEFMYYAS
Trigger: AGAAGCATAATACATGAACTCGATATCACCTATCACTGAGTGTCATCTATGTGCAGGCCATGAAATTAGCATGGTTAGAGTTGGATAGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR CCA 90 bp TTTTACAAGTCTCTACATTCTGTTCAACCCATTGCAAAGTGTATGTaGATGACAAGCATTGTGAAAGATCTTTACATGAGGCAGAGGCTT +
Preference number: 1 (lower is better)
Translates to: FYKSLHSVQPIAKCM*MTSIVKDLYMRQRL
Trigger: AAGCCTCTGCCTCATGTAAAGATCTTTCACAATGCTTGTCATCCACATACACTTTGCAATGGGTTGAACAGAATGTAGAGACTTGTAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR CCA 90 bp TGGATCTTCAAAATTCTCAAGTCTTCAACAGTGAAGGGAAAAAGCTaGTTCCAAAGGTTGATTTCCAATAATCTCAGACTCAGGATTATT +
Preference number: 1 (lower is better)
Translates to: WIFKILKSSTVKGKS*FQRLISNNLRLRII
Trigger: AATAATCCTGAGTCTGAGATTATTGGAAATCAACCTTTGGAACCAGCTTTTTCCCTTCACTGTTGAAGACTTGAGAATTTTGAAGATCCA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR TCA 90 bp ATACTGTGCATTATTTTAATCAAGGTGACCAGAACTGAATTCTTCTaGGTTCTGAACGCAGAGTTCTTCTGCATATATGATAAGAACCAA +
Preference number: 1 (lower is better)
Translates to: ILCIILIKVTRTEFF*VLNAEFFCIYDKNQ
Trigger: TTGGTTCTTATCATATATGCAGAAGAACTCTGCGTTCAGAACTCAGAAGAATTCAGTTCTGGTCACCTTGATTAAAATAATGCACAGTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR GCA 90 bp ACTACAAGTATCTTGCCAATTCCATTCCATTTCTTTAGTGCAGCTTaGATTATCCTCATTGATTCTTGGCATAGGTTACATTATCATTTG +
Preference number: 1 (lower is better)
Translates to: TTSILPIPFHFFSAA*IILIDSWHRLHYHL
Trigger: CAAATGATAATGTAACCTATGCCAAGAATCAATGAGGATAATGCAAGCTGCACTAAAGAAATGGAATGGAATTGGCAAGATACTTGTAGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR GCA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGCCTCCAGGAGCCCCATaGACACACTGTGCTGCCAGC +
Preference number: 2 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRPPGAP*THCAAS
Trigger: GCTGGCAGCACAGTGTGTGCATGGGGCTCCTGGAGG...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR CCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGACAACATTTGGCACATTaGGCCCTTCTGCAAGCCACT +
Preference number: 2 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGQHLAH*ALLQAT
Trigger: AGTGGCTTGCAGAAGGGCCCAATGTGCCAAATGTTG...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR CAA 90 bp CATGACTCCCCTACACAGAGCACACCCAGTATGTGGCGCACAGGTTaGTATGGGTTAATGGCATTGCTTATGGCAGGTGGAAGGATTCCT +
Preference number: 2 (lower is better)
Translates to: HDSPTQSTPSMWRTG*YGLMALLMAGGRIP
Trigger: AGGAATCCTTCCACCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGTGTGCTCTGTGTAGGGGAGTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAGAAGTCTGGATACCATaGCTCCCCTACACAGAGCAC +
Preference number: 2 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPEVWIP*LPYTEH
Trigger: GTGCTCTGTGTAGGGGAGTCATGGTATCCAGACTTC...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGAAAATCCAGCAAGAGCTaGGTAAGCAACTTAGTTGCC +
Preference number: 2 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGKSSKS*VSNLVA
Trigger: GGCAACTAAGTTGCTTACTCAGCTCTTGCTGGATTT...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAAGATTTAGCTGCCACTaGAGATGCGAGTCTCCTGGG +
Preference number: 2 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPRFSCH*RCESPG
Trigger: CCCAGGAGACTCGCATCTTCAGTGGCAGCTAAATCT...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR TCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAGCTCCAACTCCCCTGTaGAATCAAGCCAGCTTTCCA +
Preference number: 2 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPAPTPL*NQASFP
Trigger: TGGAAAGCTGGCTTGATTTCACAGGGGAGTTGGAGC...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR CCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAAACACACACCAGGACTaGCAGACAGTAGGACCTAGG +
Preference number: 2 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPNTHQD*QTVGPR
Trigger: CCTAGGTCCTACTGTCTGCCAGTCCTGGTGTGTGTT...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp AGGATGGAAAAGCATGCACAGCTCAGTATGTACAGGTATTGTGGGTACGTGAACAGTACTACAGCTCCGTaGGTGACCTTCCAGTGGGAC +
Preference number: 2 (lower is better)
Translates to: RMEKHAQLSMYRYCGYVNSTTAP*VTFQWD
Trigger: GTCCCACTGGAAGGTCACTCACGGAGCTGTAGTACT...GTTCACGTACCCACAATACCTGTACATACTGAGCTGTGCATGCTTTTCCATCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR-3UTR GCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGAATCAACAGACAGAATTaGCCTCGGGTACTGATAAGT +
Preference number: 2 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGINRQN*PRVLIS
Trigger: ACTTATCAGTACCCGAGGGCAATTCTGTCTGTTGAT...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR CCA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGGCGCACAGGTTTGTATaGGTTAATGGCATTGCTTAT +
Preference number: 2 (lower is better)
Translates to: TCSTVACTQHTPGLADSRAHRFV*VNGIAY
Trigger: ATAAGCAATGCCATTAACCCATACAAACCTGTGCGC...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAAAGATGGCTTTTATCTaGCACACGGAGCTCCCCATC +
Preference number: 2 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPKMAFI*HTELPI
Trigger: GATGGGGAGCTCCGTGTGCCAGATAAAAGCCATCTT...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR TCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGAAATTTCCTTACAGTGTaGTTTTGGCCAAATGCTGGT +
Preference number: 2 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGNFLTV*FWPNAG
Trigger: ACCAGCATTTGGCCAAAATCACACTGTAAGGAAATT...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR GCA 90 bp CCACTCCTTATCATAACGATATTTTGCACTCCATCTCTGACCCGGAGGGTCCCGTTCTTTCCTTTTACCTaGCCAGAGTGGACGGATTCA +
Preference number: 2 (lower is better)
Translates to: PLLIITIFCTPSLTRRVPFFPFT*PEWTDS
Trigger: TGAATCCGTCCACTCTGGGCAGGTAAAAGGAAAGAA...CGGGACCCTCCGGGTCAGAGATGGAGTGCAAAATATCGTTATGATAAGGAGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR CCA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGAGCAGTATCAACATTTaGCACATTGGGCCCTTCTGC +
Preference number: 2 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRSSINI*HIGPFC
Trigger: GCAGAAGGGCCCAATGTGCCAAATGTTGATACTGCT...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGAATTTGTCTTCAGAAATaGAGCCTTTCCAGTATTCCA +
Preference number: 2 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGICLQK*SLSSIP
Trigger: TGGAATACTGGAAAGGCTTCATTTCTGAAGACAAAT...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTAAACACACACCAGGACTaGCAGACAGTAGGACCTAGG +
Preference number: 2 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVNTHQD*QTVGPR
Trigger: CCTAGGTCCTACTGTCTGCCAGTCCTGGTGTGTGTT...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp TTGTACAGAAGATGGCTTTTATCTGGCACACGGAGCTCCCCATCTTCTTCAAAAGCTTCAGCTACTGCCTaGTCTTGGTCTTTCCTCTTC +
Preference number: 2 (lower is better)
Translates to: LYRRWLLSGTRSSPSSSKASATA*SWSFLF
Trigger: GAAGAGGAAAGACCAAGATCAGGCAGTAGCTGAAGC...TTTTGAAGAAGATGGGGAGCTCCGTGTGCCAGATAAAAGCCATCTTCTGTACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR GCA 90 bp TTGAGTTGGAAATCCTTCAGTTGGTCATCCAGACATGACCCTCTGGATCTTCAACTGGTCAGACCTTCCTaGCAACCTATGCTTTTCAGC +
Preference number: 2 (lower is better)
Translates to: LSWKSFSWSSRHDPLDLQLVRPS*QPMLFS
Trigger: GCTGAAAAGCATAGGTTGGCAGGAAGGTCTGACCAG...TTGAAGATCCAGAGGGTCATGTCTGGATGACCAACTGAAGGATTTCCAACTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR CCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGAATTTTGGCCAAATGCTaGTTTATAAACATGGGTATC +
Preference number: 2 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGILAKC*FINMGI
Trigger: GATACCCATGTTTATAAACCAGCATTTGGCCAAAAT...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTACAACATTTGGCACATTaGGCCCTTCTGCAAGCCACT +
Preference number: 2 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVQHLAH*ALLQAT
Trigger: AGTGGCTTGCAGAAGGGCCCAATGTGCCAAATGTTG...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTAACACACACCAGGACTaGCAGACAGTAGGACCTAGG +
Preference number: 2 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLNTHQD*QTVGPR
Trigger: CCTAGGTCCTACTGTCTGCCAGTCCTGGTGTGTGTT...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAGTTGAATCAAAGTCTTaGTTGTACTCATCCCCACTC +
Preference number: 2 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPVESKS*LYSSPL
Trigger: GAGTGGGGATGAGTACAACCAAGACTTTGATTCAAC...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR CAA 90 bp AGGGTCTGTGAGAGACTGGCAGTCCTGACTAAAGCTTTGTGGCTTTaGATAGCTGTGCTCGCTTGTTATGTAAGTTTCTTCCATTCTCAG +
Preference number: 2 (lower is better)
Translates to: RVCERLAVLTKALWL*IAVLACYVSFFHSQ
Trigger: CTGAGAATGGAAGAAACTTACATAACAAGCGAGCACAGCTATCAAAAGCCACAAAGCTTTAGTCAGGACTGCCAGTCTCTCACAGACCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR TCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAAATTTCCTTACAGTGTaGTTTTGGCCAAATGCTGGT +
Preference number: 2 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPNFLTV*FWPNAG
Trigger: ACCAGCATTTGGCCAAAATCACACTGTAAGGAAATT...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGAATTTCCTTACAGTGTaGTTTTGGCCAAATGCTGGT +
Preference number: 2 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRNFLTV*FWPNAG
Trigger: ACCAGCATTTGGCCAAAATCACACTGTAAGGAAATT...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAATAACTACCCCACAATaGCTTCTGCTAAAGCATTCA +
Preference number: 2 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPITTPQ*LLLKHS
Trigger: TGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTAT...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp AACACTTTATTCCCTGAAGCTGGATTCTTCTCTGACACTCCCCGATTTTTGTACCGTAAATGTGCTTCGTaGAGCCAGAGAACTCCCAGA +
Preference number: 2 (lower is better)
Translates to: NTLFPEAGFFSDTPRFLYRKCAS*SQRTPR
Trigger: TCTGGGAGTTCTCTGGCTCCACGAAGCACATTTACG...GTACAAAAATCGGGGAGTGTCAGAGAAGAATCCAGCTTCAGGGAATAAAGTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR CAA 90 bp TTCTCCTCCCCTCTTCCGTTCCCTCACTTCCCTCCTGCTACTGAGTaGTTCGATTTTGTTTCTAATGAACTAAGTACACTCAGAAGTCTT +
Preference number: 2 (lower is better)
Translates to: FSSPLPFPHFPPATE*FDFVSNELSTLRSL
Trigger: AAGACTTCTGAGTGTACTTAGTTCATTAGAAACAAAATCGAACAACTCAGTAGCAGGAGGGAAGTGAGGGAACGGAAGAGGGGAGGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR CAA 90 bp CATACATTCTTCCATTATTCAACCACTCCTTATCATAACGATATTTaGCACTCCATCTCTGACCCGGAGGGTCCCGACAGATGTAGCAGA +
Preference number: 2 (lower is better)
Translates to: HTFFHYSTTPYHNDI*HSISDPEGPDRCSR
Trigger: TCTGCTACATCTGTCGGGACCCTCCGGGTCAGAGATGGAGTGCAAAATATCGTTATGATAAGGAGTGGTTGAATAATGGAAGAATGTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR TCA 90 bp CTCTCCACAAGGCCTCCTAAGGTTGTTCTTTACCTATGGGATGTTACAAGTCAAAAATCCAGCAAGAGCTaGGTAAGCAACTTAGTTGCC +
Preference number: 2 (lower is better)
Translates to: LSTRPPKVVLYLWDVTSQKSSKS*VSNLVA
Trigger: GGCAACTAAGTTGCTTACTCAGCTCTTGCTGGATTT...TTGACTTGTAACATCCCATAGGTAAAGAACAACCTTAGGAGGCCTTGTGGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR GCA 90 bp ATTAATGGAGGTATCAAAACAATGCACTGCTTTCAAATCAGGCCTGAATCAACAGCTCATACCCTGGGATaGCTGTCTCCAGGCCTTCTA +
Preference number: 2 (lower is better)
Translates to: INGGIKTMHCFQIRPESTAHTLG*LSPGLL
Trigger: TAGAAGGCCTGGAGACAGGCATCCCAGGGTATGAGC...TGTTGATTCAGGCCTGATTTGAAAGCAGTGCATTGTTTTGATACCTCCATTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR-3UTR CCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACCAACATTTGGCACATTaGGCCCTTCTGCAAGCCACT +
Preference number: 2 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDQHLAH*ALLQAT
Trigger: AGTGGCTTGCAGAAGGGCCCAATGTGCCAAATGTTG...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATCAACATTTGGCACATTaGGCCCTTCTGCAAGCCACT +
Preference number: 2 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHQHLAH*ALLQAT
Trigger: AGTGGCTTGCAGAAGGGCCCAATGTGCCAAATGTTG...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCAGAAGCAGGCTCTCTGTaGAAGAGTCATCCAGGAATT +
Preference number: 2 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSEAGSL*KSHPGI
Trigger: AATTCCTGGATGACTCTTCCACAGAGAGCCTGCTTC...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR TCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACGGATCAAGTGTAGGCTaGAGTCTGGATACCATGACT +
Preference number: 2 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDGSSVG*SLDTMT
Trigger: AGTCATGGTATCCAGACTTCAGCCTACACTTGATCC...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTAAGAACTGAATTCTTCTaGGTTCTGAACGCAGAGTTC +
Preference number: 2 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVRTEFF*VLNAEF
Trigger: GAACTCTGCGTTCAGAACTCAGAAGAATTCAGTTCT...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp TTGTACAGAAGATGGCTTTTATCTGGCACACGGAGCTCCCCATCTTCTTCAAAAGAGTTAGCTCTGTCCTaGGGTGTTATTTTTCTCTCT +
Preference number: 2 (lower is better)
Translates to: LYRRWLLSGTRSSPSSSKELALS*GVIFLS
Trigger: AGAGAGAAAAATAACACCTCAGGACAGAGCTAACTC...TTTTGAAGAAGATGGGGAGCTCCGTGTGCCAGATAAAAGCCATCTTCTGTACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR GCA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGTTCTTTAGTGCAGCTTaGATTATCCTCATTGATTCT +
Preference number: 2 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRFFSAA*IILIDS
Trigger: AGAATCAATGAGGATAATGCAAGCTGCACTAAAGAA...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR GCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCATTCTTTAGTGCAGCTTaGATTATCCTCATTGATTCT +
Preference number: 2 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPFFSAA*IILIDS
Trigger: AGAATCAATGAGGATAATGCAAGCTGCACTAAAGAA...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR GCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAAACGCAGAGTTCTTCTaGATATATGATAAGAACCAA +
Preference number: 2 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPNAEFF*IYDKNQ
Trigger: TTGGTTCTTATCATATATGCAGAAGAACTCTGCGTT...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR GCA 90 bp TTCCAGAACGTCCACTTCTTTTTCTATGAGGTCCATCCTGCTGGTGACTTCATTATCATAACGATATTTTaGACTCCATCTCTGACCCGG +
Preference number: 2 (lower is better)
Translates to: FQNVHFFFYEVHPAGDFIIITIF*TPSLTR
Trigger: CCGGGTCAGAGATGGAGTGCAAAATATCGTTATGAT...AATGAAGTCACCAGCAGGATGGACCTCATAGAAAAAGAAGTGGACGTTCTGGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR CCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAATTTTGGCCAAATGCTaGTTTATAAACATGGGTATC +
Preference number: 2 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPILAKC*FINMGI
Trigger: GATACCCATGTTTATAAACCAGCATTTGGCCAAAAT...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR CAA 90 bp TGCAATATTCAAATCCTCTTTCCAGCAGTATCAACATTTGGCACATaGGGCCCTTCTGCAAGCCACTTTACTTTTAAAGAGCACAATGCC +
Preference number: 2 (lower is better)
Translates to: CNIQILFPAVSTFGT*GPSASHFTFKEHNA
Trigger: GGCATTGTGCTCTTTAAAAGTAAAGTGGCTTGCAGAAGGGCCCAATGTGCCAAATGTTGATACTGCTGGAAAGAGGATTTGAATATTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR CAA 90 bp AGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCAACATTaGGCACATTGGGCCCTTCTGCAAGCCACTTTACTTTTAAAGAGC +
Preference number: 2 (lower is better)
Translates to: RIPAIFKSSFQQYQH*AHWALLQATLLLKS
Trigger: GCTCTTTAAAAGTAAAGTGGCTTGCAGAAGGGCCCAATGTGCCAAATGTTGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp TTGAGTTGGAAATCCTTCAGTTGGTCATCCAGACATGACCCTCTGGATCTTCAATCTAGGGTTCAGTCATaGTGGGAAAATTTAAAGCCA +
Preference number: 2 (lower is better)
Translates to: LSWKSFSWSSRHDPLDLQSRVQS*WENLKP
Trigger: TGGCTTTAAATTTTCCCATCATGACTGAACCCTAGA...TTGAAGATCCAGAGGGTCATGTCTGGATGACCAACTGAAGGATTTCCAACTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR TCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTAGAACTGAATTCTTCTaGGTTCTGAACGCAGAGTTC +
Preference number: 2 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLRTEFF*VLNAEF
Trigger: GAACTCTGCGTTCAGAACTCAGAAGAATTCAGTTCT...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp AGTACACTCAGAAGTCTTTCCTTGGGCTCTAGTTTAGAGAGAACAAAGACTAGGAGCCTTTTCATTCCTTaGCAAATAAGCAGAGTGGGA +
Preference number: 2 (lower is better)
Translates to: STLRSLSLGSSLERTKTRSLFIP*QISRVG
Trigger: TCCCACTCTGCTTATTTGTCAAGGAATGAAAAGGCT...CCTAGTCTTTGTTCTCTCTAAACTAGAGCCCAAGGAAAGACTTCTGAGTGTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR TCA 90 bp CTCTCCACAAGGCCTCCTAAGGTTGTTCTTTACCTATGGGATGTTACAAGTCAATTAGCCTATGGAACATaGTCTTATCCTCTATCCAAC +
Preference number: 2 (lower is better)
Translates to: LSTRPPKVVLYLWDVTSQLAYGT*SYPLSN
Trigger: GTTGGATAGAGGATAAGATCATGTTCCATAGGCTAA...TTGACTTGTAACATCCCATAGGTAAAGAACAACCTTAGGAGGCCTTGTGGAGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR CCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACAAGTTTCTTTGCAGCTaGATCCAACTGCTAGAAGGC +
Preference number: 2 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDKFLCS*IQLLEG
Trigger: GCCTTCTAGCAGTTGGATCCAGCTGCAAAGAAACTT...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATAAGTTTCTTTGCAGCTaGATCCAACTGCTAGAAGGC +
Preference number: 2 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHKFLCS*IQLLEG
Trigger: GCCTTCTAGCAGTTGGATCCAGCTGCAAAGAAACTT...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTAATTGCTTATGGCAGGTaGAAGGATTCCTGCAATATT +
Preference number: 2 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVIAYGR*KDSCNI
Trigger: AATATTGCAGGAATCCTTCCACCTGCCATAAGCAAT...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTGCACATGTAGCACTGTaGCGTGCACACAACACACAC +
Preference number: 2 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPAAHVAL*RAHNTH
Trigger: GTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGC...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp ATTAATGGAGGTATCAAAACAATGCACTGCTTTCAAATCAGGCCTGAATCAACACTAAAGGTGTCCAGCTaGAAGCTCATACCCTGGGAT +
Preference number: 2 (lower is better)
Translates to: INGGIKTMHCFQIRPESTLKVSS*KLIPWD
Trigger: ATCCCAGGGTATGAGCTTCCAGCTGGACACCTTTAG...TGTTGATTCAGGCCTGATTTGAAAGCAGTGCATTGTTTTGATACCTCCATTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR-3UTR CCA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCATTTACCTGCCCAGAGTaGACGGATTCAATTAAACTG +
Preference number: 2 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSFTCPE*TDSIKL
Trigger: CAGTTTAATTGAATCCGTCCACTCTGGGCAGGTAAA...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR TCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACGGATCAAGTGTAGGCTaGAGTCTGGATACCATGACT +
Preference number: 2 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDGSSVG*SLDTMT
Trigger: AGTCATGGTATCCAGACTTCAGCCTACACTTGATCC...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTAATTTGTCTTCAGAAATaGAGCCTTTCCAGTATTCCA +
Preference number: 2 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVICLQK*SLSSIP
Trigger: TGGAATACTGGAAAGGCTTCATTTCTGAAGACAAAT...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp TCATTAGTACATCAAATTGTGGCTGTAGGCCTGTTATCAATATGTCATAACTGGCTTCCAGTGGGACCTTaGAACAAGCAAATGCTACCA +
Preference number: 2 (lower is better)
Translates to: SLVHQIVAVGLLSICHNWLPVGP*NKQMLP
Trigger: TGGTAGCATTTGCTTGTTTCAAGGTCCCACTGGAAG...CCAGTTATGACATATTGATAACAGGCCTACAGCCACAATTTGATGTACTAATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR-3UTR TCA 90 bp AGTACACTCAGAAGTCTTTCCTTGGGCTCTAGTTTAGAGAGAACAAAGACTAGGAATTCCTCTCCAGTTTaGTTCAATACAGGAGCCTTT +
Preference number: 2 (lower is better)
Translates to: STLRSLSLGSSLERTKTRNSSPV*FNTGAF
Trigger: AAAGGCTCCTGTATTGAATCAAACTGGAGAGGAATT...CCTAGTCTTTGTTCTCTCTAAACTAGAGCCCAAGGAAAGACTTCTGAGTGTACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR TCA 90 bp ATCATGAAGCCATTCTCCTCATCCAGTTCACAGATACAGCGTACAATCTCATTAGCATCGTCTTCATCCTaGGACTCCTCAAAATTAGTT +
Preference number: 2 (lower is better)
Translates to: IMKPFSSSSSQIQRTISLASSSS*DSSKLV
Trigger: AACTAATTTTGAGGAGTCTCAGGATGAAGACGATGC...TAATGAGATTGTACGCTGTATCTGTGAACTGGATGAGGAGAATGGCTTCATGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR GCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTAAGCATACTCACTTATaGATACCTGCACATGTAGCA +
Preference number: 2 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLKHTHL*IPAHVA
Trigger: TGCTACATGTGCAGGTATGCATAAGTGAGTATGCTT...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR GCA 90 bp AGTACACTCAGAAGTCTTTCCTTGGGCTCTAGTTTAGAGAGAACAAAGACTAGGTCTCTCAAAGAAATGTaGTGCCCTCTACCTGATAAT +
Preference number: 2 (lower is better)
Translates to: STLRSLSLGSSLERTKTRSLKEM*CPLPDN
Trigger: ATTATCAGGTAGAGGGCAGCACATTTCTTTGAGAGA...CCTAGTCTTTGTTCTCTCTAAACTAGAGCCCAAGGAAAGACTTCTGAGTGTACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR GCA 90 bp AACACTTTATTCCCTGAAGCTGGATTCTTCTCTGACACTCCCCGATTTTTGTACTGTTATTTTTCTCTCTaGTTCAGCTACTGCCTGATC +
Preference number: 2 (lower is better)
Translates to: NTLFPEAGFFSDTPRFLYCYFSL*FSYCLI
Trigger: GATCAGGCAGTAGCTGAAGCAGAGAGAAAAATAACA...GTACAAAAATCGGGGAGTGTCAGAGAAGAATCCAGCTTCAGGGAATAAAGTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR TCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACAAATCCAGCAAGAGCTaGGTAAGCAACTTAGTTGCC +
Preference number: 2 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDKSSKS*VSNLVA
Trigger: GGCAACTAAGTTGCTTACTCAGCTCTTGCTGGATTT...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATATAACTACCCCACAATaGCTTCTGCTAAAGCATTCA +
Preference number: 2 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHITTPQ*LLLKHS
Trigger: TGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTAT...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATTCTAGGGTTCAGTCATaGTGGGAAAATTTAAAGCCA +
Preference number: 2 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHSRVQS*WENLKP
Trigger: TGGCTTTAAATTTTCCCATCATGACTGAACCCTAGA...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTAGCAGTATCAACATTTaGCACATTGGGCCCTTCTGC +
Preference number: 2 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPASSINI*HIGPFC
Trigger: GCAGAAGGGCCCAATGTGCCAAATGTTGATACTGCT...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTAGCAGTATCAACATTTaGCACATTGGGCCCTTCTGC +
Preference number: 2 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTSSINI*HIGPFC
Trigger: GCAGAAGGGCCCAATGTGCCAAATGTTGATACTGCT...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACATTGCTTATGGCAGGTaGAAGGATTCCTGCAATATT +
Preference number: 2 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDIAYGR*KDSCNI
Trigger: AATATTGCAGGAATCCTTCCACCTGCCATAAGCAAT...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp CTGTTTGTATTTTACAAGTCTCTACATTCTGTTCAACCCATTGCAAAGTGTATGGGCAGAGGCTTGAGTTaGAAATCCTTCAGTTGGTCA +
Preference number: 2 (lower is better)
Translates to: LFVFYKSLHSVQPIAKCMGRGLS*KSFSWS
Trigger: TGACCAACTGAAGGATTTCCAACTCAAGCCTCTGCC...CATACACTTTGCAATGGGTTGAACAGAATGTAGAGACTTGTAAAATACAAACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR GCA 90 bp TTTGATAGCTGTGCTCGCTTGTTATGTAAGTTTCTTCCATTCTCAGGGCTGGTTTTCTTTAGTGCAGCTTaGATTATCCTCATTGATTCT +
Preference number: 2 (lower is better)
Translates to: FDSCARLLCKFLPFSGLVFFSAA*IILIDS
Trigger: AGAATCAATGAGGATAATGCAAGCTGCACTAAAGAA...AACCAGCCCTGAGAATGGAAGAAACTTACATAACAAGCGAGCACAGCTATCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR GCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATAGGTGGAAGGATTCCTaGAATATTCAAATCCTCTTT +
Preference number: 2 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHRWKDS*NIQILF
Trigger: AAAGAGGATTTGAATATTGCAGGAATCCTTCCACCT...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp AGTACACTCAGAAGTCTTTCCTTGGGCTCTAGTTTAGAGAGAACAAAGACTAGGATTTTGGCCAAATGCTaGTTTATAAACATGGGTATC +
Preference number: 2 (lower is better)
Translates to: STLRSLSLGSSLERTKTRILAKC*FINMGI
Trigger: GATACCCATGTTTATAAACCAGCATTTGGCCAAAAT...CCTAGTCTTTGTTCTCTCTAAACTAGAGCCCAAGGAAAGACTTCTGAGTGTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR CCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACGCGCACAGGTTTGTATaGGTTAATGGCATTGCTTAT +
Preference number: 2 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDAHRFV*VNGIAY
Trigger: ATAAGCAATGCCATTAACCCATACAAACCTGTGCGC...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp AGTACACTCAGAAGTCTTTCCTTGGGCTCTAGTTTAGAGAGAACAAAGACTAGGAATTTACTCCACACATaGGTTACAGGCACTAATTTT +
Preference number: 2 (lower is better)
Translates to: STLRSLSLGSSLERTKTRNLLHT*VTGTNF
Trigger: AAAATTAGTGCCTGTAACCCATGTGTGGAGTAAATT...CCTAGTCTTTGTTCTCTCTAAACTAGAGCCCAAGGAAAGACTTCTGAGTGTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR CAA 90 bp CTTTTTATGGTTAGCTTGAGTTTCACGAAAGCAACTACAAGTATCTaGCCAATTCCATTCCATTTCTTTAGTGCAGCTTGCATTATCCTC +
Preference number: 2 (lower is better)
Translates to: LFMVSLSFTKATTSI*PIPFHFFSAACIIL
Trigger: GAGGATAATGCAAGCTGCACTAAAGAAATGGAATGGAATTGGCAAGATACTTGTAGTTGCTTTCGTGAAACTCAAGCTAACCATAAAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR CAA 90 bp GGACAACAGAAGTTAGCAACAATCAAAATTTCTCATTTAGGTCTCTaGCTGATACCAACTGAGATAGTTAAGAGCTTTCTAACTCGGCTT +
Preference number: 2 (lower is better)
Translates to: GQQKLATIKISHLGL*LIPTEIVKSFLTRL
Trigger: AAGCCGAGTTAGAAAGCTCTTAACTATCTCAGTTGGTATCAGCAAGAGACCTAAATGAGAAATTTTGATTGTTGCTAACTTCTGTTGTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR-3UTR TCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTCAAGGTGACCAGAACTaGATTCTTCTGAGTTCTGAA +
Preference number: 2 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTQGDQN*ILLSSE
Trigger: TTCAGAACTCAGAAGAATTCAGTTCTGGTCACCTTG...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR GCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATAACGCAGAGTTCTTCTaGATATATGATAAGAACCAA +
Preference number: 2 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHNAEFF*IYDKNQ
Trigger: TTGGTTCTTATCATATATGCAGAAGAACTCTGCGTT...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR GCA 90 bp TCATTAGTACATCAAATTGTGGCTGTAGGCCTGTTATCAATATGTCATAACTGGGAGGTATCAAAACAATaGACTGCTTTCAAATCAGGC +
Preference number: 2 (lower is better)
Translates to: SLVHQIVAVGLLSICHNWEVSKQ*TAFKSG
Trigger: GCCTGATTTGAAAGCAGTGCATTGTTTTGATACCTC...CCAGTTATGACATATTGATAACAGGCCTACAGCCACAATTTGATGTACTAATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR-3UTR CCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTGCGCACAGGTTTGTATaGGTTAATGGCATTGCTTAT +
Preference number: 2 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPAAHRFV*VNGIAY
Trigger: ATAAGCAATGCCATTAACCCATACAAACCTGTGCGC...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATAATTTACTCCACACATaGGTTACAGGCACTAATTTT +
Preference number: 2 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHNLLHT*VTGTNF
Trigger: AAAATTAGTGCCTGTAACCCATGTGTGGAGTAAATT...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTTCCGTACTCCACACATaGAACATTTCAGACTTTGTG +
Preference number: 2 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTSVLHT*NISDFV
Trigger: CACAAAGTCTGAAATGTTCCATGTGTGGAGTACGGA...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR TCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTAATTTCCTTACAGTGTaGTTTTGGCCAAATGCTGGT +
Preference number: 2 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPANFLTV*FWPNAG
Trigger: ACCAGCATTTGGCCAAAATCACACTGTAAGGAAATT...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR GCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTAAGCATACTCACTTATaGATACCTGCACATGTAGCA +
Preference number: 2 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTKHTHL*IPAHVA
Trigger: TGCTACATGTGCAGGTATGCATAAGTGAGTATGCTT...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR GCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTTCTCTCAAAGAAATGTaGTGCCCTCTACCTGATAAT +
Preference number: 2 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTSLKEM*CPLPDN
Trigger: ATTATCAGGTAGAGGGCAGCACATTTCTTTGAGAGA...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR CAA 90 bp TTCGATTTTGTTTCTAATGAACTAAGTACACTCAGAAGTCTTTCCTaGGGCTCTAGTTTAGAGAGAACAAAGACTAGGAATTTCAAAGTC +
Preference number: 2 (lower is better)
Translates to: FDFVSNELSTLRSLS*GSSLERTKTRNFKV
Trigger: GACTTTGAAATTCCTAGTCTTTGTTCTCTCTAAACTAGAGCCCAAGGAAAGACTTCTGAGTGTACTTAGTTCATTAGAAACAAAATCGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR CAA 90 bp CTTTACCTATGGGATGTTACAAGTCAAATTCAGGCTGACCAGCTATaGTCCCAATTTACAGATACCAAAAATAGCTTAGTTTTAAACAAG +
Preference number: 2 (lower is better)
Translates to: LYLWDVTSQIQADQL*SQFTDTKNSLVLNK
Trigger: CTTGTTTAAAACTAAGCTATTTTTGGTATCTGTAAATTGGGACAATAGCTGGTCAGCCTGAATTTGACTTGTAACATCCCATAGGTAAAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR GCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACTTCTTTAGTGCAGCTTaGATTATCCTCATTGATTCT +
Preference number: 2 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDFFSAA*IILIDS
Trigger: AGAATCAATGAGGATAATGCAAGCTGCACTAAAGAA...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR GCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGTGATTTTGGCCAAATaGTGGTTTATAAACATGGGT +
Preference number: 2 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTVILAK*WFINMG
Trigger: ACCCATGTTTATAAACCAGCATTTGGCCAAAATCAC...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR GCA 90 bp CTGTTTGTATTTTACAAGTCTCTACATTCTGTTCAACCCATTGCAAAGTGTATGAGGTGGAAGGATTCCTaGAATATTCAAATCCTCTTT +
Preference number: 2 (lower is better)
Translates to: LFVFYKSLHSVQPIAKCMRWKDS*NIQILF
Trigger: AAAGAGGATTTGAATATTGCAGGAATCCTTCCACCT...CATACACTTTGCAATGGGTTGAACAGAATGTAGAGACTTGTAAAATACAAACAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR GCA 90 bp CTGTTTGTATTTTACAAGTCTCTACATTCTGTTCAACCCATTGCAAAGTGTATGCCCTCTCCAGTTCATTaGTTAGAATTCAAAACAATG +
Preference number: 2 (lower is better)
Translates to: LFVFYKSLHSVQPIAKCMPSPVH*LEFKTM
Trigger: CATTGTTTTGAATTCTAAGCAATGAACTGGAGAGGG...CATACACTTTGCAATGGGTTGAACAGAATGTAGAGACTTGTAAAATACAAACAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR GCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTCCCTCTCCAGTTCATTaGTTAGAATTCAAAACAATG +
Preference number: 2 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTPSPVH*LEFKTM
Trigger: CATTGTTTTGAATTCTAAGCAATGAACTGGAGAGGG...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR GCA 90 bp CATCCAGGATATATGTCTGAGTGTATGCATAAACCTTTCCATGCATATTTAGAAGGGGAGGAAGTAGTATaGTTCAGTTTTAACATGAAA +
Preference number: 2 (lower is better)
Translates to: HPGYMSECMHKPFHAYLEGEEVV*FSFNMK
Trigger: TTTCATGTTAAAACTGAAGCATACTACTTCCTCCCC...TTCTAAATATGCATGGAAAGGTTTATGCATACACTCAGACATATATCCTGGATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR CCA 90 bp CTGTTTGTATTTTACAAGTCTCTACATTCTGTTCAACCCATTGCAAAGTGTATGTGGTTCTATAGTAACTaGGTATGTGCGTATAATCTG +
Preference number: 2 (lower is better)
Translates to: LFVFYKSLHSVQPIAKCMWFYSN*VCAYNL
Trigger: CAGATTATACGCACATACCCAGTTACTATAGAACCA...CATACACTTTGCAATGGGTTGAACAGAATGTAGAGACTTGTAAAATACAAACAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR GCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTAACGCAGAGTTCTTCTaGATATATGATAAGAACCAA +
Preference number: 2 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTNAEFF*IYDKNQ
Trigger: TTGGTTCTTATCATATATGCAGAAGAACTCTGCGTT...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTATGTATGGTGATCTTTaGCACATTTGTCAGTTGAAA +
Preference number: 2 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTMYGDL*HICQLK
Trigger: TTTCAACTGACAAATGTGCCAAAGATCACCATACAT...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CCA 90 bp CATCCAGGATATATGTCTGAGTGTATGCATAAACCTTTCCATGCATATTTAGAAATGTATGGTGATCTTTaGCACATTTGTCAGTTGAAA +
Preference number: 2 (lower is better)
Translates to: HPGYMSECMHKPFHAYLEMYGDL*HICQLK
Trigger: TTTCAACTGACAAATGTGCCAAAGATCACCATACAT...TTCTAAATATGCATGGAAAGGTTTATGCATACACTCAGACATATATCCTGGATG
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR CCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTATGTATGGTGATCTTTaGCACATTTGTCAGTTGAAA +
Preference number: 2 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPAMYGDL*HICQLK
Trigger: TTTCAACTGACAAATGTGCCAAAGATCACCATACAT...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR GCA 72 bp GGTCCCGACAGATGTAGCAGATGTACTGCTCCGGAATaGTGTCCTCCAGGAGCCCCATGCACACACTGTGCT +
Preference number: 3 (lower is better)
Translates to: GPDRCSRCTAPE*CPPGAPCTHCA
Trigger: AGCACAGTGTGTGCATGGGGCTCCTGGAGGACAGCATTCCGGAGCAGTACATCTGCTACATCTGTCGGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR CAA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGTCAACATTTGGCACATaGGGCCCTTCTGCAAGCCAC +
Preference number: 3 (lower is better)
Translates to: TCSTVACTQHTPGLADSRSTFGT*GPSASH
Trigger: GTGGCTTGCAGAAGGGCCCAATGTGCCAAATGTTGA...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR TCA 72 bp ACATTTTCTATGTGCGTGAGGAGATTTAGCTGCCACTaGAGATGCGAGTCTCCTGGGCCCTCCGTGCCCTTT +
Preference number: 3 (lower is better)
Translates to: TFSMCVRRFSCH*RCESPGPSVPF
Trigger: AAAGGGCACGGAGGGCCCAGGAGACTCGCATCTTCAGTGGCAGCTAAATCTCCTCACGCACATAGAAAATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR TCA 72 bp GTCTTGCAAGGGGATCTGGTGGCTCCAACTCCCCTGTaGAATCAAGCCAGCTTTCCAGAACGTCCACTTCTT +
Preference number: 3 (lower is better)
Translates to: VLQGDLVAPTPL*NQASFPERPLL
Trigger: AAGAAGTGGACGTTCTGGAAAGCTGGCTTGATTTCACAGGGGAGTTGGAGCCACCAGATCCCCTTGCAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR GCA 72 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTaGACACAACACACACCAGGACTGGCAGACAGTAGG +
Preference number: 3 (lower is better)
Translates to: SLMHTCTCSTVA*TQHTPGLADSR
Trigger: CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR GCA 72 bp GCTAAAGGTGTCCAGCTGGAAGCTCATACCCTGGGATaGCTGTCTCCAGGCCTTCTAATTGTGGAGACAATG +
Preference number: 3 (lower is better)
Translates to: AKGVQLEAHTLG*LSPGLLIVETM
Trigger: CATTGTCTCCACAATTAGAAGGCCTGGAGACAGGCATCCCAGGGTATGAGCTTCCAGCTGGACACCTTTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR-3UTR CAA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGTATGGGTTAATGGCATaGCTTATGGCAGGTGGAAGG +
Preference number: 3 (lower is better)
Translates to: TCSTVACTQHTPGLADSRYGLMA*LMAGGR
Trigger: CCTTCCACCTGCCATAAGCAATGCCATTAACCCATA...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR CCA 72 bp CATACTCACTTATGCATACCTGCACATGTAGCACTGTaGCGTGCACACAACACACACCAGGACTGGCAGACA +
Preference number: 3 (lower is better)
Translates to: HTHLCIPAHVAL*RAHNTHQDWQT
Trigger: TGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGAGTATG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGCAGCAGTATCAACATTaGGCACATTGGGCCCTTCTG +
Preference number: 3 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRQQYQH*AHWALL
Trigger: CAGAAGGGCCCAATGTGCCAAATGTTGATACTGCTG...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR TCA 72 bp GGCAACTGCAATCACGTAGTACTACAGCTCCGTGAGTaGCCTTCCAGTGGGACCTTGAAACAAGCAAATGCT +
Preference number: 3 (lower is better)
Translates to: GNCNHVVLQLRE*PSSGTLKQANA
Trigger: AGCATTTGCTTGTTTCAAGGTCCCACTGGAAGGTCACTCACGGAGCTGTAGTACTACGTGATTGCAGTTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR CCA 72 bp ACAGAGCACACCCAGTATGTGGCGCACAGGTTTGTATaGGTTAATGGCATTGCTTATGGCAGGTGGAAGGAT +
Preference number: 3 (lower is better)
Translates to: TEHTQYVAHRFV*VNGIAYGRWKD
Trigger: ATCCTTCCACCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGTGTGCTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGACTTGCATTATCCTCATaGATTCTTGGCATAGGTTAC +
Preference number: 3 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGLALSS*ILGIGY
Trigger: GTAACCTATGCCAAGAATCAATGAGGATAATGCAAG...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGCCTTACAGTGTGATTTaGGCCAAATGCTGGTTTATA +
Preference number: 3 (lower is better)
Translates to: TCSTVACTQHTPGLADSRPYSVI*AKCWFI
Trigger: TATAAACCAGCATTTGGCCAAAATCACACTGTAAGG...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGACCTTACAGTGTGATTTaGGCCAAATGCTGGTTTATA +
Preference number: 3 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGPYSVI*AKCWFI
Trigger: TATAAACCAGCATTTGGCCAAAATCACACTGTAAGG...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCATATGGGTTAATGGCATaGCTTATGGCAGGTGGAAGG +
Preference number: 3 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPYGLMA*LMAGGR
Trigger: CCTTCCACCTGCCATAAGCAATGCCATTAACCCATA...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGGATCAACAGACAGAATaGCCCTCGGGTACTGATAAG +
Preference number: 3 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRDQQTE*PSGTDK
Trigger: CTTATCAGTACCCGAGGGCAATTCTGTCTGTTGATC...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR CAA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGACTTTTTATGGTTAGCTaGAGTTTCACGAAAGCAACT +
Preference number: 3 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGLFMVS*SFTKAT
Trigger: AGTTGCTTTCGTGAAACTCAAGCTAACCATAAAAAG...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAGGAACATTTCAGACTTaGTGTGGGAACACTGAGTCT +
Preference number: 3 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPGTFQT*CGNTES
Trigger: AGACTCAGTGTTCCCACACAAAGTCTGAAATGTTCC...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp AGGATGGAAAAGCATGCACAGCTCAGTATGTACAGGTATTGTGGGTACGTGAACCCTTCCAGTGGGACCTaGAAACAAGCAAATGCTACC +
Preference number: 3 (lower is better)
Translates to: RMEKHAQLSMYRYCGYVNPSSGT*KQANAT
Trigger: GGTAGCATTTGCTTGTTTCAAGGTCCCACTGGAAGG...GTTCACGTACCCACAATACCTGTACATACTGAGCTGTGCATGCTTTTCCATCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR-3UTR CAA 90 bp TTCCAGAACGTCCACTTCTTTTTCTATGAGGTCCATCCTGCTGGTGACTTCATTCAGCAGTATCAACATTaGGCACATTGGGCCCTTCTG +
Preference number: 3 (lower is better)
Translates to: FQNVHFFFYEVHPAGDFIQQYQH*AHWALL
Trigger: CAGAAGGGCCCAATGTGCCAAATGTTGATACTGCTG...AATGAAGTCACCAGCAGGATGGACCTCATAGAAAAAGAAGTGGACGTTCTGGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR TCA 72 bp TGGTTCCTTGTGGTTCTGTACACACTCCTTCCCCTCTaGGTTAGCTCTGTCCTGAGGTGTTATTTTTCTCTC +
Preference number: 3 (lower is better)
Translates to: WFLVVLYTLLPL*VSSVLRCYFSL
Trigger: GAGAGAAAAATAACACCTCAGGACAGAGCTAACTCAGAGGGGAAGGAGTGTGTACAGAACCACAAGGAACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR GCA 72 bp TTTCCCTGTATAGTTCACTGTCTGGTCAGACCTTCCTaGCAACCTATGCTTTTCAGCTTTCTAGCACTCTCC +
Preference number: 3 (lower is better)
Translates to: FPCIVHCLVRPS*QPMLFSFLALS
Trigger: GGAGAGTGCTAGAAAGCTGAAAAGCATAGGTTGGCAGGAAGGTCTGACCAGACAGTGAACTATACAGGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR CAA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGCTTGCATTATCCTCATaGATTCTTGGCATAGGTTAC +
Preference number: 3 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRLALSS*ILGIGY
Trigger: GTAACCTATGCCAAGAATCAATGAGGATAATGCAAG...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp CCACTCCTTATCATAACGATATTTTGCACTCCATCTCTGACCCGGAGGGTCCCGCTTTTTATGGTTAGCTaGAGTTTCACGAAAGCAACT +
Preference number: 3 (lower is better)
Translates to: PLLIITIFCTPSLTRRVPLFMVS*SFTKAT
Trigger: AGTTGCTTTCGTGAAACTCAAGCTAACCATAAAAAG...CGGGACCCTCCGGGTCAGAGATGGAGTGCAAAATATCGTTATGATAAGGAGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR CAA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCACCTTACAGTGTGATTTaGGCCAAATGCTGGTTTATA +
Preference number: 3 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPPYSVI*AKCWFI
Trigger: TATAAACCAGCATTTGGCCAAAATCACACTGTAAGG...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATTCAACATTTGGCACATaGGGCCCTTCTGCAAGCCAC +
Preference number: 3 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHSTFGT*GPSASH
Trigger: GTGGCTTGCAGAAGGGCCCAATGTGCCAAATGTTGA...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp TTGAGTTGGAAATCCTTCAGTTGGTCATCCAGACATGACCCTCTGGATCTTCAAAGAATCCAAACCCCATaGCTCACAGCAATCCTTCTG +
Preference number: 3 (lower is better)
Translates to: LSWKSFSWSSRHDPLDLQRIQTP*LTAILL
Trigger: CAGAAGGATTGCTGTGAGCAATGGGGTTTGGATTCT...TTGAAGATCCAGAGGGTCATGTCTGGATGACCAACTGAAGGATTTCCAACTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR TCA 72 bp ATTCGGGAGAAGGCAGAGTTAAAAGTGTCTCATCAATaGGTCAGTGCTCTATCCCCATATCTGATCAGAGGG +
Preference number: 3 (lower is better)
Translates to: IREKAELKVSHQ*VSALSPYLIRG
Trigger: CCCTCTGATCAGATATGGGGATAGAGCACTGACTCATTGATGAGACACTTTTAACTCTGCCTTCTCCCGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR CCA 72 bp CTCTCCACAAGGCCTCCTAAGGTTGTTCTTTACCTATaGGATGTTACAAGTCAAATTCAGGCTGACCAGCTA +
Preference number: 3 (lower is better)
Translates to: LSTRPPKVVLYL*DVTSQIQADQL
Trigger: TAGCTGGTCAGCCTGAATTTGACTTGTAACATCCCATAGGTAAAGAACAACCTTAGGAGGCCTTGTGGAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR CCA 72 bp GTCTGTGAGAGACTGGCAGTCCTGACTAAAGCTTTGTaGCTTTTGATAGCTGTGCTCGCTTGTTATGTAAGT +
Preference number: 3 (lower is better)
Translates to: VCERLAVLTKAL*LLIAVLACYVS
Trigger: ACTTACATAACAAGCGAGCACAGCTATCAAAAGCCACAAAGCTTTAGTCAGGACTGCCAGTCTCTCACAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR CAA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCACTTTTTATGGTTAGCTaGAGTTTCACGAAAGCAACT +
Preference number: 3 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPLFMVS*SFTKAT
Trigger: AGTTGCTTTCGTGAAACTCAAGCTAACCATAAAAAG...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATCAGCAGTATCAACATTaGGCACATTGGGCCCTTCTG +
Preference number: 3 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHQQYQH*AHWALL
Trigger: CAGAAGGGCCCAATGTGCCAAATGTTGATACTGCTG...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp CTGACTAAAGCTTTGTGGCTTTTGATAGCTGTGCTCGCTTGTTATGTAAGTTTCAGCTACTGCCTGATCTaGGTCTTTCCTCTTCCCAGA +
Preference number: 3 (lower is better)
Translates to: LTKALWLLIAVLACYVSFSYCLI*VFPLPR
Trigger: TCTGGGAAGAGGAAAGACCAAGATCAGGCAGTAGCT...GAAACTTACATAACAAGCGAGCACAGCTATCAAAAGCCACAAAGCTTTAGTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR GCA 72 bp TTTTCTATGAGGTCCATCCTGCTGGTGACTTCATTCTaGACATTTTCTATGTGCGTGAGGAGATTTAGCTGC +
Preference number: 3 (lower is better)
Translates to: FSMRSILLVTSF*TFSMCVRRFSC
Trigger: GCAGCTAAATCTCCTCACGCACATAGAAAATGTGCAGAATGAAGTCACCAGCAGGATGGACCTCATAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR CAA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACTCAACATTTGGCACATaGGGCCCTTCTGCAAGCCAC +
Preference number: 3 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDSTFGT*GPSASH
Trigger: GTGGCTTGCAGAAGGGCCCAATGTGCCAAATGTTGA...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATTATGGGTTAATGGCATaGCTTATGGCAGGTGGAAGG +
Preference number: 3 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHYGLMA*LMAGGR
Trigger: CCTTCCACCTGCCATAAGCAATGCCATTAACCCATA...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp AACACTTTATTCCCTGAAGCTGGATTCTTCTCTGACACTCCCCGATTTTTGTACAAAGCTTTGTGGCTTTaGATAGCTGTGCTCGCTTGT +
Preference number: 3 (lower is better)
Translates to: NTLFPEAGFFSDTPRFLYKALWL*IAVLAC
Trigger: ACAAGCGAGCACAGCTATCAAAAGCCACAAAGCTTT...GTACAAAAATCGGGGAGTGTCAGAGAAGAATCCAGCTTCAGGGAATAAAGTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR TCA 72 bp AAGCATTGTGAAAGATCTTTACATGAGGCAGAGGCTTaGGTTGGAAATCCTTCAGTTGGTCATCCAGACATG +
Preference number: 3 (lower is better)
Translates to: KHCERSLHEAEA*VGNPSVGHPDM
Trigger: CATGTCTGGATGACCAACTGAAGGATTTCCAACTCAAGCCTCTGCCTCATGTAAAGATCTTTCACAATGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR TCA 72 bp AGCATCGTCTTCATCCTGAGACTCCTCAAAATTAGTTaGATCAAAGTCTTGGTTGTACTCATCCCCACTCAG +
Preference number: 3 (lower is better)
Translates to: SIVFILRLLKIS*IKVLVVLIPTQ
Trigger: CTGAGTGGGGATGAGTACAACCAAGACTTTGATTCAACTAATTTTGAGGAGTCTCAGGATGAAGACGATGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR GCA 72 bp ATGTATGTTGACTACTTAATCAAGCATACTCACTTATaGATACCTGCACATGTAGCACTGTGGCGTGCACAC +
Preference number: 3 (lower is better)
Translates to: MYVDYLIKHTHL*IPAHVALWRAH
Trigger: GTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGAGTATGCTTGATTAAGTAGTCAACATACAT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR CCA 72 bp AAATCCTCTTTCCAGCAGTATCAACATTTGGCACATTaGGCCCTTCTGCAAGCCACTTTACTTTTAAAGAGC +
Preference number: 3 (lower is better)
Translates to: KSSFQQYQHLAH*ALLQATLLLKS
Trigger: GCTCTTTAAAAGTAAAGTGGCTTGCAGAAGGGCCCAATGTGCCAAATGTTGATACTGCTGGAAAGAGGATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR CCA 72 bp GGAAATCCTTCAGTTGGTCATCCAGACATGACCCTCTaGATCTTCAAAATTCTCAAGTCTTCAACAGTGAAG +
Preference number: 3 (lower is better)
Translates to: GNPSVGHPDMTL*IFKILKSSTVK
Trigger: CTTCACTGTTGAAGACTTGAGAATTTTGAAGATCCAGAGGGTCATGTCTGGATGACCAACTGAAGGATTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR CAA 90 bp TTGAGTTGGAAATCCTTCAGTTGGTCATCCAGACATGACCCTCTGGATCTTCAACTTGCATTATCCTCATaGATTCTTGGCATAGGTTAC +
Preference number: 3 (lower is better)
Translates to: LSWKSFSWSSRHDPLDLQLALSS*ILGIGY
Trigger: GTAACCTATGCCAAGAATCAATGAGGATAATGCAAG...TTGAAGATCCAGAGGGTCATGTCTGGATGACCAACTGAAGGATTTCCAACTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR CAA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTAGCAACTACAAGTATCTaGCCAATTCCATTCCATTTC +
Preference number: 3 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVATTSI*PIPFHF
Trigger: GAAATGGAATGGAATTGGCAAGATACTTGTAGTTGC...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp CATCCAGGATATATGTCTGAGTGTATGCATAAACCTTTCCATGCATATTTAGAATCAACATTTGGCACATaGGGCCCTTCTGCAAGCCAC +
Preference number: 3 (lower is better)
Translates to: HPGYMSECMHKPFHAYLESTFGT*GPSASH
Trigger: GTGGCTTGCAGAAGGGCCCAATGTGCCAAATGTTGA...TTCTAAATATGCATGGAAAGGTTTATGCATACACTCAGACATATATCCTGGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR CAA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCATATCATAACGATATTTaGCACTCCATCTCTGACCCG +
Preference number: 3 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSYHNDI*HSISDP
Trigger: CGGGTCAGAGATGGAGTGCAAAATATCGTTATGATA...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR TCA 72 bp AGGATGATAGAATGTGATTCCTTTTGGCTGCTGATCTaGCTACAAGAGCATTTGCCATCTTCCCAAAATCTG +
Preference number: 3 (lower is better)
Translates to: RMIECDSFWLLI*LQEHLPSSQNL
Trigger: CAGATTTTGGGAAGATGGCAAATGCTCTTGTAGTCAGATCAGCAGCCAAAAGGAATCACATTCTATCATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR TCA 72 bp CTTGAGTTGGAAATCCTTCAGTTGGTCATCCAGACATaGCCCTCTGGATCTTCAAAATTCTCAAGTCTTCAA +
Preference number: 3 (lower is better)
Translates to: LELEILQLVIQT*PSGSSKFSSLQ
Trigger: TTGAAGACTTGAGAATTTTGAAGATCCAGAGGGTCATGTCTGGATGACCAACTGAAGGATTTCCAACTCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR CCA 72 bp AGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGTaGAAGGATTCCTGCAATATTCAAATCCTCTTTCCA +
Preference number: 3 (lower is better)
Translates to: RFVWVNGIAYGR*KDSCNIQILFP
Trigger: TGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGCAATGCCATTAACCCATACAAACCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR-3UTR CAA 90 bp TTTGATAGCTGTGCTCGCTTGTTATGTAAGTTTCTTCCATTCTCAGGGCTGGTTGCAACTACAAGTATCTaGCCAATTCCATTCCATTTC +
Preference number: 3 (lower is better)
Translates to: FDSCARLLCKFLPFSGLVATTSI*PIPFHF
Trigger: GAAATGGAATGGAATTGGCAAGATACTTGTAGTTGC...AACCAGCCCTGAGAATGGAAGAAACTTACATAACAAGCGAGCACAGCTATCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR CAA 90 bp CTGTTTGTATTTTACAAGTCTCTACATTCTGTTCAACCCATTGCAAAGTGTATGCAGCAGTATCAACATTaGGCACATTGGGCCCTTCTG +
Preference number: 3 (lower is better)
Translates to: LFVFYKSLHSVQPIAKCMQQYQH*AHWALL
Trigger: CAGAAGGGCCCAATGTGCCAAATGTTGATACTGCTG...CATACACTTTGCAATGGGTTGAACAGAATGTAGAGACTTGTAAAATACAAACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR CAA 90 bp CCAACTGAGATAGTTAAGAGCTTTCTAACTCGGCTTTTTAGCTTAGAAGCAAGGCAAAGACTTAACCGTTaGATGCTCACAGAAAACTGG +
Preference number: 3 (lower is better)
Translates to: PTEIVKSFLTRLFSLEARQRLNR*MLTENW
Trigger: CCAGTTTTCTGTGAGCATCAAACGGTTAAGTCTTTG...CCTTGCTTCTAAGCTAAAAAGCCGAGTTAGAAAGCTCTTAACTATCTCAGTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR-3UTR CAA 90 bp ATCATGAAGCCATTCTCCTCATCCAGTTCACAGATACAGCGTACAATCTCATTACCTTACAGTGTGATTTaGGCCAAATGCTGGTTTATA +
Preference number: 3 (lower is better)
Translates to: IMKPFSSSSSQIQRTISLPYSVI*AKCWFI
Trigger: TATAAACCAGCATTTGGCCAAAATCACACTGTAAGG...TAATGAGATTGTACGCTGTATCTGTGAACTGGATGAGGAGAATGGCTTCATGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR CAA 90 bp CATCCAGGATATATGTCTGAGTGTATGCATAAACCTTTCCATGCATATTTAGAATATGGGTTAATGGCATaGCTTATGGCAGGTGGAAGG +
Preference number: 3 (lower is better)
Translates to: HPGYMSECMHKPFHAYLEYGLMA*LMAGGR
Trigger: CCTTCCACCTGCCATAAGCAATGCCATTAACCCATA...TTCTAAATATGCATGGAAAGGTTTATGCATACACTCAGACATATATCCTGGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR TCA 72 bp ACTCTAACCATGCTAATTTCATGGCCTGCACATAGATaGCACTCAGTGATAGGTGATATCGAGTTCATGTAT +
Preference number: 3 (lower is better)
Translates to: TLTMLISWPAHR*HSVIGDIEFMY
Trigger: ATACATGAACTCGATATCACCTATCACTGAGTGTCATCTATGTGCAGGCCATGAAATTAGCATGGTTAGAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR TCA 72 bp CAGCGTACAATCTCATTAAGAGCATCGTCTTCATCCTaGGACTCCTCAAAATTAGTTGAATCAAAGTCTTGG +
Preference number: 3 (lower is better)
Translates to: QRTISLRASSSS*DSSKLVESKSW
Trigger: CCAAGACTTTGATTCAACTAATTTTGAGGAGTCTCAGGATGAAGACGATGCTCTTAATGAGATTGTACGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR GCA 72 bp TATGTAGGATTTAAAAAGGCAGAATCCAAACCCCATTaGTCACAGCAATCCTTCTGCTTATTTGCTTTCTCC +
Preference number: 3 (lower is better)
Translates to: YVGFKKAESKPH*SQQSFCLFAFS
Trigger: GGAGAAAGCAAATAAGCAGAAGGATTGCTGTGAGCAATGGGGTTTGGATTCTGCCTTTTTAAATCCTACATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR-3UTR CAA 90 bp ATTAATGGAGGTATCAAAACAATGCACTGCTTTCAAATCAGGCCTGAATCAACATGTGTAAGGGTCTTTTaGAAAGCTAAAGGTGTCCAG +
Preference number: 3 (lower is better)
Translates to: INGGIKTMHCFQIRPESTCVRVF*KAKGVQ
Trigger: CTGGACACCTTTAGCTTTCAAAAAGACCCTTACACA...TGTTGATTCAGGCCTGATTTGAAAGCAGTGCATTGTTTTGATACCTCCATTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR CCA 72 bp TCTCTACATTCTGTTCAACCCATTGCAAAGTGTATGTaGATGACAAGCATTGTGAAAGATCTTTACATGAGG +
Preference number: 3 (lower is better)
Translates to: SLHSVQPIAKCM*MTSIVKDLYMR
Trigger: CCTCATGTAAAGATCTTTCACAATGCTTGTCATCCACATACACTTTGCAATGGGTTGAACAGAATGTAGAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR TCA 72 bp AATACTGTGCATTATTTTAATCAAGGTGACCAGAACTaGATTCTTCTGAGTTCTGAACGCAGAGTTCTTCTG +
Preference number: 3 (lower is better)
Translates to: NTVHYFNQGDQN*ILLSSERRVLL
Trigger: CAGAAGAACTCTGCGTTCAGAACTCAGAAGAATTCAGTTCTGGTCACCTTGATTAAAATAATGCACAGTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR GCA 72 bp ATCTTGCCAATTCCATTCCATTTCTTTAGTGCAGCTTaGATTATCCTCATTGATTCTTGGCATAGGTTACAT +
Preference number: 3 (lower is better)
Translates to: ILPIPFHFFSAA*IILIDSWHRLH
Trigger: ATGTAACCTATGCCAAGAATCAATGAGGATAATGCAAGCTGCACTAAAGAAATGGAATGGAATTGGCAAGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR GCA 72 bp GTTATACAGAGCAAAGAGTTGCAATTTGTTGTACTTTaGCCACGTCAAGTAAGAGTTGTTTTAAGTGACGTT +
Preference number: 3 (lower is better)
Translates to: VIQSKELQFVVL*PRQVRVVLSDV
Trigger: AACGTCACTTAAAACAACTCTTACTTGACGTGGGCAAAGTACAACAAATTGCAACTCTTTGCTCTGTATAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
3UTR-3UTR CAA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTCTTTTTATGGTTAGCTaGAGTTTCACGAAAGCAACT +
Preference number: 3 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPALFMVS*SFTKAT
Trigger: AGTTGCTTTCGTGAAACTCAAGCTAACCATAAAAAG...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR TCA 72 bp CACACATGGAACATTTCAGACTTTGTGTGGGAACACTaGGTCTGTACTATAATACTGTGCATTATTTTAATC +
Preference number: 3 (lower is better)
Translates to: HTWNISDFVWEH*VCTIILCIILI
Trigger: GATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCACACAAAGTCTGAAATGTTCCATGTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR GCA 72 bp TGTATTTTACAAGTCTCTACATTCTGTTCAACCCATTaGAAAGTGTATGTGGATGACAAGCATTGTGAAAGA +
Preference number: 3 (lower is better)
Translates to: CILQVSTFCSTH*KVYVDDKHCER
Trigger: TCTTTCACAATGCTTGTCATCCACATACACTTTGCAATGGGTTGAACAGAATGTAGAGACTTGTAAAATACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR CCA 72 bp CTTTTCCTACAGGCTTTTAACTCATCTATCATTACATaGATTTCCATGGTTCTCTATTGGATAGCATCCATT +
Preference number: 3 (lower is better)
Translates to: LFLQAFNSSIIT*ISMVLYWIASI
Trigger: AATGGATGCTATCCAATAGAGAACCATGGAAATCCATGTAATGATAGATGAGTTAAAAGCCTGTAGGAAAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR TCA 72 bp TGTTTTCTTGGATATTGGAGTCTTTGTATTTTATCATaGCACATTCTTGGCATGAGACTTAAGTCTAACCGT +
Preference number: 3 (lower is better)
Translates to: CFLGYWSLCILS*HILGMRLKSNR
Trigger: ACGGTTAGACTTAAGTCTCATGCCAAGAATGTGTCATGATAAAATACAAAGACTCCAATATCCAAGAAAACA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGGAGAGTCATCAGGCATaGGTAAGGTGGCTAAGCGCT +
Preference number: 4 (lower is better)
Translates to: TCSTVACTQHTPGLADSRESHQA*VRWLSA
Trigger: AGCGCTTAGCCACCTTACCCATGCCTGATGACTCTC...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGACTGCAGCAGCTGCTTTaGCTAAAGCAATCCAGTCCT +
Preference number: 4 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGLQQLL*LKQSSP
Trigger: AGGACTGGATTGCTTTAGTCAAAGCAGCTGCTGCAG...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGAATGCACACACTGTGCTaGCAGCATAGGCACTCTTCA +
Preference number: 4 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGMHTLC*QHRHSS
Trigger: TGAAGAGTGCCTATGCTGGCAGCACAGTGTGTGCAT...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp CTCTCCACAAGGCCTCCTAAGGTTGTTCTTTACCTATGGGATGTTACAAGTCAACCTCCAGGAGCCCCATaGACACACTGTGCTGCCAGC +
Preference number: 4 (lower is better)
Translates to: LSTRPPKVVLYLWDVTSQPPGAP*THCAAS
Trigger: GCTGGCAGCACAGTGTGTGCATGGGGCTCCTGGAGG...TTGACTTGTAACATCCCATAGGTAAAGAACAACCTTAGGAGGCCTTGTGGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR GCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAAAGTTGGGGCAGTCTTaGAAGGGGATCTGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPKLGQS*KGIWWL
Trigger: GAGCCACCAGATCCCCTTGCAAGACTGCCCCAACTT...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGACTCCAGCGCTCAAAATaGACTAGCATCTTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGLQRSK*TSIFPS
Trigger: AGAAGGGAAGATGCTAGTCCATTTTGAGCGCTGGAG...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGTGTGCTCTCTGGCTGTaGAAAGACGATCTTTGGAAC +
Preference number: 4 (lower is better)
Translates to: TCSTVACTQHTPGLADSRCALWL*KDDLWN
Trigger: GTTCCAAAGATCGTCTTTCCACAGCCAGAGAGCACA...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAAAGATGCGAGTCTCCTaGGCCCTCCGTGCCCTTTTT +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPKMRVS*ALRALF
Trigger: AAAAAGGGCACGGAGGGCCCAGGAGACTCGCATCTT...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCATCTTGCAAGGGGATCTaGTGGCTCCAACTCCCCTGT +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPSCKGI*WLQLPC
Trigger: ACAGGGGAGTTGGAGCCACCAGATCCCCTTGCAAGA...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGATCTCAATCTCTGCTGTaGCTATGCACGTTGAAGTCT +
Preference number: 4 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGSQSLL*LCTLKS
Trigger: AGACTTCAACGTGCATAGTCACAGCAGAGATTGAGA...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGTCTCAATCTCTGCTGTaGCTATGCACGTTGAAGTCT +
Preference number: 4 (lower is better)
Translates to: TCSTVACTQHTPGLADSRSQSLL*LCTLKS
Trigger: AGACTTCAACGTGCATAGTCACAGCAGAGATTGAGA...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGAGCTGATTCTGAGAACTaGTGGAGAATGCTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGADSEN*WRMLCH
Trigger: ATGGCAAAGCATTCTCCATCAGTTCTCAGAATCAGC...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGGCTGATTCTGAGAACTaGTGGAGAATGCTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: TCSTVACTQHTPGLADSRADSEN*WRMLCH
Trigger: ATGGCAAAGCATTCTCCATCAGTTCTCAGAATCAGC...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp CCACTCCTTATCATAACGATATTTTGCACTCCATCTCTGACCCGGAGGGTCCCGAGGCACCTCTGGTACTaGAGACTGTTGCTGATTCTG +
Preference number: 4 (lower is better)
Translates to: PLLIITIFCTPSLTRRVPRHLWY*RLLLIL
Trigger: CAGAATCAGCAACAGTCTTCAGTACCAGAGGTGCCT...CGGGACCCTCCGGGTCAGAGATGGAGTGCAAAATATCGTTATGATAAGGAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR TCA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGAGCTGGATTCTTCTCTaGCACTCCCCGATTTTTGTA +
Preference number: 4 (lower is better)
Translates to: TCSTVACTQHTPGLADSRSWILL*HSPIFV
Trigger: TACAAAAATCGGGGAGTGTCAGAGAAGAATCCAGCT...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGGCTCCAACTCCCCTGTaGAATCAAGCCAGCTTTCCA +
Preference number: 4 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRAPTPL*NQASFP
Trigger: TGGAAAGCTGGCTTGATTTCACAGGGGAGTTGGAGC...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGCCCAACAGCTTTGGATaGCAACAAACCAGTGATCTT +
Preference number: 4 (lower is better)
Translates to: TCSTVACTQHTPGLADSRPNSFG*QQTSDL
Trigger: AAGATCACTGGTTTGTTGGCATCCAAAGCTGTTGGG...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGACTCCTGGGCCCTCCGTaGCCTTTTTATCATTATAAA +
Preference number: 4 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGLLGPP*PFYHYK
Trigger: TTTATAATGATAAAAAGGGCACGGAGGGCCCAGGAG...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGACAAGCGTCAAATCCTTaGCTTGTATTAACTCTGGGG +
Preference number: 4 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGQASNP*LVLTLG
Trigger: CCCCAGAGTTAATACAAGCCAAGGATTTGACGCTTG...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGCAAGCGTCAAATCCTTaGCTTGTATTAACTCTGGGG +
Preference number: 4 (lower is better)
Translates to: TCSTVACTQHTPGLADSRQASNP*LVLTLG
Trigger: CCCCAGAGTTAATACAAGCCAAGGATTTGACGCTTG...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR CAA 72 bp CCTACACAGAGCACACCCAGTATGTGGCGCACAGGTTaGTATGGGTTAATGGCATTGCTTATGGCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: PTQSTPSMWRTG*YGLMALLMAGG
Trigger: TCCACCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGTGTGCTCTGTGTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAACTTTGAGGTTTAGGTaGAATCGCCTGCTCCAGGAC +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPTLRFR*NRLLQD
Trigger: GTCCTGGAGCAGGCGATTTCACCTAAACCTCAAAGT...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGTTTGCCATCAGTTGCTaGAGAGGAAGAAGAAAGCTT +
Preference number: 4 (lower is better)
Translates to: TCSTVACTQHTPGLADSRFAISC*RGRRKL
Trigger: AAGCTTTCTTCTTCCTCTTCAGCAACTGATGGCAAA...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGAGGCACCTCTGGTACTaGAGACTGTTGCTGATTCTG +
Preference number: 4 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRRHLWY*RLLLIL
Trigger: CAGAATCAGCAACAGTCTTCAGTACCAGAGGTGCCT...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGAGCATCGTCTTCATCCTaGGACTCCTCAAAATTAGTT +
Preference number: 4 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGASSSS*DSSKLV
Trigger: AACTAATTTTGAGGAGTCTCAGGATGAAGACGATGC...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGATGTTTTATTTTTCGCTaGAGCTGCAGCAGCTGCTTT +
Preference number: 4 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGCFIFR*SCSSCF
Trigger: AAAGCAGCTGCTGCAGCTGCAGCGAAAAATAAAACA...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGCTGGTGACTTCATTCTaGACATTTTCTATGTGCGTG +
Preference number: 4 (lower is better)
Translates to: TCSTVACTQHTPGLADSRLVTSF*TFSMCV
Trigger: CACGCACATAGAAAATGTGCAGAATGAAGTCACCAG...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGGTTACACGATCCAGCTaGGTCGATAGGACAACACCA +
Preference number: 4 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRVTRSS*VDRTTP
Trigger: TGGTGTTGTCCTATCGACCCAGCTGGATCGTGTAAC...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
CDS-3UTR CCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCATCACTTCCCATAGACTaGTTACACGATCCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPSLPID*LHDPAG
Trigger: CCCAGCTGGATCGTGTAACCAGTCTATGGGAAGTGA...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
CDS-3UTR CCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGAATGTTTCACTGGATGTaGGTAGTTCCTCCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGMFHWM*VVPPSS
Trigger: AGAAGAAGGAGGAACTACCCACATCCAGTGAAACAT...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGACATCACTCACTACTTTaGAGGTGGGATTTGCAAACA +
Preference number: 4 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGHHSLL*RWDLQT
Trigger: TGTTTGCAAATCCCACCTCCAAAGTAGTGAGTGATG...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCACGTAAATGTGCTTCGTaGAGCCAGAGAACTCCCAGA +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPRKCAS*SQRTPR
Trigger: TCTGGGAGTTCTCTGGCTCCACGAAGCACATTTACG...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCACACCAATCTCAAAAGTaGTTCCAGGACGATTTGGGG +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPHQSQK*FQDDLG
Trigger: CCCCAAATCGTCCTGGAATCACTTTTGAGATTGGTG...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGGGTCCATCCTGCTGGTaGCTTCATTCTGCACATTTT +
Preference number: 4 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRGPSCW*LHSAHF
Trigger: AAAATGTGCAGAATGAAGTCACCAGCAGGATGGACC...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGAAGAGTTGTTTTAAGTaGCGTTTAAGTTGGGGCAGT +
Preference number: 4 (lower is better)
Translates to: TCSTVACTQHTPGLADSRKSCFK*RLSWGS
Trigger: ACTGCCCCAACTTAAACGTCACTTAAAACAACTCTT...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCACTCCAGCGCTCAAAATaGACTAGCATCTTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPLQRSK*TSIFPS
Trigger: AGAAGGGAAGATGCTAGTCCATTTTGAGCGCTGGAG...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGAAGGTGGCTAAGCGCTaGGATCTTCTTCTTCTCTCA +
Preference number: 4 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRKVAKR*DLLLLS
Trigger: TGAGAGAAGAAGAAGATCCCAGCGCTTAGCCACCTT...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCACCTCCTTTTCTTCCCTaGGACATTCACCACCATGAT +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPPPFLP*DIHHHD
Trigger: ATCATGGTGGTGAATGTCCCAGGGAAGAAAAGGAGG...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGTTTTTGTACAGAAGATaGCTTTTATCTGGCACACGG +
Preference number: 4 (lower is better)
Translates to: TCSTVACTQHTPGLADSRFLYRR*LLSGTR
Trigger: CCGTGTGCCAGATAAAAGCCATCTTCTGTACAAAAA...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp CTCTCCACAAGGCCTCCTAAGGTTGTTCTTTACCTATGGGATGTTACAAGTCAAAAGATGCGAGTCTCCTaGGCCCTCCGTGCCCTTTTT +
Preference number: 4 (lower is better)
Translates to: LSTRPPKVVLYLWDVTSQKMRVS*ALRALF
Trigger: AAAAAGGGCACGGAGGGCCCAGGAGACTCGCATCTT...TTGACTTGTAACATCCCATAGGTAAAGAACAACCTTAGGAGGCCTTGTGGAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR CCA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCTTGCAAGGGGATCTaGTGGCTCCAACTCCCCTGT +
Preference number: 4 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVSCKGI*WLQLPC
Trigger: ACAGGGGAGTTGGAGCCACCAGATCCCCTTGCAAGA...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp TTGAGTTGGAAATCCTTCAGTTGGTCATCCAGACATGACCCTCTGGATCTTCAAAGATTTAGCTGCCACTaGAGATGCGAGTCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: LSWKSFSWSSRHDPLDLQRFSCH*RCESPG
Trigger: CCCAGGAGACTCGCATCTTCAGTGGCAGCTAAATCT...TTGAAGATCCAGAGGGTCATGTCTGGATGACCAACTGAAGGATTTCCAACTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR TCA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGCATTTTCTATGTGCGTaGGGAGATTTAGCTGCCACT +
Preference number: 4 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRHFLCA*GDLAAT
Trigger: AGTGGCAGCTAAATCTCCTCACGCACATAGAAAATG...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTCACCAGCTTAGTGGATaGTGGGATTTCACCTGCCCC +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLHQLSG*WDFTCP
Trigger: GGGGCAGGTGAAATCCCAGCATCCACTAAGCTGGTG...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
CDS-3UTR GCA 90 bp ACACTTTATTCCCTGAAGCTGGATTCTTCTCTGACACTCCCCGATTTTTGTACACACCAGCTTAGTGGATaGTGGGATTTCACCTGCCCC +
Preference number: 4 (lower is better)
Translates to: TLYSLKLDSSLTLPDFCTHQLSG*WDFTCP
Trigger: GGGGCAGGTGAAATCCCAGCATCCACTAAGCTGGTG...TGTACAAAAATCGGGGAGTGTCAGAGAAGAATCCAGCTTCAGGGAATAAAGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR GCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCACTGGAGCTGTTGCACTaGAGTCTTCTTTTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPLELLH*SLLFFQ
Trigger: CTGAAAGAAAAGAAGACTGCAGTGCAACAGCTCCAG...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGCTGGAGCTGTTGCACTaGAGTCTTCTTTTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRLELLH*SLLFFQ
Trigger: CTGAAAGAAAAGAAGACTGCAGTGCAACAGCTCCAG...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACCCTCCAGGAGCCCCATaGACACACTGTGCTGCCAGC +
Preference number: 4 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDPPGAP*THCAAS
Trigger: GCTGGCAGCACAGTGTGTGCATGGGGCTCCTGGAGG...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGTACAGAGCAAAGAGTTaGAATTTGTTGTACTTTGCC +
Preference number: 4 (lower is better)
Translates to: TCSTVACTQHTPGLADSRYRAKS*NLLYFA
Trigger: GGCAAAGTACAACAAATTGCAACTCTTTGCTCTGTA...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGAGGGATTCACAGGCTGTaGAGAACTAGTTTTATTTAT +
Preference number: 4 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGGIHRL*RTSFIY
Trigger: ATAAATAAAACTAGTTCTCCACAGCCTGTGAATCCC...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTCAGGCATGGGTAAGGTaGCTAAGCGCTGGGATCTTC +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLQAWVR*LSAGIF
Trigger: GAAGATCCCAGCGCTTAGCCACCTTACCCATGCCTG...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AACACTTTATTCCCTGAAGCTGGATTCTTCTCTGACACTCCCCGATTTTTGTACCAGGCATGGGTAAGGTaGCTAAGCGCTGGGATCTTC +
Preference number: 4 (lower is better)
Translates to: NTLFPEAGFFSDTPRFLYQAWVR*LSAGIF
Trigger: GAAGATCCCAGCGCTTAGCCACCTTACCCATGCCTG...GTACAAAAATCGGGGAGTGTCAGAGAAGAATCCAGCTTCAGGGAATAAAGTGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR CCA 90 bp TTCCAGAACGTCCACTTCTTTTTCTATGAGGTCCATCCTGCTGGTGACTTCATTGAGAGTCATCAGGCATaGGTAAGGTGGCTAAGCGCT +
Preference number: 4 (lower is better)
Translates to: FQNVHFFFYEVHPAGDFIESHQA*VRWLSA
Trigger: AGCGCTTAGCCACCTTACCCATGCCTGATGACTCTC...AATGAAGTCACCAGCAGGATGGACCTCATAGAAAAAGAAGTGGACGTTCTGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR CCA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCATGCAAGGGGATCTGGTaGCTCCAACTCCCCTGTGAA +
Preference number: 4 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSCKGIW*LQLPCE
Trigger: TTCACAGGGGAGTTGGAGCCACCAGATCCCCTTGCA...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTTCTTGCAAGGGGATCTaGTGGCTCCAACTCCCCTGT +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLSCKGI*WLQLPC
Trigger: ACAGGGGAGTTGGAGCCACCAGATCCCCTTGCAAGA...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGGTCCAAATGTTTCACTaGATGTGGGTAGTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRVQMFH*MWVVPP
Trigger: AGGAGGAACTACCCACATCCAGTGAAACATTTGGAC...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp TTGTACAGAAGATGGCTTTTATCTGGCACACGGAGCTCCCCATCTTCTTCAAAAACTTTGAGGTTTAGGTaGAATCGCCTGCTCCAGGAC +
Preference number: 4 (lower is better)
Translates to: LYRRWLLSGTRSSPSSSKTLRFR*NRLLQD
Trigger: GTCCTGGAGCAGGCGATTTCACCTAAACCTCAAAGT...TTTTGAAGAAGATGGGGAGCTCCGTGTGCCAGATAAAAGCCATCTTCTGTACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR TCA 90 bp GAAGATGCGAGTCTCCTGGGCCCTCCGTGCCCTTTTTATCATTATAAACAAACAGGGTTCTACTCCCTGTaGCTTCTGAACCACAACTTA +
Preference number: 4 (lower is better)
Translates to: EDASLLGPPCPFYHYKQTGFYSL*LLNHNL
Trigger: TAAGTTGTGGTTCAGAAGTCACAGGGAGTAGAACCC...TGTTTGTTTATAATGATAAAAAGGGCACGGAGGGCCCAGGAGACTCGCATCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR TCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAGCATCGTCTTCATCCTaGGACTCCTCAAAATTAGTT +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPASSSS*DSSKLV
Trigger: AACTAATTTTGAGGAGTCTCAGGATGAAGACGATGC...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGTGTTTTATTTTTCGCTaGAGCTGCAGCAGCTGCTTT +
Preference number: 4 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRCFIFR*SCSSCF
Trigger: AAAGCAGCTGCTGCAGCTGCAGCGAAAAATAAAACA...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATTTGGAGGTGGGATTTaGAAACAACGGCGTCTCCTC +
Preference number: 4 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVFGGGI*KQRRLL
Trigger: GAGGAGACGCCGTTGTTTGCAAATCCCACCTCCAAA...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAATCAACAGACAGAATTaGCCTCGGGTACTGATAAGT +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPINRQN*PRVLIS
Trigger: ACTTATCAGTACCCGAGGGCAATTCTGTCTGTTGAT...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTCCTCCAGGAGCCCCATaGACACACTGTGCTGCCAGC +
Preference number: 4 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPAPPGAP*THCAAS
Trigger: GCTGGCAGCACAGTGTGTGCATGGGGCTCCTGGAGG...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAATCATAACGATATTTTaGACTCCATCTCTGACCCGG +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPIITIF*TPSLTR
Trigger: CCGGGTCAGAGATGGAGTGCAAAATATCGTTATGAT...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGATCATAACGATATTTTaGACTCCATCTCTGACCCGG +
Preference number: 4 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRIITIF*TPSLTR
Trigger: CCGGGTCAGAGATGGAGTGCAAAATATCGTTATGAT...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACAAGTTGGGGCAGTCTTaGAAGGGGATCTGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDKLGQS*KGIWWL
Trigger: GAGCCACCAGATCCCCTTGCAAGACTGCCCCAACTT...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCACTACAAATGTTTCACTaGATGTGGGTAGTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPLQMFH*MWVVPP
Trigger: AGGAGGAACTACCCACATCCAGTGAAACATTTGTAG...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048188.10
ENSMUST00000229576.2
CDS-3UTR CCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATCAGGCATGGGTAAGGTaGCTAAGCGCTGGGATCTTC +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHQAWVR*LSAGIF
Trigger: GAAGATCCCAGCGCTTAGCCACCTTACCCATGCCTG...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCACATCACTCACTACTTTaGAGGTGGGATTTGCAAACA +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPHHSLL*RWDLQT
Trigger: TGTTTGCAAATCCCACCTCCAAAGTAGTGAGTGATG...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTCTGCAGCAGCTGCTTTaGCTAAAGCAATCCAGTCCT +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLLQQLL*LKQSSP
Trigger: AGGACTGGATTGCTTTAGTCAAAGCAGCTGCTGCAG...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTACTTCACACTGGATCATaGAGCCATTCTCCTCATCCA +
Preference number: 4 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVLHTGS*SHSPHP
Trigger: TGGATGAGGAGAATGGCTTCATGATCCAGTGTGAAG...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AGTACACTCAGAAGTCTTTCCTTGGGCTCTAGTTTAGAGAGAACAAAGACTAGGGCTTCAGCTACTGCCTaGTCTTGGTCTTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: STLRSLSLGSSLERTKTRASATA*SWSFLF
Trigger: GAAGAGGAAAGACCAAGATCAGGCAGTAGCTGAAGC...CCTAGTCTTTGTTCTCTCTAAACTAGAGCCCAAGGAAAGACTTCTGAGTGTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR TCA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCAGCTTCAGCTACTGCCTaGTCTTGGTCTTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSASATA*SWSFLF
Trigger: GAAGAGGAAAGACCAAGATCAGGCAGTAGCTGAAGC...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATGCTCCAACTCCCCTGTaGAATCAAGCCAGCTTTCCA +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHAPTPL*NQASFP
Trigger: TGGAAAGCTGGCTTGATTTCACAGGGGAGTTGGAGC...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACGCTCCAACTCCCCTGTaGAATCAAGCCAGCTTTCCA +
Preference number: 4 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDAPTPL*NQASFP
Trigger: TGGAAAGCTGGCTTGATTTCACAGGGGAGTTGGAGC...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGTCTTGTTTGTTAATGTaGTCTCTGGCTGTGGAAAGA +
Preference number: 4 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRSCLLM*SLAVER
Trigger: TCTTTCCACAGCCAGAGAGCACATTAACAAACAAGA...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp AGGATGGAAAAGCATGCACAGCTCAGTATGTACAGGTATTGTGGGTACGTGAACCCCAACAGCTTTGGATaGCAACAAACCAGTGATCTT +
Preference number: 4 (lower is better)
Translates to: RMEKHAQLSMYRYCGYVNPNSFG*QQTSDL
Trigger: AAGATCACTGGTTTGTTGGCATCCAAAGCTGTTGGG...GTTCACGTACCCACAATACCTGTACATACTGAGCTGTGCATGCTTTTCCATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR GCA 90 bp GAAGATGCGAGTCTCCTGGGCCCTCCGTGCCCTTTTTATCATTATAAACAAACACTGGAGCTGTTGCACTaGAGTCTTCTTTTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: EDASLLGPPCPFYHYKQTLELLH*SLLFFQ
Trigger: CTGAAAGAAAAGAAGACTGCAGTGCAACAGCTCCAG...TGTTTGTTTATAATGATAAAAAGGGCACGGAGGGCCCAGGAGACTCGCATCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR GCA 90 bp TTTGATAGCTGTGCTCGCTTGTTATGTAAGTTTCTTCCATTCTCAGGGCTGGTTTTTGGAGGTGGGATTTaGAAACAACGGCGTCTCCTC +
Preference number: 4 (lower is better)
Translates to: FDSCARLLCKFLPFSGLVFGGGI*KQRRLL
Trigger: GAGGAGACGCCGTTGTTTGCAAATCCCACCTCCAAA...AACCAGCCCTGAGAATGGAAGAAACTTACATAACAAGCGAGCACAGCTATCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR GCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTATGCACACACTGTGCTaGCAGCATAGGCACTCTTCA +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLMHTLC*QHRHSS
Trigger: TGAAGAGTGCCTATGCTGGCAGCACAGTGTGTGCAT...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCATGTTATTTTTCTCTCTaGTTCAGCTACTGCCTGATC +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPCYFSL*FSYCLI
Trigger: GATCAGGCAGTAGCTGAAGCAGAGAGAAAAATAACA...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AGTACACTCAGAAGTCTTTCCTTGGGCTCTAGTTTAGAGAGAACAAAGACTAGGGTTACACGATCCAGCTaGGTCGATAGGACAACACCA +
Preference number: 4 (lower is better)
Translates to: STLRSLSLGSSLERTKTRVTRSS*VDRTTP
Trigger: TGGTGTTGTCCTATCGACCCAGCTGGATCGTGTAAC...CCTAGTCTTTGTTCTCTCTAAACTAGAGCCCAAGGAAAGACTTCTGAGTGTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR CCA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATGTGCTCTCTGGCTGTaGAAAGACGATCTTTGGAAC +
Preference number: 4 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVCALWL*KDDLWN
Trigger: GTTCCAAAGATCGTCTTTCCACAGCCAGAGAGCACA...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTAAAGGTGGCTAAGCGCTaGGATCTTCTTCTTCTCTCA +
Preference number: 4 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVKVAKR*DLLLLS
Trigger: TGAGAGAAGAAGAAGATCCCAGCGCTTAGCCACCTT...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp TTGTACAGAAGATGGCTTTTATCTGGCACACGGAGCTCCCCATCTTCTTCAAAAAAGGTGGCTAAGCGCTaGGATCTTCTTCTTCTCTCA +
Preference number: 4 (lower is better)
Translates to: LYRRWLLSGTRSSPSSSKKVAKR*DLLLLS
Trigger: TGAGAGAAGAAGAAGATCCCAGCGCTTAGCCACCTT...TTTTGAAGAAGATGGGGAGCTCCGTGTGCCAGATAAAAGCCATCTTCTGTACAA
46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR CCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATGAGAGTCATCAGGCATaGGTAAGGTGGCTAAGCGCT +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHESHQA*VRWLSA
Trigger: AGCGCTTAGCCACCTTACCCATGCCTGATGACTCTC...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTCGTAAATGTGCTTCGTaGAGCCAGAGAACTCCCAGA +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLRKCAS*SQRTPR
Trigger: TCTGGGAGTTCTCTGGCTCCACGAAGCACATTTACG...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR CAA 72 bp AGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATaGCTTATGGCAGGTGGAAGGATTCCTGCAATATTC +
Preference number: 4 (lower is better)
Translates to: SMWRTGLYGLMA*LMAGGRIPAIF
Trigger: GAATATTGCAGGAATCCTTCCACCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR CAA 72 bp TTCCATTATTCAACCACTCCTTATCATAACGATATTTaGCACTCCATCTCTGACCCGGAGGGTCCCGACAGA +
Preference number: 4 (lower is better)
Translates to: FHYSTTPYHNDI*HSISDPEGPDR
Trigger: TCTGTCGGGACCCTCCGGGTCAGAGATGGAGTGCAAAATATCGTTATGATAAGGAGTGGTTGAATAATGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR TCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTCACCAATCTCAAAAGTaGTTCCAGGACGATTTGGGG +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLHQSQK*FQDDLG
Trigger: CCCCAAATCGTCCTGGAATCACTTTTGAGATTGGTG...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp ATGGAAAAGCATGCACAGCTCAGTATGTACAGGTATTGTGGGTACGTGAACATACACCAATCTCAAAAGTaGTTCCAGGACGATTTGGGG +
Preference number: 4 (lower is better)
Translates to: MEKHAQLSMYRYCGYVNIHQSQK*FQDDLG
Trigger: CCCCAAATCGTCCTGGAATCACTTTTGAGATTGGTG...TATGTTCACGTACCCACAATACCTGTACATACTGAGCTGTGCATGCTTTTCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR TCA 90 bp ATCATGAAGCCATTCTCCTCATCCAGTTCACAGATACAGCGTACAATCTCATTACTGCAGCAGCTGCTTTaGCTAAAGCAATCCAGTCCT +
Preference number: 4 (lower is better)
Translates to: IMKPFSSSSSQIQRTISLLQQLL*LKQSSP
Trigger: AGGACTGGATTGCTTTAGTCAAAGCAGCTGCTGCAG...TAATGAGATTGTACGCTGTATCTGTGAACTGGATGAGGAGAATGGCTTCATGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR TCA 90 bp ACACTTTATTCCCTGAAGCTGGATTCTTCTCTGACACTCCCCGATTTTTGTACAAACAGTGCAGGTTTCTaGGTGTTGGCAGAACTGCTA +
Preference number: 4 (lower is better)
Translates to: TLYSLKLDSSLTLPDFCTNSAGF*VLAELL
Trigger: TAGCAGTTCTGCCAACACTCAGAAACCTGCACTGTT...TGTACAAAAATCGGGGAGTGTCAGAGAAGAATCCAGCTTCAGGGAATAAAGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR TCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTAACAGTGCAGGTTTCTaGGTGTTGGCAGAACTGCTA +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLNSAGF*VLAELL
Trigger: TAGCAGTTCTGCCAACACTCAGAAACCTGCACTGTT...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp TTCCAGAACGTCCACTTCTTTTTCTATGAGGTCCATCCTGCTGGTGACTTCATTGCTGATTCTGAGAACTaGTGGAGAATGCTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: FQNVHFFFYEVHPAGDFIADSEN*WRMLCH
Trigger: ATGGCAAAGCATTCTCCATCAGTTCTCAGAATCAGC...AATGAAGTCACCAGCAGGATGGACCTCATAGAAAAAGAAGTGGACGTTCTGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR TCA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCAGGGTTCTACTCCCTGTaGCTTCTGAACCACAACTTA +
Preference number: 4 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSGFYSL*LLNHNL
Trigger: TAAGTTGTGGTTCAGAAGTCACAGGGAGTAGAACCC...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AGTACACTCAGAAGTCTTTCCTTGGGCTCTAGTTTAGAGAGAACAAAGACTAGGCTTCACACTGGATCATaGAGCCATTCTCCTCATCCA +
Preference number: 4 (lower is better)
Translates to: STLRSLSLGSSLERTKTRLHTGS*SHSPHP
Trigger: TGGATGAGGAGAATGGCTTCATGATCCAGTGTGAAG...CCTAGTCTTTGTTCTCTCTAAACTAGAGCCCAAGGAAAGACTTCTGAGTGTACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR GCA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCATCCTTCTTTGTTAATTaGTTCAATCTTGGCAGGGTA +
Preference number: 4 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPSFFVN*FNLGRV
Trigger: TACCCTGCCAAGATTGAAGCAATTAACAAAGAAGGA...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp TCATTAGTACATCAAATTGTGGCTGTAGGCCTGTTATCAATATGTCATAACTGGCACCAGCTTAGTGGATaGTGGGATTTCACCTGCCCC +
Preference number: 4 (lower is better)
Translates to: SLVHQIVAVGLLSICHNWHQLSG*WDFTCP
Trigger: GGGGCAGGTGAAATCCCAGCATCCACTAAGCTGGTG...CCAGTTATGACATATTGATAACAGGCCTACAGCCACAATTTGATGTACTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR GCA 90 bp TTGTACAGAAGATGGCTTTTATCTGGCACACGGAGCTCCCCATCTTCTTCAAAACCCAACAGCTTTGGATaGCAACAAACCAGTGATCTT +
Preference number: 4 (lower is better)
Translates to: LYRRWLLSGTRSSPSSSKPNSFG*QQTSDL
Trigger: AAGATCACTGGTTTGTTGGCATCCAAAGCTGTTGGG...TTTTGAAGAAGATGGGGAGCTCCGTGTGCCAGATAAAAGCCATCTTCTGTACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR GCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACTTTGGAGGTGGGATTTaGAAACAACGGCGTCTCCTC +
Preference number: 4 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDFGGGI*KQRRLL
Trigger: GAGGAGACGCCGTTGTTTGCAAATCCCACCTCCAAA...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTACTCCTGGGCCCTCCGTaGCCTTTTTATCATTATAAA +
Preference number: 4 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVLLGPP*PFYHYK
Trigger: TTTATAATGATAAAAAGGGCACGGAGGGCCCAGGAG...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACGTTACACGATCCAGCTaGGTCGATAGGACAACACCA +
Preference number: 4 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDVTRSS*VDRTTP
Trigger: TGGTGTTGTCCTATCGACCCAGCTGGATCGTGTAAC...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
CDS-3UTR CCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACTCACTTCCCATAGACTaGTTACACGATCCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDSLPID*LHDPAG
Trigger: CCCAGCTGGATCGTGTAACCAGTCTATGGGAAGTGA...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
CDS-3UTR CCA 90 bp AGGATGGAAAAGCATGCACAGCTCAGTATGTACAGGTATTGTGGGTACGTGAACATGTTTCACTGGATGTaGGTAGTTCCTCCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: RMEKHAQLSMYRYCGYVNMFHWM*VVPPSS
Trigger: AGAAGAAGGAGGAACTACCCACATCCAGTGAAACAT...GTTCACGTACCCACAATACCTGTACATACTGAGCTGTGCATGCTTTTCCATCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR CCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTCCTCCTTTTCTTCCCTaGGACATTCACCACCATGAT +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLPPFLP*DIHHHD
Trigger: ATCATGGTGGTGAATGTCCCAGGGAAGAAAAGGAGG...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCACCTCCTTTTCTTCCCTaGGACATTCACCACCATGAT +
Preference number: 4 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSPPFLP*DIHHHD
Trigger: ATCATGGTGGTGAATGTCCCAGGGAAGAAAAGGAGG...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTGAAGCAGGCTCTCTGTaGAAGAGTCATCCAGGAATT +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLEAGSL*KSHPGI
Trigger: AATTCCTGGATGACTCTTCCACAGAGAGCCTGCTTC...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTAGGCACTCTTCACACTaGATCATGAAGCCATTCTCC +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLRHSSH*IMKPFS
Trigger: GGAGAATGGCTTCATGATCCAGTGTGAAGAGTGCCT...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATAAGATGGCTTTTATCTaGCACACGGAGCTCCCCATC +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHKMAFI*HTELPI
Trigger: GATGGGGAGCTCCGTGTGCCAGATAAAAGCCATCTT...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp ATTGTGGAGACAATGGCTTTCATTTCAGTCTATGGAGAACATAAGCTAATACAGTACCTGCTCCAGGACTaGAGCTGTTGCACTGCAGTC +
Preference number: 4 (lower is better)
Translates to: IVETMAFISVYGEHKLIQYLLQD*SCCTAV
Trigger: GACTGCAGTGCAACAGCTCCAGTCCTGGAGCAGGTA...CTGTATTAGCTTATGTTCTCCATAGACTGAAATGAAAGCCATTGTCTCCACAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR CAA 72 bp CCTCTTCCGTTCCCTCACTTCCCTCCTGCTACTGAGTaGTTCGATTTTGTTTCTAATGAACTAAGTACACTC +
Preference number: 4 (lower is better)
Translates to: PLPFPHFPPATE*FDFVSNELSTL
Trigger: GAGTGTACTTAGTTCATTAGAAACAAAATCGAACAACTCAGTAGCAGGAGGGAAGTGAGGGAACGGAAGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR CAA 72 bp GAGAGACTGGCAGTCCTGACTAAAGCTTTGTGGCTTTaGATAGCTGTGCTCGCTTGTTATGTAAGTTTCTTC +
Preference number: 4 (lower is better)
Translates to: ERLAVLTKALWL*IAVLACYVSFF
Trigger: GAAGAAACTTACATAACAAGCGAGCACAGCTATCAAAAGCCACAAAGCTTTAGTCAGGACTGCCAGTCTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR TCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACCACCAATCTCAAAAGTaGTTCCAGGACGATTTGGGG +
Preference number: 4 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDHQSQK*FQDDLG
Trigger: CCCCAAATCGTCCTGGAATCACTTTTGAGATTGGTG...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATAACAGTGCAGGTTTCTaGGTGTTGGCAGAACTGCTA +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHNSAGF*VLAELL
Trigger: TAGCAGTTCTGCCAACACTCAGAAACCTGCACTGTT...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp TTGAGTTGGAAATCCTTCAGTTGGTCATCCAGACATGACCCTCTGGATCTTCAATTTGCCATCAGTTGCTaGAGAGGAAGAAGAAAGCTT +
Preference number: 4 (lower is better)
Translates to: LSWKSFSWSSRHDPLDLQFAISC*RGRRKL
Trigger: AAGCTTTCTTCTTCCTCTTCAGCAACTGATGGCAAA...TTGAAGATCCAGAGGGTCATGTCTGGATGACCAACTGAAGGATTTCCAACTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR TCA 90 bp TTCCAGAACGTCCACTTCTTTTTCTATGAGGTCCATCCTGCTGGTGACTTCATTTTTGCCATCAGTTGCTaGAGAGGAAGAAGAAAGCTT +
Preference number: 4 (lower is better)
Translates to: FQNVHFFFYEVHPAGDFIFAISC*RGRRKL
Trigger: AAGCTTTCTTCTTCCTCTTCAGCAACTGATGGCAAA...AATGAAGTCACCAGCAGGATGGACCTCATAGAAAAAGAAGTGGACGTTCTGGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR TCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATCTTCACACTGGATCATaGAGCCATTCTCCTCATCCA +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHLHTGS*SHSPHP
Trigger: TGGATGAGGAGAATGGCTTCATGATCCAGTGTGAAG...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTAGCTGGATTCTTCTCTaGCACTCCCCGATTTTTGTA +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLSWILL*HSPIFV
Trigger: TACAAAAATCGGGGAGTGTCAGAGAAGAATCCAGCT...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTCATTTTCTATGTGCGTaGGGAGATTTAGCTGCCACT +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLHFLCA*GDLAAT
Trigger: AGTGGCAGCTAAATCTCCTCACGCACATAGAAAATG...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATGGTCCATCCTGCTGGTaGCTTCATTCTGCACATTTT +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHGPSCW*LHSAHF
Trigger: AAAATGTGCAGAATGAAGTCACCAGCAGGATGGACC...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCAAAAAATCCCAATTCCTaGCACCAAATGCAGTGGAGG +
Preference number: 4 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSKNPNS*HQMQWR
Trigger: CCTCCACTGCATTTGGTGTCAGGAATTGGGATTTTT...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR GCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTCACCAGCTTAGTGGATaGTGGGATTTCACCTGCCCC +
Preference number: 4 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTHQLSG*WDFTCP
Trigger: GGGGCAGGTGAAATCCCAGCATCCACTAAGCTGGTG...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
CDS-3UTR GCA 90 bp TTGTACAGAAGATGGCTTTTATCTGGCACACGGAGCTCCCCATCTTCTTCAAAATGTTTTATTTTTCGCTaGAGCTGCAGCAGCTGCTTT +
Preference number: 4 (lower is better)
Translates to: LYRRWLLSGTRSSPSSSKCFIFR*SCSSCF
Trigger: AAAGCAGCTGCTGCAGCTGCAGCGAAAAATAAAACA...TTTTGAAGAAGATGGGGAGCTCCGTGTGCCAGATAAAAGCCATCTTCTGTACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR GCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTCTCCTGGGCCCTCCGTaGCCTTTTTATCATTATAAA +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLLLGPP*PFYHYK
Trigger: TTTATAATGATAAAAAGGGCACGGAGGGCCCAGGAG...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTACTGGTGACTTCATTCTaGACATTTTCTATGTGCGTG +
Preference number: 4 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVLVTSF*TFSMCV
Trigger: CACGCACATAGAAAATGTGCAGAATGAAGTCACCAG...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp CTGTTTGTATTTTACAAGTCTCTACATTCTGTTCAACCCATTGCAAAGTGTATGAAGTTGGGGCAGTCTTaGAAGGGGATCTGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: LFVFYKSLHSVQPIAKCMKLGQS*KGIWWL
Trigger: GAGCCACCAGATCCCCTTGCAAGACTGCCCCAACTT...CATACACTTTGCAATGGGTTGAACAGAATGTAGAGACTTGTAAAATACAAACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR CCA 90 bp CTAATACAGTCCATAGCTTATGTGCATATTCGGGAGAAGGCAGAGTTAAAAGTGCTCCAGCGCTCAAAATaGACTAGCATCTTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: LIQSIAYVHIREKAELKVLQRSK*TSIFPS
Trigger: AGAAGGGAAGATGCTAGTCCATTTTGAGCGCTGGAG...CACTTTTAACTCTGCCTTCTCCCGAATATGCACATAAGCTATGGACTGTATTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR CCA 90 bp TTCCAGAACGTCCACTTCTTTTTCTATGAGGTCCATCCTGCTGGTGACTTCATTATGTTTCACTGGATGTaGGTAGTTCCTCCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: FQNVHFFFYEVHPAGDFIMFHWM*VVPPSS
Trigger: AGAAGAAGGAGGAACTACCCACATCCAGTGAAACAT...AATGAAGTCACCAGCAGGATGGACCTCATAGAAAAAGAAGTGGACGTTCTGGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR CCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATTGTGCTCTCTGGCTGTaGAAAGACGATCTTTGGAAC +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHCALWL*KDDLWN
Trigger: GTTCCAAAGATCGTCTTTCCACAGCCAGAGAGCACA...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATAAGGTGGCTAAGCGCTaGGATCTTCTTCTTCTCTCA +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHKVAKR*DLLLLS
Trigger: TGAGAGAAGAAGAAGATCCCAGCGCTTAGCCACCTT...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTCAGGCATGGGTAAGGTaGCTAAGCGCTGGGATCTTC +
Preference number: 4 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPAQAWVR*LSAGIF
Trigger: GAAGATCCCAGCGCTTAGCCACCTTACCCATGCCTG...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTACATCACTCACTACTTTaGAGGTGGGATTTGCAAACA +
Preference number: 4 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVHHSLL*RWDLQT
Trigger: TGTTTGCAAATCCCACCTCCAAAGTAGTGAGTGATG...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACGAAGCAGGCTCTCTGTaGAAGAGTCATCCAGGAATT +
Preference number: 4 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDEAGSL*KSHPGI
Trigger: AATTCCTGGATGACTCTTCCACAGAGAGCCTGCTTC...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTAAGATGCGAGTCTCCTaGGCCCTCCGTGCCCTTTTT +
Preference number: 4 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPAKMRVS*ALRALF
Trigger: AAAAAGGGCACGGAGGGCCCAGGAGACTCGCATCTT...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTTGCAAGGGGATCTGGTaGCTCCAACTCCCCTGTGAA +
Preference number: 4 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPACKGIW*LQLPCE
Trigger: TTCACAGGGGAGTTGGAGCCACCAGATCCCCTTGCA...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp CTGTTTGTATTTTACAAGTCTCTACATTCTGTTCAACCCATTGCAAAGTGTATGTGCAAGGGGATCTGGTaGCTCCAACTCCCCTGTGAA +
Preference number: 4 (lower is better)
Translates to: LFVFYKSLHSVQPIAKCMCKGIW*LQLPCE
Trigger: TTCACAGGGGAGTTGGAGCCACCAGATCCCCTTGCA...CATACACTTTGCAATGGGTTGAACAGAATGTAGAGACTTGTAAAATACAAACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR CAA 72 bp CAAATCCTCTTTCCAGCAGTATCAACATTTGGCACATaGGGCCCTTCTGCAAGCCACTTTACTTTTAAAGAG +
Preference number: 4 (lower is better)
Translates to: QILFPAVSTFGT*GPSASHFTFKE
Trigger: CTCTTTAAAAGTAAAGTGGCTTGCAGAAGGGCCCAATGTGCCAAATGTTGATACTGCTGGAAAGAGGATTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
3UTR CAA 72 bp GCAATATTCAAATCCTCTTTCCAGCAGTATCAACATTaGGCACATTGGGCCCTTCTGCAAGCCACTTTACTT +
Preference number: 4 (lower is better)
Translates to: AIFKSSFQQYQH*AHWALLQATLL
Trigger: AAGTAAAGTGGCTTGCAGAAGGGCCCAATGTGCCAAATGTTGATACTGCTGGAAAGAGGATTTGAATATTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp ATTAATGGAGGTATCAAAACAATGCACTGCTTTCAAATCAGGCCTGAATCAACACTGCAGCAGCTGCTTTaGCTAAAGCAATCCAGTCCT +
Preference number: 4 (lower is better)
Translates to: INGGIKTMHCFQIRPESTLQQLL*LKQSSP
Trigger: AGGACTGGATTGCTTTAGTCAAAGCAGCTGCTGCAG...TGTTGATTCAGGCCTGATTTGAAAGCAGTGCATTGTTTTGATACCTCCATTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR TCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACCTGCAGCAGCTGCTTTaGCTAAAGCAATCCAGTCCT +
Preference number: 4 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDLQQLL*LKQSSP
Trigger: AGGACTGGATTGCTTTAGTCAAAGCAGCTGCTGCAG...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACTCTCAATCTCTGCTGTaGCTATGCACGTTGAAGTCT +
Preference number: 4 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDSQSLL*LCTLKS
Trigger: AGACTTCAACGTGCATAGTCACAGCAGAGATTGAGA...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACGCTGATTCTGAGAACTaGTGGAGAATGCTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDADSEN*WRMLCH
Trigger: ATGGCAAAGCATTCTCCATCAGTTCTCAGAATCAGC...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACAGGCACCTCTGGTACTaGAGACTGTTGCTGATTCTG +
Preference number: 4 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDRHLWY*RLLLIL
Trigger: CAGAATCAGCAACAGTCTTCAGTACCAGAGGTGCCT...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTGAGTTAGCTCTGTCCTaGGGTGTTATTTTTCTCTCT +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLELALS*GVIFLS
Trigger: AGAGAGAAAAATAACACCTCAGGACAGAGCTAACTC...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTAGATTTAGCTGCCACTaGAGATGCGAGTCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPARFSCH*RCESPG
Trigger: CCCAGGAGACTCGCATCTTCAGTGGCAGCTAAATCT...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp ATGGAAAAGCATGCACAGCTCAGTATGTACAGGTATTGTGGGTACGTGAACATATGTTTTATTTTTCGCTaGAGCTGCAGCAGCTGCTTT +
Preference number: 4 (lower is better)
Translates to: MEKHAQLSMYRYCGYVNICFIFR*SCSSCF
Trigger: AAAGCAGCTGCTGCAGCTGCAGCGAAAAATAAAACA...TATGTTCACGTACCCACAATACCTGTACATACTGAGCTGTGCATGCTTTTCCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR GCA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCTTGTTTGTTAATGTaGTCTCTGGCTGTGGAAAGA +
Preference number: 4 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVSCLLM*SLAVER
Trigger: TCTTTCCACAGCCAGAGAGCACATTAACAAACAAGA...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATCCCAACAGCTTTGGATaGCAACAAACCAGTGATCTT +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHPNSFG*QQTSDL
Trigger: AAGATCACTGGTTTGTTGGCATCCAAAGCTGTTGGG...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp AGTACACTCAGAAGTCTTTCCTTGGGCTCTAGTTTAGAGAGAACAAAGACTAGGATCAACAGACAGAATTaGCCTCGGGTACTGATAAGT +
Preference number: 4 (lower is better)
Translates to: STLRSLSLGSSLERTKTRINRQN*PRVLIS
Trigger: ACTTATCAGTACCCGAGGGCAATTCTGTCTGTTGAT...CCTAGTCTTTGTTCTCTCTAAACTAGAGCCCAAGGAAAGACTTCTGAGTGTACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR GCA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCAATCATAACGATATTTTaGACTCCATCTCTGACCCGG +
Preference number: 4 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSIITIF*TPSLTR
Trigger: CCGGGTCAGAGATGGAGTGCAAAATATCGTTATGAT...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp TCATTAGTACATCAAATTGTGGCTGTAGGCCTGTTATCAATATGTCATAACTGGGTTACACGATCCAGCTaGGTCGATAGGACAACACCA +
Preference number: 4 (lower is better)
Translates to: SLVHQIVAVGLLSICHNWVTRSS*VDRTTP
Trigger: TGGTGTTGTCCTATCGACCCAGCTGGATCGTGTAAC...CCAGTTATGACATATTGATAACAGGCCTACAGCCACAATTTGATGTACTAATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR CCA 90 bp ATTAATGGAGGTATCAAAACAATGCACTGCTTTCAAATCAGGCCTGAATCAACATCACTTCCCATAGACTaGTTACACGATCCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: INGGIKTMHCFQIRPESTSLPID*LHDPAG
Trigger: CCCAGCTGGATCGTGTAACCAGTCTATGGGAAGTGA...TGTTGATTCAGGCCTGATTTGAAAGCAGTGCATTGTTTTGATACCTCCATTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR CCA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCAATGTTTCACTGGATGTaGGTAGTTCCTCCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSMFHWM*VVPPSS
Trigger: AGAAGAAGGAGGAACTACCCACATCCAGTGAAACAT...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTCTACAAATGTTTCACTaGATGTGGGTAGTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLLQMFH*MWVVPP
Trigger: AGGAGGAACTACCCACATCCAGTGAAACATTTGTAG...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048188.10
CDS-3UTR CCA 90 bp CTGACTAAAGCTTTGTGGCTTTTGATAGCTGTGCTCGCTTGTTATGTAAGTTTCCAAGCGTCAAATCCTTaGCTTGTATTAACTCTGGGG +
Preference number: 4 (lower is better)
Translates to: LTKALWLLIAVLACYVSFQASNP*LVLTLG
Trigger: CCCCAGAGTTAATACAAGCCAAGGATTTGACGCTTG...GAAACTTACATAACAAGCGAGCACAGCTATCAAAAGCCACAAAGCTTTAGTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR CCA 90 bp CTGTTTGTATTTTACAAGTCTCTACATTCTGTTCAACCCATTGCAAAGTGTATGGAGAGTCATCAGGCATaGGTAAGGTGGCTAAGCGCT +
Preference number: 4 (lower is better)
Translates to: LFVFYKSLHSVQPIAKCMESHQA*VRWLSA
Trigger: AGCGCTTAGCCACCTTACCCATGCCTGATGACTCTC...CATACACTTTGCAATGGGTTGAACAGAATGTAGAGACTTGTAAAATACAAACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR CCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTGTTGAATCAAAGTCTTaGTTGTACTCATCCCCACTC +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLVESKS*LYSSPL
Trigger: GAGTGGGGATGAGTACAACCAAGACTTTGATTCAAC...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCACTGACTAAAGCTTTGTaGCTTTTGATAGCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSLTKAL*LLIAVL
Trigger: GAGCACAGCTATCAAAAGCCACAAAGCTTTAGTCAG...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACAAGATGGCTTTTATCTaGCACACGGAGCTCCCCATC +
Preference number: 4 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDKMAFI*HTELPI
Trigger: GATGGGGAGCTCCGTGTGCCAGATAAAAGCCATCTT...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTACTTTGAGGTTTAGGTaGAATCGCCTGCTCCAGGAC +
Preference number: 4 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPATLRFR*NRLLQD
Trigger: GTCCTGGAGCAGGCGATTTCACCTAAACCTCAAAGT...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACTTTGCCATCAGTTGCTaGAGAGGAAGAAGAAAGCTT +
Preference number: 4 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDFAISC*RGRRKL
Trigger: AAGCTTTCTTCTTCCTCTTCAGCAACTGATGGCAAA...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTAGGCACCTCTGGTACTaGAGACTGTTGCTGATTCTG +
Preference number: 4 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPARHLWY*RLLLIL
Trigger: CAGAATCAGCAACAGTCTTCAGTACCAGAGGTGCCT...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACGGGTTCTACTCCCTGTaGCTTCTGAACCACAACTTA +
Preference number: 4 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDGFYSL*LLNHNL
Trigger: TAAGTTGTGGTTCAGAAGTCACAGGGAGTAGAACCC...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTGCTTCAGCTACTGCCTaGTCTTGGTCTTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPAASATA*SWSFLF
Trigger: GAAGAGGAAAGACCAAGATCAGGCAGTAGCTGAAGC...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATGAGTTAGCTCTGTCCTaGGGTGTTATTTTTCTCTCT +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHELALS*GVIFLS
Trigger: AGAGAGAAAAATAACACCTCAGGACAGAGCTAACTC...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AGTACACTCAGAAGTCTTTCCTTGGGCTCTAGTTTAGAGAGAACAAAGACTAGGAAGAGTTGTTTTAAGTaGCGTTTAAGTTGGGGCAGT +
Preference number: 4 (lower is better)
Translates to: STLRSLSLGSSLERTKTRKSCFK*RLSWGS
Trigger: ACTGCCCCAACTTAAACGTCACTTAAAACAACTCTT...CCTAGTCTTTGTTCTCTCTAAACTAGAGCCCAAGGAAAGACTTCTGAGTGTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR GCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATTGTTTTATTTTTCGCTaGAGCTGCAGCAGCTGCTTT +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHCFIFR*SCSSCF
Trigger: AAAGCAGCTGCTGCAGCTGCAGCGAAAAATAAAACA...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTTTTGGAGGTGGGATTTaGAAACAACGGCGTCTCCTC +
Preference number: 4 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTFGGGI*KQRRLL
Trigger: GAGGAGACGCCGTTGTTTGCAAATCCCACCTCCAAA...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATATCAACAGACAGAATTaGCCTCGGGTACTGATAAGT +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHINRQN*PRVLIS
Trigger: ACTTATCAGTACCCGAGGGCAATTCTGTCTGTTGAT...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTATGCACACACTGTGCTaGCAGCATAGGCACTCTTCA +
Preference number: 4 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTMHTLC*QHRHSS
Trigger: TGAAGAGTGCCTATGCTGGCAGCACAGTGTGTGCAT...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTCAGCTTAGTGGATGCTaGGATTTCACCTGCCCCTTA +
Preference number: 4 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTQLSGC*DFTCPL
Trigger: TAAGGGGCAGGTGAAATCCCAGCATCCACTAAGCTG...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
CDS-3UTR CCA 90 bp CATCCAGGATATATGTCTGAGTGTATGCATAAACCTTTCCATGCATATTTAGAATCACTTCCCATAGACTaGTTACACGATCCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: HPGYMSECMHKPFHAYLESLPID*LHDPAG
Trigger: CCCAGCTGGATCGTGTAACCAGTCTATGGGAAGTGA...TTCTAAATATGCATGGAAAGGTTTATGCATACACTCAGACATATATCCTGGATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR CCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATATGTTTCACTGGATGTaGGTAGTTCCTCCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHMFHWM*VVPPSS
Trigger: AGAAGAAGGAGGAACTACCCACATCCAGTGAAACAT...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp ATTGTGGAGACAATGGCTTTCATTTCAGTCTATGGAGAACATAAGCTAATACAGTGTGCTCTCTGGCTGTaGAAAGACGATCTTTGGAAC +
Preference number: 4 (lower is better)
Translates to: IVETMAFISVYGEHKLIQCALWL*KDDLWN
Trigger: GTTCCAAAGATCGTCTTTCCACAGCCAGAGAGCACA...CTGTATTAGCTTATGTTCTCCATAGACTGAAATGAAAGCCATTGTCTCCACAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR CCA 90 bp TTCCAGAACGTCCACTTCTTTTTCTATGAGGTCCATCCTGCTGGTGACTTCATTGGGATTCACAGGCTGTaGAGAACTAGTTTTATTTAT +
Preference number: 4 (lower is better)
Translates to: FQNVHFFFYEVHPAGDFIGIHRL*RTSFIY
Trigger: ATAAATAAAACTAGTTCTCCACAGCCTGTGAATCCC...AATGAAGTCACCAGCAGGATGGACCTCATAGAAAAAGAAGTGGACGTTCTGGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR CCA 90 bp CTGTTTGTATTTTACAAGTCTCTACATTCTGTTCAACCCATTGCAAAGTGTATGCGTAAATGTGCTTCGTaGAGCCAGAGAACTCCCAGA +
Preference number: 4 (lower is better)
Translates to: LFVFYKSLHSVQPIAKCMRKCAS*SQRTPR
Trigger: TCTGGGAGTTCTCTGGCTCCACGAAGCACATTTACG...CATACACTTTGCAATGGGTTGAACAGAATGTAGAGACTTGTAAAATACAAACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR CCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACGAAGCAGGCTCTCTGTaGAAGAGTCATCCAGGAATT +
Preference number: 4 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDEAGSL*KSHPGI
Trigger: AATTCCTGGATGACTCTTCCACAGAGAGCCTGCTTC...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCATTTTTGTACAGAAGATaGCTTTTATCTGGCACACGG +
Preference number: 4 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSFLYRR*LLSGTR
Trigger: CCGTGTGCCAGATAAAAGCCATCTTCTGTACAAAAA...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTCACCAATCTCAAAAGTaGTTCCAGGACGATTTGGGG +
Preference number: 4 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPAHQSQK*FQDDLG
Trigger: CCCCAAATCGTCCTGGAATCACTTTTGAGATTGGTG...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACTCTCAATCTCTGCTGTaGCTATGCACGTTGAAGTCT +
Preference number: 4 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDSQSLL*LCTLKS
Trigger: AGACTTCAACGTGCATAGTCACAGCAGAGATTGAGA...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp ATTAATGGAGGTATCAAAACAATGCACTGCTTTCAAATCAGGCCTGAATCAACATCTCAATCTCTGCTGTaGCTATGCACGTTGAAGTCT +
Preference number: 4 (lower is better)
Translates to: INGGIKTMHCFQIRPESTSQSLL*LCTLKS
Trigger: AGACTTCAACGTGCATAGTCACAGCAGAGATTGAGA...TGTTGATTCAGGCCTGATTTGAAAGCAGTGCATTGTTTTGATACCTCCATTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR TCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTAACAGTGCAGGTTTCTaGGTGTTGGCAGAACTGCTA +
Preference number: 4 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTNSAGF*VLAELL
Trigger: TAGCAGTTCTGCCAACACTCAGAAACCTGCACTGTT...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTGGTCCATCCTGCTGGTaGCTTCATTCTGCACATTTT +
Preference number: 4 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPAGPSCW*LHSAHF
Trigger: AAAATGTGCAGAATGAAGTCACCAGCAGGATGGACC...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACAAGAGTTGTTTTAAGTaGCGTTTAAGTTGGGGCAGT +
Preference number: 4 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDKSCFK*RLSWGS
Trigger: ACTGCCCCAACTTAAACGTCACTTAAAACAACTCTT...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCATCCTTCTTTGTTAATTaGTTCAATCTTGGCAGGGTA +
Preference number: 4 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSSFFVN*FNLGRV
Trigger: TACCCTGCCAAGATTGAAGCAATTAACAAAGAAGGA...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTTCCTTCTTTGTTAATTaGTTCAATCTTGGCAGGGTA +
Preference number: 4 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLSFFVN*FNLGRV
Trigger: TACCCTGCCAAGATTGAAGCAATTAACAAAGAAGGA...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp CTGACTAAAGCTTTGTGGCTTTTGATAGCTGTGCTCGCTTGTTATGTAAGTTTCTCTTGTTTGTTAATGTaGTCTCTGGCTGTGGAAAGA +
Preference number: 4 (lower is better)
Translates to: LTKALWLLIAVLACYVSFSCLLM*SLAVER
Trigger: TCTTTCCACAGCCAGAGAGCACATTAACAAACAAGA...GAAACTTACATAACAAGCGAGCACAGCTATCAAAAGCCACAAAGCTTTAGTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR GCA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATTGCCTGAAATGAGTTaGCTTGATTATTTTTCCTCT +
Preference number: 4 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVLPEMS*LDYFSS
Trigger: AGAGGAAAAATAATCAAGGCAACTCATTTCAGGCAA...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp ATTAATGGAGGTATCAAAACAATGCACTGCTTTCAAATCAGGCCTGAATCAACACTGGAGCTGTTGCACTaGAGTCTTCTTTTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: INGGIKTMHCFQIRPESTLELLH*SLLFFQ
Trigger: CTGAAAGAAAAGAAGACTGCAGTGCAACAGCTCCAG...TGTTGATTCAGGCCTGATTTGAAAGCAGTGCATTGTTTTGATACCTCCATTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR GCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACTGTTATTTTTCTCTCTaGTTCAGCTACTGCCTGATC +
Preference number: 4 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDCYFSL*FSYCLI
Trigger: GATCAGGCAGTAGCTGAAGCAGAGAGAAAAATAACA...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCATACAGAGCAAAGAGTTaGAATTTGTTGTACTTTGCC +
Preference number: 4 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSYRAKS*NLLYFA
Trigger: GGCAAAGTACAACAAATTGCAACTCTTTGCTCTGTA...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp AGTACACTCAGAAGTCTTTCCTTGGGCTCTAGTTTAGAGAGAACAAAGACTAGGTACAGAGCAAAGAGTTaGAATTTGTTGTACTTTGCC +
Preference number: 4 (lower is better)
Translates to: STLRSLSLGSSLERTKTRYRAKS*NLLYFA
Trigger: GGCAAAGTACAACAAATTGCAACTCTTTGCTCTGTA...CCTAGTCTTTGTTCTCTCTAAACTAGAGCCCAAGGAAAGACTTCTGAGTGTACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR CCA 90 bp CATCCAGGATATATGTCTGAGTGTATGCATAAACCTTTCCATGCATATTTAGAACTCCAGCGCTCAAAATaGACTAGCATCTTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: HPGYMSECMHKPFHAYLELQRSK*TSIFPS
Trigger: AGAAGGGAAGATGCTAGTCCATTTTGAGCGCTGGAG...TTCTAAATATGCATGGAAAGGTTTATGCATACACTCAGACATATATCCTGGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR CCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACCAAGCGTCAAATCCTTaGCTTGTATTAACTCTGGGG +
Preference number: 4 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDQASNP*LVLTLG
Trigger: CCCCAGAGTTAATACAAGCCAAGGATTTGACGCTTG...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AGTACACTCAGAAGTCTTTCCTTGGGCTCTAGTTTAGAGAGAACAAAGACTAGGGGGATTCACAGGCTGTaGAGAACTAGTTTTATTTAT +
Preference number: 4 (lower is better)
Translates to: STLRSLSLGSSLERTKTRGIHRL*RTSFIY
Trigger: ATAAATAAAACTAGTTCTCCACAGCCTGTGAATCCC...CCTAGTCTTTGTTCTCTCTAAACTAGAGCCCAAGGAAAGACTTCTGAGTGTACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR CCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTCCTCCTTTTCTTCCCTaGGACATTCACCACCATGAT +
Preference number: 4 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPAPPFLP*DIHHHD
Trigger: ATCATGGTGGTGAATGTCCCAGGGAAGAAAAGGAGG...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTAGGCACTCTTCACACTaGATCATGAAGCCATTCTCC +
Preference number: 4 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPARHSSH*IMKPFS
Trigger: GGAGAATGGCTTCATGATCCAGTGTGAAGAGTGCCT...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATTTTTTGTACAGAAGATaGCTTTTATCTGGCACACGG +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHFLYRR*LLSGTR
Trigger: CCGTGTGCCAGATAAAAGCCATCTTCTGTACAAAAA...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp ATTGTGGAGACAATGGCTTTCATTTCAGTCTATGGAGAACATAAGCTAATACAGGTCCAAATGTTTCACTaGATGTGGGTAGTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: IVETMAFISVYGEHKLIQVQMFH*MWVVPP
Trigger: AGGAGGAACTACCCACATCCAGTGAAACATTTGGAC...CTGTATTAGCTTATGTTCTCCATAGACTGAAATGAAAGCCATTGTCTCCACAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR TCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACGCATCGTCTTCATCCTaGGACTCCTCAAAATTAGTT +
Preference number: 4 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDASSSS*DSSKLV
Trigger: AACTAATTTTGAGGAGTCTCAGGATGAAGACGATGC...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACGAGTTAGCTCTGTCCTaGGGTGTTATTTTTCTCTCT +
Preference number: 4 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDELALS*GVIFLS
Trigger: AGAGAGAAAAATAACACCTCAGGACAGAGCTAACTC...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR TCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTAGCTGGATTCTTCTCTaGCACTCCCCGATTTTTGTA +
Preference number: 4 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTSWILL*HSPIFV
Trigger: TACAAAAATCGGGGAGTGTCAGAGAAGAATCCAGCT...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATTCCTTCTTTGTTAATTaGTTCAATCTTGGCAGGGTA +
Preference number: 4 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHSFFVN*FNLGRV
Trigger: TACCCTGCCAAGATTGAAGCAATTAACAAAGAAGGA...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTCCCAACAGCTTTGGATaGCAACAAACCAGTGATCTT +
Preference number: 4 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPAPNSFG*QQTSDL
Trigger: AAGATCACTGGTTTGTTGGCATCCAAAGCTGTTGGG...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTCTGGAGCTGTTGCACTaGAGTCTTCTTTTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTLELLH*SLLFFQ
Trigger: CTGAAAGAAAAGAAGACTGCAGTGCAACAGCTCCAG...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACGGGATTCACAGGCTGTaGAGAACTAGTTTTATTTAT +
Preference number: 4 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDGIHRL*RTSFIY
Trigger: ATAAATAAAACTAGTTCTCCACAGCCTGTGAATCCC...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACGTTGAATCAAAGTCTTaGTTGTACTCATCCCCACTC +
Preference number: 4 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDVESKS*LYSSPL
Trigger: GAGTGGGGATGAGTACAACCAAGACTTTGATTCAAC...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACCTGACTAAAGCTTTGTaGCTTTTGATAGCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDLTKAL*LLIAVL
Trigger: GAGCACAGCTATCAAAAGCCACAAAGCTTTAGTCAG...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGTCCAAATGTTTCACTaGATGTGGGTAGTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTVQMFH*MWVVPP
Trigger: AGGAGGAACTACCCACATCCAGTGAAACATTTGGAC...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR CAA 72 bp AATCCACAAATGAAAAGTATTTGTGTAAGGGTCTTTTaGAAAGCTAAAGGTGTCCAGCTGGAAGCTCATACC +
Preference number: 4 (lower is better)
Translates to: NPQMKSICVRVF*KAKGVQLEAHT
Trigger: GGTATGAGCTTCCAGCTGGACACCTTTAGCTTTCAAAAAGACCCTTACACAAATACTTTTCATTTGTGGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
3UTR CAA 72 bp ACCACAGTAGAGATTTCTATAGGTCCAGGTCTCTGTTaGTATTTTACAAGTCTCTACATTCTGTTCAACCCA +
Preference number: 4 (lower is better)
Translates to: TTVEISIGPGLC*YFTSLYILFNP
Trigger: TGGGTTGAACAGAATGTAGAGACTTGTAAAATACAAACAGAGACCTGGACCTATAGAAATCTCTACTGTGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR GCA 90 bp ATTAATGGAGGTATCAAAACAATGCACTGCTTTCAAATCAGGCCTGAATCAACATCTTGTTTGTTAATGTaGTCTCTGGCTGTGGAAAGA +
Preference number: 4 (lower is better)
Translates to: INGGIKTMHCFQIRPESTSCLLM*SLAVER
Trigger: TCTTTCCACAGCCAGAGAGCACATTAACAAACAAGA...TGTTGATTCAGGCCTGATTTGAAAGCAGTGCATTGTTTTGATACCTCCATTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR GCA 90 bp CTGACTAAAGCTTTGTGGCTTTTGATAGCTGTGCTCGCTTGTTATGTAAGTTTCTTGCCTGAAATGAGTTaGCTTGATTATTTTTCCTCT +
Preference number: 4 (lower is better)
Translates to: LTKALWLLIAVLACYVSFLPEMS*LDYFSS
Trigger: AGAGGAAAAATAATCAAGGCAACTCATTTCAGGCAA...GAAACTTACATAACAAGCGAGCACAGCTATCAAAAGCCACAAAGCTTTAGTCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR GCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTCTGGTGACTTCATTCTaGACATTTTCTATGTGCGTG +
Preference number: 4 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTLVTSF*TFSMCV
Trigger: CACGCACATAGAAAATGTGCAGAATGAAGTCACCAG...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTGTTGAATCAAAGTCTTaGTTGTACTCATCCCCACTC +
Preference number: 4 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPAVESKS*LYSSPL
Trigger: GAGTGGGGATGAGTACAACCAAGACTTTGATTCAAC...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CCA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTCTGACTAAAGCTTTGTaGCTTTTGATAGCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPALTKAL*LLIAVL
Trigger: GAGCACAGCTATCAAAAGCCACAAAGCTTTAGTCAG...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR CAA 72 bp GTTTCTAATGAACTAAGTACACTCAGAAGTCTTTCCTaGGGCTCTAGTTTAGAGAGAACAAAGACTAGGAAT +
Preference number: 4 (lower is better)
Translates to: VSNELSTLRSLS*GSSLERTKTRN
Trigger: ATTCCTAGTCTTTGTTCTCTCTAAACTAGAGCCCAAGGAAAGACTTCTGAGTGTACTTAGTTCATTAGAAAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
3UTR CAA 72 bp TCTTCAACAGTGAAGGGAAAAAGCTGGTTCCAAAGGTaGATTTCCAATAATCTCAGACTCAGGATTATTAAC +
Preference number: 4 (lower is better)
Translates to: SSTVKGKSWFQR*ISNNLRLRIIN
Trigger: GTTAATAATCCTGAGTCTGAGATTATTGGAAATCAACCTTTGGAACCAGCTTTTTCCCTTCACTGTTGAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR GCA 90 bp TCATTAGTACATCAAATTGTGGCTGTAGGCCTGTTATCAATATGTCATAACTGGTCCTTCTTTGTTAATTaGTTCAATCTTGGCAGGGTA +
Preference number: 4 (lower is better)
Translates to: SLVHQIVAVGLLSICHNWSFFVN*FNLGRV
Trigger: TACCCTGCCAAGATTGAAGCAATTAACAAAGAAGGA...CCAGTTATGACATATTGATAACAGGCCTACAGCCACAATTTGATGTACTAATGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR GCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTTCTTGTTTGTTAATGTaGTCTCTGGCTGTGGAAAGA +
Preference number: 4 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTSCLLM*SLAVER
Trigger: TCTTTCCACAGCCAGAGAGCACATTAACAAACAAGA...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTTGTTATTTTTCTCTCTaGTTCAGCTACTGCCTGATC +
Preference number: 4 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTCYFSL*FSYCLI
Trigger: GATCAGGCAGTAGCTGAAGCAGAGAGAAAAATAACA...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp TCATTAGTACATCAAATTGTGGCTGTAGGCCTGTTATCAATATGTCATAACTGGTTGCCTGAAATGAGTTaGCTTGATTATTTTTCCTCT +
Preference number: 4 (lower is better)
Translates to: SLVHQIVAVGLLSICHNWLPEMS*LDYFSS
Trigger: AGAGGAAAAATAATCAAGGCAACTCATTTCAGGCAA...CCAGTTATGACATATTGATAACAGGCCTACAGCCACAATTTGATGTACTAATGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR GCA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACTTGCCTGAAATGAGTTaGCTTGATTATTTTTCCTCT +
Preference number: 4 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDLPEMS*LDYFSS
Trigger: AGAGGAAAAATAATCAAGGCAACTCATTTCAGGCAA...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
3UTR CAA 72 bp CAAGGTAACAACACTATTTACAGACTAAGGACATTATaGGCTACATTTCTGAAAAGAAGACGCAAATTCAAC +
Preference number: 4 (lower is better)
Translates to: QGNNTIYRLRTL*ATFLKRRRKFN
Trigger: GTTGAATTTGCGTCTTCTTTTCAGAAATGTAGCCAATAATGTCCTTAGTCTGTAAATAGTGTTGTTACCTTG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR GCA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTTTGCCTGAAATGAGTTaGCTTGATTATTTTTCCTCT +
Preference number: 4 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTLPEMS*LDYFSS
Trigger: AGAGGAAAAATAATCAAGGCAACTCATTTCAGGCAA...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS CCA 90 bp TCTGAACCACAACTTAAATCAAGAGGGAGGCAGGGGCCCAGCTTCTaGAGCGGCACATACGCGATAGCAGGCACCTCTGGTACTGAAGAC +
Preference number: 5 (lower is better)
Translates to: SEPQLKSRGRQGPSF*SGTYAIAGTSGTED
Trigger: GTCTTCAGTACCAGAGGTGCCTGCTATCGCGTATGTGCCGCTCCAGAAGCTGGGCCCCTGCCTCCCTCTTGATTTAAGTTGTGGTTCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGGCTGCAGCAGCTGCTTaGACTAAAGCAATCCAGTCC +
Preference number: 5 (lower is better)
Translates to: TCSTVACTQHTPGLADSRAAAAA*TKAIQS
Trigger: GGACTGGATTGCTTTAGTCAAAGCAGCTGCTGCAGC...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGTCCACCCCAACAGCTTaGGATGCCAACAAACCAGTG +
Preference number: 5 (lower is better)
Translates to: TCSTVACTQHTPGLADSRSTPTA*DANKPV
Trigger: CACTGGTTTGTTGGCATCCAAAGCTGTTGGGGTGGA...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGCCAGGACTGGAGCTGTaGCACTGCAGTCTTCTTTTC +
Preference number: 5 (lower is better)
Translates to: TCSTVACTQHTPGLADSRPGLEL*HCSLLF
Trigger: GAAAAGAAGACTGCAGTGCAACAGCTCCAGTCCTGG...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS CCA 90 bp TGGAGGTGGGATTTGCAAACAACGGCGTCTCCTCCTTTTCTTCCCTaGGACATTCACCACCATGATAGGAGGGATGTGGGGTTCTACTCC +
Preference number: 5 (lower is better)
Translates to: WRWDLQTTASPPFLP*DIHHHDRRDVGFYS
Trigger: GGAGTAGAACCCCACATCCCTCCTATCATGGTGGTGAATGTCCCAGGGAAGAAAAGGAGGAGACGCCGTTGTTTGCAAATCCCACCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS TCA 90 bp CAGCTTCTGGAGCGGCACATACGCGATAGCAGGCACCTCTGGTACTaGAGACTGTTGCTGATTCTGAGAACTGATGGAGAATGCTTTGCC +
Preference number: 5 (lower is better)
Translates to: QLLERHIRDSRHLWY*RLLLILRTDGECFA
Trigger: GGCAAAGCATTCTCCATCAGTTCTCAGAATCAGCAACAGTCTTCAGTACCAGAGGTGCCTGCTATCGCGTATGTGCCGCTCCAGAAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS TCA 90 bp GACATTCACCACCATGATAGGAGGGATGTGGGGTTCTACTCCCTGTaGCTTCTGAACCACAACTTAAATCAAGAGGGAGGCAGGGGCCCA +
Preference number: 5 (lower is better)
Translates to: DIHHHDRRDVGFYSL*LLNHNLNQEGGRGP
Trigger: TGGGCCCCTGCCTCCCTCTTGATTTAAGTTGTGGTTCAGAAGTCACAGGGAGTAGAACCCCACATCCCTCCTATCATGGTGGTGAATGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGATCTCCAGATTCATGTTaGCATTTCTTGCTGCGAGCC +
Preference number: 5 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGSPDSC*HFLLRA
Trigger: GGCTCGCAGCAAGAAATGCAAACATGAATCTGGAGA...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGCTGATGGAGAATGCTTaGCCATCAGTTGCTGAAGAG +
Preference number: 5 (lower is better)
Translates to: TCSTVACTQHTPGLADSRLMENA*PSVAEE
Trigger: CTCTTCAGCAACTGATGGCAAAGCATTCTCCATCAG...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAGCTGCAGCAGCTGCTTaGACTAAAGCAATCCAGTCC +
Preference number: 5 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPAAAAA*TKAIQS
Trigger: GGACTGGATTGCTTTAGTCAAAGCAGCTGCTGCAGC...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGACTCTCTTTCTCTTTATaGCTGTTAGCACTGGCTCGA +
Preference number: 5 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGLSFSL*LLALAR
Trigger: TCGAGCCAGTGCTAACAGCAATAAAGAGAAAGAGAG...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGTCCACCCCAACAGCTTaGGATGCCAACAAACCAGTG +
Preference number: 5 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRSTPTA*DANKPV
Trigger: CACTGGTTTGTTGGCATCCAAAGCTGTTGGGGTGGA...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGCCAGGACTGGAGCTGTaGCACTGCAGTCTTCTTTTC +
Preference number: 5 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRPGLEL*HCSLLF
Trigger: GAAAAGAAGACTGCAGTGCAACAGCTCCAGTCCTGG...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGATCCCTGAAGACAAAGTaGAGGATAACAGTGCAGGTT +
Preference number: 5 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGSLKTK*RITVQV
Trigger: AACCTGCACTGTTATCCTCAACTTTGTCTTCAGGGA...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS GCA 90 bp ATGGGTAAGGTGGCTAAGCGCTGGGATCTTCTTCTTCTCTCACTATaGTTGCAAGGTCTAGGGGGATTCACAGGCTGTGGAGAACTAGTT +
Preference number: 5 (lower is better)
Translates to: MGKVAKRWDLLLLSL*LQGLGGFTGCGELV
Trigger: AACTAGTTCTCCACAGCCTGTGAATCCCCCTAGACCTTGCAAGCATAGTGAGAGAAGAAGAAGATCCCAGCGCTTAGCCACCTTACCCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS GCA 90 bp TGCTGCAGCTCCTTTTACATCACTCACTACTTTGGAGGTGGGATTTaGAAACAACGGCGTCTCCTCCTTTTCTTCCCTGGGACATTCACC +
Preference number: 5 (lower is better)
Translates to: CCSSFYITHYFGGGI*KQRRLLLFFPGTFT
Trigger: GGTGAATGTCCCAGGGAAGAAAAGGAGGAGACGCCGTTGTTTGCAAATCCCACCTCCAAAGTAGTGAGTGATGTAAAAGGAGCTGCAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS CCA 90 bp AGCTTTTCTAGAGAGTCATCAGGCATGGGTAAGGTGGCTAAGCGCTaGGATCTTCTTCTTCTCTCACTATGCTTGCAAGGTCTAGGGGGA +
Preference number: 5 (lower is better)
Translates to: SFSRESSGMGKVAKR*DLLLLSLCLQGLGG
Trigger: TCCCCCTAGACCTTGCAAGCATAGTGAGAGAAGAAGAAGATCCCAGCGCTTAGCCACCTTACCCATGCCTGATGACTCTCTAGAAAAGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCACTTCTCTCACTATGCTaGCAAGGTCTAGGGGGATTC +
Preference number: 5 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPLLSLC*QGLGGF
Trigger: GAATCCCCCTAGACCTTGCAAGCATAGTGAGAGAAG...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGAATGCTTTGCCATCAGTaGCTGAAGAGGAAGAAGAAA +
Preference number: 5 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGMLCHQ*LKRKKK
Trigger: TTTCTTCTTCCTCTTCAGCAACTGATGGCAAAGCAT...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAAGCTACTGCCTGATCTaGGTCTTTCCTCTTCCCAGA +
Preference number: 5 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPSYCLI*VFPLPR
Trigger: TCTGGGAAGAGGAAAGACCAAGATCAGGCAGTAGCT...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp CATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGAAAGAGTTGCAATTTGTaGTACTTTGCCCACGTCAAG +
Preference number: 5 (lower is better)
Translates to: HVALWRAHNTHQDWQTVGKSCNL*YFAHVK
Trigger: CTTGACGTGGGCAAAGTACAACAAATTGCAACTCTT...TCCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp AGGATGGAAAAGCATGCACAGCTCAGTATGTACAGGTATTGTGGGTACGTGAACTCCACCCCAACAGCTTaGGATGCCAACAAACCAGTG +
Preference number: 5 (lower is better)
Translates to: RMEKHAQLSMYRYCGYVNSTPTA*DANKPV
Trigger: CACTGGTTTGTTGGCATCCAAAGCTGTTGGGGTGGA...GTTCACGTACCCACAATACCTGTACATACTGAGCTGTGCATGCTTTTCCATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR CAA 90 bp AGGATGGAAAAGCATGCACAGCTCAGTATGTACAGGTATTGTGGGTACGTGAACCCAGGACTGGAGCTGTaGCACTGCAGTCTTCTTTTC +
Preference number: 5 (lower is better)
Translates to: RMEKHAQLSMYRYCGYVNPGLEL*HCSLLF
Trigger: GAAAAGAAGACTGCAGTGCAACAGCTCCAGTCCTGG...GTTCACGTACCCACAATACCTGTACATACTGAGCTGTGCATGCTTTTCCATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR CAA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGTCTCCAGATTCATGTTaGCATTTCTTGCTGCGAGCC +
Preference number: 5 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRSPDSC*HFLLRA
Trigger: GGCTCGCAGCAAGAAATGCAAACATGAATCTGGAGA...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp ACATGTAGCACTGTGGCGTGCACACAACACACACCAGGACTGGCAGACAGTAGGTTCTTTGAAGGTAATTaGAACCATTTTCCCCCATCT +
Preference number: 5 (lower is better)
Translates to: TCSTVACTQHTPGLADSRFFEGN*NHFPPS
Trigger: AGATGGGGGAAAATGGTTCAAATTACCTTCAAAGAA...CCTACTGTCTGCCAGTCCTGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp TTCCAGAACGTCCACTTCTTTTTCTATGAGGTCCATCCTGCTGGTGACTTCATTTCCACCCCAACAGCTTaGGATGCCAACAAACCAGTG +
Preference number: 5 (lower is better)
Translates to: FQNVHFFFYEVHPAGDFISTPTA*DANKPV
Trigger: CACTGGTTTGTTGGCATCCAAAGCTGTTGGGGTGGA...AATGAAGTCACCAGCAGGATGGACCTCATAGAAAAAGAAGTGGACGTTCTGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR CAA 90 bp ACCCAGTATGTGGCGCACAGGTTTGTATGGGTTAATGGCATTGCTTATGGCAGGACAAGCGTCAAATCCTaGGCTTGTATTAACTCTGGG +
Preference number: 5 (lower is better)
Translates to: TQYVAHRFVWVNGIAYGRTSVKS*ACINSG
Trigger: CCCAGAGTTAATACAAGCCAAGGATTTGACGCTTGT...CCTGCCATAAGCAATGCCATTAACCCATACAAACCTGTGCGCCACATACTGGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAACAAGCGTCAAATCCTaGGCTTGTATTAACTCTGGG +
Preference number: 5 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPTSVKS*ACINSG
Trigger: CCCAGAGTTAATACAAGCCAAGGATTTGACGCTTGT...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp CCACTCCTTATCATAACGATATTTTGCACTCCATCTCTGACCCGGAGGGTCCCGATGCTTTGCCATCAGTaGCTGAAGAGGAAGAAGAAA +
Preference number: 5 (lower is better)
Translates to: PLLIITIFCTPSLTRRVPMLCHQ*LKRKKK
Trigger: TTTCTTCTTCCTCTTCAGCAACTGATGGCAAAGCAT...CGGGACCCTCCGGGTCAGAGATGGAGTGCAAAATATCGTTATGATAAGGAGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR CAA 90 bp TCACTTATGCATACCTGCACATGTAGCACTGTGGCGTGCACACAACACACACCAGCAAAGAGTTGCAATTaGTTGTACTTTGCCCACGTC +
Preference number: 5 (lower is better)
Translates to: SLMHTCTCSTVACTQHTPAKSCN*LYFAHV
Trigger: GACGTGGGCAAAGTACAACAAATTGCAACTCTTTGC...TGGTGTGTGTTGTGTGCACGCCACAGTGCTACATGTGCAGGTATGCATAAGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS CCA 90 bp AGGAAGAAGAAAGCTTTTCTAGAGAGTCATCAGGCATGGGTAAGGTaGCTAAGCGCTGGGATCTTCTTCTTCTCTCACTATGCTTGCAAG +
Preference number: 5 (lower is better)
Translates to: RKKKAFLESHQAWVR*LSAGIFFFSHYACK
Trigger: CTTGCAAGCATAGTGAGAGAAGAAGAAGATCCCAGCGCTTAGCCACCTTACCCATGCCTGATGACTCTCTAGAAAAGCTTTCTTCTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp AGTACACTCAGAAGTCTTTCCTTGGGCTCTAGTTTAGAGAGAACAAAGACTAGGGCTGCAGCAGCTGCTTaGACTAAAGCAATCCAGTCC +
Preference number: 5 (lower is better)
Translates to: STLRSLSLGSSLERTKTRAAAAA*TKAIQS
Trigger: GGACTGGATTGCTTTAGTCAAAGCAGCTGCTGCAGC...CCTAGTCTTTGTTCTCTCTAAACTAGAGCCCAAGGAAAGACTTCTGAGTGTACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR CAA 90 bp AACACTTTATTCCCTGAAGCTGGATTCTTCTCTGACACTCCCCGATTTTTGTACCCAGGACTGGAGCTGTaGCACTGCAGTCTTCTTTTC +
Preference number: 5 (lower is better)
Translates to: NTLFPEAGFFSDTPRFLYPGLEL*HCSLLF
Trigger: GAAAAGAAGACTGCAGTGCAACAGCTCCAGTCCTGG...GTACAAAAATCGGGGAGTGTCAGAGAAGAATCCAGCTTCAGGGAATAAAGTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR CAA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACGCTGCAGCAGCTGCTTaGACTAAAGCAATCCAGTCC +
Preference number: 5 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDAAAAA*TKAIQS
Trigger: GGACTGGATTGCTTTAGTCAAAGCAGCTGCTGCAGC...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATCCAGGACTGGAGCTGTaGCACTGCAGTCTTCTTTTC +
Preference number: 5 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHPGLEL*HCSLLF
Trigger: GAAAAGAAGACTGCAGTGCAACAGCTCCAGTCCTGG...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCTCCAGATTCATGTTaGCATTTCTTGCTGCGAGCC +
Preference number: 5 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVSPDSC*HFLLRA
Trigger: GGCTCGCAGCAAGAAATGCAAACATGAATCTGGAGA...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCACTTCTCTCACTATGCTaGCAAGGTCTAGGGGGATTC +
Preference number: 5 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSLLSLC*QGLGGF
Trigger: GAATCCCCCTAGACCTTGCAAGCATAGTGAGAGAAG...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTAGCTACTGCCTGATCTaGGTCTTTCCTCTTCCCAGA +
Preference number: 5 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLSYCLI*VFPLPR
Trigger: TCTGGGAAGAGGAAAGACCAAGATCAGGCAGTAGCT...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTACTCTCTTTCTCTTTATaGCTGTTAGCACTGGCTCGA +
Preference number: 5 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVLSFSL*LLALAR
Trigger: TCGAGCCAGTGCTAACAGCAATAAAGAGAAAGAGAG...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp TTCCAGAACGTCCACTTCTTTTTCTATGAGGTCCATCCTGCTGGTGACTTCATTCTCTCTTTCTCTTTATaGCTGTTAGCACTGGCTCGA +
Preference number: 5 (lower is better)
Translates to: FQNVHFFFYEVHPAGDFILSFSL*LLALAR
Trigger: TCGAGCCAGTGCTAACAGCAATAAAGAGAAAGAGAG...AATGAAGTCACCAGCAGGATGGACCTCATAGAAAAAGAAGTGGACGTTCTGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR CAA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCCCTGAAGACAAAGTaGAGGATAACAGTGCAGGTT +
Preference number: 5 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVSLKTK*RITVQV
Trigger: AACCTGCACTGTTATCCTCAACTTTGTCTTCAGGGA...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp TTGTACAGAAGATGGCTTTTATCTGGCACACGGAGCTCCCCATCTTCTTCAAAATCCCTGAAGACAAAGTaGAGGATAACAGTGCAGGTT +
Preference number: 5 (lower is better)
Translates to: LYRRWLLSGTRSSPSSSKSLKTK*RITVQV
Trigger: AACCTGCACTGTTATCCTCAACTTTGTCTTCAGGGA...TTTTGAAGAAGATGGGGAGCTCCGTGTGCCAGATAAAAGCCATCTTCTGTACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR CAA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTAACAAGCGTCAAATCCTaGGCTTGTATTAACTCTGGG +
Preference number: 5 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVTSVKS*ACINSG
Trigger: CCCAGAGTTAATACAAGCCAAGGATTTGACGCTTGT...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCACTGATGGAGAATGCTTaGCCATCAGTTGCTGAAGAG +
Preference number: 5 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSLMENA*PSVAEE
Trigger: CTCTTCAGCAACTGATGGCAAAGCATTCTCCATCAG...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTGATCAACAGACAGAATaGCCCTCGGGTACTGATAAG +
Preference number: 5 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLDQQTE*PSGTDK
Trigger: CTTATCAGTACCCGAGGGCAATTCTGTCTGTTGATC...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTAGCAAAGAGTTGCAATTaGTTGTACTTTGCCCACGTC +
Preference number: 5 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVAKSCN*LYFAHV
Trigger: GACGTGGGCAAAGTACAACAAATTGCAACTCTTTGC...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp ATTAATGGAGGTATCAAAACAATGCACTGCTTTCAAATCAGGCCTGAATCAACAGCTGCAGCAGCTGCTTaGACTAAAGCAATCCAGTCC +
Preference number: 5 (lower is better)
Translates to: INGGIKTMHCFQIRPESTAAAAA*TKAIQS
Trigger: GGACTGGATTGCTTTAGTCAAAGCAGCTGCTGCAGC...TGTTGATTCAGGCCTGATTTGAAAGCAGTGCATTGTTTTGATACCTCCATTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR CAA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCATCCCTGAAGACAAAGTaGAGGATAACAGTGCAGGTT +
Preference number: 5 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSSLKTK*RITVQV
Trigger: AACCTGCACTGTTATCCTCAACTTTGTCTTCAGGGA...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTAATGCTTTGCCATCAGTaGCTGAAGAGGAAGAAGAAA +
Preference number: 5 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVMLCHQ*LKRKKK
Trigger: TTTCTTCTTCCTCTTCAGCAACTGATGGCAAAGCAT...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp CTGACTAAAGCTTTGTGGCTTTTGATAGCTGTGCTCGCTTGTTATGTAAGTTTCCTGATGGAGAATGCTTaGCCATCAGTTGCTGAAGAG +
Preference number: 5 (lower is better)
Translates to: LTKALWLLIAVLACYVSFLMENA*PSVAEE
Trigger: CTCTTCAGCAACTGATGGCAAAGCATTCTCCATCAG...GAAACTTACATAACAAGCGAGCACAGCTATCAAAAGCCACAAAGCTTTAGTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR CAA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATGATCAACAGACAGAATaGCCCTCGGGTACTGATAAG +
Preference number: 5 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHDQQTE*PSGTDK
Trigger: CTTATCAGTACCCGAGGGCAATTCTGTCTGTTGATC...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTTCCACCCCAACAGCTTaGGATGCCAACAAACCAGTG +
Preference number: 5 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPASTPTA*DANKPV
Trigger: CACTGGTTTGTTGGCATCCAAAGCTGTTGGGGTGGA...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACACAAGCGTCAAATCCTaGGCTTGTATTAACTCTGGG +
Preference number: 5 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDTSVKS*ACINSG
Trigger: CCCAGAGTTAATACAAGCCAAGGATTTGACGCTTGT...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTATGCTTTGCCATCAGTaGCTGAAGAGGAAGAAGAAA +
Preference number: 5 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLMLCHQ*LKRKKK
Trigger: TTTCTTCTTCCTCTTCAGCAACTGATGGCAAAGCAT...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTTATCATAACGATATTTaGCACTCCATCTCTGACCCG +
Preference number: 5 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLYHNDI*HSISDP
Trigger: CGGGTCAGAGATGGAGTGCAAAATATCGTTATGATA...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp AATAACTACCCCACAATGACTTCTGCTAAAGCATTCATCAGTAGGCTCTTTGACAAAGCTTTGTGGCTTTaGATAGCTGTGCTCGCTTGT +
Preference number: 5 (lower is better)
Translates to: NNYPTMTSAKAFISRLFDKALWL*IAVLAC
Trigger: ACAAGCGAGCACAGCTATCAAAAGCCACAAAGCTTT...GTCAAAGAGCCTACTGATGAATGCTTTAGCAGAAGTCATTGTGGGGTAGTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATGCAAAGAGTTGCAATTaGTTGTACTTTGCCCACGTC +
Preference number: 5 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHAKSCN*LYFAHV
Trigger: GACGTGGGCAAAGTACAACAAATTGCAACTCTTTGC...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTCTTCTCTCACTATGCTaGCAAGGTCTAGGGGGATTC +
Preference number: 5 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTLLSLC*QGLGGF
Trigger: GAATCCCCCTAGACCTTGCAAGCATAGTGAGAGAAG...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTAGCTACTGCCTGATCTaGGTCTTTCCTCTTCCCAGA +
Preference number: 5 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTSYCLI*VFPLPR
Trigger: TCTGGGAAGAGGAAAGACCAAGATCAGGCAGTAGCT...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp TACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTGAGGCTCATAAGAGTTGCAATTTGTaGTACTTTGCCCACGTCAAG +
Preference number: 5 (lower is better)
Translates to: YKLYLPEIMRRNPSTEAHKSCNL*YFAHVK
Trigger: CTTGACGTGGGCAAAGTACAACAAATTGCAACTCTT...ATGAGCCTCAGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp GCTTATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTAATACAGAGCAAAGAGTaGCAATTTGTTGTACTTTGC +
Preference number: 5 (lower is better)
Translates to: AYGRWKDSCNIQILFPAVIQSKE*QFVVLC
Trigger: GCAAAGTACAACAAATTGCAACTCTTTGCTCTGTAT...TACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATAAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp TCATTAGTACATCAAATTGTGGCTGTAGGCCTGTTATCAATATGTCATAACTGGCTCTCTTTCTCTTTATaGCTGTTAGCACTGGCTCGA +
Preference number: 5 (lower is better)
Translates to: SLVHQIVAVGLLSICHNWLSFSL*LLALAR
Trigger: TCGAGCCAGTGCTAACAGCAATAAAGAGAAAGAGAG...CCAGTTATGACATATTGATAACAGGCCTACAGCCACAATTTGATGTACTAATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR CAA 90 bp TATGGCAGGTGGAAGGATTCCTGCAATATTCAAATCCTCTTTCCAGCAGTATCATTCTTTGAAGGTAATTaGAACCATTTTCCCCCATCT +
Preference number: 5 (lower is better)
Translates to: YGRWKDSCNIQILFPAVSFFEGN*NHFPPS
Trigger: AGATGGGGGAAAATGGTTCAAATTACCTTCAAAGAA...TGATACTGCTGGAAAGAGGATTTGAATATTGCAGGAATCCTTCCACCTGCCATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp CATCCAGGATATATGTCTGAGTGTATGCATAAACCTTTCCATGCATATTTAGAAGATCAACAGACAGAATaGCCCTCGGGTACTGATAAG +
Preference number: 5 (lower is better)
Translates to: HPGYMSECMHKPFHAYLEDQQTE*PSGTDK
Trigger: CTTATCAGTACCCGAGGGCAATTCTGTCTGTTGATC...TTCTAAATATGCATGGAAAGGTTTATGCATACACTCAGACATATATCCTGGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR CAA 90 bp GTGGGAACACTGAGTCTGTACTATAATACTGTGCATTATTTTAATCAAGGTGACAAAGCTTTGTGGCTTTaGATAGCTGTGCTCGCTTGT +
Preference number: 5 (lower is better)
Translates to: VGTLSLYYNTVHYFNQGDKALWL*IAVLAC
Trigger: ACAAGCGAGCACAGCTATCAAAAGCCACAAAGCTTT...GTCACCTTGATTAAAATAATGCACAGTATTATAGTACAGACTCAGTGTTCCCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp AAGACAGTGACAATGGCAGCAGATTCAGTTTATTGGGGAGGAAGTAGTATGCTTATACAGAGCAAAGAGTaGCAATTTGTTGTACTTTGC +
Preference number: 5 (lower is better)
Translates to: KTVTMAADSVYWGGSSMLIQSKE*QFVVLC
Trigger: GCAAAGTACAACAAATTGCAACTCTTTGCTCTGTAT...AAGCATACTACTTCCTCCCCAATAAACTGAATCTGCTGCCATTGTCACTGTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTCTCTCTTTCTCTTTATaGCTGTTAGCACTGGCTCGA +
Preference number: 5 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTLSFSL*LLALAR
Trigger: TCGAGCCAGTGCTAACAGCAATAAAGAGAAAGAGAG...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp ATCATGAAGCCATTCTCCTCATCCAGTTCACAGATACAGCGTACAATCTCATTATTCTTTGAAGGTAATTaGAACCATTTTCCCCCATCT +
Preference number: 5 (lower is better)
Translates to: IMKPFSSSSSQIQRTISLFFEGN*NHFPPS
Trigger: AGATGGGGGAAAATGGTTCAAATTACCTTCAAAGAA...TAATGAGATTGTACGCTGTATCTGTGAACTGGATGAGGAGAATGGCTTCATGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229576.2
CDS-3UTR CAA 90 bp CTGTTTGTATTTTACAAGTCTCTACATTCTGTTCAACCCATTGCAAAGTGTATGAAAGCTTTGTGGCTTTaGATAGCTGTGCTCGCTTGT +
Preference number: 5 (lower is better)
Translates to: LFVFYKSLHSVQPIAKCMKALWL*IAVLAC
Trigger: ACAAGCGAGCACAGCTATCAAAAGCCACAAAGCTTT...CATACACTTTGCAATGGGTTGAACAGAATGTAGAGACTTGTAAAATACAAACAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR CAA 90 bp AATATGTTGTATACTGCATTTTTAGTGAGCCTGTATTTTGACAGTGATCCTGCTTATCATAACGATATTTaGCACTCCATCTCTGACCCG +
Preference number: 5 (lower is better)
Translates to: NMLYTAFLVSLYFDSDPAYHNDI*HSISDP
Trigger: CGGGTCAGAGATGGAGTGCAAAATATCGTTATGATA...AGCAGGATCACTGTCAAAATACAGGCTCACTAAAAATGCAGTATACAACATATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTTATCATAACGATATTTaGCACTCCATCTCTGACCCG +
Preference number: 5 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTYHNDI*HSISDP
Trigger: CGGGTCAGAGATGGAGTGCAAAATATCGTTATGATA...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTAAGAGTTGCAATTTGTaGTACTTTGCCCACGTCAAG +
Preference number: 5 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTKSCNL*YFAHVK
Trigger: CTTGACGTGGGCAAAGTACAACAAATTGCAACTCTT...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS-3UTR CAA 90 bp TCATTAGTACATCAAATTGTGGCTGTAGGCCTGTTATCAATATGTCATAACTGGTTCTTTGAAGGTAATTaGAACCATTTTCCCCCATCT +
Preference number: 5 (lower is better)
Translates to: SLVHQIVAVGLLSICHNWFFEGN*NHFPPS
Trigger: AGATGGGGGAAAATGGTTCAAATTACCTTCAAAGAA...CCAGTTATGACATATTGATAACAGGCCTACAGCCACAATTTGATGTACTAATGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230882.2
CDS-3UTR CAA 90 bp CATCCAGGATATATGTCTGAGTGTATGCATAAACCTTTCCATGCATATTTAGAATTCTTTGAAGGTAATTaGAACCATTTTCCCCCATCT +
Preference number: 5 (lower is better)
Translates to: HPGYMSECMHKPFHAYLEFFEGN*NHFPPS
Trigger: AGATGGGGGAAAATGGTTCAAATTACCTTCAAAGAA...TTCTAAATATGCATGGAAAGGTTTATGCATACACTCAGACATATATCCTGGATG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229160.2
CDS-3UTR CAA 90 bp AAAAAGAAGTACAAATTATATCTGCCAGAAATTATGAGGAGGAATCCCTCCACTATACAGAGCAAAGAGTaGCAATTTGTTGTACTTTGC +
Preference number: 5 (lower is better)
Translates to: KKKYKLYLPEIMRRNPSTIQSKE*QFVVLC
Trigger: GCAAAGTACAACAAATTGCAACTCTTTGCTCTGTAT...AGTGGAGGGATTCCTCCTCATAATTTCTGGCAGATATAATTTGTACTTCTTTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000230948.2
CDS GCA 72 bp CCAGCTGGGTCGATAGGACAACACCAGCTTAGTGGATaGTGGGATTTCACCTGCCCCTTAGCATCCTCAGGC +
Preference number: 6 (lower is better)
Translates to: PAGSIGQHQLSG*WDFTCPLASSG
Trigger: GCCTGAGGATGCTAAGGGGCAGGTGAAATCCCAGCATCCACTAAGCTGGTGTTGTCCTATCGACCCAGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230882.2
CDS GCA 72 bp GTGGCTAAGCGCTGGGATCTTCTTCTTCTCTCACTATaGTTGCAAGGTCTAGGGGGATTCACAGGCTGTGGA +
Preference number: 6 (lower is better)
Translates to: VAKRWDLLLLSL*LQGLGGFTGCG
Trigger: TCCACAGCCTGTGAATCCCCCTAGACCTTGCAAGCATAGTGAGAGAAGAAGAAGATCCCAGCGCTTAGCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS CCA 72 bp GATTTGCAAACAACGGCGTCTCCTCCTTTTCTTCCCTaGGACATTCACCACCATGATAGGAGGGATGTGGGG +
Preference number: 6 (lower is better)
Translates to: DLQTTASPPFLP*DIHHHDRRDVG
Trigger: CCCCACATCCCTCCTATCATGGTGGTGAATGTCCCAGGGAAGAAAAGGAGGAGACGCCGTTGTTTGCAAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS TCA 72 bp CACCATGATAGGAGGGATGTGGGGTTCTACTCCCTGTaGCTTCTGAACCACAACTTAAATCAAGAGGGAGGC +
Preference number: 6 (lower is better)
Translates to: HHDRRDVGFYSL*LLNHNLNQEGG
Trigger: GCCTCCCTCTTGATTTAAGTTGTGGTTCAGAAGTCACAGGGAGTAGAACCCCACATCCCTCCTATCATGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS CCA 72 bp AGAGAGTCATCAGGCATGGGTAAGGTGGCTAAGCGCTaGGATCTTCTTCTTCTCTCACTATGCTTGCAAGGT +
Preference number: 6 (lower is better)
Translates to: RESSGMGKVAKR*DLLLLSLCLQG
Trigger: ACCTTGCAAGCATAGTGAGAGAAGAAGAAGATCCCAGCGCTTAGCCACCTTACCCATGCCTGATGACTCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS CCA 72 bp TTGACTAAAGCAATCCAGTCCTCACTTCCCATAGACTaGTTACACGATCCAGCTGGGTCGATAGGACAACAC +
Preference number: 6 (lower is better)
Translates to: LTKAIQSSLPID*LHDPAGSIGQH
Trigger: GTGTTGTCCTATCGACCCAGCTGGATCGTGTAACCAGTCTATGGGAAGTGAGGACTGGATTGCTTTAGTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230882.2
CDS TCA 72 bp GGCTGTGGAAAGACGATCTTTGGAACGGTGTCTATGTaGAGTCCAAATGTTTCACTGGATGTGGGTAGTTCC +
Preference number: 6 (lower is better)
Translates to: GCGKTIFGTVSM*SPNVSLDVGSS
Trigger: GGAACTACCCACATCCAGTGAAACATTTGGACTTCACATAGACACCGTTCCAAAGATCGTCTTTCCACAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000229160.2
ENSMUST00000230882.2
ENSMUST00000230948.2
CDS CAA 72 bp CCTGTTTTATTTTTCGCTGCAGCTGCAGCAGCTGCTTaGACTAAAGCAATCCAGTCCTCACTTCCCATAGAC +
Preference number: 6 (lower is better)
Translates to: PVLFFAAAAAAA*TKAIQSSLPID
Trigger: GTCTATGGGAAGTGAGGACTGGATTGCTTTAGTCAAAGCAGCTGCTGCAGCTGCAGCGAAAAATAAAACAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230882.2
CDS TCA 72 bp ATGTGGGTAGTTCCTCCTTCTTCTCAATCTCTGCTGTaGCTATGCACGTTGAAGTCTCTGCCTTCTTTGAAG +
Preference number: 6 (lower is better)
Translates to: MWVVPPSSQSLL*LCTLKSLPSLK
Trigger: CTTCAAAGAAGGCAGAGACTTCAACGTGCATAGTCACAGCAGAGATTGAGAAGAAGGAGGAACTACCCACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230882.2
ENSMUST00000230948.2
CDS TCA 72 bp GGCTGTGGAAAGACGATCTTTGGAACGGTGTCTATGTaGAGTCCTACAAATGTTTCACTGGATGTGGGTAGT +
Preference number: 6 (lower is better)
Translates to: GCGKTIFGTVSM*SPTNVSLDVGS
Trigger: ACTACCCACATCCAGTGAAACATTTGTAGGACTTCACATAGACACCGTTCCAAAGATCGTCTTTCCACAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048188.10
ENSMUST00000229576.2
CDS CAA 72 bp TCTTCTTTTCTTTCAGCACCATCCACCCCAACAGCTTaGGATGCCAACAAACCAGTGATCTTGTTAAGTCGG +
Preference number: 6 (lower is better)
Translates to: SSFLSAPSTPTA*DANKPVILLSR
Trigger: CCGACTTAACAAGATCACTGGTTTGTTGGCATCCAAAGCTGTTGGGGTGGATGGTGCTGAAAGAAAAGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230882.2
ENSMUST00000230948.2
CDS CAA 90 bp TCCTCTTGTTTGTTAATGTGCTCTCTGGCTGTGGAAAGACGATCTTaGGAACGGTGTCTATGTGAAGTCCAAATGTTTCACTGGATGTGG +
Preference number: 6 (lower is better)
Translates to: SSCLLMCSLAVERRS*ERCLCEVQMFHWMW
Trigger: CCACATCCAGTGAAACATTTGGACTTCACATAGACACCGTTCCAAAGATCGTCTTTCCACAGCCAGAGAGCACATTAACAAACAAGAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000229160.2
ENSMUST00000230882.2
ENSMUST00000230948.2
CDS CAA 90 bp TCCTCTTGTTTGTTAATGTGCTCTCTGGCTGTGGAAAGACGATCTTaGGAACGGTGTCTATGTGAAGTCCTACAAATGTTTCACTGGATG +
Preference number: 6 (lower is better)
Translates to: SSCLLMCSLAVERRS*ERCLCEVLQMFHWM
Trigger: CATCCAGTGAAACATTTGTAGGACTTCACATAGACACCGTTCCAAAGATCGTCTTTCCACAGCCAGAGAGCACATTAACAAACAAGAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048188.10
ENSMUST00000229576.2
CDS TCA 72 bp CCTGAAGACAAAGTTGAGGATAACAGTGCAGGTTTCTaGGTGTTGGCAGAACTGCTAATGACAGCTTCATTT +
Preference number: 6 (lower is better)
Translates to: PEDKVEDNSAGF*VLAELLMTASF
Trigger: AAATGAAGCTGTCATTAGCAGTTCTGCCAACACTCAGAAACCTGCACTGTTATCCTCAACTTTGTCTTCAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS GCA 72 bp TTTTTATACACCCAGAAGACTCTCCAGATTCATGTTTaGATTTCTTGCTGCGAGCCTTCCCTGAAGACAAAG +
Preference number: 6 (lower is better)
Translates to: FLYTQKTLQIHV*ISCCEPSLKTK
Trigger: CTTTGTCTTCAGGGAAGGCTCGCAGCAAGAAATGCAAACATGAATCTGGAGAGTCTTCTGGGTGTATAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000048188.10
ENSMUST00000229160.2
ENSMUST00000229576.2
ENSMUST00000230948.2
CDS CAA 72 bp TTGTTAATGTGCTCTCTGGCTGTGGAAAGACGATCTTaGGAACGGTGTCTATGTGAAGTCCAAATGTTTCAC +
Preference number: 6 (lower is better)
Translates to: LLMCSLAVERRS*ERCLCEVQMFH
Trigger: GTGAAACATTTGGACTTCACATAGACACCGTTCCAAAGATCGTCTTTCCACAGCCAGAGAGCACATTAACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000229160.2
ENSMUST00000230882.2
ENSMUST00000230948.2
CDS CAA 72 bp TTGTTAATGTGCTCTCTGGCTGTGGAAAGACGATCTTaGGAACGGTGTCTATGTGAAGTCCTACAAATGTTT +
Preference number: 6 (lower is better)
Translates to: LLMCSLAVERRS*ERCLCEVLQMF
Trigger: AAACATTTGTAGGACTTCACATAGACACCGTTCCAAAGATCGTCTTTCCACAGCCAGAGAGCACATTAACAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048188.10
ENSMUST00000229576.2