Pregenerated sensors for PHF11C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091144Ensembl transcript IDs: ENSMUST00000166912.3
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AGGCTGAGCAAAGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCCTCTCTTCCTCTTCATaGTTGGGCCATCAGCACTTT | + |
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Preference number: 4 (lower is better) Translates to: RLSKALVLLPLTGVGRVGLSSSS*LGHQHF Trigger: AAAGTGCTGATGGCCCAAGCATGAAGAGGAAGAGAG...GCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTTGCTCAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS-3UTR CCA 90 bp | GCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGACTTCCCATCAGCACTTTCAGTaGCCTCTTCTTGTTGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: ALVLLPLTGVGRVGRKTSHQHFQ*PLLVVE Trigger: CTCCACAACAAGAAGAGGCCACTGAAAGTGCTGATG...GGAAGTCTTCCTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS-3UTR CCA 90 bp | GCTGAGCAAAGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGCTTCCTCTTCATGCTTaGGCCATCAGCACTTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: AEQSSGVAALDWGGQGRQLPLHA*AISTFS Trigger: ACTGAAAGTGCTGATGGCCCAAGCATGAAGAGGAAG...CTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTTGCTCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS-3UTR CCA 90 bp | AGCAAAGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGGGCCTCTTCTTGTTGTaGAGGATGTTCTGGGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: SKALVLLPLTGVGRVGRKGLFLL*RMFWAK Trigger: TTTTGCCCAGAACATCCTCCACAACAAGAAGAGGCC...CTTCCTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| 3UTR CAA 72 bp | CTAAGATTCCATTTAAGGCTGAGCAAAGCTCTGGTGTaGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LRFHLRLSKALV*LPLTGVGRVGR Trigger: CCTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTTGCTCAGCCTTAAATGGAATCTTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS-3UTR TCA 90 bp | AGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGACTTCGTCTTTTGGATCTCATaGATTTCACCACTTTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: SSGVAALDWGGQGRQEDFVFWIS*ISPLLA Trigger: AGCCAAAAGTGGTGAAATTCATGAGATCCAAAAGAC...GAAGTCTTCCTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS-3UTR GCA 90 bp | CTGAGCAAAGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGGGAAACATATTTTATGTaGTTGGTAGCTCCTCTAGTC | + |
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Preference number: 4 (lower is better) Translates to: LSKALVLLPLTGVGRVGRETYFM*LVAPLV Trigger: GACTAGAGGAGCTACCAAGCACATAAAATATGTTTC...CCTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTTGCTCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS-3UTR CCA 90 bp | GCTGAGCAAAGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGATAAGTGGTAATTCTTaGCACAAGATGTTTCACCAC | + |
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Preference number: 4 (lower is better) Translates to: AEQSSGVAALDWGGQGRQISGNS*HKMFHH Trigger: GTGGTGAAACATCTTGTGCCAAGAATTACCACTTAT...CTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTTGCTCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS-3UTR CCA 90 bp | TCTAAGATTCCATTTAAGGCTGAGCAAAGCTCTGGTGTTGCTGCCCTTGACTGGACAGCTGCATCTCTGTaGCCGAGAGGCTCTCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: SKIPFKAEQSSGVAALDWTAASL*PRGSPV Trigger: GACAGGAGAGCCTCTCGGCCACAGAGATGCAGCTGT...CCAGTCAAGGGCAGCAACACCAGAGCTTTGCTCAGCCTTAAATGGAATCTTAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS-3UTR TCA 90 bp | AGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGACTTCAGCAAACAGTTTTCATaGGCAGCTATATTAGCTGAT | + |
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Preference number: 4 (lower is better) Translates to: SSGVAALDWGGQGRQEDFSKQFS*AAILAD Trigger: ATCAGCTAATATAGCTGCTCATGAAAACTGTTTGCT...GAAGTCTTCCTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS-3UTR CCA 90 bp | TTTATTAAGTGTGCTAAATATTGTCAATGTGGTAGTGAGCAGAAACCCAGGGTATCTAGCTATTTTACATaGATTATGGGCCTCACATTC | + |
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Preference number: 4 (lower is better) Translates to: FIKCAKYCQCGSEQKPRVSSYFT*IMGLTF Trigger: GAATGTGAGGCCCATAATCCATGTAAAATAGCTAGA...TACCCTGGGTTTCTGCTCACTACCACATTGACAATATTTAGCACACTTAATAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS-3UTR CAA 90 bp | AGGCTGAGCAAAGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGTGGCCTCTTCTTGTaGTGGAGGATGTTCTGGGCA | + |
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Preference number: 5 (lower is better) Translates to: RLSKALVLLPLTGVGRVGSGLFL*WRMFWA Trigger: TGCCCAGAACATCCTCCACAACAAGAAGAGGCCACT...GCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTTGCTCAGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS-3UTR CAA 90 bp | AGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGACTTCTTCAGTGGCCTCTTCTaGTTGTGGAGGATGTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: SSGVAALDWGGQGRQEDFFSGLF*LWRMFW Trigger: CCAGAACATCCTCCACAACAAGAAGAGGCCACTGAA...GAAGTCTTCCTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS-3UTR CAA 90 bp | GCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGACTTCCAAAACGAGCATATCATaGTGCTTCCTCTCCAGATCC | + |
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Preference number: 5 (lower is better) Translates to: ALVLLPLTGVGRVGRKTSKTSIS*CFLSRS Trigger: GGATCTGGAGAGGAAGCACAATGATATGCTCGTTTT...GGAAGTCTTCCTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS-3UTR CAA 90 bp | AGCAAAGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGCTAGTCTTAAAGAAATaGGCAGGACCCTCTTCTTGT | + |
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Preference number: 5 (lower is better) Translates to: SKALVLLPLTGVGRVGRKLVLKK*AGPSSC Trigger: ACAAGAAGAGGGTCCTGCCAATTTCTTTAAGACTAG...CTTCCTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS-3UTR CAA 90 bp | AGCAAAGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGACATATTTTATGTGCTaGGTAGCTCCTCTAGTCTTA | + |
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Preference number: 5 (lower is better) Translates to: SKALVLLPLTGVGRVGRKTYFMC*VAPLVL Trigger: TAAGACTAGAGGAGCTACCAAGCACATAAAATATGT...CTTCCTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS GCA 90 bp | AAGTCCTGCTTTCTTGCATTTCTTAAGAAAAGGAGCTTTGACAGCTaGATCTCTGTGGCCGAGAGGCTCTCCTGTCACATGTCTTTTGGA | + |
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Preference number: 5 (lower is better) Translates to: KSCFLAFLKKRSFDS*ISVAERLSCHMSFG Trigger: TCCAAAAGACATGTGACAGGAGAGCCTCTCGGCCACAGAGATGCAGCTGTCAAAGCTCCTTTTCTTAAGAAATGCAAGAAAGCAGGACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS CCA 90 bp | TTCTTCCTCTCTTCCTCTTCATGCTTGGGCCATCAGCACTTTCAGTaGCCTCTTCTTGTTGTGGAGGATGTTCTGGGCAAAATAATTTGT | + |
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Preference number: 5 (lower is better) Translates to: FFLSSSSCLGHQHFQ*PLLVVEDVLGKIIC Trigger: ACAAATTATTTTGCCCAGAACATCCTCCACAACAAGAAGAGGCCACTGAAAGTGCTGATGGCCCAAGCATGAAGAGGAAGAGAGGAAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS CCA 90 bp | GTAGAACTGCGTAGTCCTCCTTGGCACAGAATAAGTGGTAATTCTTaGCACAAGATGTTTCACCACACCTTACGATGGCTCCTTCATTAT | + |
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Preference number: 5 (lower is better) Translates to: VELRSPPWHRISGNS*HKMFHHTLRWLLHY Trigger: ATAATGAAGGAGCCATCGTAAGGTGTGGTGAAACATCTTGTGCCAAGAATTACCACTTATTCTGTGCCAAGGAGGACTACGCAGTTCTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS GCA 90 bp | ACCTTACGATGGCTCCTTCATTATTACAAAACGAGCATATCATTGTaGTTCCTCTCCAGATCCTTTCCAGTACTGATTTCACATCAACAT | + |
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Preference number: 5 (lower is better) Translates to: TLRWLLHYYKTSISL*FLSRSFPVLISHQH Trigger: ATGTTGATGTGAAATCAGTACTGGAAAGGATCTGGAGAGGAAGCACAATGATATGCTCGTTTTGTAATAATGAAGGAGCCATCGTAAGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS-3UTR CAA 90 bp | TTTATTAAGTGTGCTAAATATTGTCAATGTGGTAGTGAGCAGAAACCCAGGGTATTAAGAAAAGGAGCTTaGACAGCTGCATCTCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: FIKCAKYCQCGSEQKPRVLRKGA*TAASLW Trigger: CCACAGAGATGCAGCTGTCAAAGCTCCTTTTCTTAA...TACCCTGGGTTTCTGCTCACTACCACATTGACAATATTTAGCACACTTAATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS TCA 90 bp | AAACGAGCATATCATTGTGCTTCCTCTCCAGATCCTTTCCAGTACTaGTTTCACATCAACATTTCTAGCTATTTTACATGGATTATGGGC | + |
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Preference number: 5 (lower is better) Translates to: KRAYHCASSPDPFQY*FHINISSYFTWIMG Trigger: GCCCATAATCCATGTAAAATAGCTAGAAATGTTGATGTGAAATCAGTACTGGAAAGGATCTGGAGAGGAAGCACAATGATATGCTCGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS CCA 90 bp | AGTACTGATTTCACATCAACATTTCTAGCTATTTTACATGGATTATaGGCCTCACATTCCACCAATCCTGATGAATACAGCAAACAGTTT | + |
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Preference number: 5 (lower is better) Translates to: STDFTSTFLAILHGL*ASHSTNPDEYSKQF Trigger: AAACTGTTTGCTGTATTCATCAGGATTGGTGGAATGTGAGGCCCATAATCCATGTAAAATAGCTAGAAATGTTGATGTGAAATCAGTACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS CCA 90 bp | CTTTGCCTTTCTTCCCATTCACAAGCTTTACTCTTGATTACTTCTTaGAATTTTCTTAGTGTGTCTTTAAATAATCCACAGCCAAACAGT | + |
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Preference number: 5 (lower is better) Translates to: LCLSSHSQALLLITS*NFLSVSLNNPQPNS Trigger: ACTGTTTGGCTGTGGATTATTTAAAGACACACTAAGAAAATTCCAAGAAGTAATCAAGAGTAAAGCTTGTGAATGGGAAGAAAGGCAAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS TCA 72 bp | CGAGAGGCTCTCCTGTCACATGTCTTTTGGATCTCATaGATTTCACCACTTTTGGCTGTGCAGGAGGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: REALLSHVFWIS*ISPLLAVQEGL Trigger: CAGGCCCTCCTGCACAGCCAAAAGTGGTGAAATTCATGAGATCCAAAAGACATGTGACAGGAGAGCCTCTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS CCA 72 bp | TCTTCCTCTTCATGCTTGGGCCATCAGCACTTTCAGTaGCCTCTTCTTGTTGTGGAGGATGTTCTGGGCAAA | + |
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Preference number: 6 (lower is better) Translates to: SSSSCLGHQHFQ*PLLVVEDVLGK Trigger: TTTGCCCAGAACATCCTCCACAACAAGAAGAGGCCACTGAAAGTGCTGATGGCCCAAGCATGAAGAGGAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS CAA 72 bp | TCTCTGTGGCCGAGAGGCTCTCCTGTCACATGTCTTTaGGATCTCATGAATTTCACCACTTTTGGCTGTGCA | + |
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Preference number: 6 (lower is better) Translates to: SLWPRGSPVTCL*DLMNFTTFGCA Trigger: TGCACAGCCAAAAGTGGTGAAATTCATGAGATCCAAAAGACATGTGACAGGAGAGCCTCTCGGCCACAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS CCA 72 bp | CGTAGTCCTCCTTGGCACAGAATAAGTGGTAATTCTTaGCACAAGATGTTTCACCACACCTTACGATGGCTC | + |
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Preference number: 6 (lower is better) Translates to: RSPPWHRISGNS*HKMFHHTLRWL Trigger: GAGCCATCGTAAGGTGTGGTGAAACATCTTGTGCCAAGAATTACCACTTATTCTGTGCCAAGGAGGACTACG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS TCA 72 bp | GATGTAGAACTTGAGCAGTCCAGGTCCCCATTTTCTTaGAATGAGCACAAGCTTTGTTGTAAGTCTGCAAGT | + |
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Preference number: 6 (lower is better) Translates to: DVELEQSRSPFS*NEHKLCCKSAS Trigger: ACTTGCAGACTTACAACAAAGCTTGTGCTCATTTCAAGAAAATGGGGACCTGGACTGCTCAAGTTCTACATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS TCA 72 bp | ATACAGCAAACAGTTTTCATGAGCAGCTATATTAGCTaGTGGTACAAAGTATATCACGCTCCAATCATGGCC | + |
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Preference number: 6 (lower is better) Translates to: IQQTVFMSSYIS*WYKVYHAPIMA Trigger: GGCCATGATTGGAGCGTGATATACTTTGTACCATCAGCTAATATAGCTGCTCATGAAAACTGTTTGCTGTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS GCA 72 bp | TGGCTCCTTCATTATTACAAAACGAGCATATCATTGTaGTTCCTCTCCAGATCCTTTCCAGTACTGATTTCA | + |
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Preference number: 6 (lower is better) Translates to: WLLHYYKTSISL*FLSRSFPVLIS Trigger: TGAAATCAGTACTGGAAAGGATCTGGAGAGGAAGCACAATGATATGCTCGTTTTGTAATAATGAAGGAGCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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| CDS TCA 72 bp | TCCACCAATCCTGATGAATACAGCAAACAGTTTTCATaGGCAGCTATATTAGCTGATGGTACAAAGTATATC | + |
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Preference number: 6 (lower is better) Translates to: STNPDEYSKQFS*AAILADGTKYI Trigger: GATATACTTTGTACCATCAGCTAATATAGCTGCTCATGAAAACTGTTTGCTGTATTCATCAGGATTGGTGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166912.3 |
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