RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PHF11B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091649

Ensembl transcript IDs: ENSMUST00000166121.4

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp GAGCAGAAATTCCAGGGTAACAGCAAGCAATGCACAGGACAGCTTCTGCTCTATGTTGCTGTCCTTGACTaGGGTGGGCAGGGTAGGCAG +
Preference number: 2 (lower is better)
Translates to: EQKFQGNSKQCTGQLLLYVAVLD*GGQGRQ
Trigger: CTGCCTACCCTGCCCACCCCAGTCAAGGACAGCAAC...ATAGAGCAGAAGCTGTCCTGTGCATTGCTTGCTGTTACCCTGGAATTTCTGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
3UTR CAA 90 bp CTAAGATTCCATTTAAGGCTGAGCAAAGCTCTGGTGTTGCTGTCCTaGACTGGGGTGGGCAGGGTAGGCAGGAAGACTTCCTCGATCCTT +
Preference number: 2 (lower is better)
Translates to: LRFHLRLSKALVLLS*TGVGRVGRKTSSIL
Trigger: AAGGATCGAGGAAGTCTTCCTGCCTACCCTGCCCACCCCAGTCAAGGACAGCAACACCAGAGCTTTGCTCAGCCTTAAATGGAATCTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
3UTR CAA 90 bp GAGAAAGCTCTAAGATTCCATTTAAGGCTGAGCAAAGCTCTGGTGTaGCTGTCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGACTTCC +
Preference number: 2 (lower is better)
Translates to: EKALRFHLRLSKALV*LSLTGVGRVGRKTS
Trigger: GGAAGTCTTCCTGCCTACCCTGCCCACCCCAGTCAAGGACAGCAACACCAGAGCTTTGCTCAGCCTTAAATGGAATCTTAGAGCTTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
3UTR-3UTR CAA 90 bp ATACTGAAAGGAGACCATGATGAGACCATCTGCAGGAGCAGCAGAAGCAAGAGACTGGTGTTGCTGTCCTaGACTGGGGTGGGCAGGGTA +
Preference number: 3 (lower is better)
Translates to: ILKGDHDETICRSSRSKRLVLLS*TGVGRV
Trigger: TACCCTGCCCACCCCAGTCAAGGACAGCAACACCAG...TCTCTTGCTTCTGCTGCTCCTGCAGATGGTCTCATCATGGTCTCCTTTCAGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
3UTR CAA 72 bp CTAAGATTCCATTTAAGGCTGAGCAAAGCTCTGGTGTaGCTGTCCTTGACTGGGGTGGGCAGGGTAGGCAGG +
Preference number: 4 (lower is better)
Translates to: LRFHLRLSKALV*LSLTGVGRVGR
Trigger: CCTGCCTACCCTGCCCACCCCAGTCAAGGACAGCAACACCAGAGCTTTGCTCAGCCTTAAATGGAATCTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS-3UTR GCA 90 bp CTGGTGTTGCTGTCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGACTTCCTCGAGTGGTAATTCTTGGTaGAGGACTGTAAATCACATC +
Preference number: 4 (lower is better)
Translates to: LVLLSLTGVGRVGRKTSSSGNSW*RTVNHI
Trigger: GATGTGATTTACAGTCCTGCACCAAGAATTACCACT...CGAGGAAGTCTTCCTGCCTACCCTGCCCACCCCAGTCAAGGACAGCAACACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS-3UTR TCA 90 bp CAGGGTAGGCAGGAAGACTTCCTCGATCCTTGGAGAACATGGAGGCCCCATCCATTTCCATCTTTTCTATaGTTGGACAGTCACCATTGG +
Preference number: 4 (lower is better)
Translates to: QGRQEDFLDPWRTWRPHPFPSFL*LDSHHW
Trigger: CCAATGGTGACTGTCCAATCATAGAAAAGATGGAAA...TGGATGGGGCCTCCATGTTCTCCAAGGATCGAGGAAGTCTTCCTGCCTACCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS-3UTR CCA 90 bp CTGAAAGGAGACCATGATGAGACCATCTGCAGGAGCAGCAGAAGCAAGAGAAAGGGGTTCTTGAGCCTCTaGAGCATGTTTTTGACAAAA +
Preference number: 4 (lower is better)
Translates to: LKGDHDETICRSSRSKRKGFLSL*SMFLTK
Trigger: TTTTGTCAAAAACATGCTCCAGAGGCTCAAGAACCC...CTTTCTCTTGCTTCTGCTGCTCCTGCAGATGGTCTCATCATGGTCTCCTTTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS-3UTR TCA 90 bp AACAGCAAGCAATGCACAGGACAGCTTCTGCTCTATGCTGATGGAGTTTTAATACGTTGTGTGGGTTCTTaGGCCTCTGGAGCATGTTTT +
Preference number: 4 (lower is better)
Translates to: NSKQCTGQLLLYADGVLIRCVGS*ASGACF
Trigger: AAAACATGCTCCAGAGGCTCAAGAACCCACACAACG...TATTAAAACTCCATCAGCATAGAGCAGAAGCTGTCCTGTGCATTGCTTGCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS-3UTR CCA 90 bp ATACTGAAAGGAGACCATGATGAGACCATCTGCAGGAGCAGCAGAAGCAAGAGAGTAAATCACATCCCATaGTGGCTCCTTTGTTTTTAC +
Preference number: 4 (lower is better)
Translates to: ILKGDHDETICRSSRSKRVNHIP*WLLCFY
Trigger: GTAAAAACAAAGGAGCCACCATGGGATGTGATTTAC...TCTCTTGCTTCTGCTGCTCCTGCAGATGGTCTCATCATGGTCTCCTTTCAGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS-3UTR CAA 90 bp TCTGGTGTTGCTGTCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGACTTCCTCACGTTGTGTGGGTTCTaGAGCCTCTGGAGCATGTTT +
Preference number: 5 (lower is better)
Translates to: SGVAVLDWGGQGRQEDFLTLCGF*SLWSMF
Trigger: AAACATGCTCCAGAGGCTCAAGAACCCACACAACGT...GAGGAAGTCTTCCTGCCTACCCTGCCCACCCCAGTCAAGGACAGCAACACCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS-3UTR CAA 90 bp CAGGGTAGGCAGGAAGACTTCCTCGATCCTTGGAGAACATGGAGGCCCCATCCAATTGGACAGTCACCATaGGGAACTGGGTTAGAGCAC +
Preference number: 5 (lower is better)
Translates to: QGRQEDFLDPWRTWRPHPIGQSP*GTGLEH
Trigger: GTGCTCTAACCCAGTTCCCAATGGTGACTGTCCAAT...TGGATGGGGCCTCCATGTTCTCCAAGGATCGAGGAAGTCTTCCTGCCTACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS-3UTR CAA 90 bp TCTGGTGTTGCTGTCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGACTTCCTCTTAAGAAAAGGAGCTTaGACAGTTGCATCACGTTGT +
Preference number: 5 (lower is better)
Translates to: SGVAVLDWGGQGRQEDFLLRKGA*TVASRC
Trigger: ACAACGTGATGCAACTGTCAAAGCTCCTTTTCTTAA...GAGGAAGTCTTCCTGCCTACCCTGCCCACCCCAGTCAAGGACAGCAACACCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS TCA 90 bp AAGGATCCTGATGTAGAACTTGAGCAGTCCAGGTCCCCATTTTCTTaGTATGAGCACAAGCTTTGTTGTAAGTCTGCAAGTGCCTCAAGC +
Preference number: 5 (lower is better)
Translates to: KDPDVELEQSRSPFS*YEHKLCCKSASASS
Trigger: GCTTGAGGCACTTGCAGACTTACAACAAAGCTTGTGCTCATATCAAGAAAATGGGGACCTGGACTGCTCAAGTTCTACATCAGGATCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS GCA 90 bp AAGTCCTGCTTCCTGGCATTTCTTAAGAAAAGGAGCTTTGACAGTTaGATCACGTTGTGTGGGTTCTTGAGCCTCTGGAGCATGTTTTTG +
Preference number: 5 (lower is better)
Translates to: KSCFLAFLKKRSFDS*ITLCGFLSLWSMFL
Trigger: CAAAAACATGCTCCAGAGGCTCAAGAACCCACACAACGTGATGCAACTGTCAAAGCTCCTTTTCTTAAGAAATGCCAGGAAGCAGGACTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS CCA 90 bp GTAGAATTGCGTGGTCTTCCATGGCACAGGATAAGTGGTAATTCTTaGTGCAGGACTGTAAATCACATCCCATGGTGGCTCCTTTGTTTT +
Preference number: 5 (lower is better)
Translates to: VELRGLPWHRISGNS*CRTVNHIPWWLLCF
Trigger: AAAACAAAGGAGCCACCATGGGATGTGATTTACAGTCCTGCACCAAGAATTACCACTTATCCTGTGCCATGGAAGACCACGCAATTCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS-3UTR CAA 90 bp ATACTGAAAGGAGACCATGATGAGACCATCTGCAGGAGCAGCAGAAGCAAGAGACCCATGGTGGCTCCTTaGTTTTTACAAAATGAGCAT +
Preference number: 5 (lower is better)
Translates to: ILKGDHDETICRSSRSKRPMVAP*FLQNEH
Trigger: ATGCTCATTTTGTAAAAACAAAGGAGCCACCATGGG...TCTCTTGCTTCTGCTGCTCCTGCAGATGGTCTCATCATGGTCTCCTTTCAGTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS GCA 90 bp TGTTGTAAGTCTGCAAGTGCCTCAAGCTGCTGCTTCATCAGCCTTTaGCTTTCTTCCCATTCACAAGCTTTACTCTTGATTACTTCTTGG +
Preference number: 5 (lower is better)
Translates to: CCKSASASSCCFISL*LSSHSQALLLITSW
Trigger: CCAAGAAGTAATCAAGAGTAAAGCTTGTGAATGGGAAGAAAGGCAAAGGCTGATGAAGCAGCAGCTTGAGGCACTTGCAGACTTACAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS-3UTR CAA 90 bp AACAGCAAGCAATGCACAGGACAGCTTCTGCTCTATGCTGATGGAGTTTTAATACTGCTTCATCAGCCTTaGCCTTTCTTCCCATTCACA +
Preference number: 5 (lower is better)
Translates to: NSKQCTGQLLLYADGVLILLHQP*PFFPFT
Trigger: TGTGAATGGGAAGAAAGGCAAAGGCTGATGAAGCAG...TATTAAAACTCCATCAGCATAGAGCAGAAGCTGTCCTGTGCATTGCTTGCTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS CCA 90 bp AAGTGCCATGATCTTCATCAACTTGTAGAATTGCGTGGTCTTCCATaGCACAGGATAAGTGGTAATTCTTGGTGCAGGACTGTAAATCAC +
Preference number: 5 (lower is better)
Translates to: KCHDLHQLVELRGLP*HRISGNSWCRTVNH
Trigger: GTGATTTACAGTCCTGCACCAAGAATTACCACTTATCCTGTGCCATGGAAGACCACGCAATTCTACAAGTTGATGAAGATCATGGCACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS GCA 90 bp GTTCTTGAGCCTCTGGAGCATGTTTTTGACAAAATAATTTGTAAGTaGCATGATCTTCATCAACTTGTAGAATTGCGTGGTCTTCCATGG +
Preference number: 5 (lower is better)
Translates to: VLEPLEHVFDKIICK*HDLHQLVELRGLPW
Trigger: CCATGGAAGACCACGCAATTCTACAAGTTGATGAAGATCATGGCACTTACAAATTATTTTGTCAAAAACATGCTCCAGAGGCTCAAGAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS TCA 90 bp GCTTCATCAGCCTTTGCCTTTCTTCCCATTCACAAGCTTTACTCTTaGTTACTTCTTGGAATTGTATTAATGTATCTTCAAACAGCCCAC +
Preference number: 5 (lower is better)
Translates to: ASSAFAFLPIHKLYS*LLLGIVLMYLQTAH
Trigger: GTGGGCTGTTTGAAGATACATTAATACAATTCCAAGAAGTAATCAAGAGTAAAGCTTGTGAATGGGAAGAAAGGCAAAGGCTGATGAAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS CCA 72 bp CGTGGTCTTCCATGGCACAGGATAAGTGGTAATTCTTaGTGCAGGACTGTAAATCACATCCCATGGTGGCTC +
Preference number: 6 (lower is better)
Translates to: RGLPWHRISGNS*CRTVNHIPWWL
Trigger: GAGCCACCATGGGATGTGATTTACAGTCCTGCACCAAGAATTACCACTTATCCTGTGCCATGGAAGACCACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS CAA 72 bp GTCTGCAAGTGCCTCAAGCTGCTGCTTCATCAGCCTTaGCCTTTCTTCCCATTCACAAGCTTTACTCTTGAT +
Preference number: 6 (lower is better)
Translates to: VCKCLKLLLHQP*PFFPFTSFTLD
Trigger: ATCAAGAGTAAAGCTTGTGAATGGGAAGAAAGGCAAAGGCTGATGAAGCAGCAGCTTGAGGCACTTGCAGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS GCA 72 bp TCTGCAAGTGCCTCAAGCTGCTGCTTCATCAGCCTTTaGCTTTCTTCCCATTCACAAGCTTTACTCTTGATT +
Preference number: 6 (lower is better)
Translates to: SASASSCCFISL*LSSHSQALLLI
Trigger: AATCAAGAGTAAAGCTTGTGAATGGGAAGAAAGGCAAAGGCTGATGAAGCAGCAGCTTGAGGCACTTGCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS CCA 72 bp GATCTTCATCAACTTGTAGAATTGCGTGGTCTTCCATaGCACAGGATAAGTGGTAATTCTTGGTGCAGGACT +
Preference number: 6 (lower is better)
Translates to: DLHQLVELRGLP*HRISGNSWCRT
Trigger: AGTCCTGCACCAAGAATTACCACTTATCCTGTGCCATGGAAGACCACGCAATTCTACAAGTTGATGAAGATC
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS CAA 72 bp ATTTGTAAGTGCCATGATCTTCATCAACTTGTAGAATaGCGTGGTCTTCCATGGCACAGGATAAGTGGTAAT +
Preference number: 6 (lower is better)
Translates to: ICKCHDLHQLVE*RGLPWHRISGN
Trigger: ATTACCACTTATCCTGTGCCATGGAAGACCACGCAATTCTACAAGTTGATGAAGATCATGGCACTTACAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS CAA 90 bp TGCTTCATCAGCCTTTGCCTTTCTTCCCATTCACAAGCTTTACTCTaGATTACTTCTTGGAATTGTATTAATGTATCTTCAAACAGCCCA +
Preference number: 6 (lower is better)
Translates to: CFISLCLSSHSQALL*ITSWNCINVSSNSP
Trigger: TGGGCTGTTTGAAGATACATTAATACAATTCCAAGAAGTAATCAAGAGTAAAGCTTGTGAATGGGAAGAAAGGCAAAGGCTGATGAAGCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS TCA 72 bp TCCACCAGTCCTGATGAATACAGCAAACAGTTTTCATaGGCAACTATATTTCCTGATGGTGAAAAGTATATT +
Preference number: 6 (lower is better)
Translates to: STSPDEYSKQFS*ATIFPDGEKYI
Trigger: AATATACTTTTCACCATCAGGAAATATAGTTGCTCATGAAAACTGTTTGCTGTATTCATCAGGACTGGTGGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4
CDS CAA 72 bp AGCCTTTGCCTTTCTTCCCATTCACAAGCTTTACTCTaGATTACTTCTTGGAATTGTATTAATGTATCTTCA +
Preference number: 6 (lower is better)
Translates to: SLCLSSHSQALL*ITSWNCINVSS
Trigger: TGAAGATACATTAATACAATTCCAAGAAGTAATCAAGAGTAAAGCTTGTGAATGGGAAGAAAGGCAAAGGCT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166121.4