RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PHF11A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044703

Ensembl transcript IDs: ENSMUST00000062307.5

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGACTTCCTCGATCCTTGGAGAACATaGAGGCCCCATCCAGTTTTC +
Preference number: 2 (lower is better)
Translates to: SGVAALDWGGQGRQEDFLDPWRT*RPHPVF
Trigger: GAAAACTGGATGGGGCCTCCATGTTCTCCAAGGATC...GAGGAAGTCTTCCTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
3UTR-3UTR CCA 90 bp AGTGGAGACCATGATGAGGCCATCTGTAGGAGCAGCAGAAGCAAGAGAAAGCTCGACTTCCTCGATCCTTaGAGAACATGGAGGCCCCAT +
Preference number: 2 (lower is better)
Translates to: SGDHDEAICRSSRSKRKLDFLDP*RTWRPH
Trigger: ATGGGGCCTCCATGTTCTCCAAGGATCGAGGAAGTC...GAGCTTTCTCTTGCTTCTGCTGCTCCTACAGATGGCCTCATCATGGTCTCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
3UTR-3UTR TCA 90 bp ATACTGAGTGGAGACCATGATGAGGCCATCTGTAGGAGCAGCAGAAGCAAGAGAGGTATGGAGCATGGATaGGCAGTAGCAGGTCAGAGT +
Preference number: 2 (lower is better)
Translates to: ILSGDHDEAICRSSRSKRGMEHG*AVAGQS
Trigger: ACTCTGACCTGCTACTGCTCATCCATGCTCCATACC...TCTCTTGCTTCTGCTGCTCCTACAGATGGCCTCATCATGGTCTCCACTCAGTAT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
3UTR-3UTR TCA 90 bp GAAAGCTCTAAGATTCCATTTAAGGCTGAGCAAAGCTCTGGTGTTGCTGCCCTTCCCATCCAGTTTTCCTaGGGAGCAGCTTTTACTATC +
Preference number: 2 (lower is better)
Translates to: ESSKIPFKAEQSSGVAALPIQFS*GAAFTI
Trigger: GATAGTAAAAGCTGCTCCTCAGGAAAACTGGATGGG...AAGGGCAGCAACACCAGAGCTTTGCTCAGCCTTAAATGGAATCTTAGAGCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
3UTR-3UTR CAA 90 bp AAAGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGACTAGTAGCAGGTCAGAGTaGGAGGACACTGTGGATCTG +
Preference number: 3 (lower is better)
Translates to: KALVLLPLTGVGRVGRKTSSRSE*EDTVDL
Trigger: CAGATCCACAGTGTCCTCCAACTCTGACCTGCTACT...AGTCTTCCTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS-3UTR CCA 90 bp CATTTAAGGCTGAGCAAAGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGTGGCATCTGACCTGGTaGTCCTCAGGAGGTAGCAAG +
Preference number: 4 (lower is better)
Translates to: HLRLSKALVLLPLTGVGRWHLTW*SSGGSK
Trigger: CTTGCTACCTCCTGAGGACCACCAGGTCAGATGCCA...CCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTTGCTCAGCCTTAAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS-3UTR GCA 90 bp CAGGAAGACTTCCTCGATCCTTGGAGAACATGGAGGCCCCATCCAGTTTTCCTGTCTCCTGAGCCTGCTTaGACTTCAGGAGACTCCTGG +
Preference number: 4 (lower is better)
Translates to: QEDFLDPWRTWRPHPVFLSPEPA*TSGDSW
Trigger: CCAGGAGTCTCCTGAAGTGCAAGCAGGCTCAGGAGA...CAGGAAAACTGGATGGGGCCTCCATGTTCTCCAAGGATCGAGGAAGTCTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS-3UTR GCA 90 bp AAAGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGACTTGCTTCATCAGCCTTTaGCTTTCTTCCCATTCACAA +
Preference number: 4 (lower is better)
Translates to: KALVLLPLTGVGRVGRKTCFISL*LSSHSQ
Trigger: TTGTGAATGGGAAGAAAGGCAAAGGCTGATGAAGCA...AGTCTTCCTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS-3UTR CCA 90 bp CCATTTAAGGCTGAGCAAAGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGCATCTTCTCTATGATTaGACAGTCACCATTGGGAAC +
Preference number: 4 (lower is better)
Translates to: PFKAEQSSGVAALDWGGQHLLYD*TVTIGN
Trigger: GTTCCCAATGGTGACTGTCCAATCATAGAGAAGATG...CTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTTGCTCAGCCTTAAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS-3UTR CCA 90 bp GAAAGCTCTAAGATTCCATTTAAGGCTGAGCAAAGCTCTGGTGTTGCTGCCCTTTCCTGGCATCTGACCTaGTGGTCCTCAGGAGGTAGC +
Preference number: 4 (lower is better)
Translates to: ESSKIPFKAEQSSGVAALSWHLT*WSSGGS
Trigger: GCTACCTCCTGAGGACCACCAGGTCAGATGCCAGGA...AAGGGCAGCAACACCAGAGCTTTGCTCAGCCTTAAATGGAATCTTAGAGCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS-3UTR GCA 90 bp AAAGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGGTAGGCAGGAAGACTAGTGGTAATTCTTGGTaGAGGACTGTAAATCATATC +
Preference number: 4 (lower is better)
Translates to: KALVLLPLTGVGRVGRKTSGNSW*RTVNHI
Trigger: GATATGATTTACAGTCCTGCACCAAGAATTACCACT...AGTCTTCCTGCCTACCCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS-3UTR GCA 90 bp CCTGAGGAGCAGCTTTTACTATCAGGGGAAAGCAGGACAAGTGAGATGAGAAGAGCAAGTGCCTCAAGCTaGTGCTTCATCAGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: PEEQLLLSGESRTSEMRRASASS*CFISLC
Trigger: GCAAAGGCTGATGAAGCAGCAGCTTGAGGCACTTGC...TCTTCTCATCTCACTTGTCCTGCTTTCCCCTGATAGTAAAAGCTGCTCCTCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS-3UTR GCA 90 bp CATTTAAGGCTGAGCAAAGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGAACATTAAGAAGTCCTaGTTCCTGGCATTTCTTAAG +
Preference number: 4 (lower is better)
Translates to: HLRLSKALVLLPLTGVGRNIKKS*FLAFLK
Trigger: CTTAAGAAATGCCAGGAAGCAGGACTTCTTAATGTT...CCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTTGCTCAGCCTTAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS-3UTR CCA 90 bp CATTTAAGGCTGAGCAAAGCTCTGGTGTTGCTGCCCTTGACTGGGGTGGGCAGGAATCATATCCCATGGTaGCTCCTTTGTTTTTACAAA +
Preference number: 4 (lower is better)
Translates to: HLRLSKALVLLPLTGVGRNHIPW*LLCFYK
Trigger: TTTGTAAAAACAAAGGAGCCACCATGGGATATGATT...CCTGCCCACCCCAGTCAAGGGCAGCAACACCAGAGCTTTGCTCAGCCTTAAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS-3UTR CCA 90 bp ATACTGAGTGGAGACCATGATGAGGCCATCTGTAGGAGCAGCAGAAGCAAGAGAGGGTTCTTGACCCTCTaGAGCATGTTTTTGACAAAA +
Preference number: 4 (lower is better)
Translates to: ILSGDHDEAICRSSRSKRGFLTL*SMFLTK
Trigger: TTTTGTCAAAAACATGCTCCAGAGGGTCAAGAACCC...TCTCTTGCTTCTGCTGCTCCTACAGATGGCCTCATCATGGTCTCCACTCAGTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS-3UTR TCA 90 bp CCTGAGGAGCAGCTTTTACTATCAGGGGAAAGCAGGACAAGTGAGATGAGAAGATTTCCATCTTCTCTATaGTTGGACAGTCACCATTGG +
Preference number: 4 (lower is better)
Translates to: PEEQLLLSGESRTSEMRRFPSSL*LDSHHW
Trigger: CCAATGGTGACTGTCCAATCATAGAGAAGATGGAAA...TCTTCTCATCTCACTTGTCCTGCTTTCCCCTGATAGTAAAAGCTGCTCCTCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS GCA 90 bp AAGTCCTGCTTCCTGGCATTTCTTAAGGAAAGGAGCTTTGACAGCTaGATCACGTTGTGTGGGTTCTTGACCCTCTGGAGCATGTTTTTG +
Preference number: 5 (lower is better)
Translates to: KSCFLAFLKERSFDS*ITLCGFLTLWSMFL
Trigger: CAAAAACATGCTCCAGAGGGTCAAGAACCCACACAACGTGATGCAGCTGTCAAAGCTCCTTTCCTTAAGAAATGCCAGGAAGCAGGACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS CCA 90 bp GTAGAATTGCGTGGTCTTCCATGGCACAGGATAAGTGGTAATTCTTaGTGCAGGACTGTAAATCATATCCCATGGTGGCTCCTTTGTTTT +
Preference number: 5 (lower is better)
Translates to: VELRGLPWHRISGNS*CRTVNHIPWWLLCF
Trigger: AAAACAAAGGAGCCACCATGGGATATGATTTACAGTCCTGCACCAAGAATTACCACTTATCCTGTGCCATGGAAGACCACGCAATTCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS GCA 90 bp TGTTGTAAGTCTGCAAGTGCCTCAAGCTGCTGCTTCATCAGCCTTTaGCTTTCTTCCCATTCACAAGCTTTACTATTGATTACTTCTTGG +
Preference number: 5 (lower is better)
Translates to: CCKSASASSCCFISL*LSSHSQALLLITSW
Trigger: CCAAGAAGTAATCAATAGTAAAGCTTGTGAATGGGAAGAAAGGCAAAGGCTGATGAAGCAGCAGCTTGAGGCACTTGCAGACTTACAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS CCA 90 bp AAGTGCCATGATCTTCATCAACTTGTAGAATTGCGTGGTCTTCCATaGCACAGGATAAGTGGTAATTCTTGGTGCAGGACTGTAAATCAT +
Preference number: 5 (lower is better)
Translates to: KCHDLHQLVELRGLP*HRISGNSWCRTVNH
Trigger: ATGATTTACAGTCCTGCACCAAGAATTACCACTTATCCTGTGCCATGGAAGACCACGCAATTCTACAAGTTGATGAAGATCATGGCACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS GCA 90 bp GTTCTTGACCCTCTGGAGCATGTTTTTGACAAAATAATTTGTAAGTaGCATGATCTTCATCAACTTGTAGAATTGCGTGGTCTTCCATGG +
Preference number: 5 (lower is better)
Translates to: VLDPLEHVFDKIICK*HDLHQLVELRGLPW
Trigger: CCATGGAAGACCACGCAATTCTACAAGTTGATGAAGATCATGGCACTTACAAATTATTTTGTCAAAAACATGCTCCAGAGGGTCAAGAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS TCA 72 bp CTGAGCCTGCTTGCACTTCAGGAGACTCCTGGCATCTaGCCTGGTGGTCCTCAGGAGGTAGCAAGGATCCTG +
Preference number: 6 (lower is better)
Translates to: LSLLALQETPGI*PGGPQEVARIL
Trigger: CAGGATCCTTGCTACCTCCTGAGGACCACCAGGTCAGATGCCAGGAGTCTCCTGAAGTGCAAGCAGGCTCAG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS CCA 72 bp CCTGCTTGCACTTCAGGAGACTCCTGGCATCTGACCTaGTGGTCCTCAGGAGGTAGCAAGGATCCTGATGTA +
Preference number: 6 (lower is better)
Translates to: PACTSGDSWHLT*WSSGGSKDPDV
Trigger: TACATCAGGATCCTTGCTACCTCCTGAGGACCACCAGGTCAGATGCCAGGAGTCTCCTGAAGTGCAAGCAGG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS CCA 72 bp GCTTGCACTTCAGGAGACTCCTGGCATCTGACCTGGTaGTCCTCAGGAGGTAGCAAGGATCCTGATGTAGAA +
Preference number: 6 (lower is better)
Translates to: ACTSGDSWHLTW*SSGGSKDPDVE
Trigger: TTCTACATCAGGATCCTTGCTACCTCCTGAGGACCACCAGGTCAGATGCCAGGAGTCTCCTGAAGTGCAAGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS CCA 72 bp CGTGGTCTTCCATGGCACAGGATAAGTGGTAATTCTTaGTGCAGGACTGTAAATCATATCCCATGGTGGCTC +
Preference number: 6 (lower is better)
Translates to: RGLPWHRISGNS*CRTVNHIPWWL
Trigger: GAGCCACCATGGGATATGATTTACAGTCCTGCACCAAGAATTACCACTTATCCTGTGCCATGGAAGACCACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS CAA 72 bp GTCTGCAAGTGCCTCAAGCTGCTGCTTCATCAGCCTTaGCCTTTCTTCCCATTCACAAGCTTTACTATTGAT +
Preference number: 6 (lower is better)
Translates to: VCKCLKLLLHQP*PFFPFTSFTID
Trigger: ATCAATAGTAAAGCTTGTGAATGGGAAGAAAGGCAAAGGCTGATGAAGCAGCAGCTTGAGGCACTTGCAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS GCA 72 bp TCTGCAAGTGCCTCAAGCTGCTGCTTCATCAGCCTTTaGCTTTCTTCCCATTCACAAGCTTTACTATTGATT +
Preference number: 6 (lower is better)
Translates to: SASASSCCFISL*LSSHSQALLLI
Trigger: AATCAATAGTAAAGCTTGTGAATGGGAAGAAAGGCAAAGGCTGATGAAGCAGCAGCTTGAGGCACTTGCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS CAA 90 bp GACAAAATAATTTGTAAGTGCCATGATCTTCATCAACTTGTAGAATaGCGTGGTCTTCCATGGCACAGGATAAGTGGTAATTCTTGGTGC +
Preference number: 6 (lower is better)
Translates to: DKIICKCHDLHQLVE*RGLPWHRISGNSWC
Trigger: GCACCAAGAATTACCACTTATCCTGTGCCATGGAAGACCACGCAATTCTACAAGTTGATGAAGATCATGGCACTTACAAATTATTTTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS CAA 90 bp TGCTTCATCAGCCTTTGCCTTTCTTCCCATTCACAAGCTTTACTATaGATTACTTCTTGGAATTTTCTTAGTGTGTCTCCAAACAATCCA +
Preference number: 6 (lower is better)
Translates to: CFISLCLSSHSQALL*ITSWNFLSVSPNNP
Trigger: TGGATTGTTTGGAGACACACTAAGAAAATTCCAAGAAGTAATCAATAGTAAAGCTTGTGAATGGGAAGAAAGGCAAAGGCTGATGAAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS TCA 72 bp TCCACCAGTCCTGATGAATACAGCAAACAGTTTTCATaGGCAACTATATTCGCTGATGGTGAAAAGTATATT +
Preference number: 6 (lower is better)
Translates to: STSPDEYSKQFS*ATIFADGEKYI
Trigger: AATATACTTTTCACCATCAGCGAATATAGTTGCTCATGAAAACTGTTTGCTGTATTCATCAGGACTGGTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5
CDS CAA 72 bp AGCCTTTGCCTTTCTTCCCATTCACAAGCTTTACTATaGATTACTTCTTGGAATTTTCTTAGTGTGTCTCCA +
Preference number: 6 (lower is better)
Translates to: SLCLSSHSQALL*ITSWNFLSVSP
Trigger: TGGAGACACACTAAGAAAATTCCAAGAAGTAATCAATAGTAAAGCTTGTGAATGGGAAGAAAGGCAAAGGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062307.5