Pregenerated sensors for PHB2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004264Ensembl transcript IDs: ENSMUST00000004375.16, ENSMUST00000130279.2, ENSMUST00000147974.8
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GCTCAAGGCTGTAGGAAATCACGGAGAAATCACATTGTCCCACCCCGCTTCCCAAAGGAGGAAAGCCTCTaGAAGGGCTGGTCTCAGTCT | + |
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Preference number: 2 (lower is better) Translates to: AQGCRKSRRNHIVPPRFPKEESL*KGWSQS Trigger: AGACTGAGACCAGCCCTTTCAGAGGCTTTCCTCCTT...TGGGAAGCGGGGTGGGACAATGTGATTTCTCCGTGATTTCCTACAGCCTTGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| 3UTR-3UTR GCA 90 bp | TGGTTATCTCCCCCACTCTGGGAGAGGCTCAAGGCTGTAGGAAATCACGGAGAACAAGCTGGACAAGTGTaGCAACTTCTCTGGTGGTGG | + |
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Preference number: 2 (lower is better) Translates to: WLSPPLWERLKAVGNHGEQAGQV*QLLWWW Trigger: CCACCACCAGAGAAGTTGGCACACTTGTCCAGCTTG...TTCTCCGTGATTTCCTACAGCCTTGAGCCTCTCCCAGAGTGGGGGAGATAACCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR CCA 90 bp | ATGCCTGGGGCAGGGTGGGCTGTGCTTGACCCCCGAGCTGGCTCCTCCAAGCTGGGAGCTCCTGGGCATTaGGTCGGGACAGCACACGCA | + |
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Preference number: 4 (lower is better) Translates to: MPGAGWAVLDPRAGSSKLGAPGH*VGTAHA Trigger: TGCGTGTGCTGTCCCGACCCAATGCCCAGGAGCTCC...CAGCTTGGAGGAGCCAGCTCGGGGGTCAAGCACAGCCCACCCTGCCCCAGGCAT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR TCA 90 bp | CTGGGGCAGGGTGGGCTGTGCTTGACCCCCGAGCTGGCTCCTCCAAGCTGGACAATCAACAGGGACACCTaGGCCCGCTGGGTGATCAGC | + |
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Preference number: 4 (lower is better) Translates to: LGQGGLCLTPELAPPSWTINRDT*ARWVIS Trigger: GCTGATCACCCAGCGGGCTCAGGTGTCCCTGTTGAT...TGTCCAGCTTGGAGGAGCCAGCTCGGGGGTCAAGCACAGCCCACCCTGCCCCAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR CCA 90 bp | ATGATGCCTGGGGCAGGGTGGGCTGTGCTTGACCCCCGAGCTGGCTCCTCCAAGCTTCTCCAAGCATCTTaGCAGCCTCCGCCTCCCCCT | + |
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Preference number: 4 (lower is better) Translates to: MMPGAGWAVLDPRAGSSKLLQAS*QPPPPP Trigger: AGGGGGAGGCGGAGGCTGCCAAGATGCTTGGAGAAG...CTTGGAGGAGCCAGCTCGGGGGTCAAGCACAGCCCACCCTGCCCCAGGCATCAT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR GCA 90 bp | ATGATGCCTGGGGCAGGGTGGGCTGTGCTTGACCCCCGAGCTGGCTCCTCCAAGGCCTCCCCCTCAGCCTaGACAATCTTCTGTCGCTGT | + |
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Preference number: 4 (lower is better) Translates to: MMPGAGWAVLDPRAGSSKASPSA*TIFCRC Trigger: ACAGCGACAGAAGATTGTGCAGGCTGAGGGGGAGGC...CTTGGAGGAGCCAGCTCGGGGGTCAAGCACAGCCCACCCTGCCCCAGGCATCAT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR TCA 90 bp | CTGGGGCAGGGTGGGCTGTGCTTGACCCCCGAGCTGGCTCCTCCAAGCTGGACACAAGGTTGTCAGCTGTaGGATAGATTCGGTTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: LGQGGLCLTPELAPPSWTQGCQL*DRFGSV Trigger: CACAGAACCGAATCTATCTCACAGCTGACAACCTTG...TGTCCAGCTTGGAGGAGCCAGCTCGGGGGTCAAGCACAGCCCACCCTGCCCCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR GCA 90 bp | AAAGTCCATCACATGATGCCTGGGGCAGGGTGGGCTGTGCTTGACCCCCGAGCTTCCTGCTGGGCCACTTaGTTGGCTTCTACAGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: KVHHMMPGAGWAVLDPRASCWAT*LASTAA Trigger: AGCTGCTGTAGAAGCCAAGCAAGTGGCCCAGCAGGA...AGCTCGGGGGTCAAGCACAGCCCACCCTGCCCCAGGCATCATGTGATGGACTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR GCA 90 bp | TGGTTATCTCCCCCACTCTGGGAGAGGCTCAAGGCTGTAGGAAATCACGGAGAAGCCCGCTGGGCTTCCTaGTGGGCCACTTGCTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: WLSPPLWERLKAVGNHGEARWAS*WATCLA Trigger: AGCCAAGCAAGTGGCCCAGCAGGAAGCCCAGCGGGC...TTCTCCGTGATTTCCTACAGCCTTGAGCCTCTCCCAGAGTGGGGGAGATAACCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR GCA 90 bp | ATGATGCCTGGGGCAGGGTGGGCTGTGCTTGACCCCCGAGCTGGCTCCTCCAAGTTCTGTCGCTGTTCCTaGTTCGCTTTCTCCACCAAA | + |
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Preference number: 4 (lower is better) Translates to: MMPGAGWAVLDPRAGSSKFCRCS*FAFSTK Trigger: TTTGGTGGAGAAAGCGAAGCAGGAACAGCGACAGAA...CTTGGAGGAGCCAGCTCGGGGGTCAAGCACAGCCCACCCTGCCCCAGGCATCAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR CCA 90 bp | AAAGTCCATCACATGATGCCTGGGGCAGGGTGGGCTGTGCTTGACCCCCGAGCTGCTGGGCCACTTGCTTaGCTTCTACAGCAGCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: KVHHMMPGAGWAVLDPRAAGPLA*LLQQLC Trigger: ACACAGCTGCTGTAGAAGCCAAGCAAGTGGCCCAGC...AGCTCGGGGGTCAAGCACAGCCCACCCTGCCCCAGGCATCATGTGATGGACTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR CCA 90 bp | GTGGTTATCTCCCCCACTCTGGGAGAGGCTCAAGGCTGTAGGAAATCACGGAGAGACGCTGGTACATGCTaGGGAGCTCCTGGGCATTGG | + |
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Preference number: 4 (lower is better) Translates to: VVISPTLGEAQGCRKSRRDAGTC*GAPGHW Trigger: CCAATGCCCAGGAGCTCCCCAGCATGTACCAGCGTC...TCTCCGTGATTTCCTACAGCCTTGAGCCTCTCCCAGAGTGGGGGAGATAACCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR GCA 90 bp | GTGGTTATCTCCCCCACTCTGGGAGAGGCTCAAGGCTGTAGGAAATCACGGAGACTAGACGCTGGTACATaGTGGGGAGCTCCTGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: VVISPTLGEAQGCRKSRRLDAGT*WGAPGH Trigger: ATGCCCAGGAGCTCCCCAGCATGTACCAGCGTCTAG...TCTCCGTGATTTCCTACAGCCTTGAGCCTCTCCCAGAGTGGGGGAGATAACCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR CCA 90 bp | GCTCAAGGCTGTAGGAAATCACGGAGAAATCACATTGTCCCACCCCGCTTCCCATCCAGCCCTAGACGCTaGTACATGCTGGGGAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: AQGCRKSRRNHIVPPRFPSSPRR*YMLGSS Trigger: GGAGCTCCCCAGCATGTACCAGCGTCTAGGGCTGGA...TGGGAAGCGGGGTGGGACAATGTGATTTCTCCGTGATTTCCTACAGCCTTGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR CCA 90 bp | CTCAAGGCTGTAGGAAATCACGGAGAAATCACATTGTCCCACCCCGCTTCCCAGAAAAACTGGGCCCGCTaGGCTTCCTGCTGGGCCACT | + |
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Preference number: 4 (lower is better) Translates to: LKAVGNHGEITLSHPASQKNWAR*ASCWAT Trigger: AGTGGCCCAGCAGGAAGCCCAGCGGGCCCAGTTTTT...CTGGGAAGCGGGGTGGGACAATGTGATTTCTCCGTGATTTCCTACAGCCTTGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR CCA 90 bp | TGGTTATCTCCCCCACTCTGGGAGAGGCTCAAGGCTGTAGGAAATCACGGAGAATTCTCCACCAAAAACTaGGCCCGCTGGGCTTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: WLSPPLWERLKAVGNHGEFSTKN*ARWASC Trigger: GCAGGAAGCCCAGCGGGCCCAGTTTTTGGTGGAGAA...TTCTCCGTGATTTCCTACAGCCTTGAGCCTCTCCCAGAGTGGGGGAGATAACCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR TCA 90 bp | GTGGTTATCTCCCCCACTCTGGGAGAGGCTCAAGGCTGTAGGAAATCACGGAGACCCGAATGTCATAGATaGTGGGGTACTGGAACCAGG | + |
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Preference number: 4 (lower is better) Translates to: VVISPTLGEAQGCRKSRRPECHR*WGTGTR Trigger: CCTGGTTCCAGTACCCCATCATCTATGACATTCGGG...TCTCCGTGATTTCCTACAGCCTTGAGCCTCTCCCAGAGTGGGGGAGATAACCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR CCA 90 bp | CTTAATCCAAGAGGGCAGATACAGAAAAGTCCATCACATGATGCCTGGGGCAGGCCATCTGCAGGTCTTTaGAGCCTGTGGGGGAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: LNPRGQIQKSPSHDAWGRPSAGL*SLWGRR Trigger: TCTCCTCCCCCACAGGCTCCAAAGACCTGCAGATGG...CCTGCCCCAGGCATCATGTGATGGACTTTTCTGTATCTGCCCTCTTGGATTAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR GCA 90 bp | GCTCAAGGCTGTAGGAAATCACGGAGAAATCACATTGTCCCACCCCGCTTCCCAGAGATGTTCACCATCTaGAGGTCTTTGGAGCCTGTG | + |
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Preference number: 4 (lower is better) Translates to: AQGCRKSRRNHIVPPRFPEMFTI*RSLEPV Trigger: CACAGGCTCCAAAGACCTGCAGATGGTGAACATCTC...TGGGAAGCGGGGTGGGACAATGTGATTTCTCCGTGATTTCCTACAGCCTTGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR TCA 90 bp | CTGGTCTCAGTCTTCCTTAATCCAAGAGGGCAGATACAGAAAAGTCCATCACATCAGGGGATCCTGAAGTaGAGGCCTTCGGCCAGGATC | + |
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Preference number: 4 (lower is better) Translates to: LVSVFLNPRGQIQKSPSHQGILK*RPSARI Trigger: GATCCTGGCCGAAGGCCTTCACTTCAGGATCCCCTG...ATGTGATGGACTTTTCTGTATCTGCCCTCTTGGATTAAGGAAGACTGAGACCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR TCA 90 bp | CTTAATCCAAGAGGGCAGATACAGAAAAGTCCATCACATGATGCCTGGGGCAGGAAAAAGATGGCTCTATaGCCGCCTTCCACGGTGAAC | + |
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Preference number: 4 (lower is better) Translates to: LNPRGQIQKSPSHDAWGRKKMAL*PPSTVN Trigger: GTTCACCGTGGAAGGCGGTCATAGAGCCATCTTTTT...CCTGCCCCAGGCATCATGTGATGGACTTTTCTGTATCTGCCCTCTTGGATTAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR TCA 90 bp | TGGTTATCTCCCCCACTCTGGGAGAGGCTCAAGGCTGTAGGAAATCACGGAGAAATAGATTCGGTTCTGTaGTGTGGCGATCGTTTTAGA | + |
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Preference number: 4 (lower is better) Translates to: WLSPPLWERLKAVGNHGEIDSVL*CGDRFR Trigger: TCTAAAACGATCGCCACATCACAGAACCGAATCTAT...TTCTCCGTGATTTCCTACAGCCTTGAGCCTCTCCCAGAGTGGGGGAGATAACCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR GCA 90 bp | GTTATCTCCCCCACTCTGGGAGAGGCTCAAGGCTGTAGGAAATCACGGAGAAATTATAGCCAGGATTCTTaGTCAGTGCTTCTCCAAGCA | + |
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Preference number: 4 (lower is better) Translates to: VISPTLGEAQGCRKSRRNYSQDS*SVLLQA Trigger: TGCTTGGAGAAGCACTGAGCAAGAATCCTGGCTATA...ATTTCTCCGTGATTTCCTACAGCCTTGAGCCTCTCCCAGAGTGGGGGAGATAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR CAA 90 bp | AAAGTCCATCACATGATGCCTGGGGCAGGGTGGGCTGTGCTTGACCCCCGAGCTGGGAGCTCCTGGGCATaGGGTCGGGACAGCACACGC | + |
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Preference number: 5 (lower is better) Translates to: KVHHMMPGAGWAVLDPRAGSSWA*GRDSTR Trigger: GCGTGTGCTGTCCCGACCCAATGCCCAGGAGCTCCC...AGCTCGGGGGTCAAGCACAGCCCACCCTGCCCCAGGCATCATGTGATGGACTTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR CAA 90 bp | CTGGGGCAGGGTGGGCTGTGCTTGACCCCCGAGCTGGCTCCTCCAAGCTGGACATGCTGGGCCACTTGCTaGGCTTCTACAGCAGCTGTG | + |
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Preference number: 5 (lower is better) Translates to: LGQGGLCLTPELAPPSWTCWATC*ASTAAV Trigger: CACAGCTGCTGTAGAAGCCAAGCAAGTGGCCCAGCA...TGTCCAGCTTGGAGGAGCCAGCTCGGGGGTCAAGCACAGCCCACCCTGCCCCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR CAA 90 bp | CTGGGGCAGGGTGGGCTGTGCTTGACCCCCGAGCTGGCTCCTCCAAGCTGGACATTCCTGCTGGGCCACTaGCTTGGCTTCTACAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LGQGGLCLTPELAPPSWTFLLGH*LGFYSS Trigger: GCTGCTGTAGAAGCCAAGCAAGTGGCCCAGCAGGAA...TGTCCAGCTTGGAGGAGCCAGCTCGGGGGTCAAGCACAGCCCACCCTGCCCCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR CAA 90 bp | TGGTTATCTCCCCCACTCTGGGAGAGGCTCAAGGCTGTAGGAAATCACGGAGAAACCATCTGCAGGTCTTaGGAGCCTGTGGGGGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: WLSPPLWERLKAVGNHGETICRS*EPVGEE Trigger: CTCCTCCCCCACAGGCTCCAAAGACCTGCAGATGGT...TTCTCCGTGATTTCCTACAGCCTTGAGCCTCTCCCAGAGTGGGGGAGATAACCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR CAA 90 bp | GTTATCTCCCCCACTCTGGGAGAGGCTCAAGGCTGTAGGAAATCACGGAGAAATTTGGCCACCACACTCTaGAGCACCTCATTAACAATG | + |
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Preference number: 5 (lower is better) Translates to: VISPTLGEAQGCRKSRRNLATTL*STSLTM Trigger: CATTGTTAATGAGGTGCTCAAGAGTGTGGTGGCCAA...ATTTCTCCGTGATTTCCTACAGCCTTGAGCCTCTCCCAGAGTGGGGGAGATAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS-3UTR CAA 90 bp | GTCTCAGTCTTCCTTAATCCAAGAGGGCAGATACAGAAAAGTCCATCACATGATATGAGGCTGAAGTCCTaGGCGCGCTCTGTCAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: VSVFLNPRGQIQKSPSHDMRLKS*ARSVSS Trigger: AGAGCTGACAGAGCGCGCCAAGGACTTCAGCCTCAT...ATCATGTGATGGACTTTTCTGTATCTGCCCTCTTGGATTAAGGAAGACTGAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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| CDS CCA 72 bp | TCCAGCCCTAGACGCTGGTACATGCTGGGGAGCTCCTaGGCATTGGGTCGGGACAGCACACGCAGGGAGATG | + |
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Preference number: 6 (lower is better) Translates to: SSPRRWYMLGSS*ALGRDSTRREM Trigger: CATCTCCCTGCGTGTGCTGTCCCGACCCAATGCCCAGGAGCTCCCCAGCATGTACCAGCGTCTAGGGCTGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000004375.16 ENSMUST00000130279.2 ENSMUST00000147974.8 |
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| CDS GCA 72 bp | TCCCCCTCAGCCTGCACAATCTTCTGTCGCTGTTCCTaGTTCGCTTTCTCCACCAAAAACTGGGCCCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: SPSACTIFCRCS*FAFSTKNWARW Trigger: CCAGCGGGCCCAGTTTTTGGTGGAGAAAGCGAAGCAGGAACAGCGACAGAAGATTGTGCAGGCTGAGGGGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000004375.16 |
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