Pregenerated sensors for PHB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038845Ensembl transcript IDs: ENSMUST00000125172.8
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTTCGGAGCGCTGGCCCACAGCCCTCGGGAAGAAAGGGCAATCTCTaGGAGAGAGGGAGCGGGAAGGCAGGCGCACGTGTCCTTGGCAGG | + |
|
Preference number: 1 (lower is better) Translates to: LRSAGPQPSGRKGNL*ERGSGKAGARVLGR Trigger: CCTGCCAAGGACACGTGCGCCTGCCTTCCCGCTCCCTCTCTCTCAGAGATTGCCCTTTCTTCCCGAGGGCTGTGGGCCAGCGCTCCGAAG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR GCA 90 bp | CCTATGCAGGCTGCCAGCAGGCTGCCCATCCACTACACACTGCCCTaGCTTTCTTCTGCCAACTGCCCGCGCCTAGGGTGGAAGGCCAGT | + |
|
Preference number: 1 (lower is better) Translates to: PMQAASRLPIHYTLP*LSSANCPRLGWKAS Trigger: ACTGGCCTTCCACCCTAGGCGCGGGCAGTTGGCAGAAGAAAGGCAGGGCAGTGTGTAGTGGATGGGCAGCCTGCTGGCAGCCTGCATAGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR GCA 90 bp | AGGCTGCCCATCCACTACACACTGCCCTGCCTTTCTTCTGCCAACTaGCCGCGCCTAGGGTGGAAGGCCAGTCTGCAGAGGCACTTGGCA | + |
|
Preference number: 1 (lower is better) Translates to: RLPIHYTLPCLSSAN*PRLGWKASLQRHLA Trigger: TGCCAAGTGCCTCTGCAGACTGGCCTTCCACCCTAGGCGCGGGCAGTTGGCAGAAGAAAGGCAGGGCAGTGTGTAGTGGATGGGCAGCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR GCA 90 bp | GTCTTTAAATCTTCAATATACGGCAGAATGGAGGCCCTAGGCCTATaGAGGCTGCCAGCAGGCTGCCCATCCACTACACACTGCCCTGCC | + |
|
Preference number: 1 (lower is better) Translates to: VFKSSIYGRMEALGL*RLPAGCPSTTHCPA Trigger: GGCAGGGCAGTGTGTAGTGGATGGGCAGCCTGCTGGCAGCCTGCATAGGCCTAGGGCCTCCATTCTGCCGTATATTGAAGATTTAAAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR CCA 90 bp | ACCACTTCCTCTGGCCCTCCCCAGCTGCATCTGTCCAGGTTCAAATaGCTGGAAACACTGAGGGCTTGCTTTTGTTCAAGTGTGTGTGCC | + |
|
Preference number: 1 (lower is better) Translates to: TTSSGPPQLHLSRFK*LETLRACFCSSVCA Trigger: GGCACACACACTTGAACAAAAGCAAGCCCTCAGTGTTTCCAGCCATTTGAACCTGGACAGATGCAGCTGGGGAGGGCCAGAGGAAGTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR-3UTR GCA 90 bp | TCTGAGAGAGAGGGAGCGGGAAGGCAGGCGCACGTGTCCTTGGCAGGTGTGCTCGCCCTGCCTTTCTTCTaGCAACTGCCCGCGCCTAGG | + |
|
Preference number: 2 (lower is better) Translates to: SEREGAGRQAHVSLAGVLALPFF*QLPAPR Trigger: CCTAGGCGCGGGCAGTTGGCAGAAGAAAGGCAGGGC...GAGCACACCTGCCAAGGACACGTGCGCCTGCCTTCCCGCTCCCTCTCTCTCAGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR-3UTR GCA 90 bp | GAGGGGATGGGCCTTACAGTTGAGATAGACCACTTCCTCTGGCCCTCCCCAGCTGAGGCCCTAGGCCTATaGAGGCTGCCAGCAGGCTGC | + |
|
Preference number: 2 (lower is better) Translates to: EGMGLTVEIDHFLWPSPAEALGL*RLPAGC Trigger: GCAGCCTGCTGGCAGCCTGCATAGGCCTAGGGCCTC...AGCTGGGGAGGGCCAGAGGAAGTGGTCTATCTCAACTGTAAGGCCCATCCCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR-3UTR CCA 90 bp | TCTGAGAGAGAGGGAGCGGGAAGGCAGGCGCACGTGTCCTTGGCAGGTGTGCTCTGCTTCCGCTGGTCATaGTTAAGAGGGGATGGGCCT | + |
|
Preference number: 2 (lower is better) Translates to: SEREGAGRQAHVSLAGVLCFRWS*LRGDGP Trigger: AGGCCCATCCCCTCTTAACCATGACCAGCGGAAGCA...GAGCACACCTGCCAAGGACACGTGCGCCTGCCTTCCCGCTCCCTCTCTCTCAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR-3UTR GCA 90 bp | GCTTACACTGTGTTTTCTCCCCTTGATTGCTTCCTTCGGAGCGCTGGCCCACAGCTGGCCCTCCCCAGCTaGATCTGTCCAGGTTCAAAT | + |
|
Preference number: 2 (lower is better) Translates to: AYTVFSPLDCFLRSAGPQLALPS*ICPGSN Trigger: ATTTGAACCTGGACAGATGCAGCTGGGGAGGGCCAG...CTGTGGGCCAGCGCTCCGAAGGAAGCAATCAAGGGGAGAAAACACAGTGTAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR-3UTR TCA 90 bp | CTTCCTTCGGAGCGCTGGCCCACAGCCCTCGGGAAGAAAGGGCAATCTCTGAGAAATGGCTGGAAACACTaGGGGCTTGCTTTTGTTCAA | + |
|
Preference number: 2 (lower is better) Translates to: LPSERWPTALGKKGQSLRNGWKH*GLAFVQ Trigger: TTGAACAAAAGCAAGCCCTCAGTGTTTCCAGCCATT...TCTCAGAGATTGCCCTTTCTTCCCGAGGGCTGTGGGCCAGCGCTCCGAAGGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR-3UTR GCA 90 bp | ACAGCGGCTTACACTGTGTTTTCTCCCCTTGATTGCTTCCTTCGGAGCGCTGGCCACTACACACTGCCCTaGCTTTCTTCTGCCAACTGC | + |
|
Preference number: 2 (lower is better) Translates to: TAAYTVFSPLDCFLRSAGHYTLP*LSSANC Trigger: GCAGTTGGCAGAAGAAAGGCAGGGCAGTGTGTAGTG...GCCAGCGCTCCGAAGGAAGCAATCAAGGGGAGAAAACACAGTGTAAGCCGCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR-3UTR TCA 90 bp | GCTTACACTGTGTTTTCTCCCCTTGATTGCTTCCTTCGGAGCGCTGGCCCACAGGATGGGCCTTACAGTTaGGATAGACCACTTCCTCTG | + |
|
Preference number: 2 (lower is better) Translates to: AYTVFSPLDCFLRSAGPQDGPYS*DRPLPL Trigger: CAGAGGAAGTGGTCTATCTCAACTGTAAGGCCCATC...CTGTGGGCCAGCGCTCCGAAGGAAGCAATCAAGGGGAGAAAACACAGTGTAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR-3UTR TCA 90 bp | CTTCCTTCGGAGCGCTGGCCCACAGCCCTCGGGAAGAAAGGGCAATCTCTGAGATGGCAATTTTGGATATaGAAGAGGGTAAGAAGTGTA | + |
|
Preference number: 2 (lower is better) Translates to: LPSERWPTALGKKGQSLRWQFWI*KRVRSV Trigger: TACACTTCTTACCCTCTTTCATATCCAAAATTGCCA...TCTCAGAGATTGCCCTTTCTTCCCGAGGGCTGTGGGCCAGCGCTCCGAAGGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR CAA 90 bp | GCCAACTGCCCGCGCCTAGGGTGGAAGGCCAGTCTGCAGAGGCACTaGGCAATTTTGGATATGAAAGAGGGTAAGAAGTGTAACAATAAA | + |
|
Preference number: 2 (lower is better) Translates to: ANCPRLGWKASLQRH*AILDMKEGKKCNNK Trigger: TTTATTGTTACACTTCTTACCCTCTTTCATATCCAAAATTGCCAAGTGCCTCTGCAGACTGGCCTTCCACCCTAGGCGCGGGCAGTTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR GCA 72 bp | GCTGCCAGCAGGCTGCCCATCCACTACACACTGCCCTaGCTTTCTTCTGCCAACTGCCCGCGCCTAGGGTGG | + |
|
Preference number: 3 (lower is better) Translates to: AASRLPIHYTLP*LSSANCPRLGW Trigger: CCACCCTAGGCGCGGGCAGTTGGCAGAAGAAAGGCAGGGCAGTGTGTAGTGGATGGGCAGCCTGCTGGCAGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR GCA 72 bp | ATCCACTACACACTGCCCTGCCTTTCTTCTGCCAACTaGCCGCGCCTAGGGTGGAAGGCCAGTCTGCAGAGG | + |
|
Preference number: 3 (lower is better) Translates to: IHYTLPCLSSAN*PRLGWKASLQR Trigger: CCTCTGCAGACTGGCCTTCCACCCTAGGCGCGGGCAGTTGGCAGAAGAAAGGCAGGGCAGTGTGTAGTGGAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR TCA 72 bp | CGCTGGTCATGGTTAAGAGGGGATGGGCCTTACAGTTaGGATAGACCACTTCCTCTGGCCCTCCCCAGCTGC | + |
|
Preference number: 3 (lower is better) Translates to: RWSWLRGDGPYS*DRPLPLALPSC Trigger: GCAGCTGGGGAGGGCCAGAGGAAGTGGTCTATCTCAACTGTAAGGCCCATCCCCTCTTAACCATGACCAGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR GCA 72 bp | TTGACAGCGGCTTACACTGTGTTTTCTCCCCTTGATTaGTTCCTTCGGAGCGCTGGCCCACAGCCCTCGGGA | + |
|
Preference number: 3 (lower is better) Translates to: LTAAYTVFSPLD*FLRSAGPQPSG Trigger: TCCCGAGGGCTGTGGGCCAGCGCTCCGAAGGAAGCAATCAAGGGGAGAAAACACAGTGTAAGCCGCTGTCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR GCA 72 bp | TCTTCAATATACGGCAGAATGGAGGCCCTAGGCCTATaGAGGCTGCCAGCAGGCTGCCCATCCACTACACAC | + |
|
Preference number: 3 (lower is better) Translates to: SSIYGRMEALGL*RLPAGCPSTTH Trigger: GTGTGTAGTGGATGGGCAGCCTGCTGGCAGCCTGCATAGGCCTAGGGCCTCCATTCTGCCGTATATTGAAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR CCA 72 bp | GGGATGGGCCTTACAGTTGAGATAGACCACTTCCTCTaGCCCTCCCCAGCTGCATCTGTCCAGGTTCAAATG | + |
|
Preference number: 3 (lower is better) Translates to: GMGLTVEIDHFL*PSPAASVQVQM Trigger: CATTTGAACCTGGACAGATGCAGCTGGGGAGGGCCAGAGGAAGTGGTCTATCTCAACTGTAAGGCCCATCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR TCA 72 bp | TTTATTGACAGCGGCTTACACTGTGTTTTCTCCCCTTaGTTGCTTCCTTCGGAGCGCTGGCCCACAGCCCTC | + |
|
Preference number: 3 (lower is better) Translates to: FIDSGLHCVFSP*LLPSERWPTAL Trigger: GAGGGCTGTGGGCCAGCGCTCCGAAGGAAGCAATCAAGGGGAGAAAACACAGTGTAAGCCGCTGTCAATAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR-3UTR CAA 90 bp | CTTCCTTCGGAGCGCTGGCCCACAGCCCTCGGGAAGAAAGGGCAATCTCTGAGAAGGCACTTGGCAATTTaGGATATGAAAGAGGGTAAG | + |
|
Preference number: 3 (lower is better) Translates to: LPSERWPTALGKKGQSLRRHLAI*DMKEGK Trigger: CTTACCCTCTTTCATATCCAAAATTGCCAAGTGCCT...TCTCAGAGATTGCCCTTTCTTCCCGAGGGCTGTGGGCCAGCGCTCCGAAGGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR CCA 72 bp | TCTGGCCCTCCCCAGCTGCATCTGTCCAGGTTCAAATaGCTGGAAACACTGAGGGCTTGCTTTTGTTCAAGT | + |
|
Preference number: 3 (lower is better) Translates to: SGPPQLHLSRFK*LETLRACFCSS Trigger: ACTTGAACAAAAGCAAGCCCTCAGTGTTTCCAGCCATTTGAACCTGGACAGATGCAGCTGGGGAGGGCCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR TCA 72 bp | AGCTGCATCTGTCCAGGTTCAAATGGCTGGAAACACTaGGGGCTTGCTTTTGTTCAAGTGTGTGTGCCACTG | + |
|
Preference number: 3 (lower is better) Translates to: SCICPGSNGWKH*GLAFVQVCVPL Trigger: CAGTGGCACACACACTTGAACAAAAGCAAGCCCTCAGTGTTTCCAGCCATTTGAACCTGGACAGATGCAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR GCA 72 bp | CTGTCCAGGTTCAAATGGCTGGAAACACTGAGGGCTTaGTTTTGTTCAAGTGTGTGTGCCACTGTCTTTAAA | + |
|
Preference number: 3 (lower is better) Translates to: LSRFKWLETLRA*FCSSVCATVFK Trigger: TTTAAAGACAGTGGCACACACACTTGAACAAAAGCAAGCCCTCAGTGTTTCCAGCCATTTGAACCTGGACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| CDS-3UTR CCA 90 bp | ACTGCCCTGCCTTTCTTCTGCCAACTGCCCGCGCCTAGGGTGGAAGGCCAGTCTCGAGAGCGGGAGAGCTaGTACGCAATGTCCTCGGCG | + |
|
Preference number: 4 (lower is better) Translates to: TALPFFCQLPAPRVEGQSRERES*YAMSSA Trigger: CGCCGAGGACATTGCGTACCAGCTCTCCCGCTCTCG...AGACTGGCCTTCCACCCTAGGCGCGGGCAGTTGGCAGAAGAAAGGCAGGGCAGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||
| 3UTR CAA 72 bp | CCGCGCCTAGGGTGGAAGGCCAGTCTGCAGAGGCACTaGGCAATTTTGGATATGAAAGAGGGTAAGAAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: PRLGWKASLQRH*AILDMKEGKKC Trigger: ACACTTCTTACCCTCTTTCATATCCAAAATTGCCAAGTGCCTCTGCAGACTGGCCTTCCACCCTAGGCGCGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125172.8 |
||