Pregenerated sensors for PHAX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000008301Ensembl transcript IDs: ENSMUST00000008445.7, ENSMUST00000130163.8, ENSMUST00000132628.8
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | TGCCGTGCACCGAGAGACACAGCCCTCCCTCCACGCTaGTGCCGAGCGCACCCCTGTCCACATACATCACAT | + |
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Preference number: 3 (lower is better) Translates to: CRAPRDTALPPR*CRAHPCPHTSH Trigger: ATGTGATGTATGTGGACAGGGGTGCGCTCGGCAGCAGCGTGGAGGGAGGGCTGTGTCTCTCGGTGCACGGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| 3UTR GCA 72 bp | GAGGTCACAGCCCCACTCAGGCTAACAGACAGCACATaGCACAGAATGAGATTTAACCCGTGCCGTGCACCG | + |
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Preference number: 3 (lower is better) Translates to: EVTAPLRLTDST*HRMRFNPCRAP Trigger: CGGTGCACGGCACGGGTTAAATCTCATTCTGTGGCATGTGCTGTCTGTTAGCCTGAGTGGGGCTGTGACCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| 3UTR TCA 72 bp | CAAGATGAGTCAGAAAACCGAAGTGTCTTAATGGCATaGAACAGTGGGCTGAACAGAGGTCACAGCCCCACT | + |
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Preference number: 3 (lower is better) Translates to: QDESENRSVLMA*NSGLNRGHSPT Trigger: AGTGGGGCTGTGACCTCTGTTCAGCCCACTGTTTCATGCCATTAAGACACTTCGGTTTTCTGACTCATCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| 3UTR TCA 72 bp | TGGAATGTGTTAAAACCAAAGCATAGTTCACCAAGATaGGTCAGAAAACCGAAGTGTCTTAATGGCATGAAA | + |
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Preference number: 3 (lower is better) Translates to: WNVLKPKHSSPR*VRKPKCLNGMK Trigger: TTTCATGCCATTAAGACACTTCGGTTTTCTGACTCATCTTGGTGAACTATGCTTTGGTTTTAACACATTCCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR CCA 90 bp | CGTGCCGTGCACCGAGAGACACAGCCCTCCCTCCACGCTGCTGCCGAGCGCACCTCGCCAGGTCCTTCCTaGGCTTCGTCGAGAGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: RAVHRETQPSLHAAAERTSPGPS*ASSREA Trigger: GGCCTCTCTCGACGAAGCCCAGGAAGGACCTGGCGA...GGTGCGCTCGGCAGCAGCGTGGAGGGAGGGCTGTGTCTCTCGGTGCACGGCACG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR CCA 90 bp | TGCCACAGAATGAGATTTAACCCGTGCCGTGCACCGAGAGACACAGCCCTCCCTGCAGAGGCCTATCGCTaGGGACGACCGTCATGTCGG | + |
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Preference number: 4 (lower is better) Translates to: CHRMRFNPCRAPRDTALPAEAYR*GRPSCR Trigger: CCGACATGACGGTCGTCCCCAGCGATAGGCCTCTGC...AGGGAGGGCTGTGTCTCTCGGTGCACGGCACGGGTTAAATCTCATTCTGTGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR CCA 90 bp | TGCCACAGAATGAGATTTAACCCGTGCCGTGCACCGAGAGACACAGCCCTCCCTGGTGGTCCACCTCAATaGCCTCCTCAGCATCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: CHRMRFNPCRAPRDTALPGGPPQ*PPQHPA Trigger: AGCTGGATGCTGAGGAGGCCATTGAGGTGGACCACC...AGGGAGGGCTGTGTCTCTCGGTGCACGGCACGGGTTAAATCTCATTCTGTGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR TCA 90 bp | GCTGCTGCCGAGCGCACCCCTGTCCACATACATCACATACACAGAAACAGGAACCAGGTCGTTTCCGCTTaGGGTGACCTTGCCCATTCT | + |
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Preference number: 4 (lower is better) Translates to: AAAERTPVHIHHIHRNRNQVVSA*GDLAHS Trigger: AGAATGGGCAAGGTCACCTCAAGCGGAAACGACCTG...GTTCCTGTTTCTGTGTATGTGATGTATGTGGACAGGGGTGCGCTCGGCAGCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR TCA 90 bp | CACGCTGCTGCCGAGCGCACCCCTGTCCACATACATCACATACACAGAAACAGGAAGATGTCCAAGTCCTaGGGGTGGTCCACCTCAATG | + |
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Preference number: 4 (lower is better) Translates to: HAAAERTPVHIHHIHRNRKMSKS*GWSTSM Trigger: CATTGAGGTGGACCACCCTCAGGACTTGGACATCTT...CCTGTTTCTGTGTATGTGATGTATGTGGACAGGGGTGCGCTCGGCAGCAGCGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR CCA 90 bp | CCACGCTGCTGCCGAGCGCACCCCTGTCCACATACATCACATACACAGAAACAGAGATGCCGAGTTCAGTaGCCACCGCATCTTGATTCT | + |
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Preference number: 4 (lower is better) Translates to: PRCCRAHPCPHTSHTQKQRCRVQ*PPHLDS Trigger: AGAATCAAGATGCGGTGGCCACTGAACTCGGCATCT...CTGTTTCTGTGTATGTGATGTATGTGGACAGGGGTGCGCTCGGCAGCAGCGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR TCA 90 bp | GCTGCTGCCGAGCGCACCCCTGTCCACATACATCACATACACAGAAACAGGAACTTGAGAGCCGTTTTCTaGCCACTTGGTCCAAATGGG | + |
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Preference number: 4 (lower is better) Translates to: AAAERTPVHIHHIHRNRNLRAVF*PLGPNG Trigger: CCCATTTGGACCAAGTGGTCAGAAAACGGCTCTCAA...GTTCCTGTTTCTGTGTATGTGATGTATGTGGACAGGGGTGCGCTCGGCAGCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR CCA 90 bp | TGCCACAGAATGAGATTTAACCCGTGCCGTGCACCGAGAGACACAGCCCTCCCTCGTTTTCTGACCACTTaGTCCAAATGGGAAAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: CHRMRFNPCRAPRDTALPRFLTT*SKWERL Trigger: GAGCCTTTCCCATTTGGACCAAGTGGTCAGAAAACG...AGGGAGGGCTGTGTCTCTCGGTGCACGGCACGGGTTAAATCTCATTCTGTGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR GCA 90 bp | TGCCACAGAATGAGATTTAACCCGTGCCGTGCACCGAGAGACACAGCCCTCCCTGACACTTCTGTCGCTTaGGTTTCCAAAGAGAGCAAT | + |
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Preference number: 4 (lower is better) Translates to: CHRMRFNPCRAPRDTALPDTSVA*VSKESN Trigger: ATTGCTCTCTTTGGAAACGCAAGCGACAGAAGTGTC...AGGGAGGGCTGTGTCTCTCGGTGCACGGCACGGGTTAAATCTCATTCTGTGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR CCA 90 bp | ACAAAATGCCCTTTAACCACCATAAGCATGGCCTCCACACCTCCTCTCTCATGCACCACTTGGTCCAAATaGGAAAGGCTCTGGCTTGGG | + |
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Preference number: 4 (lower is better) Translates to: TKCPLTTISMASTPPLSCTTWSK*ERLWLG Trigger: CCCAAGCCAGAGCCTTTCCCATTTGGACCAAGTGGT...GCATGAGAGAGGAGGTGTGGAGGCCATGCTTATGGTGGTTAAAGGGCATTTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR CCA 90 bp | ATCACATACACAGAAACAGGAACAGCGCCCCTTTCTCTAGTCTCAGTACACAGTCCTCAGCATCCAGCTTaGTCTCGCCAGGTCCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: ITYTETGTAPLSLVSVHSPQHPA*SRQVLP Trigger: AGGAAGGACCTGGCGAGACCAAGCTGGATGCTGAGG...ACTGTGTACTGAGACTAGAGAAAGGGGCGCTGTTCCTGTTTCTGTGTATGTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR TCA 90 bp | AGCACATGCCACAGAATGAGATTTAACCCGTGCCGTGCACCGAGAGACACAGCCGGCTACCATTCATTATaGAAAGACCACCATTTTGCT | + |
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Preference number: 4 (lower is better) Translates to: STCHRMRFNPCRAPRDTAGYHSL*KDHHFA Trigger: AGCAAAATGGTGGTCTTTTCATAATGAATGGTAGCC...GGCTGTGTCTCTCGGTGCACGGCACGGGTTAAATCTCATTCTGTGGCATGTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR CCA 90 bp | GCTGCTGCCGAGCGCACCCCTGTCCACATACATCACATACACAGAAACAGGAACGTGTCATCGTCCTCCTaGAAGTTCAGACTTTTAATA | + |
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Preference number: 4 (lower is better) Translates to: AAAERTPVHIHHIHRNRNVSSSS*KFRLLI Trigger: TATTAAAAGTCTGAACTTCCAGGAGGACGATGACAC...GTTCCTGTTTCTGTGTATGTGATGTATGTGGACAGGGGTGCGCTCGGCAGCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR TCA 90 bp | ACAAAATGCCCTTTAACCACCATAAGCATGGCCTCCACACCTCCTCTCTCATGCTCCTTTGTGTACTCTTaGGATTCCTTCTTAGCAAGT | + |
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Preference number: 4 (lower is better) Translates to: TKCPLTTISMASTPPLSCSFVYS*DSFLAS Trigger: ACTTGCTAAGAAGGAATCTCAAGAGTACACAAAGGA...GCATGAGAGAGGAGGTGTGGAGGCCATGCTTATGGTGGTTAAAGGGCATTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR GCA 90 bp | ACAGAAACAGGAACAGCGCCCCTTTCTCTAGTCTCAGTACACAGTAAAGCAACCAAAAGACCACCATTTTaGTCGACTTCAGCTGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: TETGTAPLSLVSVHSKATKRPPF*STSAVS Trigger: GGAAACAGCTGAAGTCGAGCAAAATGGTGGTCTTTT...GGTTGCTTTACTGTGTACTGAGACTAGAGAAAGGGGCGCTGTTCCTGTTTCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS CCA 90 bp | AGTCCTGAGGGTGGTCCACCTCAATGGCCTCCTCAGCATCCAGCTTaGTCTCGCCAGGTCCTTCCTGGGCTTCGTCGAGAGAGGCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: SPEGGPPQWPPQHPA*SRQVLPGLRRERPG Trigger: CCCTGGCCTCTCTCGACGAAGCCCAGGAAGGACCTGGCGAGACCAAGCTGGATGCTGAGGAGGCCATTGAGGTGGACCACCCTCAGGACT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 |
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| CDS TCA 90 bp | TCCTCACTACTCGGGCTATCAGGTCCTTCTTGGGTTCCTGCAACCTaGAGGCGATCTCATCGGCTACTTTCTCGGGAGCATCCTCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: SSLLGLSGPSWVPAT*RRSHRLLSREHPLL Trigger: CAGAAGAGGATGCTCCCGAGAAAGTAGCCGATGAGATCGCCTTCAGGTTGCAGGAACCCAAGAAGGACCTGATAGCCCGAGTAGTGAGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 ENSMUST00000132628.8 |
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| CDS GCA 90 bp | CCAAGTATCCTCACTACTCGGGCTATCAGGTCCTTCTTGGGTTCCTaGAACCTGAAGGCGATCTCATCGGCTACTTTCTCGGGAGCATCC | + |
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Preference number: 5 (lower is better) Translates to: PSILTTRAIRSFLGS*NLKAISSATFSGAS Trigger: GGATGCTCCCGAGAAAGTAGCCGATGAGATCGCCTTCAGGTTGCAGGAACCCAAGAAGGACCTGATAGCCCGAGTAGTGAGGATACTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 ENSMUST00000132628.8 |
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| CDS-3UTR CAA 90 bp | GCTGCTGCCGAGCGCACCCCTGTCCACATACATCACATACACAGAAACAGGAACGCTATCAGGTCCTTCTaGGGTTCCTGCAACCTGAAG | + |
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Preference number: 5 (lower is better) Translates to: AAAERTPVHIHHIHRNRNAIRSF*GSCNLK Trigger: CTTCAGGTTGCAGGAACCCAAGAAGGACCTGATAGC...GTTCCTGTTTCTGTGTATGTGATGTATGTGGACAGGGGTGCGCTCGGCAGCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS GCA 90 bp | TTCCTGGGCTTCGTCGAGAGAGGCCAGGGCCTCATTAGTGTCACTTaGAAACGTTTCTCGAGATGTGTCATCGTCCTCCTGGAAGTTCAG | + |
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Preference number: 5 (lower is better) Translates to: FLGFVERGQGLISVT*KRFSRCVIVLLEVQ Trigger: CTGAACTTCCAGGAGGACGATGACACATCTCGAGAAACGTTTGCAAGTGACACTAATGAGGCCCTGGCCTCTCTCGACGAAGCCCAGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 |
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| CDS-3UTR CAA 90 bp | AGCACATGCCACAGAATGAGATTTAACCCGTGCCGTGCACCGAGAGACACAGCCCCGTTTTCTGACCACTaGGTCCAAATGGGAAAGGCT | + |
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Preference number: 5 (lower is better) Translates to: STCHRMRFNPCRAPRDTAPFSDH*VQMGKA Trigger: AGCCTTTCCCATTTGGACCAAGTGGTCAGAAAACGG...GGCTGTGTCTCTCGGTGCACGGCACGGGTTAAATCTCATTCTGTGGCATGTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR CAA 90 bp | GCTGCTGCCGAGCGCACCCCTGTCCACATACATCACATACACAGAAACAGGAACGAAAAGACCACCATTTaGCTCGACTTCAGCTGTTTC | + |
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Preference number: 5 (lower is better) Translates to: AAAERTPVHIHHIHRNRNEKTTI*LDFSCF Trigger: GAAACAGCTGAAGTCGAGCAAAATGGTGGTCTTTTC...GTTCCTGTTTCTGTGTATGTGATGTATGTGGACAGGGGTGCGCTCGGCAGCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS TCA 90 bp | CCACTTGGTCCAAATGGGAAAGGCTCTGGCTTGGGAGGAGTATTATaGCACTTCTGTCGCTTGCGTTTCCAAAGAGAGCAATCGTCATCG | + |
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Preference number: 5 (lower is better) Translates to: PLGPNGKGSGLGGVL*HFCRLRFQREQSSS Trigger: CGATGACGATTGCTCTCTTTGGAAACGCAAGCGACAGAAGTGTCATAATACTCCTCCCAAGCCAGAGCCTTTCCCATTTGGACCAAGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 ENSMUST00000132628.8 |
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| CDS CCA 90 bp | GAGCCGTTTTCTGACCACTTGGTCCAAATGGGAAAGGCTCTGGCTTaGGAGGAGTATTATGACACTTCTGTCGCTTGCGTTTCCAAAGAG | + |
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Preference number: 5 (lower is better) Translates to: EPFSDHLVQMGKALA*EEYYDTSVACVSKE Trigger: CTCTTTGGAAACGCAAGCGACAGAAGTGTCATAATACTCCTCCCAAGCCAGAGCCTTTCCCATTTGGACCAAGTGGTCAGAAAACGGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 ENSMUST00000132628.8 |
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| CDS CCA 90 bp | GTTGAGAGCCGTTTTCTGACCACTTGGTCCAAATGGGAAAGGCTCTaGCTTGGGAGGAGTATTATGACACTTCTGTCGCTTGCGTTTCCA | + |
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Preference number: 5 (lower is better) Translates to: VESRFLTTWSKWERL*LGRSIMTLLSLAFP Trigger: TGGAAACGCAAGCGACAGAAGTGTCATAATACTCCTCCCAAGCCAGAGCCTTTCCCATTTGGACCAAGTGGTCAGAAAACGGCTCTCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 ENSMUST00000132628.8 |
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| CDS-3UTR CAA 90 bp | TGCCACAGAATGAGATTTAACCCGTGCCGTGCACCGAGAGACACAGCCCTCCCTTTCCTTTGTGTACTCTaGAGATTCCTTCTTAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: CHRMRFNPCRAPRDTALPFLCVL*RFLLSK Trigger: CTTGCTAAGAAGGAATCTCAAGAGTACACAAAGGAA...AGGGAGGGCTGTGTCTCTCGGTGCACGGCACGGGTTAAATCTCATTCTGTGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR CAA 90 bp | GCTGCTGCCGAGCGCACCCCTGTCCACATACATCACATACACAGAAACAGGAACAGTTCAATGGCCTTTTaGTTCCCAAGTATCCTCACT | + |
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Preference number: 5 (lower is better) Translates to: AAAERTPVHIHHIHRNRNSSMAF*FPSILT Trigger: AGTGAGGATACTTGGGAACAAAAAGGCCATTGAACT...GTTCCTGTTTCTGTGTATGTGATGTATGTGGACAGGGGTGCGCTCGGCAGCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS-3UTR CAA 90 bp | ACAAAATGCCCTTTAACCACCATAAGCATGGCCTCCACACCTCCTCTCTCATGCCTTTGTCTAATTCCTTaGTGTACTCTTGAGATTCCT | + |
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Preference number: 5 (lower is better) Translates to: TKCPLTTISMASTPPLSCLCLIP*CTLEIP Trigger: AGGAATCTCAAGAGTACACAAAGGAATTAGACAAAG...GCATGAGAGAGGAGGTGTGGAGGCCATGCTTATGGTGGTTAAAGGGCATTTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS GCA 72 bp | CACGCAGCGCTGCCCCCACCTAGGACTTTCGCCATTTaGAGAGGCCTATCGCTGGGGACGACCGTCATGTCG | + |
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Preference number: 6 (lower is better) Translates to: HAALPPPRTFAI*RGLSLGTTVMS Trigger: CGACATGACGGTCGTCCCCAGCGATAGGCCTCTGCAAATGGCGAAAGTCCTAGGTGGGGGCAGCGCTGCGTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008445.7 |
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| CDS CCA 72 bp | TCCTCAGCATCCAGCTTGGTCTCGCCAGGTCCTTCCTaGGCTTCGTCGAGAGAGGCCAGGGCCTCATTAGTG | + |
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Preference number: 6 (lower is better) Translates to: SSASSLVSPGPS*ASSREARASLV Trigger: CACTAATGAGGCCCTGGCCTCTCTCGACGAAGCCCAGGAAGGACCTGGCGAGACCAAGCTGGATGCTGAGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 |
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| CDS TCA 72 bp | CTCGGGCTATCAGGTCCTTCTTGGGTTCCTGCAACCTaGAGGCGATCTCATCGGCTACTTTCTCGGGAGCAT | + |
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Preference number: 6 (lower is better) Translates to: LGLSGPSWVPAT*RRSHRLLSREH Trigger: ATGCTCCCGAGAAAGTAGCCGATGAGATCGCCTTCAGGTTGCAGGAACCCAAGAAGGACCTGATAGCCCGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 ENSMUST00000132628.8 |
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| CDS GCA 72 bp | CTCACTACTCGGGCTATCAGGTCCTTCTTGGGTTCCTaGAACCTGAAGGCGATCTCATCGGCTACTTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: LTTRAIRSFLGS*NLKAISSATFS Trigger: CGAGAAAGTAGCCGATGAGATCGCCTTCAGGTTGCAGGAACCCAAGAAGGACCTGATAGCCCGAGTAGTGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 ENSMUST00000132628.8 |
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| CDS CAA 72 bp | CCAAGTATCCTCACTACTCGGGCTATCAGGTCCTTCTaGGGTTCCTGCAACCTGAAGGCGATCTCATCGGCT | + |
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Preference number: 6 (lower is better) Translates to: PSILTTRAIRSF*GSCNLKAISSA Trigger: AGCCGATGAGATCGCCTTCAGGTTGCAGGAACCCAAGAAGGACCTGATAGCCCGAGTAGTGAGGATACTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 ENSMUST00000132628.8 |
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| CDS GCA 72 bp | TTCGTCGAGAGAGGCCAGGGCCTCATTAGTGTCACTTaGAAACGTTTCTCGAGATGTGTCATCGTCCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: FVERGQGLISVT*KRFSRCVIVLL Trigger: CAGGAGGACGATGACACATCTCGAGAAACGTTTGCAAGTGACACTAATGAGGCCCTGGCCTCTCTCGACGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 |
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| CDS TCA 72 bp | TTGTTCACCTTCTTTCCTCCGTTGAGAGCCGTTTTCTaGCCACTTGGTCCAAATGGGAAAGGCTCTGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: LFTFFPPLRAVF*PLGPNGKGSGL Trigger: CAAGCCAGAGCCTTTCCCATTTGGACCAAGTGGTCAGAAAACGGCTCTCAACGGAGGAAAGAAGGTGAACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 ENSMUST00000132628.8 |
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| CDS TCA 72 bp | TCTCATCGGCTACTTTCTCGGGAGCATCCTCTTCTGTaGTCTCATAGCGCCCTTTGTAGTTCATTTCCACTC | + |
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Preference number: 6 (lower is better) Translates to: SHRLLSREHPLL*SHSALCSSFPL Trigger: GAGTGGAAATGAACTACAAAGGGCGCTATGAGATCACAGAAGAGGATGCTCCCGAGAAAGTAGCCGATGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 ENSMUST00000132628.8 |
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| CDS CCA 72 bp | CGTTTTCTGACCACTTGGTCCAAATGGGAAAGGCTCTaGCTTGGGAGGAGTATTATGACACTTCTGTCGCTT | + |
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Preference number: 6 (lower is better) Translates to: RFLTTWSKWERL*LGRSIMTLLSL Trigger: AAGCGACAGAAGTGTCATAATACTCCTCCCAAGCCAGAGCCTTTCCCATTTGGACCAAGTGGTCAGAAAACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 ENSMUST00000132628.8 |
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| CDS GCA 72 bp | CTGGCTTGGGAGGAGTATTATGACACTTCTGTCGCTTaGGTTTCCAAAGAGAGCAATCGTCATCGGAATCTA | + |
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Preference number: 6 (lower is better) Translates to: LAWEEYYDTSVA*VSKESNRHRNL Trigger: TAGATTCCGATGACGATTGCTCTCTTTGGAAACGCAAGCGACAGAAGTGTCATAATACTCCTCCCAAGCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 ENSMUST00000132628.8 |
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| CDS CAA 90 bp | TTTTGCTCGACTTCAGCTGTTTCCATCAGAAGTTCAATGGCCTTTTaGTTCCCAAGTATCCTCACTACTCGGGCTATCAGGTCCTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: FCSTSAVSIRSSMAF*FPSILTTRAIRSFL Trigger: CAAGAAGGACCTGATAGCCCGAGTAGTGAGGATACTTGGGAACAAAAAGGCCATTGAACTTCTGATGGAAACAGCTGAAGTCGAGCAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 ENSMUST00000132628.8 |
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| CDS CAA 90 bp | GGGTGTTCTTCTTCGGCTACCATTCATTATGAAAAGACCACCATTTaGCTCGACTTCAGCTGTTTCCATCAGAAGTTCAATGGCCTTTTT | + |
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Preference number: 6 (lower is better) Translates to: GCSSSATIHYEKTTI*LDFSCFHQKFNGLF Trigger: AAAAAGGCCATTGAACTTCTGATGGAAACAGCTGAAGTCGAGCAAAATGGTGGTCTTTTCATAATGAATGGTAGCCGAAGAAGAACACCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 |
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| CDS GCA 72 bp | CTTCGGCTACCATTCATTATGAAAAGACCACCATTTTaGTCGACTTCAGCTGTTTCCATCAGAAGTTCAATG | + |
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Preference number: 6 (lower is better) Translates to: LRLPFIMKRPPF*STSAVSIRSSM Trigger: CATTGAACTTCTGATGGAAACAGCTGAAGTCGAGCAAAATGGTGGTCTTTTCATAATGAATGGTAGCCGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000008445.7 ENSMUST00000130163.8 |
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