Pregenerated sensors for PHAF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031889

Ensembl transcript IDs: ENSMUST00000034361.10, ENSMUST00000124113.8, ENSMUST00000132964.2, ENSMUST00000141957.8

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CACTCCAGGTCCACAACCTGCAGCGAGCAAGCGAAGTCGCAACCCTaGGGGTCCAGTTCCATCTCGAAGAACGTCTACACTTTCAGCATA	+
Preference number: 5 (lower is better) Translates to: HSRSTTCSEQAKSQP*GSSSISKNVYTFSI Trigger: TATGCTGAAAGTGTAGACGTTCTTCGAGATGGAACTGGACCCTCAGGGTTGCGACTTCGCTTGCTCGCTGCAGGTTGTGGACCTGGAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034361.10
CDS TCA 90 bp	TCACAGGAGCCCTCATACTTGGGAGCCTCCGTCCACGAGTCTAACTaGAAAGAGAAAGACAGTCCTCGGAAGTTGAGGTGGAAGAGCTGC	+
Preference number: 5 (lower is better) Translates to: SQEPSYLGASVHESN*KEKDSPRKLRWKSC Trigger: GCAGCTCTTCCACCTCAACTTCCGAGGACTGTCTTTCTCTTTTCAGTTAGACTCGTGGACGGAGGCTCCCAAGTATGAGGGCTCCTGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141957.8
CDS GCA 90 bp	AATGTGGAGCCAAACGGATTGGTGTTATTTGGGGATGAGGACCTGTaGAAGACAACAGGCTTCTCCACAGGATGGCCCAGAAGCTCCTGG	+
Preference number: 5 (lower is better) Translates to: NVEPNGLVLFGDEDL*KTTGFSTGWPRSSW Trigger: CCAGGAGCTTCTGGGCCATCCTGTGGAGAAGCCTGTTGTCTTGCACAGGTCCTCATCCCCAAATAACACCAATCCGTTTGGCTCCACATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034361.10
CDS TCA 90 bp	GCAAAATTGGGCTCATACTTGGGAGCCTCCGTCCACGAGTCTAACTaGAAAGAGAAAGACAGTCCTCGGAAGTTGAGGTGGAAGAGCTGC	+
Preference number: 5 (lower is better) Translates to: AKLGSYLGASVHESN*KEKDSPRKLRWKSC Trigger: GCAGCTCTTCCACCTCAACTTCCGAGGACTGTCTTTCTCTTTTCAGTTAGACTCGTGGACGGAGGCTCCCAAGTATGAGCCCAATTTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034361.10
CDS CCA 90 bp	AGATCATCCGCTGAAGACCAAAGCAGAATGTGGAGCCAAACGGATTaGTGTTATTTGGGGATGAGGACCTGTGCAAGACAACAGGCTTCT	+
Preference number: 5 (lower is better) Translates to: RSSAEDQSRMWSQTD*CYLGMRTCARQQAS Trigger: AGAAGCCTGTTGTCTTGCACAGGTCCTCATCCCCAAATAACACCAATCCGTTTGGCTCCACATTCTGCTTTGGTCTTCAGCGGATGATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034361.10
CDS CCA 90 bp	GCATATTTCAGTCTGACCACCTGCATTTTCTTTCTTTATGGCCAGTaGGATCTTGAACTCACAGCGGTGGTAAATGTTAAAATTATAATG	+
Preference number: 5 (lower is better) Translates to: AYFSLTTCIFFLYGQ*DLELTAVVNVKIIM Trigger: CATTATAATTTTAACATTTACCACCGCTGTGAGTTCAAGATCCCACTGGCCATAAAGAAAGAAAATGCAGGTGGTCAGACTGAAATATGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034361.10
CDS CCA 90 bp	AGAGTGAATTTTCATCTTGTCTTCAGATTTATAGAAGACTTTGTGTaGAGAGCCAAGCATGCTAAGAACATCTTGGCAAGAATCACCAAA	+
Preference number: 5 (lower is better) Translates to: RVNFHLVFRFIEDFV*RAKHAKNILARITK Trigger: TTTGGTGATTCTTGCCAAGATGTTCTTAGCATGCTTGGCTCTCCACACAAAGTCTTCTATAAATCTGAAGACAAGATGAAAATTCACTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034361.10
CDS TCA 72 bp	AGAACCTGGACGTTTCTGATGATGCGACAGTGCTTCTaGAGAATGGCGACCGCCTGCGCCAGAGGCATTCCC	+
Preference number: 6 (lower is better) Translates to: RTWTFLMMRQCF*RMATACARGIP Trigger: GGGAATGCCTCTGGCGCAGGCGGTCGCCATTCTTCAGAAGCACTGTCGCATCATCAGAAACGTCCAGGTTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034361.10 ENSMUST00000124113.8 ENSMUST00000141957.8
CDS TCA 72 bp	TCCACAACCTGCAGCGAGCAAGCGAAGTCGCAACCCTaGGGGTCCAGTTCCATCTCGAAGAACGTCTACACT	+
Preference number: 6 (lower is better) Translates to: STTCSEQAKSQP*GSSSISKNVYT Trigger: AGTGTAGACGTTCTTCGAGATGGAACTGGACCCTCAGGGTTGCGACTTCGCTTGCTCGCTGCAGGTTGTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034361.10
CDS GCA 72 bp	CAGGATGGCCCAGAAGCTCCTGGATGCTGTCCCACTTaGTGTAGGTTGTGCATATTTCAGTCTGACCACCTG	+
Preference number: 6 (lower is better) Translates to: QDGPEAPGCCPT*CRLCIFQSDHL Trigger: CAGGTGGTCAGACTGAAATATGCACAACCTACAGCAAGTGGGACAGCATCCAGGAGCTTCTGGGCCATCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034361.10
CDS GCA 72 bp	CCAAACGGATTGGTGTTATTTGGGGATGAGGACCTGTaGAAGACAACAGGCTTCTCCACAGGATGGCCCAGA	+
Preference number: 6 (lower is better) Translates to: PNGLVLFGDEDL*KTTGFSTGWPR Trigger: TCTGGGCCATCCTGTGGAGAAGCCTGTTGTCTTGCACAGGTCCTCATCCCCAAATAACACCAATCCGTTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034361.10
CDS CCA 72 bp	GGGGTATCTGAAGAGAAGCTAGACCATGGGCAAAATTaGGCTCATACTTGGGAGCCTCCGTCCACGAGTCTA	+
Preference number: 6 (lower is better) Translates to: GVSEEKLDHGQN*AHTWEPPSTSL Trigger: TAGACTCGTGGACGGAGGCTCCCAAGTATGAGCCCAATTTTGCCCATGGTCTAGCTTCTCTTCAGATACCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034361.10
CDS CCA 72 bp	TCCCCAGGAAACAGCTCAAGGGCATCACAGGAGCCTTaGTATCCTGGAGGCTGTTCCCACTATAGATGTACA	+
Preference number: 6 (lower is better) Translates to: SPGNSSRASQEP*YPGGCSHYRCT Trigger: TGTACATCTATAGTGGGAACAGCCTCCAGGATACCAAGGCTCCTGTGATGCCCTTGAGCTGTTTCCTGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034361.10
CDS CAA 90 bp	TCACAGGAGCCCTCCAGGATGGGTTGCGCCAAAAGACTGGTCAATTaGCTCAATGGTAGGAGCGATGGCCTGAGAGTTAAAATGCACTCC	+
Preference number: 6 (lower is better) Translates to: SQEPSRMGCAKRLVN*LNGRSDGLRVKMHS Trigger: GGAGTGCATTTTAACTCTCAGGCCATCGCTCCTACCATTGAGCAAATTGACCAGTCTTTTGGCGCAACCCATCCTGGAGGGCTCCTGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124113.8
CDS TCA 72 bp	GAATGTGGAGCCAAACGGATTGGTGTTATTTGGGGATaGGGACCTGTGCAAGACAACAGGCTTCTCCACAGG	+
Preference number: 6 (lower is better) Translates to: ECGAKRIGVIWG*GPVQDNRLLHR Trigger: CCTGTGGAGAAGCCTGTTGTCTTGCACAGGTCCTCATCCCCAAATAACACCAATCCGTTTGGCTCCACATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034361.10
CDS CAA 72 bp	CCCTCCAGGATGGGTTGCGCCAAAAGACTGGTCAATTaGCTCAATGGTAGGAGCGATGGCCTGAGAGTTAAA	+
Preference number: 6 (lower is better) Translates to: PSRMGCAKRLVN*LNGRSDGLRVK Trigger: TTTAACTCTCAGGCCATCGCTCCTACCATTGAGCAAATTGACCAGTCTTTTGGCGCAACCCATCCTGGAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124113.8
CDS CAA 72 bp	CACTCCAGGATGGGTTGCGCCAAAAGACTGGTCAATTaGCTCAATGGTAGGAGCGATGGCCTGAGAGTTAAA	+
Preference number: 6 (lower is better) Translates to: HSRMGCAKRLVN*LNGRSDGLRVK Trigger: TTTAACTCTCAGGCCATCGCTCCTACCATTGAGCAAATTGACCAGTCTTTTGGCGCAACCCATCCTGGAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034361.10 ENSMUST00000132964.2 ENSMUST00000141957.8
CDS GCA 72 bp	GAAGCTCCTGGATGCTGTCCCACTTGCTGTAGGTTGTaGATATTTCAGTCTGACCACCTGCATTTTCTTTCT	+
Preference number: 6 (lower is better) Translates to: EAPGCCPTCCRL*IFQSDHLHFLS Trigger: AGAAAGAAAATGCAGGTGGTCAGACTGAAATATGCACAACCTACAGCAAGTGGGACAGCATCCAGGAGCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034361.10
CDS CCA 72 bp	ACTTTGTGTGGAGAGCCAAGCATGCTAAGAACATCTTaGCAAGAATCACCAAAATACACCGCACGCTCAAAT	+
Preference number: 6 (lower is better) Translates to: TLCGEPSMLRTS*QESPKYTARSN Trigger: ATTTGAGCGTGCGGTGTATTTTGGTGATTCTTGCCAAGATGTTCTTAGCATGCTTGGCTCTCCACACAAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034361.10
CDS CCA 72 bp	AGTCTGACCACCTGCATTTTCTTTCTTTATGGCCAGTaGGATCTTGAACTCACAGCGGTGGTAAATGTTAAA	+
Preference number: 6 (lower is better) Translates to: SLTTCIFFLYGQ*DLELTAVVNVK Trigger: TTTAACATTTACCACCGCTGTGAGTTCAAGATCCCACTGGCCATAAAGAAAGAAAATGCAGGTGGTCAGACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034361.10
CDS GCA 72 bp	GGTATGCAGGACAAACTTCTTCACTTTGTGTGTATTTaGATCAAACAGGATGTCCACTCCGAGAGTAAAATA	+
Preference number: 6 (lower is better) Translates to: GMQDKLLHFVCI*IKQDVHSESKI Trigger: TATTTTACTCTCGGAGTGGACATCCTGTTTGATGCAAATACACACAAAGTGAAGAAGTTTGTCCTGCATACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034361.10