RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PGRMC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006373

Ensembl transcript IDs: ENSMUST00000073339.7

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTAGTTCCAACTGTCAATGACCATGTGTGTGAGAGTTACTGTGTGTaGGAGAGTGTCCACATGCAGACATGGATGATAAATCAGTCCACG +
Preference number: 1 (lower is better)
Translates to: LVPTVNDHVCESYCV*ESVHMQTWMINQST
Trigger: CGTGGACTGATTTATCATCCATGTCTGCATGTGGACACTCTCCCACACACAGTAACTCTCACACACATGGTCATTGACAGTTGGAACTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
3UTR-3UTR GCA 90 bp GAGTGTCCACATGCAGACATGGATGATAAATCAGTCCACGAACACAGGCAATGGTTTGACCAGTGTGTGTaGACTTACCATTTTGACCAG +
Preference number: 2 (lower is better)
Translates to: ECPHADMDDKSVHEHRQWFDQCV*TYHFDQ
Trigger: CTGGTCAAAATGGTAAGTGCACACACACTGGTCAAA...CCATTGCCTGTGTTCGTGGACTGATTTATCATCCATGTCTGCATGTGGACACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
3UTR-3UTR TCA 90 bp TCAGAGATGTCAGTGAAGGCTTTTGGAAAAGCACATACCTGTTCCTGCCCTGTAGGACATTTACCATTTTaGCCAGTGTGTGTGCACTTA +
Preference number: 2 (lower is better)
Translates to: SEMSVKAFGKAHTCSCPVGHLPF*PVCVHL
Trigger: TAAGTGCACACACACTGGTCAAAATGGTAAATGTCC...TACAGGGCAGGAACAGGTATGTGCTTTTCCAAAAGCCTTCACTGACATCTCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
3UTR-3UTR GCA 90 bp GAGTGTCCACATGCAGACATGGATGATAAATCAGTCCACGAACACAGGCAATGGAATAGCTTTACCATTTaGATTACAGCACTGAACTTC +
Preference number: 2 (lower is better)
Translates to: ECPHADMDDKSVHEHRQWNSFTI*ITALNF
Trigger: GAAGTTCAGTGCTGTAATGCAAATGGTAAAGCTATT...CCATTGCCTGTGTTCGTGGACTGATTTATCATCCATGTCTGCATGTGGACACTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
3UTR-3UTR CCA 90 bp GAAGGATTTAAGTGTTACCTTAGGAATGAATGTATTGTCCTTTCAAACTCACCCGAGAGTTACTGTGTGTaGGAGAGTGTCCACATGCAG +
Preference number: 2 (lower is better)
Translates to: EGFKCYLRNECIVLSNSPESYCV*ESVHMQ
Trigger: CTGCATGTGGACACTCTCCCACACACAGTAACTCTC...GGGTGAGTTTGAAAGGACAATACATTCATTCCTAAGGTAACACTTAAATCCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
3UTR-3UTR TCA 90 bp GATTTAAGTGTTACCTTAGGAATGAATGTATTGTCCTTTCAAACTCACCCAGCTAGCATGGCTACACGCTaGTCCTTCTTCATTCTTAGG +
Preference number: 2 (lower is better)
Translates to: DLSVTLGMNVLSFQTHPASMATR*SFFILR
Trigger: CCTAAGAATGAAGAAGGATCAGCGTGTAGCCATGCT...AGCTGGGTGAGTTTGAAAGGACAATACATTCATTCCTAAGGTAACACTTAAATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
3UTR-3UTR GCA 90 bp TCAGAGATGTCAGTGAAGGCTTTTGGAAAAGCACATACCTGTTCCTGCCCTGTACATACAAACACATCATaGATTCTAAGACGAGTTGAT +
Preference number: 2 (lower is better)
Translates to: SEMSVKAFGKAHTCSCPVHTNTS*ILRRVD
Trigger: ATCAACTCGTCTTAGAATGCATGATGTGTTTGTATG...TACAGGGCAGGAACAGGTATGTGCTTTTCCAAAAGCCTTCACTGACATCTCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
3UTR-3UTR CCA 90 bp ATGTATTGTCCTTTCAAACTCACCCAGCTAGTGCCATGTAGTGTTTTCTCATTCGTCAGTGAAGGCTTTTaGAAAAGCACATACCTGTTC +
Preference number: 2 (lower is better)
Translates to: MYCPFKLTQLVPCSVFSFVSEGF*KSTYLF
Trigger: GAACAGGTATGTGCTTTTCCAAAAGCCTTCACTGAC...GAATGAGAAAACACTACATGGCACTAGCTGGGTGAGTTTGAAAGGACAATACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
3UTR-3UTR CCA 90 bp ATGTATTGTCCTTTCAAACTCACCCAGCTAGTGCCATGTAGTGTTTTCTCATTCGTCAGTTGGGTAAAATaGGCTTGTTTTAGAATACAG +
Preference number: 2 (lower is better)
Translates to: MYCPFKLTQLVPCSVFSFVSWVK*ACFRIQ
Trigger: CTGTATTCTAAAACAAGCCCATTTTACCCAACTGAC...GAATGAGAAAACACTACATGGCACTAGCTGGGTGAGTTTGAAAGGACAATACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
3UTR CCA 72 bp AGTTACTGTGTGTGGGAGAGTGTCCACATGCAGACATaGATGATAAATCAGTCCACGAACACAGGCAATGGG +
Preference number: 3 (lower is better)
Translates to: SYCVWESVHMQT*MINQSTNTGNG
Trigger: CCCATTGCCTGTGTTCGTGGACTGATTTATCATCCATGTCTGCATGTGGACACTCTCCCACACACAGTAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
3UTR-3UTR CAA 90 bp AGTGTCCACATGCAGACATGGATGATAAATCAGTCCACGAACACAGGCAATGGGAGGACATTTACCATTTaGACCAGTGTGTGTGCACTT +
Preference number: 3 (lower is better)
Translates to: SVHMQTWMINQSTNTGNGRTFTI*TSVCAL
Trigger: AAGTGCACACACACTGGTCAAAATGGTAAATGTCCT...CCCATTGCCTGTGTTCGTGGACTGATTTATCATCCATGTCTGCATGTGGACACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
3UTR-3UTR CAA 90 bp TGTCCACATGCAGACATGGATGATAAATCAGTCCACGAACACAGGCAATGGGTTATGCAGTTAAGTCAGTaGGGTAAAATGGGCTTGTTT +
Preference number: 3 (lower is better)
Translates to: CPHADMDDKSVHEHRQWVMQLSQ*GKMGLF
Trigger: AAACAAGCCCATTTTACCCAACTGACTTAACTGCAT...AACCCATTGCCTGTGTTCGTGGACTGATTTATCATCCATGTCTGCATGTGGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
3UTR-3UTR CAA 90 bp TCAGAGATGTCAGTGAAGGCTTTTGGAAAAGCACATACCTGTTCCTGCCCTGTATTGCAAAGTTCTCCTTaGGATTTTCCGATGCTGTTT +
Preference number: 3 (lower is better)
Translates to: SEMSVKAFGKAHTCSCPVLQSSP*DFPMLF
Trigger: AAACAGCATCGGAAAATCCAAAGGAGAACTTTGCAA...TACAGGGCAGGAACAGGTATGTGCTTTTCCAAAAGCCTTCACTGACATCTCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
3UTR TCA 72 bp AATGGGCTTGTTTTAGAATACAGCATGGCTACACGCTaGTCCTTCTTCATTCTTAGGACATTTACCATTTTG +
Preference number: 3 (lower is better)
Translates to: NGLVLEYSMATR*SFFILRTFTIL
Trigger: CAAAATGGTAAATGTCCTAAGAATGAAGAAGGATCAGCGTGTAGCCATGCTGTATTCTAAAACAAGCCCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS-3UTR CCA 90 bp GAGTGTCCACATGCAGACATGGATGATAAATCAGTCCACGAACACAGGCAATGGGCGGGGCAGCGGGGGTaGTTCGTCGTCGTCGTTGTC +
Preference number: 4 (lower is better)
Translates to: ECPHADMDDKSVHEHRQWAGQRG*FVVVVV
Trigger: GACAACGACGACGACGAACCACCCCCGCTGCCCCGC...CCATTGCCTGTGTTCGTGGACTGATTTATCATCCATGTCTGCATGTGGACACTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS-3UTR CCA 90 bp TGTCCACATGCAGACATGGATGATAAATCAGTCCACGAACACAGGCAATGGGTTAGAATGCGCGGGTCCTaGACGCCATCGAAACGCCTC +
Preference number: 4 (lower is better)
Translates to: CPHADMDDKSVHEHRQWVRMRGS*TPSKRL
Trigger: GAGGCGTTTCGATGGCGTCCAGGACCCGCGCATTCT...AACCCATTGCCTGTGTTCGTGGACTGATTTATCATCCATGTCTGCATGTGGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS-3UTR GCA 90 bp TGTCCACATGCAGACATGGATGATAAATCAGTCCACGAACACAGGCAATGGGTTTCACTCAGGGTCTCCTaGTGTGCAGGGGTGAGGTCA +
Preference number: 4 (lower is better)
Translates to: CPHADMDDKSVHEHRQWVSLRVS*CAGVRS
Trigger: TGACCTCACCCCTGCACAGCAGGAGACCCTGAGTGA...AACCCATTGCCTGTGTTCGTGGACTGATTTATCATCCATGTCTGCATGTGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS-3UTR CCA 90 bp GATTTAAGTGTTACCTTAGGAATGAATGTATTGTCCTTTCAAACTCACCCAGCTCGTCGTTGTCGCCACTaGCACCGGGCTGGTCCCCGC +
Preference number: 4 (lower is better)
Translates to: DLSVTLGMNVLSFQTHPARRCRH*HRAGPR
Trigger: GCGGGGACCAGCCCGGTGCCAGTGGCGACAACGACG...AGCTGGGTGAGTTTGAAAGGACAATACATTCATTCCTAAGGTAACACTTAAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS-3UTR GCA 90 bp ATGTATTGTCCTTTCAAACTCACCCAGCTAGTGCCATGTAGTGTTTTCTCATTCGACGTGAAAATCTCGTaGAGCAGCCCGCCGCCCTCT +
Preference number: 4 (lower is better)
Translates to: MYCPFKLTQLVPCSVFSFDVKIS*SSPPPS
Trigger: AGAGGGCGGCGGGCTGCTGCACGAGATTTTCACGTC...GAATGAGAAAACACTACATGGCACTAGCTGGGTGAGTTTGAAAGGACAATACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS-3UTR GCA 90 bp ATGTATTGTCCTTTCAAACTCACCCAGCTAGTGCCATGTAGTGTTTTCTCATTCTGTAGAGCAGGAAGATaGAGAGGCCCAGGAGGAGCA +
Preference number: 4 (lower is better)
Translates to: MYCPFKLTQLVPCSVFSFCRAGR*RGPGGA
Trigger: TGCTCCTCCTGGGCCTCTGCATCTTCCTGCTCTACA...GAATGAGAAAACACTACATGGCACTAGCTGGGTGAGTTTGAAAGGACAATACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS-3UTR CCA 90 bp ATGTATTGTCCTTTCAAACTCACCCAGCTAGTGCCATGTAGTGTTTTCTCATTCATGTGGCAAGGCCCCTaGATGCATCTCTTCCGGCAA +
Preference number: 4 (lower is better)
Translates to: MYCPFKLTQLVPCSVFSFMWQGP*MHLFRQ
Trigger: TTGCCGGAAGAGATGCATCCAGGGGCCTTGCCACAT...GAATGAGAAAACACTACATGGCACTAGCTGGGTGAGTTTGAAAGGACAATACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS-3UTR TCA 90 bp GAAGGATTTAAGTGTTACCTTAGGAATGAATGTATTGTCCTTTCAAACTCACCCCCTGCTGTGCAGGGGTaGGGTCAGAAAGGTCGTCAT +
Preference number: 4 (lower is better)
Translates to: EGFKCYLRNECIVLSNSPPAVQG*GQKGRH
Trigger: ATGACGACCTTTCTGACCTCACCCCTGCACAGCAGG...GGGTGAGTTTGAAAGGACAATACATTCATTCCTAAGGTAACACTTAAATCCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS-3UTR GCA 90 bp ATGTATTGTCCTTTCAAACTCACCCAGCTAGTGCCATGTAGTGTTTTCTCATTCATACTCATCCTTCAGTaGTTCTTTGTCCAGGCAAAA +
Preference number: 4 (lower is better)
Translates to: MYCPFKLTQLVPCSVFSFILILQ*FFVQAK
Trigger: TTTTGCCTGGACAAAGAAGCACTGAAGGATGAGTAT...GAATGAGAAAACACTACATGGCACTAGCTGGGTGAGTTTGAAAGGACAATACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
3UTR CAA 72 bp TTTACCATTTTGACCAGTGTGTGTGCACTTACCATTTaGACCAGTATGTGGAAATACCCAAGTTTTCCCTCT +
Preference number: 4 (lower is better)
Translates to: FTILTSVCALTI*TSMWKYPSFPS
Trigger: AGAGGGAAAACTTGGGTATTTCCACATACTGGTCAAAATGGTAAGTGCACACACACTGGTCAAAATGGTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS GCA 90 bp CAGAGGCCCAGGAGGAGCAGGTTGAGAGGAGACGTGAAAATCTCGTaGAGCAGCCCGCCGCCCTCTAGCTCGCTCGGGTCGGCGCCAGTC +
Preference number: 5 (lower is better)
Translates to: QRPRRSRLRGDVKIS*SSPPPSSSLGSAPV
Trigger: GACTGGCGCCGACCCGAGCGAGCTAGAGGGCGGCGGGCTGCTGCACGAGATTTTCACGTCTCCTCTCAACCTGCTCCTCCTGGGCCTCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS-3UTR CAA 90 bp ATGTATTGTCCTTTCAAACTCACCCAGCTAGTGCCATGTAGTGTTTTCTCATTCGTGAAGTCGCGCCGCTaGAGGCGGGGCAGCGGGGGT +
Preference number: 5 (lower is better)
Translates to: MYCPFKLTQLVPCSVFSFVKSRR*RRGSGG
Trigger: ACCCCCGCTGCCCCGCCTCAAGCGGCGCGACTTCAC...GAATGAGAAAACACTACATGGCACTAGCTGGGTGAGTTTGAAAGGACAATACAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS-3UTR CAA 90 bp ATGTATTGTCCTTTCAAACTCACCCAGCTAGTGCCATGTAGTGTTTTCTCATTCGGTTCGTCGTCGTCGTaGTCGCCACTGGCACCGGGC +
Preference number: 5 (lower is better)
Translates to: MYCPFKLTQLVPCSVFSFGSSSS*SPLAPG
Trigger: GCCCGGTGCCAGTGGCGACAACGACGACGACGAACC...GAATGAGAAAACACTACATGGCACTAGCTGGGTGAGTTTGAAAGGACAATACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS-3UTR CAA 90 bp TGTCCACATGCAGACATGGATGATAAATCAGTCCACGAACACAGGCAATGGGTTTCGAACACCTTGCCGTaGATGGCCATGAGAATGCGC +
Preference number: 5 (lower is better)
Translates to: CPHADMDDKSVHEHRQWVSNTLP*MAMRMR
Trigger: GCGCATTCTCATGGCCATCAACGGCAAGGTGTTCGA...AACCCATTGCCTGTGTTCGTGGACTGATTTATCATCCATGTCTGCATGTGGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS-3UTR CAA 90 bp TGTCCACATGCAGACATGGATGATAAATCAGTCCACGAACACAGGCAATGGGTTGAGCTGTCTCGTCTTTaGGTTCTTCATCATCTGAGT +
Preference number: 5 (lower is better)
Translates to: CPHADMDDKSVHEHRQWVELSRL*VLHHLS
Trigger: ACTCAGATGATGAAGAACCAAAAGACGAGACAGCTC...AACCCATTGCCTGTGTTCGTGGACTGATTTATCATCCATGTCTGCATGTGGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS-3UTR CAA 90 bp GAAGGATTTAAGTGTTACCTTAGGAATGAATGTATTGTCCTTTCAAACTCACCCGTCACGTCGAACACCTaGCCGTTGATGGCCATGAGA +
Preference number: 5 (lower is better)
Translates to: EGFKCYLRNECIVLSNSPVTSNT*PLMAMR
Trigger: TCTCATGGCCATCAACGGCAAGGTGTTCGACGTGAC...GGGTGAGTTTGAAAGGACAATACATTCATTCCTAAGGTAACACTTAAATCCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS CCA 72 bp GGTGAAGTCGCGCCGCTTGAGGCGGGGCAGCGGGGGTaGTTCGTCGTCGTCGTTGTCGCCACTGGCACCGGG +
Preference number: 6 (lower is better)
Translates to: GEVAPLEAGQRG*FVVVVVATGTG
Trigger: CCCGGTGCCAGTGGCGACAACGACGACGACGAACCACCCCCGCTGCCCCGCCTCAAGCGGCGCGACTTCACC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS CCA 72 bp GCAGCGGGGGTGGTTCGTCGTCGTCGTTGTCGCCACTaGCACCGGGCTGGTCCCCGCGAACGATCTTGTAGA +
Preference number: 6 (lower is better)
Translates to: AAGVVRRRRCRH*HRAGPRERSCR
Trigger: TCTACAAGATCGTTCGCGGGGACCAGCCCGGTGCCAGTGGCGACAACGACGACGACGAACCACCCCCGCTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7
CDS GCA 72 bp AGGAGGAGCAGGTTGAGAGGAGACGTGAAAATCTCGTaGAGCAGCCCGCCGCCCTCTAGCTCGCTCGGGTCG +
Preference number: 6 (lower is better)
Translates to: RRSRLRGDVKIS*SSPPPSSSLGS
Trigger: CGACCCGAGCGAGCTAGAGGGCGGCGGGCTGCTGCACGAGATTTTCACGTCTCCTCTCAACCTGCTCCTCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073339.7