Pregenerated sensors for PGK1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062070Ensembl transcript IDs: ENSMUST00000081593.13, ENSMUST00000135949.2
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTACAGCTGGGATTTCATCAGATTGCCATGCTGAGTCAAGAACAGTaGGTGACGAAGCTAACCAGAGGCTACATACGTCAGAGAGAGAGC | + |
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Preference number: 1 (lower is better) Translates to: LQLGFHQIAMLSQEQ*VTKLTRGYIRQRES Trigger: GCTCTCTCTCTGACGTATGTAGCCTCTGGTTAGCTTCGTCACTCACTGTTCTTGACTCAGCATGGCAATCTGATGAAATCCCAGCTGTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081593.13 ENSMUST00000135949.2 |
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| 3UTR-3UTR CCA 90 bp | CTACATACGTCAGAGAGAGAGCTCAGCCTTTACAGCTCACTTCCTTTCTCAGGCCTGTTTAAGGGTTCCTaGTGCCACATCTCAGCCACT | + |
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Preference number: 2 (lower is better) Translates to: LHTSERELSLYSSLPFSGLFKGS*CHISAT Trigger: AGTGGCTGAGATGTGGCACCAGGAACCCTTAAACAG...GCCTGAGAAAGGAAGTGAGCTGTAAAGGCTGAGCTCTCTCTCTGACGTATGTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081593.13 ENSMUST00000135949.2 |
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| 3UTR-3UTR GCA 90 bp | GATTGCCATGCTGAGTCAAGAACAGTGAGTGACGAAGCTAACCAGAGGCTACATCCATTCCAAACAATCTaGTTAGCTCGACCCACAGCC | + |
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Preference number: 2 (lower is better) Translates to: DCHAESRTVSDEANQRLHPFQTI*LARPTA Trigger: GGCTGTGGGTCGAGCTAAGCAGATTGTTTGGAATGG...ATGTAGCCTCTGGTTAGCTTCGTCACTCACTGTTCTTGACTCAGCATGGCAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135949.2 |
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| 3UTR-3UTR CCA 90 bp | GATTGCCATGCTGAGTCAAGAACAGTGAGTGACGAAGCTAACCAGAGGCTACATCTGTTTAAGGGTTCCTaGTGCCACATCTCAGCCACT | + |
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Preference number: 2 (lower is better) Translates to: DCHAESRTVSDEANQRLHLFKGS*CHISAT Trigger: AGTGGCTGAGATGTGGCACCAGGAACCCTTAAACAG...ATGTAGCCTCTGGTTAGCTTCGTCACTCACTGTTCTTGACTCAGCATGGCAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081593.13 ENSMUST00000135949.2 |
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| 3UTR-3UTR TCA 90 bp | ACATACGTCAGAGAGAGAGCTCAGCCTTTACAGCTCACTTCCTTTCTCAGGCAGAACACAGACAAATCCTaGTGCAGTAAAGACGAGCTG | + |
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Preference number: 2 (lower is better) Translates to: TYVRERAQPLQLTSFLRQNTDKS*CSKDEL Trigger: CAGCTCGTCTTTACTGCATCAGGATTTGTCTGTGTT...CTGCCTGAGAAAGGAAGTGAGCTGTAAAGGCTGAGCTCTCTCTCTGACGTATGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081593.13 ENSMUST00000135949.2 |
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| 3UTR-3UTR GCA 90 bp | CTACATACGTCAGAGAGAGAGCTCAGCCTTTACAGCTCACTTCCTTTCTCAGGCCCACTAGCTGAATCTTaGGCTAACACCAAATGGAGA | + |
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Preference number: 2 (lower is better) Translates to: LHTSERELSLYSSLPFSGPLAES*ANTKWR Trigger: TCTCCATTTGGTGTTAGCGCAAGATTCAGCTAGTGG...GCCTGAGAAAGGAAGTGAGCTGTAAAGGCTGAGCTCTCTCTCTGACGTATGTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081593.13 ENSMUST00000135949.2 |
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| 3UTR-3UTR TCA 90 bp | GGGATTTCATCAGATTGCCATGCTGAGTCAAGAACAGTGAGTGACGAAGCTAACTGGAAAACACTAGGTTaGCTTAGGAGCACAGGAACC | + |
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Preference number: 2 (lower is better) Translates to: GISSDCHAESRTVSDEANWKTLG*LRSTGT Trigger: GGTTCCTGTGCTCCTAAGTCAACCTAGTGTTTTCCA...GTTAGCTTCGTCACTCACTGTTCTTGACTCAGCATGGCAATCTGATGAAATCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081593.13 ENSMUST00000135949.2 |
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| 3UTR-3UTR GCA 90 bp | ATACGTCAGAGAGAGAGCTCAGCCTTTACAGCTCACTTCCTTTCTCAGGCAGAACCACTAGCTGAATCTTaGGCTAACACCAAATGGAGA | + |
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Preference number: 2 (lower is better) Translates to: IRQRESSAFTAHFLSQAEPLAES*ANTKWR Trigger: TCTCCATTTGGTGTTAGCGCAAGATTCAGCTAGTGG...TTCTGCCTGAGAAAGGAAGTGAGCTGTAAAGGCTGAGCTCTCTCTCTGACGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081593.13 ENSMUST00000135949.2 |
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| 3UTR-3UTR CCA 90 bp | AGAGGCTACATACGTCAGAGAGAGAGCTCAGCCTTTACAGCTCACTTCCTTTCTCTGCAGACTTACAGCTaGGATTTCATCAGATTGCCA | + |
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Preference number: 2 (lower is better) Translates to: RGYIRQRESSAFTAHFLSLQTYS*DFIRLP Trigger: TGGCAATCTGATGAAATCCCAGCTGTAAGTCTGCAG...AGAAAGGAAGTGAGCTGTAAAGGCTGAGCTCTCTCTCTGACGTATGTAGCCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081593.13 ENSMUST00000135949.2 |
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| 3UTR-3UTR TCA 90 bp | TCAATTTCTGCAGACTTACAGCTGGGATTTCATCAGATTGCCATGCTGAGTCAATGGAAAACACTAGGTTaGCTTAGGAGCACAGGAACC | + |
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Preference number: 2 (lower is better) Translates to: SISADLQLGFHQIAMLSQWKTLG*LRSTGT Trigger: GGTTCCTGTGCTCCTAAGTCAACCTAGTGTTTTCCA...TTGACTCAGCATGGCAATCTGATGAAATCCCAGCTGTAAGTCTGCAGAAATTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081593.13 ENSMUST00000135949.2 |
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| 3UTR-3UTR TCA 90 bp | TCAATTTCTGCAGACTTACAGCTGGGATTTCATCAGATTGCCATGCTGAGTCAAAACACAGACAAATCCTaGTGCAGTAAAGACGAGCTG | + |
|
Preference number: 2 (lower is better) Translates to: SISADLQLGFHQIAMLSQNTDKS*CSKDEL Trigger: CAGCTCGTCTTTACTGCATCAGGATTTGTCTGTGTT...TTGACTCAGCATGGCAATCTGATGAAATCCCAGCTGTAAGTCTGCAGAAATTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081593.13 ENSMUST00000135949.2 |
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| 3UTR-3UTR GCA 90 bp | ACATACGTCAGAGAGAGAGCTCAGCCTTTACAGCTCACTTCCTTTCTCAGGCAGCATCATACAGAGATGTaGCAATCTATACAAGAAAGT | + |
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Preference number: 2 (lower is better) Translates to: TYVRERAQPLQLTSFLRQHHTEM*QSIQES Trigger: ACTTTCTTGTATAGATTGGCACATCTCTGTATGATG...CTGCCTGAGAAAGGAAGTGAGCTGTAAAGGCTGAGCTCTCTCTCTGACGTATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135949.2 |
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| 3UTR-3UTR CAA 90 bp | ACATACGTCAGAGAGAGAGCTCAGCCTTTACAGCTCACTTCCTTTCTCAGGCAGCCATTTTTCTCAGCTTaGGACATGAGATCTTTGACA | + |
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Preference number: 3 (lower is better) Translates to: TYVRERAQPLQLTSFLRQPFFSA*DMRSLT Trigger: TGTCAAAGATCTCATGTCCAAAGCTGAGAAAAATGG...CTGCCTGAGAAAGGAAGTGAGCTGTAAAGGCTGAGCTCTCTCTCTGACGTATGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135949.2 |
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| 3UTR GCA 72 bp | AATTTCTGCAGACTTACAGCTGGGATTTCATCAGATTaGCATGCTGAGTCAAGAACAGTGAGTGACGAAGCT | + |
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Preference number: 3 (lower is better) Translates to: NFCRLTAGISSD*HAESRTVSDEA Trigger: AGCTTCGTCACTCACTGTTCTTGACTCAGCATGGCAATCTGATGAAATCCCAGCTGTAAGTCTGCAGAAATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081593.13 ENSMUST00000135949.2 |
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| CDS-3UTR CCA 90 bp | GATTGCCATGCTGAGTCAAGAACAGTGAGTGACGAAGCTAACCAGAGGCTACATGGCATTCTCGACTTCTaGGCCCACACAATCCTTCAA | + |
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Preference number: 4 (lower is better) Translates to: DCHAESRTVSDEANQRLHGILDF*AHTILQ Trigger: TTGAAGGATTGTGTGGGCCCAGAAGTCGAGAATGCC...ATGTAGCCTCTGGTTAGCTTCGTCACTCACTGTTCTTGACTCAGCATGGCAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081593.13 ENSMUST00000135949.2 |
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| CDS-3UTR GCA 90 bp | ATACGTCAGAGAGAGAGCTCAGCCTTTACAGCTCACTTCCTTTCTCAGGCAGAACCTCGGCATATTTCTTaGTGCTCTCAGTACCACAGT | + |
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Preference number: 4 (lower is better) Translates to: IRQRESSAFTAHFLSQAEPRHIS*CSQYHS Trigger: ACTGTGGTACTGAGAGCAGCAAGAAATATGCCGAGG...TTCTGCCTGAGAAAGGAAGTGAGCTGTAAAGGCTGAGCTCTCTCTCTGACGTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081593.13 |
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| CDS-3UTR GCA 90 bp | CAGAGAGAGAGCTCAGCCTTTACAGCTCACTTCCTTTCTCAGGCAGAATATAAACAGCTGGATCTTGTCTaGAACTTTAGCGCCTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: QRESSAFTAHFLSQAEYKQLDLV*NFSASQ Trigger: TTGGGAGGCGCTAAAGTTGCAGACAAGATCCAGCTG...TTTATATTCTGCCTGAGAAAGGAAGTGAGCTGTAAAGGCTGAGCTCTCTCTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081593.13 ENSMUST00000135949.2 |
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| CDS-3UTR GCA 90 bp | CAGAGAGAGAGCTCAGCCTTTACAGCTCACTTCCTTTCTCAGGCAGAATATAAACCATTCCAAACAATCTaGTTAGCTCGACCCACAGCC | + |
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Preference number: 4 (lower is better) Translates to: QRESSAFTAHFLSQAEYKPFQTI*LARPTA Trigger: GGCTGTGGGTCGAGCTAAGCAGATTGTTTGGAATGG...TTTATATTCTGCCTGAGAAAGGAAGTGAGCTGTAAAGGCTGAGCTCTCTCTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081593.13 |
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| CDS-3UTR GCA 90 bp | TCAATTTCTGCAGACTTACAGCTGGGATTTCATCAGATTGCCATGCTGAGTCAACAGCTGGATCTTGTCTaGAACTTTAGCGCCTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: SISADLQLGFHQIAMLSQQLDLV*NFSASQ Trigger: TTGGGAGGCGCTAAAGTTGCAGACAAGATCCAGCTG...TTGACTCAGCATGGCAATCTGATGAAATCCCAGCTGTAAGTCTGCAGAAATTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081593.13 ENSMUST00000135949.2 |
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| CDS-3UTR CCA 90 bp | TCAATTTCTGCAGACTTACAGCTGGGATTTCATCAGATTGCCATGCTGAGTCAAGGCATTCTCGACTTCTaGGCCCACACAATCCTTCAA | + |
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Preference number: 4 (lower is better) Translates to: SISADLQLGFHQIAMLSQGILDF*AHTILQ Trigger: TTGAAGGATTGTGTGGGCCCAGAAGTCGAGAATGCC...TTGACTCAGCATGGCAATCTGATGAAATCCCAGCTGTAAGTCTGCAGAAATTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081593.13 ENSMUST00000135949.2 |
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| CDS-3UTR CAA 90 bp | ACATACGTCAGAGAGAGAGCTCAGCCTTTACAGCTCACTTCCTTTCTCAGGCAGGCCTCGGCATATTTCTaGCTGCTCTCAGTACCACAG | + |
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Preference number: 5 (lower is better) Translates to: TYVRERAQPLQLTSFLRQASAYF*LLSVPQ Trigger: CTGTGGTACTGAGAGCAGCAAGAAATATGCCGAGGC...CTGCCTGAGAAAGGAAGTGAGCTGTAAAGGCTGAGCTCTCTCTCTGACGTATGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081593.13 |
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| CDS-3UTR CAA 90 bp | AGAGGCTACATACGTCAGAGAGAGAGCTCAGCCTTTACAGCTCACTTCCTTTCTCCATTTTTCTCAGCTTaGGACATGAGATCTTTGACA | + |
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Preference number: 5 (lower is better) Translates to: RGYIRQRESSAFTAHFLSPFFSA*DMRSLT Trigger: TGTCAAAGATCTCATGTCCAAAGCTGAGAAAAATGG...AGAAAGGAAGTGAGCTGTAAAGGCTGAGCTCTCTCTCTGACGTATGTAGCCTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081593.13 |
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