Pregenerated sensors for PGGT1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024477Ensembl transcript IDs: ENSMUST00000025354.5, ENSMUST00000235465.2, ENSMUST00000236216.2, ENSMUST00000236368.2, ENSMUST00000236999.2
Found 122 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGTGATGTCGCAGGGGCCTTGCAGTGCCTTCTGTGCTCCTGTCTGTaGGGAGCTGCTCTCTTATTTTACCATCAGGAACCGACTGCATTC | + |
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Preference number: 1 (lower is better) Translates to: GDVAGALQCLLCSCL*GAALLFYHQEPTAF Trigger: GAATGCAGTCGGTTCCTGATGGTAAAATAAGAGAGCAGCTCCTCACAGACAGGAGCACAGAAGGCACTGCAAGGCCCCTGCGACATCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR GCA 90 bp | AGAAATGCGCTGACTGCCTTTTCAAGGGTGATGTCGCAGGGGCCTTaGAGTGCCTTCTGTGCTCCTGTCTGTGAGGAGCTGCTCTCTTAT | + |
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Preference number: 1 (lower is better) Translates to: RNALTAFSRVMSQGP*SAFCAPVCEELLSY Trigger: ATAAGAGAGCAGCTCCTCACAGACAGGAGCACAGAAGGCACTGCAAGGCCCCTGCGACATCACCCTTGAAAAGGCAGTCAGCGCATTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR CCA 90 bp | GCCCTAGCCAGTCCTGATCGAGCCAGTCCTGATAGCGTTTACTTTTaGGCAGGGAGGAAGTTGCTGAAAGAGAGAGATTTCAGACACCAC | + |
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Preference number: 1 (lower is better) Translates to: ALASPDRASPDSVYF*AGRKLLKERDFRHH Trigger: GTGGTGTCTGAAATCTCTCTCTTTCAGCAACTTCCTCCCTGCCCAAAAGTAAACGCTATCAGGACTGGCTCGATCAGGACTGGCTAGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR GCA 90 bp | CGCAGGGGCCTTGCAGTGCCTTCTGTGCTCCTGTCTGTGAGGAGCTaGTCTCTTATTTTACCATCAGGAACCGACTGCATTCTTACATTT | + |
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Preference number: 1 (lower is better) Translates to: RRGLAVPSVLLSVRS*SLILPSGTDCILTF Trigger: AAATGTAAGAATGCAGTCGGTTCCTGATGGTAAAATAAGAGAGCAGCTCCTCACAGACAGGAGCACAGAAGGCACTGCAAGGCCCCTGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR TCA 90 bp | TTCTTGCTAGTCTTCAGAAAGTACAGTAAGAGGAGGAGAGGCTGGTaGGGAGCGAATGGTGCTGTACATCTGAGCTACGTGTTCTTCCTC | + |
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Preference number: 1 (lower is better) Translates to: FLLVFRKYSKRRRGW*GANGAVHLSYVFFL Trigger: GAGGAAGAACACGTAGCTCAGATGTACAGCACCATTCGCTCCTCACCAGCCTCTCCTCCTCTTACTGTACTTTCTGAAGACTAGCAAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR TCA 90 bp | ATGCCTCTCCTGTCTCTTAGGAGGTTGGCTAATGGACTGTTTCCCTaGGCATCCTCACCATGCCAAGCAGCTTTTGAATTTCTTGCCCTT | + |
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Preference number: 1 (lower is better) Translates to: MPLLSLRRLANGLFP*ASSPCQAAFEFLAL Trigger: AAGGGCAAGAAATTCAAAAGCTGCTTGGCATGGTGAGGATGCTCAGGGAAACAGTCCATTAGCCAACCTCCTAAGAGACAGGAGAGGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR CCA 90 bp | CACGTTGGATTAAAGTTTGGTATTTGTGTGCGTGTGTGTGTGGGGTaGGGGGTAACACATGTCATGGGCATGCATATGGAGGTCATAGGA | + |
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Preference number: 1 (lower is better) Translates to: HVGLKFGICVRVCVG*GVTHVMGMHMEVIG Trigger: TCCTATGACCTCCATATGCATGCCCATGACATGTGTTACCCCCCACCCCACACACACACGCACACAAATACCAAACTTTAATCCAACGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR GCA 90 bp | AGACACCACTTAGCCCAATCTGAAACTGTGGAAATGAAGGCCTTATaGCCAGGTCTGCTAAATCCTACTGCTGCCTGCATGGTAACTACA | + |
|
Preference number: 1 (lower is better) Translates to: RHHLAQSETVEMKAL*PGLLNPTAACMVTT Trigger: TGTAGTTACCATGCAGGCAGCAGTAGGATTTAGCAGACCTGGGCATAAGGCCTTCATTTCCACAGTTTCAGATTGGGCTAAGTGGTGTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR TCA 90 bp | ACGCGTGCAAAGCATCTGTCTGAGCCTGGTGTATTTTTCTTAATATaGGGGTCTCCAGTTGCCATTTCCTGGATGACTGTCTGGCCATTT | + |
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Preference number: 1 (lower is better) Translates to: TRAKHLSEPGVFFLI*GSPVAISWMTVWPF Trigger: AAATGGCCAGACAGTCATCCAGGAAATGGCAACTGGAGACCCTCATATTAAGAAAAATACACCAGGCTCAGACAGATGCTTTGCACGCGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000235465.2 |
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| 3UTR TCA 90 bp | GAAGTTGCTGAAAGAGAGAGATTTCAGACACCACTTAGCCCAATCTaGAACTGTGGAAATGAAGGCCTTATGCCCAGGTCTGCTAAATCC | + |
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Preference number: 1 (lower is better) Translates to: EVAERERFQTPLSPI*NCGNEGLMPRSAKS Trigger: GGATTTAGCAGACCTGGGCATAAGGCCTTCATTTCCACAGTTTCAGATTGGGCTAAGTGGTGTCTGAAATCTCTCTCTTTCAGCAACTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR CCA 90 bp | GGACTAAATGCATACGCCACTATGCCTGACCCAGACATTGGATTTTaGATTAAGGATGCTCAACCTGGTAGATGGGAAATAAAACAGTTA | + |
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Preference number: 1 (lower is better) Translates to: GLNAYATMPDPDIGF*IKDAQPGRWEIKQL Trigger: TAACTGTTTTATTTCCCATCTACCAGGTTGAGCATCCTTAATCCAAAATCCAATGTCTGGGTCAGGCATAGTGGCGTATGCATTTAGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR TCA 90 bp | TTTTCACATAGACCACCTCATTCATTTCTGACTCAGCTCAGTGAATaGAATTCTATGACTTCATCTTTCCAGTGGCAGAACTGGGTCCAA | + |
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Preference number: 1 (lower is better) Translates to: FSHRPPHSFLTQLSE*NSMTSSFQWQNWVQ Trigger: TTGGACCCAGTTCTGCCACTGGAAAGATGAAGTCATAGAATTTCATTCACTGAGCTGAGTCAGAAATGAATGAGGTGGTCTATGTGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR GCA 90 bp | ATGCATCTAGATTTACAGGCTTTTCCTCCCAACAGTTATTTTAGCTaGCTCTTCTTTATGTCTCATGCCTATCCTGTGCAATCTGGATTC | + |
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Preference number: 1 (lower is better) Translates to: MHLDLQAFPPNSYFS*LFFMSHAYPVQSGF Trigger: GAATCCAGATTGCACAGGATAGGCATGAGACATAAAGAAGAGGCAGCTAAAATAACTGTTGGGAGGAAAAGCCTGTAAATCTAGATGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR GCA 90 bp | ACAGTTATTTTAGCTGCCTCTTCTTTATGTCTCATGCCTATCCTGTaGAATCTGGATTCAATTCTAGCAATTACTTCCCAGTGCTATGTT | + |
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Preference number: 1 (lower is better) Translates to: TVILAASSLCLMPIL*NLDSILAITSQCYV Trigger: AACATAGCACTGGGAAGTAATTGCTAGAATTGAATCCAGATTGCACAGGATAGGCATGAGACATAAAGAAGAGGCAGCTAAAATAACTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR GCA 90 bp | AATCTGCCTCGCTCTGCCTTCCCTGAGCTGGGAACAAGGGCTCAACCTCAGGACCTCTGTAGATCGGCCTaGCTCTGCCTTCTGAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: NLPRSAFPELGTRAQPQDLCRSA*LCLLSA Trigger: AGCACTCAGAAGGCAGAGGCAGGCCGATCTACAGAG...GTCCTGAGGTTGAGCCCTTGTTCCCAGCTCAGGGAAGGCAGAGCGAGGCAGATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR GCA 90 bp | AATCTGCCTCGCTCTGCCTTCCCTGAGCTGGGAACAAGGGCTCAACCTCAGGACGATTGTTTCTTCCCTTaGCCCAGACAAATGGCAGTC | + |
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Preference number: 2 (lower is better) Translates to: NLPRSAFPELGTRAQPQDDCFFP*PRQMAV Trigger: GACTGCCATTTGTCTGGGGCAAGGGAAGAAACAATC...GTCCTGAGGTTGAGCCCTTGTTCCCAGCTCAGGGAAGGCAGAGCGAGGCAGATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR TCA 90 bp | TCTGTGCTCCTGTCTGTGAGGAGCTGCTCTCTTATTTTACCATCAGGAACCGACAGGAGGAGAGGCTGGTaGGGAGCGAATGGTGCTGTA | + |
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Preference number: 2 (lower is better) Translates to: SVLLSVRSCSLILPSGTDRRRGW*GANGAV Trigger: TACAGCACCATTCGCTCCTCACCAGCCTCTCCTCCT...GTCGGTTCCTGATGGTAAAATAAGAGAGCAGCTCCTCACAGACAGGAGCACAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR TCA 90 bp | AATCTGCCTCGCTCTGCCTTCCCTGAGCTGGGAACAAGGGCTCAACCTCAGGACTGGCCCACTGTCCTTTaGCCTAAGAATATTGCAATG | + |
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Preference number: 2 (lower is better) Translates to: NLPRSAFPELGTRAQPQDWPTVL*PKNIAM Trigger: CATTGCAATATTCTTAGGTCAAAGGACAGTGGGCCA...GTCCTGAGGTTGAGCCCTTGTTCCCAGCTCAGGGAAGGCAGAGCGAGGCAGATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR TCA 90 bp | AATCTGCCTCGCTCTGCCTTCCCTGAGCTGGGAACAAGGGCTCAACCTCAGGACAGTCAATCTGCCCCATaGAACATCTCAGAAACACAA | + |
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Preference number: 2 (lower is better) Translates to: NLPRSAFPELGTRAQPQDSQSAP*NISETQ Trigger: TTGTGTTTCTGAGATGTTTCATGGGGCAGATTGACT...GTCCTGAGGTTGAGCCCTTGTTCCCAGCTCAGGGAAGGCAGAGCGAGGCAGATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR GCA 90 bp | AATCTGCCTCGCTCTGCCTTCCCTGAGCTGGGAACAAGGGCTCAACCTCAGGACCTAAGAATATTGCAATaGTCCCATCTACAAGGCGTC | + |
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Preference number: 2 (lower is better) Translates to: NLPRSAFPELGTRAQPQDLRILQ*SHLQGV Trigger: GACGCCTTGTAGATGGGAGCATTGCAATATTCTTAG...GTCCTGAGGTTGAGCCCTTGTTCCCAGCTCAGGGAAGGCAGAGCGAGGCAGATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR TCA 90 bp | AATCTGCCTCGCTCTGCCTTCCCTGAGCTGGGAACAAGGGCTCAACCTCAGGACCAACAAGGATTTTCTTaGAGTCCAGTACAGTGGTTA | + |
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Preference number: 2 (lower is better) Translates to: NLPRSAFPELGTRAQPQDQQGFS*SPVQWL Trigger: TAACCACTGTACTGGACTTCAAGAAAATCCTTGTTG...GTCCTGAGGTTGAGCCCTTGTTCCCAGCTCAGGGAAGGCAGAGCGAGGCAGATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR GCA 90 bp | GTCCTGGAACTTTGTAGACCAGGCTGGCCTGGAACTCAGAAATGCGCTGACTGCCTGCTCTACCCAAAGTaGTTTTCACATAGACCACCT | + |
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Preference number: 2 (lower is better) Translates to: VLELCRPGWPGTQKCADCLLYPK*FSHRPP Trigger: AGGTGGTCTATGTGAAAAGCACTTTGGGTAGAGCAG...GCAGTCAGCGCATTTCTGAGTTCCAGGCCAGCCTGGTCTACAAAGTTCCAGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR CCA 90 bp | AATCTGCCTCGCTCTGCCTTCCCTGAGCTGGGAACAAGGGCTCAACCTCAGGACCTAGTCCTTATCACATaGACCCTTATCTCTTCGATA | + |
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Preference number: 2 (lower is better) Translates to: NLPRSAFPELGTRAQPQDLVLIT*TLISSI Trigger: TATCGAAGAGATAAGGGTCCATGTGATAAGGACTAG...GTCCTGAGGTTGAGCCCTTGTTCCCAGCTCAGGGAAGGCAGAGCGAGGCAGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR GCA 90 bp | AATCTGCCTCGCTCTGCCTTCCCTGAGCTGGGAACAAGGGCTCAACCTCAGGACCAATGGTCTTCTATTTaGATTTCAGTATGGCAGTTG | + |
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Preference number: 2 (lower is better) Translates to: NLPRSAFPELGTRAQPQDQWSSI*ISVWQL Trigger: CAACTGCCATACTGAAATGCAAATAGAAGACCATTG...GTCCTGAGGTTGAGCCCTTGTTCCCAGCTCAGGGAAGGCAGAGCGAGGCAGATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR CCA 90 bp | ACCAATACCCCAGGGTTAGTCAGGTGGCAATGTGGACATTGTCTGAGCACTGTTCGCGTGCAAAGCATCTaGATGACTGTCTGGCCATTT | + |
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Preference number: 2 (lower is better) Translates to: TNTPGLVRWQCGHCLSTVRVQSI*MTVWPF Trigger: AAATGGCCAGACAGTCATCCAGATGCTTTGCACGCG...AACAGTGCTCAGACAATGTCCACATTGCCACCTGACTAACCCTGGGGTATTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025354.5 |
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| 3UTR-3UTR TCA 90 bp | TCTGTGCTCCTGTCTGTGAGGAGCTGCTCTCTTATTTTACCATCAGGAACCGACGTTGGTTTGTTAGTTTaGGGGCCAAGGATCAAAGCC | + |
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Preference number: 2 (lower is better) Translates to: SVLLSVRSCSLILPSGTDVGLLV*GPRIKA Trigger: GGCTTTGATCCTTGGCCCTCAAACTAACAAACCAAC...GTCGGTTCCTGATGGTAAAATAAGAGAGCAGCTCCTCACAGACAGGAGCACAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR TCA 90 bp | CCAGGCCCCCATCCCACTATTTCAACACTCCCCAGCCCACTGACAGGAATCTGTACTCAGCTCAGTGAATaGAATTCTATGACTTCATCT | + |
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Preference number: 2 (lower is better) Translates to: PGPHPTISTLPSPLTGICTQLSE*NSMTSS Trigger: AGATGAAGTCATAGAATTTCATTCACTGAGCTGAGT...ACAGATTCCTGTCAGTGGGCTGGGGAGTGTTGAAATAGTGGGATGGGGGCCTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR GCA 90 bp | ACCAATACCCCAGGGTTAGTCAGGTGGCAATGTGGACATTGTCTGAGCACTGTTTCATGTCATTCTCACTaGCTTCAGGAACCGCACAGA | + |
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Preference number: 2 (lower is better) Translates to: TNTPGLVRWQCGHCLSTVSCHSH*LQEPHR Trigger: TCTGTGCGGTTCCTGAAGGCAGTGAGAATGACATGA...AACAGTGCTCAGACAATGTCCACATTGCCACCTGACTAACCCTGGGGTATTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025354.5 ENSMUST00000235465.2 |
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| 3UTR CAA 90 bp | GATCGAGCCAGTCCTGATAGCGTTTACTTTTGGGCAGGGAGGAAGTaGCTGAAAGAGAGAGATTTCAGACACCACTTAGCCCAATCTGAA | + |
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Preference number: 2 (lower is better) Translates to: DRASPDSVYFWAGRK*LKERDFRHHLAQSE Trigger: TTCAGATTGGGCTAAGTGGTGTCTGAAATCTCTCTCTTTCAGCAACTTCCTCCCTGCCCAAAAGTAAACGCTATCAGGACTGGCTCGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR CAA 90 bp | CCAGCACCTAGATCAAAAACAAACACTACCAGCACCAGAGAGCCCTaGCGTTCTCTTCGAGGGCAAAGAAGCCAAGTAAAATCCAGTGTA | + |
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Preference number: 2 (lower is better) Translates to: PAPRSKTNTTSTREP*RSLRGQRSQVKSSV Trigger: TACACTGGATTTTACTTGGCTTCTTTGCCCTCGAAGAGAACGCAAGGGCTCTCTGGTGCTGGTAGTGTTTGTTTTTGATCTAGGTGCTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR GCA 90 bp | ACCAATACCCCAGGGTTAGTCAGGTGGCAATGTGGACATTGTCTGAGCACTGTTATAGCAAATGCAGGATaGGCAGTACACAAACCTCAT | + |
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Preference number: 2 (lower is better) Translates to: TNTPGLVRWQCGHCLSTVIANAG*AVHKPH Trigger: ATGAGGTTTGTGTACTGCGCATCCTGCATTTGCTAT...AACAGTGCTCAGACAATGTCCACATTGCCACCTGACTAACCCTGGGGTATTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025354.5 ENSMUST00000235465.2 |
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| 3UTR CAA 90 bp | CTACGGGAAGACTTATTTCTAACTAGGATTTGTTGGTTTGTTAGTTaGAGGGCCAAGGATCAAAGCCAGGGAACTCAGGGCTTTGTGCGT | + |
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Preference number: 2 (lower is better) Translates to: LREDLFLTRICWFVS*RAKDQSQGTQGFVR Trigger: ACGCACAAAGCCCTGAGTTCCCTGGCTTTGATCCTTGGCCCTCAAACTAACAAACCAACAAATCCTAGTTAGAAATAAGTCTTCCCGTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR CCA 90 bp | TTTCTAACTAGGATTTGTTGGTTTGTTAGTTTGAGGGCCAAGGATCAAAGCCAGTTGCTCTGGCTGGCCTaGAACTCACTCTGTAGACCA | + |
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Preference number: 2 (lower is better) Translates to: FLTRICWFVSLRAKDQSQLLWLA*NSLCRP Trigger: TGGTCTACAGAGTGAGTTCCAGGCCAGCCAGAGCAA...CTGGCTTTGATCCTTGGCCCTCAAACTAACAAACCAACAAATCCTAGTTAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR CCA 90 bp | TCTGTGCTCCTGTCTGTGAGGAGCTGCTCTCTTATTTTACCATCAGGAACCGACCTAACTAGGATTTGTTaGTTTGTTAGTTTGAGGGCC | + |
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Preference number: 2 (lower is better) Translates to: SVLLSVRSCSLILPSGTDLTRIC*FVSLRA Trigger: GGCCCTCAAACTAACAAACCAACAAATCCTAGTTAG...GTCGGTTCCTGATGGTAAAATAAGAGAGCAGCTCCTCACAGACAGGAGCACAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR TCA 90 bp | CGTGTCTTTTCTCTGACTTCCTTGGTGAAAAGTCCCAGTGTGGTGTTAAGTAGTAGATATGTGAAGGCTTaGGGTCAACCTCAGCTGTTT | + |
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Preference number: 2 (lower is better) Translates to: RVFSLTSLVKSPSVVLSSRYVKA*GQPQLF Trigger: AAACAGCTGAGGTTGACCTCAAGCCTTCACATATCT...ACTACTTAACACCACACTGGGACTTTTCACCAAGGAAGTCAGAGAAAAGACACG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR CCA 90 bp | CGTGTCTTTTCTCTGACTTCCTTGGTGAAAAGTCCCAGTGTGGTGTTAAGTAGTTGTCTCTTAGGAGGTTaGCTAATGGACTGTTTCCCT | + |
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Preference number: 2 (lower is better) Translates to: RVFSLTSLVKSPSVVLSSCLLGG*LMDCFP Trigger: AGGGAAACAGTCCATTAGCCAACCTCCTAAGAGACA...ACTACTTAACACCACACTGGGACTTTTCACCAAGGAAGTCAGAGAAAAGACACG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCTAACTAGGATTTGTTGGTTTGTTAGTTTGAGGGCCAAGGATCAAAGCCAGTTTCGAGACAGGGTCTaGTTATATTGCTCTGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: FLTRICWFVSLRAKDQSQFRDRV*LYCSGW Trigger: CCAGCCAGAGCAATATAATCAGACCCTGTCTCGAAA...CTGGCTTTGATCCTTGGCCCTCAAACTAACAAACCAACAAATCCTAGTTAGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR GCA 90 bp | CTGGAAAAACTCATGAGAGGACAACATTTCTTGGTAAAGCTTTGTCCTCTACTAGAACTCAGGGCTTTGTaGGTATCAGGCAGTGAGCTA | + |
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Preference number: 2 (lower is better) Translates to: LEKLMRGQHFLVKLCPLLELRAL*VSGSEL Trigger: TAGCTCACTGCCTGATACGCACAAAGCCCTGAGTTC...TAGTAGAGGACAAAGCTTTACCAAGAAATGTTGTCCTCTCATGAGTTTTTCCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR CCA 90 bp | AAACTCATGAGAGGACAACATTTCTTGGTAAAGCTTTGTCCTCTACTACGGGAACTGATTATATTGCTCTaGCTGGCCTGGAACTCACTC | + |
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Preference number: 2 (lower is better) Translates to: KLMRGQHFLVKLCPLLRELIILL*LAWNSL Trigger: GAGTGAGTTCCAGGCCAGCCAGAGCAATATAATCAG...TTCCCGTAGTAGAGGACAAAGCTTTACCAAGAAATGTTGTCCTCTCATGAGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR CCA 90 bp | CTGGAAAAACTCATGAGAGGACAACATTTCTTGGTAAAGCTTTGTCCTCTACTATTATATTGCTCTGGCTaGCCTGGAACTCACTCTGTA | + |
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Preference number: 2 (lower is better) Translates to: LEKLMRGQHFLVKLCPLLLYCSG*PGTHSV Trigger: TACAGAGTGAGTTCCAGGCCAGCCAGAGCAATATAA...TAGTAGAGGACAAAGCTTTACCAAGAAATGTTGTCCTCTCATGAGTTTTTCCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR TCA 90 bp | AAACTCATGAGAGGACAACATTTCTTGGTAAAGCTTTGTCCTCTACTACGGGAAGTTTATCCCTCAAAATaGATATATTTCCCTCCAACC | + |
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Preference number: 2 (lower is better) Translates to: KLMRGQHFLVKLCPLLREVYPSK*IYFPPT Trigger: GGTTGGAGGGAAATATATTCATTTTGAGGGATAAAC...TTCCCGTAGTAGAGGACAAAGCTTTACCAAGAAATGTTGTCCTCTCATGAGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR CCA 90 bp | AAACTCATGAGAGGACAACATTTCTTGGTAAAGCTTTGTCCTCTACTACGGGAAGCTCAACCTGGTAGATaGGAAATAAAACAGTTAACT | + |
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Preference number: 2 (lower is better) Translates to: KLMRGQHFLVKLCPLLREAQPGR*EIKQLT Trigger: AGTTAACTGTTTTATTTCCCATCTACCAGGTTGAGC...TTCCCGTAGTAGAGGACAAAGCTTTACCAAGAAATGTTGTCCTCTCATGAGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR TCA 90 bp | CTGGAAAAACTCATGAGAGGACAACATTTCTTGGTAAAGCTTTGTCCTCTACTATGGCAGTCAATGGTTTaGGATGAAAACAAAACACAA | + |
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Preference number: 2 (lower is better) Translates to: LEKLMRGQHFLVKLCPLLWQSMV*DENKTQ Trigger: TTGTGTTTTGTTTTCATCTCAAACCATTGACTGCCA...TAGTAGAGGACAAAGCTTTACCAAGAAATGTTGTCCTCTCATGAGTTTTTCCAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR TCA 90 bp | CTGGAAAAACTCATGAGAGGACAACATTTCTTGGTAAAGCTTTGTCCTCTACTAACCCATTTCTTCTACTaGAGAAATTTCCTTCTTGTC | + |
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Preference number: 2 (lower is better) Translates to: LEKLMRGQHFLVKLCPLLTHFFY*RNFLLV Trigger: GACAAGAAGGAAATTTCTTCAGTAGAAGAAATGGGT...TAGTAGAGGACAAAGCTTTACCAAGAAATGTTGTCCTCTCATGAGTTTTTCCAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR-3UTR GCA 90 bp | TTTCTAACTAGGATTTGTTGGTTTGTTAGTTTGAGGGCCAAGGATCAAAGCCAGTATCACTATCCAAAATaGTTGGAACCAACAGTAATG | + |
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Preference number: 2 (lower is better) Translates to: FLTRICWFVSLRAKDQSQYHYPK*LEPTVM Trigger: CATTACTGTTGGTTCCAAGCATTTTGGATAGTGATA...CTGGCTTTGATCCTTGGCCCTCAAACTAACAAACCAACAAATCCTAGTTAGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR TCA 72 bp | TCAACTCAGGCCTCAGGACGGAGGGGCAAACGCTCCTaGAAGAGCGACTGCCTGGGCTCTGGAGACAGGAGC | + |
|
Preference number: 3 (lower is better) Translates to: STQASGRRGKRS*KSDCLGSGDRS Trigger: GCTCCTGTCTCCAGAGCCCAGGCAGTCGCTCTTTCAGGAGCGTTTGCCCCTCCGTCCTGAGGCCTGAGTTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR GCA 72 bp | GTTAGGCTGGGCTGGCTAACCAACACACCAGCAATCTaGCTCGCTCTGCCTTCCCTGAGCTGGGAACAAGGG | + |
|
Preference number: 3 (lower is better) Translates to: VRLGWLTNTPAI*LALPSLSWEQG Trigger: CCCTTGTTCCCAGCTCAGGGAAGGCAGAGCGAGGCAGATTGCTGGTGTGTTGGTTAGCCAGCCCAGCCTAAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR CCA 72 bp | GACGGAGGGGCAAACGCTCCTGAAAGAGCGACTGCCTaGGCTCTGGAGACAGGAGCAAGCCACACTTACCAA | + |
|
Preference number: 3 (lower is better) Translates to: DGGANAPERATA*ALETGASHTYQ Trigger: TTGGTAAGTGTGGCTTGCTCCTGTCTCCAGAGCCCAGGCAGTCGCTCTTTCAGGAGCGTTTGCCCCTCCGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR GCA 72 bp | CTGACTGCCTTTTCAAGGGTGATGTCGCAGGGGCCTTaGAGTGCCTTCTGTGCTCCTGTCTGTGAGGAGCTG | + |
|
Preference number: 3 (lower is better) Translates to: LTAFSRVMSQGP*SAFCAPVCEEL Trigger: CAGCTCCTCACAGACAGGAGCACAGAAGGCACTGCAAGGCCCCTGCGACATCACCCTTGAAAAGGCAGTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR GCA 72 bp | AGACCAGGCTGGCCTGGAACTCAGAAATGCGCTGACTaGCTTTTCAAGGGTGATGTCGCAGGGGCCTTGCAG | + |
|
Preference number: 3 (lower is better) Translates to: RPGWPGTQKCAD*LFKGDVAGALQ Trigger: CTGCAAGGCCCCTGCGACATCACCCTTGAAAAGGCAGTCAGCGCATTTCTGAGTTCCAGGCCAGCCTGGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR TCA 72 bp | GCAGGGGCCTTGCAGTGCCTTCTGTGCTCCTGTCTGTaGGGAGCTGCTCTCTTATTTTACCATCAGGAACCG | + |
|
Preference number: 3 (lower is better) Translates to: AGALQCLLCSCL*GAALLFYHQEP Trigger: CGGTTCCTGATGGTAAAATAAGAGAGCAGCTCCTCACAGACAGGAGCACAGAAGGCACTGCAAGGCCCCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR CCA 72 bp | GGGCAAACGCTCCTGAAAGAGCGACTGCCTGGGCTCTaGAGACAGGAGCAAGCCACACTTACCAAATATCTC | + |
|
Preference number: 3 (lower is better) Translates to: GQTLLKERLPGL*RQEQATLTKYL Trigger: GAGATATTTGGTAAGTGTGGCTTGCTCCTGTCTCCAGAGCCCAGGCAGTCGCTCTTTCAGGAGCGTTTGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR-3UTR CAA 90 bp | CCAGGCCCCCATCCCACTATTTCAACACTCCCCAGCCCACTGACAGGAATCTGTTCTAGAGAGCGAAGATaGTTTCTTCCCTTGCCCCAG | + |
|
Preference number: 3 (lower is better) Translates to: PGPHPTISTLPSPLTGICSRERR*FLPLPQ Trigger: CTGGGGCAAGGGAAGAAACAATCTTCGCTCTCTAGA...ACAGATTCCTGTCAGTGGGCTGGGGAGTGTTGAAATAGTGGGATGGGGGCCTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR TCA 72 bp | GGAGAGGCTGGTGAGGAGCGAATGGTGCTGTACATCTaGGCTACGTGTTCTTCCTCTTCCTCTGCCACTACT | + |
|
Preference number: 3 (lower is better) Translates to: GEAGEERMVLYI*ATCSSSSSATT Trigger: AGTAGTGGCAGAGGAAGAGGAAGAACACGTAGCTCAGATGTACAGCACCATTCGCTCCTCACCAGCCTCTCC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR TCA 72 bp | GGCTCGTGGGGGACCACCTGTCACCTAGTTCTGCAGTaGCCATGGCTATACTTGCTACTCCTTCTGTTGCAA | + |
|
Preference number: 3 (lower is better) Translates to: GSWGTTCHLVLQ*PWLYLLLLLLQ Trigger: TTGCAACAGAAGGAGTAGCAAGTATAGCCATGGTCACTGCAGAACTAGGTGACAGGTGGTCCCCCACGAGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR GCA 72 bp | GAACTTTGTAGACCAGGCTGGCCTGGAACTCAGAAATaGGCTGACTGCCTTTTCAAGGGTGATGTCGCAGGG | + |
|
Preference number: 3 (lower is better) Translates to: ELCRPGWPGTQK*ADCLFKGDVAG Trigger: CCCTGCGACATCACCCTTGAAAAGGCAGTCAGCGCATTTCTGAGTTCCAGGCCAGCCTGGTCTACAAAGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR-3UTR CAA 90 bp | AATCTGCCTCGCTCTGCCTTCCCTGAGCTGGGAACAAGGGCTCAACCTCAGGACTGCCTGACCCAGACATaGGATTTTGGATTAAGGATG | + |
|
Preference number: 3 (lower is better) Translates to: NLPRSAFPELGTRAQPQDCLTQT*DFGLRM Trigger: CATCCTTAATCCAAAATCCAATGTCTGGGTCAGGCA...GTCCTGAGGTTGAGCCCTTGTTCCCAGCTCAGGGAAGGCAGAGCGAGGCAGATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR GCA 72 bp | AGGATGCGCAGTACACAAACCTCATGTCATTCTCACTaGCTTCAGGAACCGCACAGAAGCTCCCGTCTTCCA | + |
|
Preference number: 3 (lower is better) Translates to: RMRSTQTSCHSH*LQEPHRSSRLP Trigger: TGGAAGACGGGAGCTTCTGTGCGGTTCCTGAAGGCAGTGAGAATGACATGAGGTTTGTGTACTGCGCATCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025354.5 ENSMUST00000235465.2 |
||
| 3UTR-3UTR CAA 90 bp | GTCCTGGAACTTTGTAGACCAGGCTGGCCTGGAACTCAGAAATGCGCTGACTGCAAAAACCCTACACCATaGGCAGCATCTTCCTTCAGT | + |
|
Preference number: 3 (lower is better) Translates to: VLELCRPGWPGTQKCADCKNPTP*AASSFS Trigger: ACTGAAGGAAGATGCTGCCAATGGTGTAGGGTTTTT...GCAGTCAGCGCATTTCTGAGTTCCAGGCCAGCCTGGTCTACAAAGTTCCAGGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR-3UTR CAA 90 bp | AATCTGCCTCGCTCTGCCTTCCCTGAGCTGGGAACAAGGGCTCAACCTCAGGACAGTGAAATTTTCCAATaGTGTCACGCTGTCAGTTTA | + |
|
Preference number: 3 (lower is better) Translates to: NLPRSAFPELGTRAQPQDSEIFQ*CHAVSL Trigger: TAAACTGACAGCGTGACACAATTGGAAAATTTCACT...GTCCTGAGGTTGAGCCCTTGTTCCCAGCTCAGGGAAGGCAGAGCGAGGCAGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR TCA 72 bp | CCGCAGATCCCGAAGTACGCGTGCAAAGCATCTGTCTaGGCCTGGTGTATTTTTCTTAATATGAGGGTCTCC | + |
|
Preference number: 3 (lower is better) Translates to: PQIPKYACKASV*AWCIFLNMRVS Trigger: GGAGACCCTCATATTAAGAAAAATACACCAGGCTCAGACAGATGCTTTGCACGCGTACTTCGGGATCTGCGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000235465.2 |
||
| 3UTR TCA 72 bp | GGTTGCCAGGCTTGTAGAGCAAGAGCCTCCACTAACTaGAACAGCTCATCTGCCCCACCTTATTTTCTAGAC | + |
|
Preference number: 3 (lower is better) Translates to: GCQACRARASTN*NSSSAPPYFLD Trigger: GTCTAGAAAATAAGGTGGGGCAGATGAGCTGTTTCAGTTAGTGGAGGCTCTTGCTCTACAAGCCTGGCAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR GCA 72 bp | CTTGCAGTGCCTTCTGTGCTCCTGTCTGTGAGGAGCTaGTCTCTTATTTTACCATCAGGAACCGACTGCATT | + |
|
Preference number: 3 (lower is better) Translates to: LAVPSVLLSVRS*SLILPSGTDCI Trigger: AATGCAGTCGGTTCCTGATGGTAAAATAAGAGAGCAGCTCCTCACAGACAGGAGCACAGAAGGCACTGCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR CCA 72 bp | CAAAACCAATACCCCAGGGTTAGTCAGGTGGCAATGTaGACATTGTCTGAGCACTGTTTGGAGTCCTTGGTC | + |
|
Preference number: 3 (lower is better) Translates to: QNQYPRVSQVAM*TLSEHCLESLV Trigger: GACCAAGGACTCCAAACAGTGCTCAGACAATGTCCACATTGCCACCTGACTAACCCTGGGGTATTGGTTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025354.5 ENSMUST00000235465.2 ENSMUST00000236368.2 |
||
| 3UTR CCA 72 bp | AAGTTTCCTCCATGCCTCTCCTGTCTCTTAGGAGGTTaGCTAATGGACTGTTTCCCTGAGCATCCTCACCAT | + |
|
Preference number: 3 (lower is better) Translates to: KFPPCLSCLLGG*LMDCFPEHPHH Trigger: ATGGTGAGGATGCTCAGGGAAACAGTCCATTAGCCAACCTCCTAAGAGACAGGAGAGGCATGGAGGAAACTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR-3UTR CAA 90 bp | CCAGGCCCCCATCCCACTATTTCAACACTCCCCAGCCCACTGACAGGAATCTGTGAAGAAATTTCCTTCTaGTCACCAAGTCAAAGATGT | + |
|
Preference number: 3 (lower is better) Translates to: PGPHPTISTLPSPLTGICEEISF*SPSQRC Trigger: ACATCTTTGACTTGGTGACAAGAAGGAAATTTCTTC...ACAGATTCCTGTCAGTGGGCTGGGGAGTGTTGAAATAGTGGGATGGGGGCCTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR GCA 72 bp | ATTGGCCCACTGTCCTTTGACCTAAGAATATTGCAATaGTCCCATCTACAAGGCGTCAGTCAGACTACGGCT | + |
|
Preference number: 3 (lower is better) Translates to: IGPLSFDLRILQ*SHLQGVSQTTA Trigger: AGCCGTAGTCTGACTGACGCCTTGTAGATGGGAGCATTGCAATATTCTTAGGTCAAAGGACAGTGGGCCAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR GCA 72 bp | ACAACCCATTCTCCGTCTCACTTAAAGTTTCCTCCATaGCTCTCCTGTCTCTTAGGAGGTTGGCTAATGGAC | + |
|
Preference number: 3 (lower is better) Translates to: TTHSPSHLKFPP*LSCLLGGWLMD Trigger: GTCCATTAGCCAACCTCCTAAGAGACAGGAGAGGCATGGAGGAAACTTTAAGTGAGACGGAGAATGGGTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR GCA 72 bp | TTAGCCCAATCTGAAACTGTGGAAATGAAGGCCTTATaGCCAGGTCTGCTAAATCCTACTGCTGCCTGCATG | + |
|
Preference number: 3 (lower is better) Translates to: LAQSETVEMKAL*PGLLNPTAACM Trigger: CATGCAGGCAGCAGTAGGATTTAGCAGACCTGGGCATAAGGCCTTCATTTCCACAGTTTCAGATTGGGCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR CCA 72 bp | TTAAAGTTTGGTATTTGTGTGCGTGTGTGTGTGGGGTaGGGGGTAACACATGTCATGGGCATGCATATGGAG | + |
|
Preference number: 3 (lower is better) Translates to: LKFGICVRVCVG*GVTHVMGMHME Trigger: CTCCATATGCATGCCCATGACATGTGTTACCCCCCACCCCACACACACACGCACACAAATACCAAACTTTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR CCA 72 bp | AGTCCTGATCGAGCCAGTCCTGATAGCGTTTACTTTTaGGCAGGGAGGAAGTTGCTGAAAGAGAGAGATTTC | + |
|
Preference number: 3 (lower is better) Translates to: SPDRASPDSVYF*AGRKLLKERDF Trigger: GAAATCTCTCTCTTTCAGCAACTTCCTCCCTGCCCAAAAGTAAACGCTATCAGGACTGGCTCGATCAGGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR-3UTR CAA 90 bp | GTCCTGGAACTTTGTAGACCAGGCTGGCCTGGAACTCAGAAATGCGCTGACTGCAATGTGACATGTTGGTaGCTAACAAAGGTTTTACAC | + |
|
Preference number: 3 (lower is better) Translates to: VLELCRPGWPGTQKCADCNVTCW*LTKVLH Trigger: GTGTAAAACCTTTGTTAGCAACCAACATGTCACATT...GCAGTCAGCGCATTTCTGAGTTCCAGGCCAGCCTGGTCTACAAAGTTCCAGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR-3UTR CAA 90 bp | CGTGTCTTTTCTCTGACTTCCTTGGTGAAAAGTCCCAGTGTGGTGTTAAGTAGTTCAATGGTAAGAAGCTaGCCTCTAGGGAGGAGTTGC | + |
|
Preference number: 3 (lower is better) Translates to: RVFSLTSLVKSPSVVLSSSMVRS*PLGRSC Trigger: GCAACTCCTCCCTAGAGGCAAGCTTCTTACCATTGA...ACTACTTAACACCACACTGGGACTTTTCACCAAGGAAGTCAGAGAAAAGACACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR TCA 72 bp | GTGTCGCCATTATTTTCGGATTGGCCCACTGTCCTTTaGCCTAAGAATATTGCAATGCTCCCATCTACAAGG | + |
|
Preference number: 3 (lower is better) Translates to: VSPLFSDWPTVL*PKNIAMLPSTR Trigger: CCTTGTAGATGGGAGCATTGCAATATTCTTAGGTCAAAGGACAGTGGGCCAATCCGAAAATAATGGCGACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR TCA 72 bp | GAAAGAGAGAGATTTCAGACACCACTTAGCCCAATCTaGAACTGTGGAAATGAAGGCCTTATGCCCAGGTCT | + |
|
Preference number: 3 (lower is better) Translates to: ERERFQTPLSPI*NCGNEGLMPRS Trigger: AGACCTGGGCATAAGGCCTTCATTTCCACAGTTTCAGATTGGGCTAAGTGGTGTCTGAAATCTCTCTCTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR-3UTR CAA 90 bp | TCTGTGCTCCTGTCTGTGAGGAGCTGCTCTCTTATTTTACCATCAGGAACCGACTTTGACCTAAGAATATaGCAATGCTCCCATCTACAA | + |
|
Preference number: 3 (lower is better) Translates to: SVLLSVRSCSLILPSGTDFDLRI*QCSHLQ Trigger: TTGTAGATGGGAGCATTGCAATATTCTTAGGTCAAA...GTCGGTTCCTGATGGTAAAATAAGAGAGCAGCTCCTCACAGACAGGAGCACAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR TCA 72 bp | AAGCATCTGTCTGAGCCTGGTGTATTTTTCTTAATATaGGGGTCTCCAGTTGCCATTTCCTGGATGACTGTC | + |
|
Preference number: 3 (lower is better) Translates to: KHLSEPGVFFLI*GSPVAISWMTV Trigger: GACAGTCATCCAGGAAATGGCAACTGGAGACCCTCATATTAAGAAAAATACACCAGGCTCAGACAGATGCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000235465.2 |
||
| 3UTR TCA 72 bp | TTAACAACTAATGGCAGCTCAGGAAAAGCACTGCCTTaGAACACTCCTATAGCATCTCAACACGCTCCTTCA | + |
|
Preference number: 3 (lower is better) Translates to: LTTNGSSGKALP*NTPIASQHAPS Trigger: TGAAGGAGCGTGTTGAGATGCTATAGGAGTGTTTCAAGGCAGTGCTTTTCCTGAGCTGCCATTAGTTGTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR TCA 72 bp | TCAGGAACCGACTGCATTCTTACATTTGACTTTCCGTaGAGTCACTGTCTTGAAGGAAGGGTTGCTCTAGAA | + |
|
Preference number: 3 (lower is better) Translates to: SGTDCILTFDFP*SHCLEGRVALE Trigger: TTCTAGAGCAACCCTTCCTTCAAGACAGTGACTTCACGGAAAGTCAAATGTAAGAATGCAGTCGGTTCCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR TCA 72 bp | AAGAAGCTTGCCTCTAGGGAGGAGTTGCCATGCCAGTaGATTATAGATCAGCTCCTAATAGGAGTGCTTAAT | + |
|
Preference number: 3 (lower is better) Translates to: KKLASREELPCQ*IIDQLLIGVLN Trigger: ATTAAGCACTCCTATTAGGAGCTGATCTATAATTCACTGGCATGGCAACTCCTCCCTAGAGGCAAGCTTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR GCA 72 bp | AAGAAGCCAAGTAAAATCCAGTGTATTCCACATGGCTaGACTTGTACAGAGCACACGTTGTACACAAACAGG | + |
|
Preference number: 3 (lower is better) Translates to: KKPSKIQCIPHG*TCTEHTLYTNR Trigger: CCTGTTTGTGTACAACGTGTGCTCTGTACAAGTGCAGCCATGTGGAATACACTGGATTTTACTTGGCTTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR-3UTR CAA 90 bp | CTGGAAAAACTCATGAGAGGACAACATTTCTTGGTAAAGCTTTGTCCTCTACTAAGATTGTTTCTTCCCTaGCCCCAGACAAATGGCAGT | + |
|
Preference number: 3 (lower is better) Translates to: LEKLMRGQHFLVKLCPLLRLFLP*PQTNGS Trigger: ACTGCCATTTGTCTGGGGCAAGGGAAGAAACAATCT...TAGTAGAGGACAAAGCTTTACCAAGAAATGTTGTCCTCTCATGAGTTTTTCCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR-3UTR CAA 90 bp | CGTGTCTTTTCTCTGACTTCCTTGGTGAAAAGTCCCAGTGTGGTGTTAAGTAGTACTTCATCTCTTAATTaGTGTGAGATTCCTCTGGCA | + |
|
Preference number: 3 (lower is better) Translates to: RVFSLTSLVKSPSVVLSSTSSLN*CEIPLA Trigger: TGCCAGAGGAATCTCACACAAATTAAGAGATGAAGT...ACTACTTAACACCACACTGGGACTTTTCACCAAGGAAGTCAGAGAAAAGACACG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR GCA 72 bp | GATTTACAGGCTTTTCCTCCCAACAGTTATTTTAGCTaGCTCTTCTTTATGTCTCATGCCTATCCTGTGCAA | + |
|
Preference number: 3 (lower is better) Translates to: DLQAFPPNSYFS*LFFMSHAYPVQ Trigger: TTGCACAGGATAGGCATGAGACATAAAGAAGAGGCAGCTAAAATAACTGTTGGGAGGAAAAGCCTGTAAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR CCA 72 bp | CTACTACGGGAAGACTTATTTCTAACTAGGATTTGTTaGTTTGTTAGTTTGAGGGCCAAGGATCAAAGCCAG | + |
|
Preference number: 3 (lower is better) Translates to: LLREDLFLTRIC*FVSLRAKDQSQ Trigger: CTGGCTTTGATCCTTGGCCCTCAAACTAACAAACCAACAAATCCTAGTTAGAAATAAGTCTTCCCGTAGTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR-3UTR CAA 90 bp | CTGGAAAAACTCATGAGAGGACAACATTTCTTGGTAAAGCTTTGTCCTCTACTATCAACAAGGATTTTCTaGAAGTCCAGTACAGTGGTT | + |
|
Preference number: 3 (lower is better) Translates to: LEKLMRGQHFLVKLCPLLSTRIF*KSSTVV Trigger: AACCACTGTACTGGACTTCAAGAAAATCCTTGTTGA...TAGTAGAGGACAAAGCTTTACCAAGAAATGTTGTCCTCTCATGAGTTTTTCCAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR-3UTR CAA 90 bp | AAACTCATGAGAGGACAACATTTCTTGGTAAAGCTTTGTCCTCTACTACGGGAAACCATCTCCATTTGGTaGTTAGTTCATAGAACTAAG | + |
|
Preference number: 3 (lower is better) Translates to: KLMRGQHFLVKLCPLLRETISIW*LVHRTK Trigger: CTTAGTTCTATGAACTAACAACCAAATGGAGATGGT...TTCCCGTAGTAGAGGACAAAGCTTTACCAAGAAATGTTGTCCTCTCATGAGTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| 3UTR TCA 72 bp | TATCCTTGCACTCCTAACATAAACTCAAATGAGCCATaGTTTTATTCTTTCTTTCAAGTGCGACTGAGCTGT | + |
|
Preference number: 3 (lower is better) Translates to: YPCTPNINSNEP*FYSFFQVRLSC Trigger: ACAGCTCAGTCGCACTTGAAAGAAAGAATAAAATCATGGCTCATTTGAGTTTATGTTAGGAGTGCAAGGATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| CDS-3UTR TCA 90 bp | CCCAGGGTTAGTCAGGTGGCAATGTGGACATTGTCTGAGCACTGTTTGGAGTCCACAGCGACTCAGATTTaGCCCTGCTGGTCTCCAGCG | + |
|
Preference number: 4 (lower is better) Translates to: PRVSQVAMWTLSEHCLESTATQI*PCWSPA Trigger: CGCTGGAGACCAGCAGGGTCAAATCTGAGTCGCTGT...GGACTCCAAACAGTGCTCAGACAATGTCCACATTGCCACCTGACTAACCCTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025354.5 |
||
| CDS-3UTR TCA 90 bp | CCAGGCCCCCATCCCACTATTTCAACACTCCCCAGCCCACTGACAGGAATCTGTAGTCATCTCCAAGGATaGTCAGACAGGAAAGCCCCG | + |
|
Preference number: 4 (lower is better) Translates to: PGPHPTISTLPSPLTGICSHLQG*SDRKAP Trigger: CGGGGCTTTCCTGTCTGATCATCCTTGGAGATGACT...ACAGATTCCTGTCAGTGGGCTGGGGAGTGTTGAAATAGTGGGATGGGGGCCTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| CDS-3UTR CCA 90 bp | TCGACGGGCTTGTTAGGCCTCCCGTGGTACCCGTTCTGCTGCCTCATTATGCACCAATTGTCAACCTGCTaGTCTCCAGCGAGGAATACC | + |
|
Preference number: 4 (lower is better) Translates to: STGLLGLPWYPFCCLIMHQLSTC*SPARNT Trigger: GGTATTCCTCGCTGGAGACCAGCAGGTTGACAATTG...GTGCATAATGAGGCAGCAGAACGGGTACCACGGGAGGCCTAACAAGCCCGTCGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235465.2 |
||
| 3UTR CAA 72 bp | CTTTCGCCTACATCCCCCACACATCTGTTCTTTCACTaGTGTTCTGAGGCTCGTGGGGGACCACCTGTCACC | + |
|
Preference number: 4 (lower is better) Translates to: LSPTSPTHLFFH*CSEARGGPPVT Trigger: GGTGACAGGTGGTCCCCCACGAGCCTCAGAACACAAGTGAAAGAACAGATGTGTGGGGGATGTAGGCGAAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| CDS-3UTR GCA 90 bp | CCAGGCCCCCATCCCACTATTTCAACACTCCCCAGCCCACTGACAGGAATCTGTTCATGTCATTCTCACTaGCTTCAGGAACCGCACAGA | + |
|
Preference number: 4 (lower is better) Translates to: PGPHPTISTLPSPLTGICSCHSH*LQEPHR Trigger: TCTGTGCGGTTCCTGAAGGCAGTGAGAATGACATGA...ACAGATTCCTGTCAGTGGGCTGGGGAGTGTTGAAATAGTGGGATGGGGGCCTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
||
| CDS-3UTR TCA 90 bp | GGTGTCGACGGGCTTGTTAGGCCTCCCGTGGTACCCGTTCTGCTGCCTCATTATTGCTCCTGGATTCTTTaGTGGATTGAATGGAATACC | + |
|
Preference number: 4 (lower is better) Translates to: GVDGLVRPPVVPVLLPHYCSWIL*WIEWNT Trigger: GGTATTCCATTCAATCCATCAAAGAATCCAGGAGCA...ATAATGAGGCAGCAGAACGGGTACCACGGGAGGCCTAACAAGCCCGTCGACACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025354.5 ENSMUST00000235465.2 |
||
| CDS-3UTR TCA 90 bp | ACCAATACCCCAGGGTTAGTCAGGTGGCAATGTGGACATTGTCTGAGCACTGTTCGTGCAAAGCATCTGTaGCCATGTTTGTGGGGCACT | + |
|
Preference number: 4 (lower is better) Translates to: TNTPGLVRWQCGHCLSTVRAKHL*PCLWGT Trigger: AGTGCCCCACAAACATGGTCACAGATGCTTTGCACG...AACAGTGCTCAGACAATGTCCACATTGCCACCTGACTAACCCTGGGGTATTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236368.2 |
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| CDS-3UTR TCA 90 bp | GTCCTGGAACTTTGTAGACCAGGCTGGCCTGGAACTCAGAAATGCGCTGACTGCAATGTGGACATTGTCTaGGCACTGTTTGGAGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: VLELCRPGWPGTQKCADCNVDIV*ALFGVL Trigger: AAGGACTCCAAACAGTGCTCAGACAATGTCCACATT...GCAGTCAGCGCATTTCTGAGTTCCAGGCCAGCCTGGTCTACAAAGTTCCAGGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| CDS-3UTR CCA 90 bp | TACAAAACCAATACCCCAGGGTTAGTCAGGTGGCAATGTGGACATTGTCTGAGCCCTCACTGTCTTCTGTaGGAAGAACCTGCAGGGAGT | + |
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Preference number: 4 (lower is better) Translates to: YKTNTPGLVRWQCGHCLSPHCLL*EEPAGS Trigger: ACTCCCTGCAGGTTCTTCCCACAGAAGACAGTGAGG...GCTCAGACAATGTCCACATTGCCACCTGACTAACCCTGGGGTATTGGTTTTGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235465.2 |
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| CDS-3UTR TCA 90 bp | CCCAGGGTTAGTCAGGTGGCAATGTGGACATTGTCTGAGCACTGTTTGGAGTCCTGCTCCTGGATTCTTTaGTGGATTGAATGGAATACC | + |
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Preference number: 4 (lower is better) Translates to: PRVSQVAMWTLSEHCLESCSWIL*WIEWNT Trigger: GGTATTCCATTCAATCCATCAAAGAATCCAGGAGCA...GGACTCCAAACAGTGCTCAGACAATGTCCACATTGCCACCTGACTAACCCTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025354.5 ENSMUST00000235465.2 |
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| CDS-3UTR TCA 90 bp | TACAAAACCAATACCCCAGGGTTAGTCAGGTGGCAATGTGGACATTGTCTGAGCACAGCGACTCAGATTTaGCCTCACTGTCTTCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: YKTNTPGLVRWQCGHCLSTATQI*PHCLLW Trigger: CCACAGAAGACAGTGAGGTCAAATCTGAGTCGCTGT...GCTCAGACAATGTCCACATTGCCACCTGACTAACCCTGGGGTATTGGTTTTGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235465.2 |
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| CDS-3UTR CCA 90 bp | TACAAAACCAATACCCCAGGGTTAGTCAGGTGGCAATGTGGACATTGTCTGAGCAGCTGGATGACTGTCTaGCCATTTAGCAAATCCCCC | + |
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Preference number: 4 (lower is better) Translates to: YKTNTPGLVRWQCGHCLSSWMTV*PFSKSP Trigger: GGGGGATTTGCTAAATGGCCAGACAGTCATCCAGCT...GCTCAGACAATGTCCACATTGCCACCTGACTAACCCTGGGGTATTGGTTTTGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236368.2 |
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| CDS-3UTR CCA 90 bp | TCTGTGCTCCTGTCTGTGAGGAGCTGCTCTCTTATTTTACCATCAGGAACCGACATCTGGATGACTGTCTaGCCATTTAGCAAATCCCCC | + |
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Preference number: 4 (lower is better) Translates to: SVLLSVRSCSLILPSGTDIWMTV*PFSKSP Trigger: GGGGGATTTGCTAAATGGCCAGACAGTCATCCAGAT...GTCGGTTCCTGATGGTAAAATAAGAGAGCAGCTCCTCACAGACAGGAGCACAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR CAA 72 bp | CAGTTAAGCATAGCCTGGCTCTGTCAGAAAGGCTCTTaGGTTTCAATGGTAAGAAGCTTGCCTCTAGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: QLSIAWLCQKGS*VSMVRSLPLGR Trigger: CCTCCCTAGAGGCAAGCTTCTTACCATTGAAACCAAAGAGCCTTTCTGACAGAGCCAGGCTATGCTTAACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| CDS-3UTR GCA 90 bp | TTTCTAACTAGGATTTGTTGGTTTGTTAGTTTGAGGGCCAAGGATCAAAGCCAGATGAGACTCAAGGCCTaGTCCCTGGGCCAGCCCATT | + |
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Preference number: 4 (lower is better) Translates to: FLTRICWFVSLRAKDQSQMRLKA*SLGQPI Trigger: AATGGGCTGGCCCAGGGAGCAGGCCTTGAGTCTCAT...CTGGCTTTGATCCTTGGCCCTCAAACTAACAAACCAACAAATCCTAGTTAGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| CDS-3UTR TCA 90 bp | TCTGTGCTCCTGTCTGTGAGGAGCTGCTCTCTTATTTTACCATCAGGAACCGACTGCTCCTGGATTCTTTaGTGGATTGAATGGAATACC | + |
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Preference number: 4 (lower is better) Translates to: SVLLSVRSCSLILPSGTDCSWIL*WIEWNT Trigger: GGTATTCCATTCAATCCATCAAAGAATCCAGGAGCA...GTCGGTTCCTGATGGTAAAATAAGAGAGCAGCTCCTCACAGACAGGAGCACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR CAA 72 bp | AGTCCTGATAGCGTTTACTTTTGGGCAGGGAGGAAGTaGCTGAAAGAGAGAGATTTCAGACACCACTTAGCC | + |
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Preference number: 4 (lower is better) Translates to: SPDSVYFWAGRK*LKERDFRHHLA Trigger: GGCTAAGTGGTGTCTGAAATCTCTCTCTTTCAGCAACTTCCTCCCTGCCCAAAAGTAAACGCTATCAGGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR CAA 72 bp | GAGCCCTTCCTGATTCGTGTCTTTTCTCTGACTTCCTaGGTGAAAAGTCCCAGTGTGGTGTTAAGTAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: EPFLIRVFSLTS*VKSPSVVLSSR Trigger: TCTACTACTTAACACCACACTGGGACTTTTCACCAAGGAAGTCAGAGAAAAGACACGAATCAGGAAGGGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| CDS-3UTR CCA 90 bp | AAACTCATGAGAGGACAACATTTCTTGGTAAAGCTTTGTCCTCTACTACGGGAACAATTGTCAACCTGCTaGTCTCCAGCGAGGAATACC | + |
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Preference number: 4 (lower is better) Translates to: KLMRGQHFLVKLCPLLREQLSTC*SPARNT Trigger: GGTATTCCTCGCTGGAGACCAGCAGGTTGACAATTG...TTCCCGTAGTAGAGGACAAAGCTTTACCAAGAAATGTTGTCCTCTCATGAGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| CDS-3UTR CCA 90 bp | AAACTCATGAGAGGACAACATTTCTTGGTAAAGCTTTGTCCTCTACTACGGGAACGCGTGCAAAGCATCTaGATGACTGTCTGGCCATTT | + |
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Preference number: 4 (lower is better) Translates to: KLMRGQHFLVKLCPLLRERVQSI*MTVWPF Trigger: AAATGGCCAGACAGTCATCCAGATGCTTTGCACGCG...TTCCCGTAGTAGAGGACAAAGCTTTACCAAGAAATGTTGTCCTCTCATGAGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR CAA 72 bp | ATGTCTTTCTCTAGAGAGCGAAGATTGTTTCTTCCCTaGCCCCAGACAAATGGCAGTCAATGGTTTGAGATG | + |
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Preference number: 4 (lower is better) Translates to: MSFSRERRLFLP*PQTNGSQWFEM Trigger: CATCTCAAACCATTGACTGCCATTTGTCTGGGGCAAGGGAAGAAACAATCTTCGCTCTCTAGAGAAAGACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025354.5 ENSMUST00000236216.2 |
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| 3UTR CAA 72 bp | GACTTATTTCTAACTAGGATTTGTTGGTTTGTTAGTTaGAGGGCCAAGGATCAAAGCCAGGGAACTCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: DLFLTRICWFVS*RAKDQSQGTQG Trigger: GCCCTGAGTTCCCTGGCTTTGATCCTTGGCCCTCAAACTAACAAACCAACAAATCCTAGTTAGAAATAAGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR CAA 72 bp | ACCCCTTCTCTAGCTTCTGAAATTATTAAAGCAACATaGAGAGTCCTCAGTCCCCCAAGCCTGTACAATGGT | + |
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Preference number: 4 (lower is better) Translates to: TPSLASEIIKAT*RVLSPPSLYNG Trigger: ACCATTGTACAGGCTTGGGGGACTGAGGACTCTCAATGTTGCTTTAATAATTTCAGAAGCTAGAGAAGGGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| CDS-3UTR GCA 90 bp | CTGGAAAAACTCATGAGAGGACAACATTTCTTGGTAAAGCTTTGTCCTCTACTAATAGCAAATGCAGGATaGGCAGTACACAAACCTCAT | + |
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Preference number: 4 (lower is better) Translates to: LEKLMRGQHFLVKLCPLLIANAG*AVHKPH Trigger: ATGAGGTTTGTGTACTGCGCATCCTGCATTTGCTAT...TAGTAGAGGACAAAGCTTTACCAAGAAATGTTGTCCTCTCATGAGTTTTTCCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| 3UTR CAA 72 bp | GTCACTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTaGAGACAAAAATTTCTGTGTGTAGCCCTGGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: VTFCCCCCCCCC*RQKFLCVALAV Trigger: GACAGCCAGGGCTACACACAGAAATTTTTGTCTCAAACAACAACAACAACAACAACAACAACAAAAAGTGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| CDS-3UTR CAA 90 bp | ACCAATACCCCAGGGTTAGTCAGGTGGCAATGTGGACATTGTCTGAGCACTGTTCACAGCGACTCAGATTaGACCCTGCTGGTCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: TNTPGLVRWQCGHCLSTVHSDSD*TLLVSS Trigger: GCTGGAGACCAGCAGGGTCAAATCTGAGTCGCTGTG...AACAGTGCTCAGACAATGTCCACATTGCCACCTGACTAACCCTGGGGTATTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025354.5 |
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| CDS-3UTR CAA 90 bp | TCTGTGCTCCTGTCTGTGAGGAGCTGCTCTCTTATTTTACCATCAGGAACCGACCTTGGTCTTCCAGCTTaGATGGAGATCACGGAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: SVLLSVRSCSLILPSGTDLGLPA*MEITEA Trigger: CGCCTCCGTGATCTCCATCAAAGCTGGAAGACCAAG...GTCGGTTCCTGATGGTAAAATAAGAGAGCAGCTCCTCACAGACAGGAGCACAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| CDS TCA 90 bp | CTAAGCAAGCCTCTTTATCCACACGGCCTAAGTCATCTCCAAGGATaGTCAGACAGGAAAGCCCCGTGTACGTCATCGCTATGTGTCCAC | + |
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Preference number: 5 (lower is better) Translates to: LSKPLYPHGLSHLQG*SDRKAPCTSSLCVH Trigger: GTGGACACATAGCGATGACGTACACGGGGCTTTCCTGTCTGATCATCCTTGGAGATGACTTAGGCCGTGTGGATAAAGAGGCTTGCTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000236216.2 ENSMUST00000236999.2 |
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| CDS-3UTR CAA 90 bp | ACCAATACCCCAGGGTTAGTCAGGTGGCAATGTGGACATTGTCTGAGCACTGTTCACAGCGACTCAGATTaGACCTCACTGTCTTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: TNTPGLVRWQCGHCLSTVHSDSD*TSLSSV Trigger: CACAGAAGACAGTGAGGTCAAATCTGAGTCGCTGTG...AACAGTGCTCAGACAATGTCCACATTGCCACCTGACTAACCCTGGGGTATTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235465.2 |
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| CDS-3UTR CAA 90 bp | ACCAATACCCCAGGGTTAGTCAGGTGGCAATGTGGACATTGTCTGAGCACTGTTTCTATTATATCGTCTTaGTTCACCACATCCAAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: TNTPGLVRWQCGHCLSTVSIISS*FTTSKE Trigger: CTCCTTGGATGTGGTGAACAAAGACGATATAATAGA...AACAGTGCTCAGACAATGTCCACATTGCCACCTGACTAACCCTGGGGTATTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235465.2 |
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| CDS-3UTR CAA 90 bp | TTTCTAACTAGGATTTGTTGGTTTGTTAGTTTGAGGGCCAAGGATCAAAGCCAGTCTATTATATCGTCTTaGTTCACCACATCCAAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: FLTRICWFVSLRAKDQSQSIISS*FTTSKE Trigger: CTCCTTGGATGTGGTGAACAAAGACGATATAATAGA...CTGGCTTTGATCCTTGGCCCTCAAACTAACAAACCAACAAATCCTAGTTAGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236216.2 |
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| CDS TCA 72 bp | GGCCGCAGATCCCGAAGTACGCGTGCAAAGCATCTGTaGCCATGTTTGTGGGGCACTGTCTTGATTCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: GRRSRSTRAKHL*PCLWGTVLIPA Trigger: AGCAGGAATCAAGACAGTGCCCCACAAACATGGTCACAGATGCTTTGCACGCGTACTTCGGGATCTGCGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236368.2 |
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| CDS TCA 72 bp | CCTCTTTATCCACACGGCCTAAGTCATCTCCAAGGATaGTCAGACAGGAAAGCCCCGTGTACGTCATCGCTA | + |
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Preference number: 6 (lower is better) Translates to: PLYPHGLSHLQG*SDRKAPCTSSL Trigger: TAGCGATGACGTACACGGGGCTTTCCTGTCTGATCATCCTTGGAGATGACTTAGGCCGTGTGGATAAAGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000236216.2 ENSMUST00000236999.2 |
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| CDS CCA 72 bp | CTGGTTAGTAACATCACTAGGCAGGTGATCCTGAGCTaGATGACTGTCTGGCCATTTAGCAAATCCCCCAAC | + |
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Preference number: 6 (lower is better) Translates to: LVSNITRQVILS*MTVWPFSKSPN Trigger: GTTGGGGGATTTGCTAAATGGCCAGACAGTCATCCAGCTCAGGATCACCTGCCTAGTGATGTTACTAACCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236368.2 |
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