Pregenerated sensors for PGF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004791Ensembl transcript IDs: ENSMUST00000004913.7, ENSMUST00000223220.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCCTGTCCCATCTCCAGGATACAGTAGACTGGGTCCCCTCTACATaGCTTCAATGCAGCCGGGGCCAGAGCTGCTCTCTGGGTGGAGCT | + |
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Preference number: 1 (lower is better) Translates to: VLSHLQDTVDWVPST*LQCSRGQSCSLGGA Trigger: AGCTCCACCCAGAGAGCAGCTCTGGCCCCGGCTGCATTGAAGGCATGTAGAGGGGACCCAGTCTACTGTATCCTGGAGATGGGACAGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR GCA 90 bp | CATCTCCAGGATACAGTAGACTGGGTCCCCTCTACATGCCTTCAATaGAGCCGGGGCCAGAGCTGCTCTCTGGGTGGAGCTGGGAATCAG | + |
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Preference number: 1 (lower is better) Translates to: HLQDTVDWVPSTCLQ*SRGQSCSLGGAGNQ Trigger: CTGATTCCCAGCTCCACCCAGAGAGCAGCTCTGGCCCCGGCTGCATTGAAGGCATGTAGAGGGGACCCAGTCTACTGTATCCTGGAGATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR CCA 90 bp | TCCCCTCTACATGCCTTCAATGCAGCCGGGGCCAGAGCTGCTCTCTGGGTGGAGTCTTCTCCAGTTCCCTaGAGAGCCAGGGCCTCTGGG | + |
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Preference number: 2 (lower is better) Translates to: SPLHAFNAAGARAALWVESSPVP*RARASG Trigger: CCCAGAGGCCCTGGCTCTCCAGGGAACTGGAGAAGA...CTCCACCCAGAGAGCAGCTCTGGCCCCGGCTGCATTGAAGGCATGTAGAGGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR CCA 90 bp | ACTTCTAGGCTGAAGGGCAAACTCCACAGGCAAGCTCTGCTCTCCAGAGCCGAAGAGAGCCAGGGCCTCTaGGGTGCGGCTTGCCCCTTG | + |
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Preference number: 2 (lower is better) Translates to: TSRLKGKLHRQALLSRAEESQGL*GAACPL Trigger: CAAGGGGCAAGCCGCACCCCAGAGGCCCTGGCTCTC...TTCGGCTCTGGAGAGCAGAGCTTGCCTGTGGAGTTTGCCCTTCAGCCTAGAAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR TCA 90 bp | TGGAGAGCCAGGGCCTCTGGGGTGCGGCTTGCCCCTTGTAAGGCCATGTCCATGACGGTAATAAATACGTaGGCTGGGTGTGGGGCTCTC | + |
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Preference number: 2 (lower is better) Translates to: WRARASGVRLAPCKAMSMTVINT*AGCGAL Trigger: GAGAGCCCCACACCCAGCTCACGTATTTATTACCGT...CATGGACATGGCCTTACAAGGGGCAAGCCGCACCCCAGAGGCCCTGGCTCTCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR TCA 90 bp | GACTGGGTCCCCTCTACATGCCTTCAATGCAGCCGGGGCCAGAGCTGCTCTCTGCAGCAGGGAGGGTTCTaGGAGGGTGACGGTAATAAA | + |
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Preference number: 2 (lower is better) Translates to: DWVPSTCLQCSRGQSCSLQQGGF*EGDGNK Trigger: TTTATTACCGTCACCCTCTCAGAACCCTCCCTGCTG...CAGAGAGCAGCTCTGGCCCCGGCTGCATTGAAGGCATGTAGAGGGGACCCAGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR GCA 90 bp | CTACATGCCTTCAATGCAGCCGGGGCCAGAGCTGCTCTCTGGGTGGAGCTGGGAGCCATGTCCATGTCTTaGTTCTTCCCAAGCCGAAGC | + |
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Preference number: 2 (lower is better) Translates to: LHAFNAAGARAALWVELGAMSMS*FFPSRS Trigger: GCTTCGGCTTGGGAAGAAGCAAGACATGGACATGGC...TCCCAGCTCCACCCAGAGAGCAGCTCTGGCCCCGGCTGCATTGAAGGCATGTAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR CCA 90 bp | AGGCTGAAGGGCAAACTCCACAGGCAAGCTCTGCTCTCCAGAGCCGAATGTCCTGAGCTGCTCTCTGGGTaGAGCTGGGAATCAGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: RLKGKLHRQALLSRAECPELLSG*SWESGQ Trigger: CTGCCCTGATTCCCAGCTCCACCCAGAGAGCAGCTC...AGGACATTCGGCTCTGGAGAGCAGAGCTTGCCTGTGGAGTTTGCCCTTCAGCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGCAAGCTCTGCTCTCCAGAGCCGAATGTCCTGTCCCATCTCCAGGATACAGGCCAGAGCTGCTCTCTaGGTGGAGCTGGGAATCAGG | + |
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Preference number: 2 (lower is better) Translates to: QASSALQSRMSCPISRIQARAAL*VELGIR Trigger: CCTGATTCCCAGCTCCACCCAGAGAGCAGCTCTGGC...CTGTATCCTGGAGATGGGACAGGACATTCGGCTCTGGAGAGCAGAGCTTGCCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR TCA 90 bp | CTACATGCCTTCAATGCAGCCGGGGCCAGAGCTGCTCTCTGGGTGGAGCTGGGAAAGGCACTGAATTCCTaGGCGTCTTGTCCTTCCATG | + |
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Preference number: 2 (lower is better) Translates to: LHAFNAAGARAALWVELGKALNS*ASCPSM Trigger: CATGGAAGGACAAGACGCTCAGGAATTCAGTGCCTT...TCCCAGCTCCACCCAGAGAGCAGCTCTGGCCCCGGCTGCATTGAAGGCATGTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR GCA 90 bp | CTTTATTCAAGAGAATCTGGCTTGGCAGTTAGTCCCGGCAGAGACAACCGGTGGCCAGGGCCTCTGGGGTaGGGCTTGCCCCTTGTAAGG | + |
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Preference number: 2 (lower is better) Translates to: LYSRESGLAVSPGRDNRWPGPLG*GLPLVR Trigger: CCTTACAAGGGGCAAGCCGCACCCCAGAGGCCCTGG...CCACCGGTTGTCTCTGCCGGGACTAACTGCCAAGCCAGATTCTCTTGAATAAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR CCA 90 bp | TCTAGGCTGAAGGGCAAACTCCACAGGCAAGCTCTGCTCTCCAGAGCCGAATGTGAGCTGCTCTCTGGGTaGAGCTGGGAATCAGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: SRLKGKLHRQALLSRAECELLSG*SWESGQ Trigger: CTGCCCTGATTCCCAGCTCCACCCAGAGAGCAGCTC...ACATTCGGCTCTGGAGAGCAGAGCTTGCCTGTGGAGTTTGCCCTTCAGCCTAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR GCA 90 bp | TTTATTCAAGAGAATCTGGCTTGGCAGTTAGTCCCGGCAGAGACAACCGGTGGGAGCCCCAGGCCACTCTaGCTGTGTTCCAGAGAGGGG | + |
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Preference number: 2 (lower is better) Translates to: FIQENLAWQLVPAETTGGSPRPL*LCSREG Trigger: CCCCTCTCTGGAACACAGGCAGAGTGGCCTGGGGCT...CCCACCGGTTGTCTCTGCCGGGACTAACTGCCAAGCCAGATTCTCTTGAATAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR CCA 90 bp | AGGCTGAAGGGCAAACTCCACAGGCAAGCTCTGCTCTCCAGAGCCGAATGTCCTGCTCCCACAGATCCGTaGCTGGCTTCTTTCTTTCTC | + |
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Preference number: 2 (lower is better) Translates to: RLKGKLHRQALLSRAECPAPTDP*LASFFL Trigger: GAGAAAGAAAGAAGCCAGCCACGGATCTGTGGGAGC...AGGACATTCGGCTCTGGAGAGCAGAGCTTGCCTGTGGAGTTTGCCCTTCAGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR CCA 90 bp | TTTATTCAAGAGAATCTGGCTTGGCAGTTAGTCCCGGCAGAGACAACCGGTGGGTCTTCTCCAGTTCCCTaGAGAGCCAGGGCCTCTGGG | + |
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Preference number: 2 (lower is better) Translates to: FIQENLAWQLVPAETTGGSSPVP*RARASG Trigger: CCCAGAGGCCCTGGCTCTCCAGGGAACTGGAGAAGA...CCCACCGGTTGTCTCTGCCGGGACTAACTGCCAAGCCAGATTCTCTTGAATAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR CCA 90 bp | TTTATTCAAGAGAATCTGGCTTGGCAGTTAGTCCCGGCAGAGACAACCGGTGGGGCCAGAGCTGCTCTCTaGGTGGAGCTGGGAATCAGG | + |
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Preference number: 2 (lower is better) Translates to: FIQENLAWQLVPAETTGGARAAL*VELGIR Trigger: CCTGATTCCCAGCTCCACCCAGAGAGCAGCTCTGGC...CCCACCGGTTGTCTCTGCCGGGACTAACTGCCAAGCCAGATTCTCTTGAATAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR TCA 90 bp | GCCGAATGTCCTGTCCCATCTCCAGGATACAGTAGACTGGGTCCCCTCTACATGCAGCAGGGAGGGTTCTaGGAGGGTGACGGTAATAAA | + |
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Preference number: 2 (lower is better) Translates to: AECPVPSPGYSRLGPLYMQQGGF*EGDGNK Trigger: TTTATTACCGTCACCCTCTCAGAACCCTCCCTGCTG...CATGTAGAGGGGACCCAGTCTACTGTATCCTGGAGATGGGACAGGACATTCGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR CCA 90 bp | TCTAGGCTGAAGGGCAAACTCCACAGGCAAGCTCTGCTCTCCAGAGCCGAATGTGCTCCCACAGATCCGTaGCTGGCTTCTTTCTTTCTC | + |
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Preference number: 2 (lower is better) Translates to: SRLKGKLHRQALLSRAECAPTDP*LASFFL Trigger: GAGAAAGAAAGAAGCCAGCCACGGATCTGTGGGAGC...ACATTCGGCTCTGGAGAGCAGAGCTTGCCTGTGGAGTTTGCCCTTCAGCCTAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR TCA 90 bp | AAGCCGAAGCTCCCACAGATCCGTGGCTGGCTTCTTTCTTTCTCTCTCGTTCTGACGGTAATAAATACGTaGGCTGGGTGTGGGGCTCTC | + |
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Preference number: 2 (lower is better) Translates to: KPKLPQIRGWLLSFSLVLTVINT*AGCGAL Trigger: GAGAGCCCCACACCCAGCTCACGTATTTATTACCGT...CAGAACGAGAGAGAAAGAAAGAAGCCAGCCACGGATCTGTGGGAGCTTCGGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR GCA 90 bp | TGGTTCCAGACTAGAATGCTTTATTCAAGAGAATCTGGCTTGGCAGTTAGTCCCCCAGGGCCTCTGGGGTaGGGCTTGCCCCTTGTAAGG | + |
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Preference number: 2 (lower is better) Translates to: WFQTRMLYSRESGLAVSPPGPLG*GLPLVR Trigger: CCTTACAAGGGGCAAGCCGCACCCCAGAGGCCCTGG...GGGACTAACTGCCAAGCCAGATTCTCTTGAATAAAGCATTCTAGTCTGGAACCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000223220.2 |
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| 3UTR-3UTR CCA 90 bp | GCCGAATGTCCTGTCCCATCTCCAGGATACAGTAGACTGGGTCCCCTCTACATGCCACAGATCCGTGGCTaGCTTCTTTCTTTCTCTCTC | + |
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Preference number: 2 (lower is better) Translates to: AECPVPSPGYSRLGPLYMPQIRG*LLSFSL Trigger: GAGAGAGAAAGAAAGAAGCCAGCCACGGATCTGTGG...CATGTAGAGGGGACCCAGTCTACTGTATCCTGGAGATGGGACAGGACATTCGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR CCA 90 bp | TTTATTCAAGAGAATCTGGCTTGGCAGTTAGTCCCGGCAGAGACAACCGGTGGGCCACAGATCCGTGGCTaGCTTCTTTCTTTCTCTCTC | + |
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Preference number: 2 (lower is better) Translates to: FIQENLAWQLVPAETTGGPQIRG*LLSFSL Trigger: GAGAGAGAAAGAAAGAAGCCAGCCACGGATCTGTGG...CCCACCGGTTGTCTCTGCCGGGACTAACTGCCAAGCCAGATTCTCTTGAATAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR CCA 90 bp | CTTTATTCAAGAGAATCTGGCTTGGCAGTTAGTCCCGGCAGAGACAACCGGTGGCAGGATACAGTAGACTaGGTCCCCTCTACATGCCTT | + |
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Preference number: 2 (lower is better) Translates to: LYSRESGLAVSPGRDNRWQDTVD*VPSTCL Trigger: AAGGCATGTAGAGGGGACCCAGTCTACTGTATCCTG...CCACCGGTTGTCTCTGCCGGGACTAACTGCCAAGCCAGATTCTCTTGAATAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR GCA 72 bp | CCCTCTACATGCCTTCAATGCAGCCGGGGCCAGAGCTaGTCTCTGGGTGGAGCTGGGAATCAGGGCAGGTTC | + |
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Preference number: 3 (lower is better) Translates to: PSTCLQCSRGQS*SLGGAGNQGRF Trigger: GAACCTGCCCTGATTCCCAGCTCCACCCAGAGAGCAGCTCTGGCCCCGGCTGCATTGAAGGCATGTAGAGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR GCA 72 bp | GATACAGTAGACTGGGTCCCCTCTACATGCCTTCAATaGAGCCGGGGCCAGAGCTGCTCTCTGGGTGGAGCT | + |
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Preference number: 3 (lower is better) Translates to: DTVDWVPSTCLQ*SRGQSCSLGGA Trigger: AGCTCCACCCAGAGAGCAGCTCTGGCCCCGGCTGCATTGAAGGCATGTAGAGGGGACCCAGTCTACTGTATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR GCA 72 bp | GTGCGGCTTGCCCCTTGTAAGGCCATGTCCATGTCTTaGTTCTTCCCAAGCCGAAGCTCCCACAGATCCGTG | + |
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Preference number: 3 (lower is better) Translates to: VRLAPCKAMSMS*FFPSRSSHRSV Trigger: CACGGATCTGTGGGAGCTTCGGCTTGGGAAGAAGCAAGACATGGACATGGCCTTACAAGGGGCAAGCCGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR GCA 72 bp | CATCTCCAGGATACAGTAGACTGGGTCCCCTCTACATaGCTTCAATGCAGCCGGGGCCAGAGCTGCTCTCTG | + |
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Preference number: 3 (lower is better) Translates to: HLQDTVDWVPST*LQCSRGQSCSL Trigger: CAGAGAGCAGCTCTGGCCCCGGCTGCATTGAAGGCATGTAGAGGGGACCCAGTCTACTGTATCCTGGAGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR CCA 72 bp | ATTCCTGAGCGTCTTGTCCTTCCATGCCCCTTATCTTaGAGGGGGCACGTCATTCAGCAGGGACGAGTCGGC | + |
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Preference number: 3 (lower is better) Translates to: IPERLVLPCPLS*RGHVIQQGRVG Trigger: GCCGACTCGTCCCTGCTGAATGACGTGCCCCCTCCAAGATAAGGGGCATGGAAGGACAAGACGCTCAGGAAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR CCA 72 bp | CCGAATGTCCTGTCCCATCTCCAGGATACAGTAGACTaGGTCCCCTCTACATGCCTTCAATGCAGCCGGGGC | + |
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Preference number: 3 (lower is better) Translates to: PNVLSHLQDTVD*VPSTCLQCSRG Trigger: GCCCCGGCTGCATTGAAGGCATGTAGAGGGGACCCAGTCTACTGTATCCTGGAGATGGGACAGGACATTCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR CAA 90 bp | GCCGAATGTCCTGTCCCATCTCCAGGATACAGTAGACTGGGTCCCCTCTACATGGGCCATGTCCATGTCTaGCTTCTTCCCAAGCCGAAG | + |
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Preference number: 3 (lower is better) Translates to: AECPVPSPGYSRLGPLYMGHVHV*LLPKPK Trigger: CTTCGGCTTGGGAAGAAGCAAGACATGGACATGGCC...CATGTAGAGGGGACCCAGTCTACTGTATCCTGGAGATGGGACAGGACATTCGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR CAA 90 bp | GCCGAATGTCCTGTCCCATCTCCAGGATACAGTAGACTGGGTCCCCTCTACATGGAATTCCTGAGCGTCTaGTCCTTCCATGCCCCTTAT | + |
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Preference number: 3 (lower is better) Translates to: AECPVPSPGYSRLGPLYMEFLSV*SFHAPY Trigger: ATAAGGGGCATGGAAGGACAAGACGCTCAGGAATTC...CATGTAGAGGGGACCCAGTCTACTGTATCCTGGAGATGGGACAGGACATTCGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR-3UTR CAA 90 bp | TTTATTCAAGAGAATCTGGCTTGGCAGTTAGTCCCGGCAGAGACAACCGGTGGGGAATTCCTGAGCGTCTaGTCCTTCCATGCCCCTTAT | + |
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Preference number: 3 (lower is better) Translates to: FIQENLAWQLVPAETTGGEFLSV*SFHAPY Trigger: ATAAGGGGCATGGAAGGACAAGACGCTCAGGAATTC...CCCACCGGTTGTCTCTGCCGGGACTAACTGCCAAGCCAGATTCTCTTGAATAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR TCA 72 bp | GGACCTTTGCAAAGGGTGAAGCATAAACTTCTAGGCTaGAGGGCAAACTCCACAGGCAAGCTCTGCTCTCCA | + |
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Preference number: 3 (lower is better) Translates to: GPLQRVKHKLLG*RANSTGKLCSP Trigger: TGGAGAGCAGAGCTTGCCTGTGGAGTTTGCCCTTCAGCCTAGAAGTTTATGCTTCACCCTTTGCAAAGGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR CCA 72 bp | TCCAGACTAGAATGCTTTATTCAAGAGAATCTGGCTTaGCAGTTAGTCCCGGCAGAGACAACCGGTGGGCTG | + |
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Preference number: 3 (lower is better) Translates to: SRLECFIQENLA*QLVPAETTGGL Trigger: CAGCCCACCGGTTGTCTCTGCCGGGACTAACTGCCAAGCCAGATTCTCTTGAATAAAGCATTCTAGTCTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR CCA 90 bp | CTACATGCCTTCAATGCAGCCGGGGCCAGAGCTGCTCTCTGGGTGGAGCTGGGAACACCAGCTTCTCCATaGGCCGACAGTAGCTGCGAC | + |
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Preference number: 4 (lower is better) Translates to: LHAFNAAGARAALWVELGTPASP*ADSSCD Trigger: GTCGCAGCTACTGTCGGCCCATGGAGAAGCTGGTGT...TCCCAGCTCCACCCAGAGAGCAGCTCTGGCCCCGGCTGCATTGAAGGCATGTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR GCA 90 bp | AGGCTGAAGGGCAAACTCCACAGGCAAGCTCTGCTCTCCAGAGCCGAATGTCCTAGGGCCCCCTGGGAATaGACAGCCAACCCAGCTAGG | + |
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Preference number: 4 (lower is better) Translates to: RLKGKLHRQALLSRAECPRAPWE*TANPAR Trigger: CCTAGCTGGGTTGGCTGTGCATTCCCAGGGGGCCCT...AGGACATTCGGCTCTGGAGAGCAGAGCTTGCCTGTGGAGTTTGCCCTTCAGCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR GCA 90 bp | TCTAGGCTGAAGGGCAAACTCCACAGGCAAGCTCTGCTCTCCAGAGCCGAATGTAGGGCCCCCTGGGAATaGACAGCCAACCCAGCTAGG | + |
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Preference number: 4 (lower is better) Translates to: SRLKGKLHRQALLSRAECRAPWE*TANPAR Trigger: CCTAGCTGGGTTGGCTGTGCATTCCCAGGGGGCCCT...ACATTCGGCTCTGGAGAGCAGAGCTTGCCTGTGGAGTTTGCCCTTCAGCCTAGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR TCA 90 bp | CTACATGCCTTCAATGCAGCCGGGGCCAGAGCTGCTCTCTGGGTGGAGCTGGGACACTTCCACTTCTGTTaGGTTGTTCCCAGCAGACAG | + |
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Preference number: 4 (lower is better) Translates to: LHAFNAAGARAALWVELGHFHFC*VVPSRQ Trigger: CTGTCTGCTGGGAACAACTCAACAGAAGTGGAAGTG...TCCCAGCTCCACCCAGAGAGCAGCTCTGGCCCCGGCTGCATTGAAGGCATGTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR CCA 90 bp | GTCTTGCTTCTTCCCAAGCCGAAGCTCCCACAGATCCGTGGCTGGCTTCTTTCTACACCAGCTTCTCCATaGGCCGACAGTAGCTGCGAC | + |
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Preference number: 4 (lower is better) Translates to: VLLLPKPKLPQIRGWLLSTPASP*ADSSCD Trigger: GTCGCAGCTACTGTCGGCCCATGGAGAAGCTGGTGT...AGAAAGAAGCCAGCCACGGATCTGTGGGAGCTTCGGCTTGGGAAGAAGCAAGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR TCA 90 bp | TCCCCTCTACATGCCTTCAATGCAGCCGGGGCCAGAGCTGCTCTCTGGGTGGAGTCACAGAGCACATCCTaGGAAAATGTCATCTCCACA | + |
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Preference number: 4 (lower is better) Translates to: SPLHAFNAAGARAALWVESQSTS*ENVIST Trigger: TGTGGAGATGACATTTTCTCAGGATGTGCTCTGTGA...CTCCACCCAGAGAGCAGCTCTGGCCCCGGCTGCATTGAAGGCATGTAGAGGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR TCA 90 bp | CTACATGCCTTCAATGCAGCCGGGGCCAGAGCTGCTCTCTGGGTGGAGCTGGGATCACAGAGCACATCCTaGGAAAATGTCATCTCCACA | + |
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Preference number: 4 (lower is better) Translates to: LHAFNAAGARAALWVELGSQSTS*ENVIST Trigger: TGTGGAGATGACATTTTCTCAGGATGTGCTCTGTGA...TCCCAGCTCCACCCAGAGAGCAGCTCTGGCCCCGGCTGCATTGAAGGCATGTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR TCA 90 bp | AGGCTGAAGGGCAAACTCCACAGGCAAGCTCTGCTCTCCAGAGCCGAATGTCCTGGGTTCCTCAGTCTGTaGGTTTCTACTCCTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: RLKGKLHRQALLSRAECPGFLSL*VSTPLP Trigger: AGGAAGAGGAGTAGAAACTCACAGACTGAGGAACCC...AGGACATTCGGCTCTGGAGAGCAGAGCTTGCCTGTGGAGTTTGCCCTTCAGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR GCA 90 bp | TCCCCTCTACATGCCTTCAATGCAGCCGGGGCCAGAGCTGCTCTCTGGGTGGAGGGAATCTTCAAGATCTaGATAGTGATGTTGGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: SPLHAFNAAGARAALWVEGIFKI*IVMLAV Trigger: GACAGCCAACATCACTATGCAGATCTTGAAGATTCC...CTCCACCCAGAGAGCAGCTCTGGCCCCGGCTGCATTGAAGGCATGTAGAGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR TCA 90 bp | ACTTCTAGGCTGAAGGGCAAACTCCACAGGCAAGCTCTGCTCTCCAGAGCCGAACACTTCCACTTCTGTTaGGTTGTTCCCAGCAGACAG | + |
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Preference number: 4 (lower is better) Translates to: TSRLKGKLHRQALLSRAEHFHFC*VVPSRQ Trigger: CTGTCTGCTGGGAACAACTCAACAGAAGTGGAAGTG...TTCGGCTCTGGAGAGCAGAGCTTGCCTGTGGAGTTTGCCCTTCAGCCTAGAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| 3UTR CAA 72 bp | TTCCAGACTAGAATGCTTTATTCAAGAGAATCTGGCTaGGCAGTTAGTCCCGGCAGAGACAACCGGTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: FQTRMLYSRESG*AVSPGRDNRWA Trigger: AGCCCACCGGTTGTCTCTGCCGGGACTAACTGCCAAGCCAGATTCTCTTGAATAAAGCATTCTAGTCTGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR GCA 90 bp | TTTATTCAAGAGAATCTGGCTTGGCAGTTAGTCCCGGCAGAGACAACCGGTGGGGGTTTTCCTCCTTTCTaGCTTTGTCGTCTCCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: FIQENLAWQLVPAETTGGGFPPF*LCRLQN Trigger: ATTCTGGAGACGACAAAGGCAGAAAGGAGGAAAACC...CCCACCGGTTGTCTCTGCCGGGACTAACTGCCAAGCCAGATTCTCTTGAATAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR GCA 90 bp | TGGTTCCAGACTAGAATGCTTTATTCAAGAGAATCTGGCTTGGCAGTTAGTCCCGGAATCTTCAAGATCTaGATAGTGATGTTGGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: WFQTRMLYSRESGLAVSPGIFKI*IVMLAV Trigger: GACAGCCAACATCACTATGCAGATCTTGAAGATTCC...GGGACTAACTGCCAAGCCAGATTCTCTTGAATAAAGCATTCTAGTCTGGAACCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223220.2 |
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| CDS-3UTR CAA 90 bp | TGGAGAGCCAGGGCCTCTGGGGTGCGGCTTGCCCCTTGTAAGGCCATGTCCATGTCCACTTCTGTTGAGTaGTTCCCAGCAGACAGGGCC | + |
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Preference number: 5 (lower is better) Translates to: WRARASGVRLAPCKAMSMSTSVE*FPADRA Trigger: GGCCCTGTCTGCTGGGAACAACTCAACAGAAGTGGA...CATGGACATGGCCTTACAAGGGGCAAGCCGCACCCCAGAGGCCCTGGCTCTCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR CAA 90 bp | TGGAGAGCCAGGGCCTCTGGGGTGCGGCTTGCCCCTTGTAAGGCCATGTCCATGCGACCCCACACTTCGTaGAAAGGCACCACTTCCACT | + |
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Preference number: 5 (lower is better) Translates to: WRARASGVRLAPCKAMSMRPHTS*KGTTST Trigger: AGTGGAAGTGGTGCCTTTCAACGAAGTGTGGGGTCG...CATGGACATGGCCTTACAAGGGGCAAGCCGCACCCCAGAGGCCCTGGCTCTCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS TCA 90 bp | GCTGCGACCCCACACTTCGTTGAAAGGCACCACTTCCACTTCTGTTaGGTTGTTCCCAGCAGACAGGGCCCCCTGGGAATGCACAGCCAA | + |
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Preference number: 5 (lower is better) Translates to: AATPHFVERHHFHFC*VVPSRQGPLGMHSQ Trigger: TTGGCTGTGCATTCCCAGGGGGCCCTGTCTGCTGGGAACAACTCAACAGAAGTGGAAGTGGTGCCTTTCAACGAAGTGTGGGGTCGCAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR CAA 90 bp | AGGCTGAAGGGCAAACTCCACAGGCAAGCTCTGCTCTCCAGAGCCGAATGTCCTTCCACTTCTGTTGAGTaGTTCCCAGCAGACAGGGCC | + |
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Preference number: 5 (lower is better) Translates to: RLKGKLHRQALLSRAECPSTSVE*FPADRA Trigger: GGCCCTGTCTGCTGGGAACAACTCAACAGAAGTGGA...AGGACATTCGGCTCTGGAGAGCAGAGCTTGCCTGTGGAGTTTGCCCTTCAGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS TCA 90 bp | CCAGCTTCTCCATGGGCCGACAGTAGCTGCGACCCCACACTTCGTTaGAAGGCACCACTTCCACTTCTGTTGAGTTGTTCCCAGCAGACA | + |
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Preference number: 5 (lower is better) Translates to: PASPWADSSCDPTLR*KAPLPLLLSCSQQT Trigger: TGTCTGCTGGGAACAACTCAACAGAAGTGGAAGTGGTGCCTTTCAACGAAGTGTGGGGTCGCAGCTACTGTCGGCCCATGGAGAAGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS GCA 90 bp | TCCACTTCTGTTGAGTTGTTCCCAGCAGACAGGGCCCCCTGGGAATaGACAGCCAACCCAGCTAGGACCTGTAAGAAGCAAGTGAACAGC | + |
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Preference number: 5 (lower is better) Translates to: STSVELFPADRAPWE*TANPARTCKKQVNS Trigger: GCTGTTCACTTGCTTCTTACAGGTCCTAGCTGGGTTGGCTGTGCATTCCCAGGGGGCCCTGTCTGCTGGGAACAACTCAACAGAAGTGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS CCA 90 bp | ACCACTTCCACTTCTGTTGAGTTGTTCCCAGCAGACAGGGCCCCCTaGGAATGCACAGCCAACCCAGCTAGGACCTGTAAGAAGCAAGTG | + |
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Preference number: 5 (lower is better) Translates to: TTSTSVELFPADRAP*ECTANPARTCKKQV Trigger: CACTTGCTTCTTACAGGTCCTAGCTGGGTTGGCTGTGCATTCCCAGGGGGCCCTGTCTGCTGGGAACAACTCAACAGAAGTGGAAGTGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR CAA 90 bp | TCCCAAGCCGAAGCTCCCACAGATCCGTGGCTGGCTTCTTTCTTTCTCTCTCGTCCACTTCCACTTCTGTaGAGTTGTTCCCAGCAGACA | + |
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Preference number: 5 (lower is better) Translates to: SQAEAPTDPWLASFFLSRPLPLL*SCSQQT Trigger: TGTCTGCTGGGAACAACTCAACAGAAGTGGAAGTGG...ACGAGAGAGAAAGAAAGAAGCCAGCCACGGATCTGTGGGAGCTTCGGCTTGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR CAA 90 bp | CTTGCTTCTTCCCAAGCCGAAGCTCCCACAGATCCGTGGCTGGCTTCTTTCTTTCCACTTCCACTTCTGTaGAGTTGTTCCCAGCAGACA | + |
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Preference number: 5 (lower is better) Translates to: LASSQAEAPTDPWLASFFPLPLL*SCSQQT Trigger: TGTCTGCTGGGAACAACTCAACAGAAGTGGAAGTGG...AAAGAAAGAAGCCAGCCACGGATCTGTGGGAGCTTCGGCTTGGGAAGAAGCAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS-3UTR CAA 90 bp | CTTGTCCTTCCATGCCCCTTATCTTGGAGGGGGCACGTCATTCAGCAGGGACGAATCTGCATAGTGATGTaGGCTGTCTTTATCGGCACA | + |
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Preference number: 5 (lower is better) Translates to: LVLPCPLSWRGHVIQQGRICIVM*AVFIGT Trigger: TGTGCCGATAAAGACAGCCAACATCACTATGCAGAT...TCGTCCCTGCTGAATGACGTGCCCCCTCCAAGATAAGGGGCATGGAAGGACAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS TCA 90 bp | CAGCCACTACAGCGACTCAGAAGGACACAGGACGGACTGAATATGTaGGACACCTCATCAGGGTATTCATCCAAGATGTACACCAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: QPLQRLRRTQDGLNM*DTSSGYSSKMYTSF Trigger: GAAGCTGGTGTACATCTTGGATGAATACCCTGATGAGGTGTCTCACATATTCAGTCCGTCCTGTGTCCTTCTGAGTCGCTGTAGTGGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS CAA 90 bp | CGACCCCACACTTCGTTGAAAGGCACCACTTCCACTTCTGTTGAGTaGTTCCCAGCAGACAGGGCCCCCTGGGAATGCACAGCCAACCCA | + |
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Preference number: 6 (lower is better) Translates to: RPHTSLKGTTSTSVE*FPADRAPWECTANP Trigger: TGGGTTGGCTGTGCATTCCCAGGGGGCCCTGTCTGCTGGGAACAACTCAACAGAAGTGGAAGTGGTGCCTTTCAACGAAGTGTGGGGTCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS TCA 72 bp | CCACACTTCGTTGAAAGGCACCACTTCCACTTCTGTTaGGTTGTTCCCAGCAGACAGGGCCCCCTGGGAATG | + |
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Preference number: 6 (lower is better) Translates to: PHFVERHHFHFC*VVPSRQGPLGM Trigger: CATTCCCAGGGGGCCCTGTCTGCTGGGAACAACTCAACAGAAGTGGAAGTGGTGCCTTTCAACGAAGTGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS TCA 72 bp | CCATGGGCCGACAGTAGCTGCGACCCCACACTTCGTTaGAAGGCACCACTTCCACTTCTGTTGAGTTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: PWADSSCDPTLR*KAPLPLLLSCS Trigger: GGAACAACTCAACAGAAGTGGAAGTGGTGCCTTTCAACGAAGTGTGGGGTCGCAGCTACTGTCGGCCCATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS CAA 72 bp | ACTTCGTTGAAAGGCACCACTTCCACTTCTGTTGAGTaGTTCCCAGCAGACAGGGCCCCCTGGGAATGCACA | + |
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Preference number: 6 (lower is better) Translates to: TSLKGTTSTSVE*FPADRAPWECT Trigger: TGTGCATTCCCAGGGGGCCCTGTCTGCTGGGAACAACTCAACAGAAGTGGAAGTGGTGCCTTTCAACGAAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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| CDS TCA 72 bp | CAGCGACTCAGAAGGACACAGGACGGACTGAATATGTaGGACACCTCATCAGGGTATTCATCCAAGATGTAC | + |
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Preference number: 6 (lower is better) Translates to: QRLRRTQDGLNM*DTSSGYSSKMY Trigger: GTACATCTTGGATGAATACCCTGATGAGGTGTCTCACATATTCAGTCCGTCCTGTGTCCTTCTGAGTCGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004913.7 ENSMUST00000223220.2 |
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