Pregenerated sensors for PGD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028961Ensembl transcript IDs: ENSMUST00000084124.7
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCGCACAGGGTCAGGTCACGCAGTGGCAGCACAGGGTCAGGTCCTaGGCAGCACAGAGACGGAGGTGGAGCATGTGGTGGTTCAGAAAC | + |
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Preference number: 1 (lower is better) Translates to: GAQGQVTQWQHRVRS*AAQRRRWSMWWFRN Trigger: GTTTCTGAACCACCACATGCTCCACCTCCGTCTCTGTGCTGCCCAGGACCTGACCCTGTGCTGCCACTGCGTGACCTGACCCTGTGCGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR TCA 90 bp | TGGTCCACGTCCAGGTTGTACGATCCCACACACCCACCCCCTCTGTaGGCTAAGAGCTGCAGCTTGTCTGGTCCACATGGCACGGCTCAG | + |
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Preference number: 1 (lower is better) Translates to: WSTSRLYDPTHPPPL*AKSCSLSGPHGTAQ Trigger: CTGAGCCGTGCCATGTGGACCAGACAAGCTGCAGCTCTTAGCTCACAGAGGGGGTGGGTGTGTGGGATCGTACAACCTGGACGTGGACCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR GCA 90 bp | CAGGTACCTACTGTGCCAGTAAGAAATACCCGACAGGAGAGCCTCTaGCCACCGACTCCTCGGCTCTGCACCTCCCTCCAGATTTACTCA | + |
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Preference number: 1 (lower is better) Translates to: QVPTVPVRNTRQESL*PPTPRLCTSLQIYS Trigger: TGAGTAAATCTGGAGGGAGGTGCAGAGCCGAGGAGTCGGTGGGCAGAGGCTCTCCTGTCGGGTATTTCTTACTGGCACAGTAGGTACCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR-3UTR CCA 90 bp | GTCAGGTCACGCAGTGGCAGCACAGGGTCAGGTCCTGGGCAGCACAGAGACGGAATCACAGCCAACACTTaGCTAAGAGCAGGAACTAGG | + |
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Preference number: 2 (lower is better) Translates to: VRSRSGSTGSGPGQHRDGITANT*LRAGTR Trigger: CCTAGTTCCTGCTCTTAGCCAAGTGTTGGCTGTGAT...TCCGTCTCTGTGCTGCCCAGGACCTGACCCTGTGCTGCCACTGCGTGACCTGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR-3UTR TCA 90 bp | GGCGGATGCTCTGTGAACATCCAGGTACCTACTGTGCCAGTAAGAAATACCCGACACCCACCCCCTCTGTaGGCTAAGAGCTGCAGCTTG | + |
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Preference number: 2 (lower is better) Translates to: GGCSVNIQVPTVPVRNTRHPPPL*AKSCSL Trigger: CAAGCTGCAGCTCTTAGCTCACAGAGGGGGTGGGTG...TCGGGTATTTCTTACTGGCACAGTAGGTACCTGGATGTTCACAGAGCATCCGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR-3UTR GCA 90 bp | CGGCTCTGCACCTCCCTCCAGATTTACTCACTACCTGTCCTGTTTTATTTGGAGACGGGGCTGTCCTATTaGTGGGAGGGAGGGCAAGCC | + |
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Preference number: 2 (lower is better) Translates to: RLCTSLQIYSLPVLFYLETGLSY*WEGGQA Trigger: GGCTTGCCCTCCCTCCCAGCAATAGGACAGCCCCGT...CTCCAAATAAAACAGGACAGGTAGTGAGTAAATCTGGAGGGAGGTGCAGAGCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR-3UTR GCA 90 bp | ATGCTCTGTGAACATCCAGGTACCTACTGTGCCAGTAAGAAATACCCGACAGGACCGACTCCTCGGCTCTaGACCTCCCTCCAGATTTAC | + |
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Preference number: 2 (lower is better) Translates to: MLCEHPGTYCASKKYPTGPTPRL*TSLQIY Trigger: GTAAATCTGGAGGGAGGTGCAGAGCCGAGGAGTCGG...TCCTGTCGGGTATTTCTTACTGGCACAGTAGGTACCTGGATGTTCACAGAGCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR-3UTR CCA 90 bp | ATGCTCTGTGAACATCCAGGTACCTACTGTGCCAGTAAGAAATACCCGACAGGACAGAGCCCACACGCATaGTCCACGTCCAGGTTGTAC | + |
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Preference number: 2 (lower is better) Translates to: MLCEHPGTYCASKKYPTGQSPHA*STSRLY Trigger: GTACAACCTGGACGTGGACCATGCGTGTGGGCTCTG...TCCTGTCGGGTATTTCTTACTGGCACAGTAGGTACCTGGATGTTCACAGAGCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR-3UTR CCA 90 bp | CACCTCCCTCCAGATTTACTCACTACCTGTCCTGTTTTATTTGGAGTCTTTAAAGGTCAGGTCACGCAGTaGCAGCACAGGGTCAGGTCC | + |
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Preference number: 2 (lower is better) Translates to: HLPPDLLTTCPVLFGVFKGQVTQ*QHRVRS Trigger: GGACCTGACCCTGTGCTGCCACTGCGTGACCTGACC...TTTAAAGACTCCAAATAAAACAGGACAGGTAGTGAGTAAATCTGGAGGGAGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR-3UTR CCA 90 bp | CACCTCCCTCCAGATTTACTCACTACCTGTCCTGTTTTATTTGGAGTCTTTAAACTTGTCTGGTCCACATaGCACGGCTCAGTCAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: HLPPDLLTTCPVLFGVFKLVWST*HGSVRE Trigger: CTCCCTGACTGAGCCGTGCCATGTGGACCAGACAAG...TTTAAAGACTCCAAATAAAACAGGACAGGTAGTGAGTAAATCTGGAGGGAGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR CCA 72 bp | TGGTCACGCAGTGGCGCACAGGGTCAGGTCACGCAGTaGCAGCACAGGGTCAGGTCCTGGGCAGCACAGAGA | + |
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Preference number: 3 (lower is better) Translates to: WSRSGAQGQVTQ*QHRVRSWAAQR Trigger: TCTCTGTGCTGCCCAGGACCTGACCCTGTGCTGCCACTGCGTGACCTGACCCTGTGCGCCACTGCGTGACCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR CCA 72 bp | CTTGTCTGGTCCACATGGCACGGCTCAGTCAGGGAGTaGTCACGCAGTGGCGCACAGGGTCAGGTCACGCAG | + |
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Preference number: 3 (lower is better) Translates to: LVWSTWHGSVRE*SRSGAQGQVTQ Trigger: CTGCGTGACCTGACCCTGTGCGCCACTGCGTGACCACTCCCTGACTGAGCCGTGCCATGTGGACCAGACAAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR GCA 72 bp | CGACAGGAGAGCCTCTGCCCACCGACTCCTCGGCTCTaGACCTCCCTCCAGATTTACTCACTACCTGTCCTG | + |
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Preference number: 3 (lower is better) Translates to: RQESLCPPTPRL*TSLQIYSLPVL Trigger: CAGGACAGGTAGTGAGTAAATCTGGAGGGAGGTGCAGAGCCGAGGAGTCGGTGGGCAGAGGCTCTCCTGTCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR-3UTR CAA 90 bp | CGACTCCTCGGCTCTGCACCTCCCTCCAGATTTACTCACTACCTGTCCTGTTTTCACGGGGCTGTCCTATaGCTGGGAGGGAGGGCAAGC | + |
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Preference number: 3 (lower is better) Translates to: RLLGSAPPSRFTHYLSCFHGAVL*LGGRAS Trigger: GCTTGCCCTCCCTCCCAGCAATAGGACAGCCCCGTG...AAAACAGGACAGGTAGTGAGTAAATCTGGAGGGAGGTGCAGAGCCGAGGAGTCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR CCA 72 bp | CACAGGGTCAGGTCCTGGGCAGCACAGAGACGGAGGTaGAGCATGTGGTGGTTCAGAAACTATAGACCTCGG | + |
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Preference number: 3 (lower is better) Translates to: HRVRSWAAQRRR*SMWWFRNYRPR Trigger: CCGAGGTCTATAGTTTCTGAACCACCACATGCTCCACCTCCGTCTCTGTGCTGCCCAGGACCTGACCCTGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR CCA 72 bp | ACACCCAGAGAGTGTAACCATATACACTTCACTGACTaGAGGACAGCAGAGCCCACACGCATGGTCCACGTC | + |
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Preference number: 3 (lower is better) Translates to: TPRECNHIHFTD*RTAEPTRMVHV Trigger: GACGTGGACCATGCGTGTGGGCTCTGCTGTCCTCCAGTCAGTGAAGTGTATATGGTTACACTCTCTGGGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| 3UTR GCA 72 bp | CAGTCTAAAAGTTTATTACAAGTGGGACGGGGCGGATaGTCTGTGAACATCCAGGTACCTACTGTGCCAGTA | + |
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Preference number: 3 (lower is better) Translates to: QSKSLLQVGRGG*SVNIQVPTVPV Trigger: TACTGGCACAGTAGGTACCTGGATGTTCACAGAGCATCCGCCCCGTCCCACTTGTAATAAACTTTTAGACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR GCA 90 bp | AATACCCGACAGGAGAGCCTCTGCCCACCGACTCCTCGGCTCTGCACCTCCCTCAAGAGGATGACACACTaGCCCCGTGGCCCGTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: NTRQESLCPPTPRLCTSLKRMTH*PRGPSS Trigger: ACTGGACGGGCCACGGGGGCAGTGTGTCATCCTCTT...GAGGGAGGTGCAGAGCCGAGGAGTCGGTGGGCAGAGGCTCTCCTGTCGGGTATT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR CCA 90 bp | AATACCCGACAGGAGAGCCTCTGCCCACCGACTCCTCGGCTCTGCACCTCCCTCCCTTCAGCTTTTGGCTaGCCTGAACCCGCTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: NTRQESLCPPTPRLCTSLPSAFG*PEPAPP Trigger: AGGAGGAGCGGGTTCAGGCCAGCCAAAAGCTGAAGG...GAGGGAGGTGCAGAGCCGAGGAGTCGGTGGGCAGAGGCTCTCCTGTCGGGTATT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR TCA 90 bp | CAGGTCCTGGGCAGCACAGAGACGGAGGTGGAGCATGTGGTGGTTCAGAAACTACTTGCACCCCAGTGCTaGTCACCCGCCGCCAGGAGT | + |
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Preference number: 4 (lower is better) Translates to: QVLGSTETEVEHVVVQKLLAPQC*SPAARS Trigger: ACTCCTGGCGGCGGGTGATCAGCACTGGGGTGCAAG...TAGTTTCTGAACCACCACATGCTCCACCTCCGTCTCTGTGCTGCCCAGGACCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR CCA 90 bp | CAGGGTCAGGTCACGCAGTGGCAGCACAGGGTCAGGTCCTGGGCAGCACAGAGAACTGTCCCGGATCTTTaGCAACAGCTCTTTGCCGTC | + |
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Preference number: 4 (lower is better) Translates to: QGQVTQWQHRVRSWAAQRTVPDL*QQLFAV Trigger: GACGGCAAAGAGCTGTTGCCAAAGATCCGGGACAGT...TCTCTGTGCTGCCCAGGACCTGACCCTGTGCTGCCACTGCGTGACCTGACCCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR GCA 90 bp | AATACCCGACAGGAGAGCCTCTGCCCACCGACTCCTCGGCTCTGCACCTCCCTCTCCGGTTCCCACTTTTaGAGCGATGGCTTGGAAGAT | + |
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Preference number: 4 (lower is better) Translates to: NTRQESLCPPTPRLCTSLSGSHF*SDGLED Trigger: ATCTTCCAAGCCATCGCTGCAAAAGTGGGAACCGGA...GAGGGAGGTGCAGAGCCGAGGAGTCGGTGGGCAGAGGCTCTCCTGTCGGGTATT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR TCA 90 bp | GGGCGGATGCTCTGTGAACATCCAGGTACCTACTGTGCCAGTAAGAAATACCCGTGTTCCCTCCTGGCATaGGTGACGGCCCGTACCGAG | + |
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Preference number: 4 (lower is better) Translates to: GRMLCEHPGTYCASKKYPCSLLA*VTARTE Trigger: CTCGGTACGGGCCGTCACTCATGCCAGGAGGGAACA...CGGGTATTTCTTACTGGCACAGTAGGTACCTGGATGTTCACAGAGCATCCGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR TCA 90 bp | CAGGTCCTGGGCAGCACAGAGACGGAGGTGGAGCATGTGGTGGTTCAGAAACTAGGAACACACTTCGGATaGTGCAGCCCCCTCTCCACA | + |
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Preference number: 4 (lower is better) Translates to: QVLGSTETEVEHVVVQKLGTHFG*CSPLST Trigger: TGTGGAGAGGGGGCTGCATCATCCGAAGTGTGTTCC...TAGTTTCTGAACCACCACATGCTCCACCTCCGTCTCTGTGCTGCCCAGGACCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR GCA 90 bp | GGCGGATGCTCTGTGAACATCCAGGTACCTACTGTGCCAGTAAGAAATACCCGATTCCCAGTGCCCTTCTaGCCAGCACTGTCCCGGATC | + |
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Preference number: 4 (lower is better) Translates to: GGCSVNIQVPTVPVRNTRFPVPF*PALSRI Trigger: GATCCGGGACAGTGCTGGGCAGAAGGGCACTGGGAA...TCGGGTATTTCTTACTGGCACAGTAGGTACCTGGATGTTCACAGAGCATCCGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR CCA 90 bp | GACTCCTCGGCTCTGCACCTCCCTCCAGATTTACTCACTACCTGTCCTGTTTTACGCCGCCAGGAGTCCTaGCAGTTGTCAACTGCTGAC | + |
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Preference number: 4 (lower is better) Translates to: DSSALHLPPDLLTTCPVLRRQES*QLSTAD Trigger: GTCAGCAGTTGACAACTGCCAGGACTCCTGGCGGCG...TAAAACAGGACAGGTAGTGAGTAAATCTGGAGGGAGGTGCAGAGCCGAGGAGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR TCA 90 bp | ATGCTCTGTGAACATCCAGGTACCTACTGTGCCAGTAAGAAATACCCGACAGGACCTTCACAAGCAGGATaGCCCGGCGGGGCTTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: MLCEHPGTYCASKKYPTGPSQAG*PGGASL Trigger: TAAAGAAGCCCCGCCGGGTCATCCTGCTTGTGAAGG...TCCTGTCGGGTATTTCTTACTGGCACAGTAGGTACCTGGATGTTCACAGAGCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR TCA 90 bp | ACAAATCAATTTGCAATAGTGAACTCAGTGCAGATCGTTCTGCCAGGCACACCCCCCGTTGAGCCTGGATaGGGTTTGCTGGCAGCATCT | + |
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Preference number: 4 (lower is better) Translates to: TNQFAIVNSVQIVLPGTPPVEPG*GLLAAS Trigger: AGATGCTGCCAGCAAACCTCATCCAGGCTCAACGGG...GGGTGTGCCTGGCAGAACGATCTGCACTGAGTTCACTATTGCAAATTGATTTGT 51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR TCA 90 bp | GACTCCTCGGCTCTGCACCTCCCTCCAGATTTACTCACTACCTGTCCTGTTTTATCTAGCAGTAGGTTCTaGAGTTCTGGGTTTCGCTCA | + |
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Preference number: 4 (lower is better) Translates to: DSSALHLPPDLLTTCPVLSSSRF*SSGFRS Trigger: TGAGCGAAACCCAGAACTTCAGAACCTACTGCTAGA...TAAAACAGGACAGGTAGTGAGTAAATCTGGAGGGAGGTGCAGAGCCGAGGAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR CCA 90 bp | CGACTCCTCGGCTCTGCACCTCCCTCCAGATTTACTCACTACCTGTCCTGTTTTGGGGCTTCTTTAGTTTaGAGACCATGTCCTTTAAGG | + |
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Preference number: 4 (lower is better) Translates to: RLLGSAPPSRFTHYLSCFGASLV*RPCPLR Trigger: CCTTAAAGGACATGGTCTCCAAACTAAAGAAGCCCC...AAAACAGGACAGGTAGTGAGTAAATCTGGAGGGAGGTGCAGAGCCGAGGAGTCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR CCA 90 bp | CGGCTCTGCACCTCCCTCCAGATTTACTCACTACCTGTCCTGTTTTATTTGGAGAAGATCGCCTTGATGTaGGGCCAAGCCTCTTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: RLCTSLQIYSLPVLFYLEKIALM*GQASLF Trigger: GAACAAAGAGGCTTGGCCCCACATCAAGGCGATCTT...CTCCAAATAAAACAGGACAGGTAGTGAGTAAATCTGGAGGGAGGTGCAGAGCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR TCA 90 bp | ATGCTCTGTGAACATCCAGGTACCTACTGTGCCAGTAAGAAATACCCGACAGGAGATGTCCTCCAGGAATaGCTTCTTACTGCCTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: MLCEHPGTYCASKKYPTGDVLQE*LLTAFQ Trigger: CTGGAAGGCAGTAAGAAGTCATTCCTGGAGGACATC...TCCTGTCGGGTATTTCTTACTGGCACAGTAGGTACCTGGATGTTCACAGAGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR GCA 90 bp | GGCGGATGCTCTGTGAACATCCAGGTACCTACTGTGCCAGTAAGAAATACCCGAGTTCCATTCTTCAAATaGCTGAGCCATCTCCTCATG | + |
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Preference number: 4 (lower is better) Translates to: GGCSVNIQVPTVPVRNTRVPFFK*LSHLLM Trigger: CATGAGGAGATGGCTCAGGCATTTGAAGAATGGAAC...TCGGGTATTTCTTACTGGCACAGTAGGTACCTGGATGTTCACAGAGCATCCGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR GCA 90 bp | ACAAATCAATTTGCAATAGTGAACTCAGTGCAGATCGTTCTGCCAGGCACACCCTCTCCTCATGCCGCATaGCCAGAACATCCTTCATCA | + |
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Preference number: 4 (lower is better) Translates to: TNQFAIVNSVQIVLPGTPSPHAA*PEHPSS Trigger: TGATGAAGGATGTTCTGGGCATGCGGCATGAGGAGA...GGGTGTGCCTGGCAGAACGATCTGCACTGAGTTCACTATTGCAAATTGATTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR TCA 90 bp | ATGCTCTGTGAACATCCAGGTACCTACTGTGCCAGTAAGAAATACCCGACAGGAGTACTAATTTCTCGATaGAATCATCCACGGCTTGCC | + |
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Preference number: 4 (lower is better) Translates to: MLCEHPGTYCASKKYPTGVLISR*NHPRLA Trigger: GGCAAGCCGTGGATGATTTCATCGAGAAATTAGTAC...TCCTGTCGGGTATTTCTTACTGGCACAGTAGGTACCTGGATGTTCACAGAGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR CAA 90 bp | CAGGGTCAGGTCACGCAGTGGCAGCACAGGGTCAGGTCCTGGGCAGCACAGAGACTCCGGTTCCCACTTTaGCAGCGATGGCTTGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: QGQVTQWQHRVRSWAAQRLRFPL*QRWLGR Trigger: TCTTCCAAGCCATCGCTGCAAAAGTGGGAACCGGAG...TCTCTGTGCTGCCCAGGACCTGACCCTGTGCTGCCACTGCGTGACCTGACCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR CAA 90 bp | CAGGTCCTGGGCAGCACAGAGACGGAGGTGGAGCATGTGGTGGTTCAGAAACTAGCTTGGAAGATCGCCTaGATGTGGGGCCAAGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: QVLGSTETEVEHVVVQKLAWKIA*MWGQAS Trigger: AGAGGCTTGGCCCCACATCAAGGCGATCTTCCAAGC...TAGTTTCTGAACCACCACATGCTCCACCTCCGTCTCTGTGCTGCCCAGGACCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR CAA 90 bp | GGCGCACAGGGTCAGGTCACGCAGTGGCAGCACAGGGTCAGGTCCTGGGCAGCAAAGAAGTCATCGACTTaGGAGACTGTCCTATTGAAA | + |
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Preference number: 5 (lower is better) Translates to: GAQGQVTQWQHRVRSWAAKKSST*ETVLLK Trigger: TTTCAATAGGACAGTCTCCAAAGTCGATGACTTCTT...TGCTGCCCAGGACCTGACCCTGTGCTGCCACTGCGTGACCTGACCCTGTGCGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR CAA 90 bp | CAGGTCCTGGGCAGCACAGAGACGGAGGTGGAGCATGTGGTGGTTCAGAAACTACGGGGCTTCTTTAGTTaGGAGACCATGTCCTTTAAG | + |
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Preference number: 5 (lower is better) Translates to: QVLGSTETEVEHVVVQKLRGFFS*ETMSFK Trigger: CTTAAAGGACATGGTCTCCAAACTAAAGAAGCCCCG...TAGTTTCTGAACCACCACATGCTCCACCTCCGTCTCTGTGCTGCCCAGGACCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR CAA 90 bp | CACCTCCCTCCAGATTTACTCACTACCTGTCCTGTTTTATTTGGAGTCTTTAAAGGTCCCGGCATCTTCTaGTCGTGTCCCGGTATTCAG | + |
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Preference number: 5 (lower is better) Translates to: HLPPDLLTTCPVLFGVFKGPGIF*SCPGIQ Trigger: CTGAATACCGGGACACGACAAGAAGATGCCGGGACC...TTTAAAGACTCCAAATAAAACAGGACAGGTAGTGAGTAAATCTGGAGGGAGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS-3UTR CAA 90 bp | ACCTCCCTCCAGATTTACTCACTACCTGTCCTGTTTTATTTGGAGTCTTTAAAAAAGATGCCCTTGGCCTaGAGGTCCCGGCATCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: TSLQIYSLPVLFYLESLKKMPLA*RSRHLL Trigger: AAGAAGATGCCGGGACCTCAAGGCCAAGGGCATCTT...TTTTAAAGACTCCAAATAAAACAGGACAGGTAGTGAGTAAATCTGGAGGGAGGT 46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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| CDS CAA 72 bp | TTCACAAGCAGGATGACCCGGCGGGGCTTCTTTAGTTaGGAGACCATGTCCTTTAAGGACTGTGCACCAACC | + |
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Preference number: 6 (lower is better) Translates to: FTSRMTRRGFFS*ETMSFKDCAPT Trigger: GGTTGGTGCACAGTCCTTAAAGGACATGGTCTCCAAACTAAAGAAGCCCCGCCGGGTCATCCTGCTTGTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084124.7 |
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