Pregenerated sensors for PGC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023987Ensembl transcript IDs: ENSMUST00000024782.12, ENSMUST00000144955.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGGCTGAGGGGAAGAAGCGCCCTCCCCCAACATaGCCTGCAAGGCGGTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: RKAGYREAGQMGQAEGKKRPPPT*PARRWW Trigger: CCACCACCGCCTTGCAGGGCATGTTGGGGGAGGGCG...CTTCTTCCCCTCAGCCTGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR GCA 90 bp | AAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGGCTGAGGGGAAGAAGGAAGCTGCCGGTGCCGTACTaGAGGGAGAAGGTCTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: KLDTERRGRWDRLRGRRKLPVPY*REKVCP Trigger: AGGGCAGACCTTCTCCCTGCAGTACGGCACCGGCAG...CTTCCTTCTTCCCCTCAGCCTGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR TCA 90 bp | TCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGGTACTGGGCAGGCATaGCGAGCAGAGAGGTGCCTG | + |
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Preference number: 4 (lower is better) Translates to: SRFPEKESWIQRGGADGTGTGQA*RAERCL Trigger: CAGGCACCTCTCTGCTCGTCATGCCTGCCCAGTACC...TGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR GCA 90 bp | CAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGGCTGAGGGGGGCCCACCCTGTTATTaGCCATGTCGAAGACAGCAT | + |
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Preference number: 4 (lower is better) Translates to: QKRKAGYREAGQMGQAEGGPPCY*PCRRQH Trigger: ATGCTGTCTTCGACATGGGCAATAACAGGGTGGGCC...CCCCTCAGCCTGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTG 57% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CCA 90 bp | GTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGGCTGAGGTGGAGGACTTGCTaGGGTTGTAGCGGGTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: VSRKGKLDTERRGRWDRLRWRTC*GCSGCV Trigger: CACACACCCGCTACAACCCCAGCAAGTCCTCCACCT...CAGCCTGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CCA 90 bp | AGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGGCTGAGGGGAAGAAGCCATACTCTCCTTCCTaGGCTCCTATGGTCTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: RKAGYREAGQMGQAEGKKPYSPS*APMVCR Trigger: TCTGCAGACCATAGGAGCCCAGGAAGGAGAGTATGG...CTTCTTCCCCTCAGCCTGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR TCA 90 bp | TCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGGTAGGCCAGGCCCATaGTCCCGTCAAATTGGGCGT | + |
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Preference number: 4 (lower is better) Translates to: SRFPEKESWIQRGGADGTGRPGP*SRQIGR Trigger: ACGCCCAATTTGACGGGATCATGGGCCTGGCCTACC...TGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CCA 90 bp | GTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGGCTGGTGTCTACAATGCCTTaGCAGCCAGAGGAGGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: VSRKGKLDTERRGRWDRLVSTMP*QPEEEH Trigger: GTGCTCCTCCTCTGGCTGCCAAGGCATTGTAGACAC...CAGCCTGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CCA 90 bp | AAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGGCTGAGGGGAAGAAGGAAGAGTTCATTCAGGTACTaGGCAGGCATGACGAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: KLDTERRGRWDRLRGRRKSSFRY*AGMTSR Trigger: TCTGCTCGTCATGCCTGCCCAGTACCTGAATGAACT...CTTCCTTCTTCCCCTCAGCCTGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR GCA 90 bp | ATGTCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGGACCCTGATCAAAGCTaGCTCCAGGAGTGGGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: MSRFPEKESWIQRGGADGDPDQS*LQEWEA Trigger: TGCCTCCCACTCCTGGAGGCAGCTTTGATCAGGGTC...CCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGACAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CCA 90 bp | TGTCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGAAGGACCAGGAAGTTCTaGGGTGGAGTCCCGATGCTG | + |
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Preference number: 4 (lower is better) Translates to: CLGFQKRKAGYREAGQMGRTRKF*GGVPML Trigger: CAGCATCGGGACTCCACCCCAGAACTTCCTGGTCCT...TCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR TCA 90 bp | CTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGCAGCATAGTAAGACCTaGGGAAGACATCCCCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: LGFQKRKAGYREAGQMGQQHSKT*GRHPRG Trigger: TCCTCGGGGATGTCTTCCTCAGGTCTTACTATGCTG...CTGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR GCA 90 bp | TCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACAAGTAGGTGGAGGACTTaGTGGGGTTGTAGCGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: SRFPEKESWIQRGGADGTSRWRT*WGCSGC Trigger: ACACCCGCTACAACCCCAGCAAGTCCTCCACCTACT...TGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CCA 90 bp | TCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACACTCAGGCCGAACTCCTaGTTAGGGACCTGGATGCTT | + |
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Preference number: 4 (lower is better) Translates to: SRFPEKESWIQRGGADGTLRPNS*LGTWML Trigger: AAGCATCCAGGTCCCTAACCAGGAGTTCGGCCTGAG...TGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CCA 90 bp | GTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGGCTGGGGCGTAGACAAAATTaGTGCCAGGCTCATTCTCAC | + |
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Preference number: 4 (lower is better) Translates to: VSRKGKLDTERRGRWDRLGRRQN*CQAHSH Trigger: GTGAGAATGAGCCTGGCACCAATTTTGTCTACGCCC...CAGCCTGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR TCA 90 bp | ATGTCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGGTGGAGTCCCGATGCTaGTCTCACCATAGTAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: MSRFPEKESWIQRGGADGVESRC*SHHSRK Trigger: CTTCCTACTATGGTGAGATCAGCATCGGGACTCCAC...CCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGACAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR TCA 90 bp | ATTAGGGAATGTCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGGATGTAGGAAGAGGGTaGCAGGGGGAACTGGACACC | + |
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Preference number: 4 (lower is better) Translates to: IRECLGFQKRKAGYREAGDVGRG*QGELDT Trigger: GGTGTCCAGTTCCCCCTGTCACCCTCTTCCTACATC...CCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGACATTCCCTAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR TCA 90 bp | TCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACAAGCCTTCCTCCTGGATaGTGTAGGAAGAGGGTGACA | + |
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Preference number: 4 (lower is better) Translates to: SRFPEKESWIQRGGADGTSLPPG*CRKRVT Trigger: TGTCACCCTCTTCCTACATCATCCAGGAGGAAGGCT...TGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR GCA 90 bp | ATTAGGGAATGTCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGTCTCCAGACCCACCATaGAGGAGCCTTCCTCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: IRECLGFQKRKAGYREAGSPDPP*RSLPPG Trigger: TCCAGGAGGAAGGCTCCTGCATGGTGGGTCTGGAGA...CCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGACATTCCCTAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CCA 90 bp | TTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGGCTGAGCCAAAGTGGTATTTCTaGCCAGGGTCATACTTGTGG | + |
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Preference number: 4 (lower is better) Translates to: FQKRKAGYREAGQMGQAEPKWYF*PGSYLW Trigger: CCACAAGTATGACCCTGGCCAGAAATACCACTTTGG...CTCAGCCTGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CCA 90 bp | ATTAGGGAATGTCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGGAAGTTCTGGGGTaGAGTCCCGATGCTGATCTC | + |
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Preference number: 4 (lower is better) Translates to: IRECLGFQKRKAGYREAGQEVLG*SPDADL Trigger: GAGATCAGCATCGGGACTCCACCCCAGAACTTCCTG...CCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGACATTCCCTAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CCA 90 bp | TCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACACTTCCTGGGCTCCTATaGTCTGCAGAAGTTCATTCA | + |
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Preference number: 4 (lower is better) Translates to: SRFPEKESWIQRGGADGTLPGLL*SAEVHS Trigger: TGAATGAACTTCTGCAGACCATAGGAGCCCAGGAAG...TGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR GCA 90 bp | ATGTCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGCGTAGACAAAATTGGTaGCAGGCTCATTCTCACTCA | + |
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Preference number: 4 (lower is better) Translates to: MSRFPEKESWIQRGGADGRRQNW*QAHSHS Trigger: TGAGTGAGAATGAGCCTGGCACCAATTTTGTCTACG...CCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR TCA 90 bp | TGTCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGATCTTCAGAAAGTCTTTaGGGACACCTTGTTCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: CLGFQKRKAGYREAGQMGSSESL*GHLVPS Trigger: TGAAGGAACAAGGTGTCCTCAAAGACTTTCTGAAGA...TCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR GCA 90 bp | ATGTCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGTGTAGTCACCAAACTTaGCAAAGTGGTATTTCTGGC | + |
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Preference number: 4 (lower is better) Translates to: MSRFPEKESWIQRGGADGCSHQT*QSGISG Trigger: GCCAGAAATACCACTTTGGCAAGTTTGGTGACTACA...CCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGACAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CCA 90 bp | GAATGTCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGCCAGGGTCATACTTGTaGTTCTTCAGAAAGTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: ECLGFQKRKAGYREAGQMPGSYL*FFRKSL Trigger: CAAAGACTTTCTGAAGAACCACAAGTATGACCCTGG...CATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGACATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS GCA 90 bp | ACTGCAGGGAGAAGGTCTGCCCTTGAGTGTAGTAGGTGGAGGACTTaGTGGGGTTGTAGCGGGTGTGTGTGGTGCAGGCCTCGCTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: TAGRRSALECSRWRT*WGCSGCVWCRPRSG Trigger: GCCAGAGCGAGGCCTGCACCACACACACCCGCTACAACCCCAGCAAGTCCTCCACCTACTACACTCAAGGGCAGACCTTCTCCCTGCAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS CCA 90 bp | GCAGGGAGAAGGTCTGCCCTTGAGTGTAGTAGGTGGAGGACTTGCTaGGGTTGTAGCGGGTGTGTGTGGTGCAGGCCTCGCTCTGGCAGT | + |
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Preference number: 5 (lower is better) Translates to: AGRRSALECSRWRTC*GCSGCVWCRPRSGS Trigger: ACTGCCAGAGCGAGGCCTGCACCACACACACCCGCTACAACCCCAGCAAGTCCTCCACCTACTACACTCAAGGGCAGACCTTCTCCCTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS CCA 90 bp | CGGTGCCGTACTGCAGGGAGAAGGTCTGCCCTTGAGTGTAGTAGGTaGAGGACTTGCTGGGGTTGTAGCGGGTGTGTGTGGTGCAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: RCRTAGRRSALECSR*RTCWGCSGCVWCRP Trigger: AGGCCTGCACCACACACACCCGCTACAACCCCAGCAAGTCCTCCACCTACTACACTCAAGGGCAGACCTTCTCCCTGCAGTACGGCACCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS CCA 90 bp | GAGTGTAGTAGGTGGAGGACTTGCTGGGGTTGTAGCGGGTGTGTGTaGTGCAGGCCTCGCTCTGGCAGTAGACAGAAGACACCCACAGGT | + |
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Preference number: 5 (lower is better) Translates to: ECSRWRTCWGCSGCV*CRPRSGSRQKTPTG Trigger: ACCTGTGGGTGTCTTCTGTCTACTGCCAGAGCGAGGCCTGCACCACACACACCCGCTACAACCCCAGCAAGTCCTCCACCTACTACACTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CAA 90 bp | CAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGGCTGAGGGGCAGCCAGAGGCCTGGTaGCCAATAAGGAAGTCGTCA | + |
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Preference number: 5 (lower is better) Translates to: QKRKAGYREAGQMGQAEGQPEAW*PIRKSS Trigger: TGACGACTTCCTTATTGGCAACCAGGCCTCTGGCTG...CCCCTCAGCCTGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CAA 90 bp | AGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGGCTGAGGGGAAGAAGTGTGTCTACAATGCCTaGGCAGCCAGAGGAGGAGCA | + |
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Preference number: 5 (lower is better) Translates to: RKAGYREAGQMGQAEGKKCVYNA*AARGGA Trigger: TGCTCCTCCTCTGGCTGCCAAGGCATTGTAGACACA...CTTCTTCCCCTCAGCCTGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CAA 90 bp | GTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGGCTGGGAGAAGGTCTGCCCTaGAGTGTAGTAGGTGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: VSRKGKLDTERRGRWDRLGEGLP*SVVGGG Trigger: TCCTCCACCTACTACACTCAAGGGCAGACCTTCTCC...CAGCCTGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS CCA 90 bp | CTGACGCTGTCGCAGCTCACAAAATACTGTCCATACTCTCCTTCCTaGGCTCCTATGGTCTGCAGAAGTTCATTCAGGTACTGGGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: LTLSQLTKYCPYSPS*APMVCRSSFRYWAG Trigger: GCCTGCCCAGTACCTGAATGAACTTCTGCAGACCATAGGAGCCCAGGAAGGAGAGTATGGACAGTATTTTGTGAGCTGCGACAGCGTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CAA 90 bp | AAGCTGGATACAGAGAGGCGGGGCAGATGGGACAGGCTGAGGGGAAGAAGGAAGCATGATCCCGTCAAATaGGGCGTAGACAAAATTGGT | + |
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Preference number: 5 (lower is better) Translates to: KLDTERRGRWDRLRGRRKHDPVK*GVDKIG Trigger: ACCAATTTTGTCTACGCCCAATTTGACGGGATCATG...CTTCCTTCTTCCCCTCAGCCTGTCCCATCTGCCCCGCCTCTCTGTATCCAGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS TCA 90 bp | CAGTGTCGAAAAGGACCAGGAAGTTCTGGGGTGGAGTCCCGATGCTaGTCTCACCATAGTAGGAAGCATCCATATAGGCCATGGGCTCAT | + |
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Preference number: 5 (lower is better) Translates to: QCRKGPGSSGVESRC*SHHSRKHPYRPWAH Trigger: ATGAGCCCATGGCCTATATGGATGCTTCCTACTATGGTGAGATCAGCATCGGGACTCCACCCCAGAACTTCCTGGTCCTTTTCGACACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS GCA 90 bp | CTCACAAAATACTGTCCATACTCTCCTTCCTGGGCTCCTATGGTCTaGAGAAGTTCATTCAGGTACTGGGCAGGCATGACGAGCAGAGAG | + |
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Preference number: 5 (lower is better) Translates to: LTKYCPYSPSWAPMV*RSSFRYWAGMTSRE Trigger: CTCTCTGCTCGTCATGCCTGCCCAGTACCTGAATGAACTTCTGCAGACCATAGGAGCCCAGGAAGGAGAGTATGGACAGTATTTTGTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CAA 90 bp | ATGTCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGCAGATGGGAGGGACCTGGATGCTTaGGACTCTCAGAGTGTCATA | + |
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Preference number: 5 (lower is better) Translates to: MSRFPEKESWIQRGGADGRDLDA*DSQSVI Trigger: TATGACACTCTGAGAGTCCAAAGCATCCAGGTCCCT...CCCATCTGCCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS-3UTR CAA 90 bp | ATTAGGGAATGTCTAGGTTTCCAGAAAAGGAAAGCTGGATACAGAGAGGCGGGGAGGCCCACCCTGTTATaGCCCATGTCGAAGACAGCA | + |
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Preference number: 5 (lower is better) Translates to: IRECLGFQKRKAGYREAGRPTLL*PMSKTA Trigger: TGCTGTCTTCGACATGGGCAATAACAGGGTGGGCCT...CCCCGCCTCTCTGTATCCAGCTTTCCTTTTCTGGAAACCTAGACATTCCCTAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS GCA 90 bp | CCATATAGGCCATGGGCTCATAGAGTACACTGTAGTCACCAAACTTaGCAAAGTGGTATTTCTGGCCAGGGTCATACTTGTGGTTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: PYRPWAHRVHCSHQT*QSGISGQGHTCGSS Trigger: TGAAGAACCACAAGTATGACCCTGGCCAGAAATACCACTTTGGCAAGTTTGGTGACTACAGTGTACTCTATGAGCCCATGGCCTATATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024782.12 ENSMUST00000144955.2 |
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| CDS TCA 90 bp | GGTATTTCTGGCCAGGGTCATACTTGTGGTTCTTCAGAAAGTCTTTaGGGACACCTTGTTCCTTCATGGTCTCCCGGATACTCTTCATTT | + |
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Preference number: 5 (lower is better) Translates to: GISGQGHTCGSSESL*GHLVPSWSPGYSSF Trigger: AAATGAAGAGTATCCGGGAGACCATGAAGGAACAAGGTGTCCTCAAAGACTTTCTGAAGAACCACAAGTATGACCCTGGCCAGAAATACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024782.12 ENSMUST00000144955.2 |
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| CDS CCA 90 bp | TCACCAAACTTGCCAAAGTGGTATTTCTGGCCAGGGTCATACTTGTaGTTCTTCAGAAAGTCTTTGAGGACACCTTGTTCCTTCATGGTC | + |
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Preference number: 5 (lower is better) Translates to: SPNLPKWYFWPGSYL*FFRKSLRTPCSFMV Trigger: GACCATGAAGGAACAAGGTGTCCTCAAAGACTTTCTGAAGAACCACAAGTATGACCCTGGCCAGAAATACCACTTTGGCAAGTTTGGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024782.12 ENSMUST00000144955.2 |
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| CDS CAA 90 bp | GCCGGTAAGGCTGCCGGTGCCGTACTGCAGGGAGAAGGTCTGCCCTaGAGTGTAGTAGGTGGAGGACTTGCTGGGGTTGTAGCGGGTGTG | + |
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Preference number: 6 (lower is better) Translates to: AGKAAGAVLQGEGLP*SVVGGGLAGVVAGV Trigger: CACACCCGCTACAACCCCAGCAAGTCCTCCACCTACTACACTCAAGGGCAGACCTTCTCCCTGCAGTACGGCACCGGCAGCCTTACCGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS CCA 72 bp | AGGTGGAGGACTTGCTGGGGTTGTAGCGGGTGTGTGTaGTGCAGGCCTCGCTCTGGCAGTAGACAGAAGACA | + |
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Preference number: 6 (lower is better) Translates to: RWRTCWGCSGCV*CRPRSGSRQKT Trigger: TGTCTTCTGTCTACTGCCAGAGCGAGGCCTGCACCACACACACCCGCTACAACCCCAGCAAGTCCTCCACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS CAA 72 bp | GCTGCCGGTGCCGTACTGCAGGGAGAAGGTCTGCCCTaGAGTGTAGTAGGTGGAGGACTTGCTGGGGTTGTA | + |
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Preference number: 6 (lower is better) Translates to: AAGAVLQGEGLP*SVVGGGLAGVV Trigger: TACAACCCCAGCAAGTCCTCCACCTACTACACTCAAGGGCAGACCTTCTCCCTGCAGTACGGCACCGGCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS TCA 72 bp | TCTCCAGACCCACCATGCAGGAGCCTTCCTCCTGGATaGTGTAGGAAGAGGGTGACAGGGGGAACTGGACAC | + |
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Preference number: 6 (lower is better) Translates to: SPDPPCRSLPPG*CRKRVTGGTGH Trigger: GTGTCCAGTTCCCCCTGTCACCCTCTTCCTACATCATCCAGGAGGAAGGCTCCTGCATGGTGGGTCTGGAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS GCA 72 bp | AGAAGGTCTGCCCTTGAGTGTAGTAGGTGGAGGACTTaGTGGGGTTGTAGCGGGTGTGTGTGGTGCAGGCCT | + |
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Preference number: 6 (lower is better) Translates to: RRSALECSRWRT*WGCSGCVWCRP Trigger: AGGCCTGCACCACACACACCCGCTACAACCCCAGCAAGTCCTCCACCTACTACACTCAAGGGCAGACCTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS CCA 72 bp | ACTGCAGGGAGAAGGTCTGCCCTTGAGTGTAGTAGGTaGAGGACTTGCTGGGGTTGTAGCGGGTGTGTGTGG | + |
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Preference number: 6 (lower is better) Translates to: TAGRRSALECSR*RTCWGCSGCVW Trigger: CCACACACACCCGCTACAACCCCAGCAAGTCCTCCACCTACTACACTCAAGGGCAGACCTTCTCCCTGCAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS GCA 72 bp | ACTCTTCATTTTCTTCAGGGGGACCCTGATCAAAGCTaGCTCCAGGAGTGGGAGGCAGAGCAAGGCGACCAC | + |
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Preference number: 6 (lower is better) Translates to: TLHFLQGDPDQS*LQEWEAEQGDH Trigger: GTGGTCGCCTTGCTCTGCCTCCCACTCCTGGAGGCAGCTTTGATCAGGGTCCCCCTGAAGAAAATGAAGAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024782.12 ENSMUST00000144955.2 |
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| CDS CCA 72 bp | TGGGCTCCTATGGTCTGCAGAAGTTCATTCAGGTACTaGGCAGGCATGACGAGCAGAGAGGTGCCTGTGTCT | + |
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Preference number: 6 (lower is better) Translates to: WAPMVCRSSFRY*AGMTSREVPVS Trigger: AGACACAGGCACCTCTCTGCTCGTCATGCCTGCCCAGTACCTGAATGAACTTCTGCAGACCATAGGAGCCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS TCA 72 bp | GCAGGAGCCTTCCTCCTGGATGATGTAGGAAGAGGGTaGCAGGGGGAACTGGACACCATTGAGGACAAAAGT | + |
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Preference number: 6 (lower is better) Translates to: AGAFLLDDVGRG*QGELDTIEDKS Trigger: ACTTTTGTCCTCAATGGTGTCCAGTTCCCCCTGTCACCCTCTTCCTACATCATCCAGGAGGAAGGCTCCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS GCA 72 bp | TACTGTCCATACTCTCCTTCCTGGGCTCCTATGGTCTaGAGAAGTTCATTCAGGTACTGGGCAGGCATGACG | + |
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Preference number: 6 (lower is better) Translates to: YCPYSPSWAPMV*RSSFRYWAGMT Trigger: CGTCATGCCTGCCCAGTACCTGAATGAACTTCTGCAGACCATAGGAGCCCAGGAAGGAGAGTATGGACAGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS TCA 72 bp | AAAGGACCAGGAAGTTCTGGGGTGGAGTCCCGATGCTaGTCTCACCATAGTAGGAAGCATCCATATAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: KGPGSSGVESRC*SHHSRKHPYRP Trigger: TGGCCTATATGGATGCTTCCTACTATGGTGAGATCAGCATCGGGACTCCACCCCAGAACTTCCTGGTCCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS TCA 72 bp | GGCCAGGGTCATACTTGTGGTTCTTCAGAAAGTCTTTaGGGACACCTTGTTCCTTCATGGTCTCCCGGATAC | + |
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Preference number: 6 (lower is better) Translates to: GQGHTCGSSESL*GHLVPSWSPGY Trigger: GTATCCGGGAGACCATGAAGGAACAAGGTGTCCTCAAAGACTTTCTGAAGAACCACAAGTATGACCCTGGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024782.12 ENSMUST00000144955.2 |
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| CDS CCA 72 bp | TCGCAGCTCACAAAATACTGTCCATACTCTCCTTCCTaGGCTCCTATGGTCTGCAGAAGTTCATTCAGGTAC | + |
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Preference number: 6 (lower is better) Translates to: SQLTKYCPYSPS*APMVCRSSFRY Trigger: GTACCTGAATGAACTTCTGCAGACCATAGGAGCCCAGGAAGGAGAGTATGGACAGTATTTTGTGAGCTGCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024782.12 |
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| CDS CAA 90 bp | GCCAGGGTCATACTTGTGGTTCTTCAGAAAGTCTTTGAGGACACCTaGTTCCTTCATGGTCTCCCGGATACTCTTCATTTTCTTCAGGGG | + |
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Preference number: 6 (lower is better) Translates to: ARVILVVLQKVFEDT*FLHGLPDTLHFLQG Trigger: CCCCTGAAGAAAATGAAGAGTATCCGGGAGACCATGAAGGAACAAGGTGTCCTCAAAGACTTTCTGAAGAACCACAAGTATGACCCTGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024782.12 ENSMUST00000144955.2 |
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| CDS GCA 72 bp | CCATGGGCTCATAGAGTACACTGTAGTCACCAAACTTaGCAAAGTGGTATTTCTGGCCAGGGTCATACTTGT | + |
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Preference number: 6 (lower is better) Translates to: PWAHRVHCSHQT*QSGISGQGHTC Trigger: ACAAGTATGACCCTGGCCAGAAATACCACTTTGGCAAGTTTGGTGACTACAGTGTACTCTATGAGCCCATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024782.12 ENSMUST00000144955.2 |
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| CDS CAA 90 bp | TGGTATTTCTGGCCAGGGTCATACTTGTGGTTCTTCAGAAAGTCTTaGAGGACACCTTGTTCCTTCATGGTCTCCCGGATACTCTTCATT | + |
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Preference number: 6 (lower is better) Translates to: WYFWPGSYLWFFRKS*RTPCSFMVSRILFI Trigger: AATGAAGAGTATCCGGGAGACCATGAAGGAACAAGGTGTCCTCAAAGACTTTCTGAAGAACCACAAGTATGACCCTGGCCAGAAATACCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024782.12 ENSMUST00000144955.2 |
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| CDS CCA 72 bp | TTGCCAAAGTGGTATTTCTGGCCAGGGTCATACTTGTaGTTCTTCAGAAAGTCTTTGAGGACACCTTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: LPKWYFWPGSYL*FFRKSLRTPCS Trigger: GGAACAAGGTGTCCTCAAAGACTTTCTGAAGAACCACAAGTATGACCCTGGCCAGAAATACCACTTTGGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024782.12 ENSMUST00000144955.2 |
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| CDS CAA 72 bp | AACTTGCCAAAGTGGTATTTCTGGCCAGGGTCATACTaGTGGTTCTTCAGAAAGTCTTTGAGGACACCTTGT | + |
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Preference number: 6 (lower is better) Translates to: NLPKWYFWPGSY*WFFRKSLRTPC Trigger: ACAAGGTGTCCTCAAAGACTTTCTGAAGAACCACAAGTATGACCCTGGCCAGAAATACCACTTTGGCAAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024782.12 ENSMUST00000144955.2 |
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