RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PGAP6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024180

Ensembl transcript IDs: ENSMUST00000025010.14, ENSMUST00000128597.3, ENSMUST00000235821.2, ENSMUST00000237058.2

Found 346 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGGACCACAGGAATCCCTTATCTGTATCCCCATCCATAACAGCGTaGTCAGCCCACACGTGGCACCTGTGGGCTCCAGGTGGAAACAGC +
Preference number: 1 (lower is better)
Translates to: GDHRNPLSVSPSITA*SAHTWHLWAPGGNS
Trigger: GCTGTTTCCACCTGGAGCCCACAGGTGCCACGTGTGGGCTGATCACGCTGTTATGGATGGGGATACAGATAAGGGATTCCTGTGGTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR TCA 90 bp ACAGTGGGAACCAAATGGCCTGGGCACACAGCACTACCAGCTCAGTaGCCCCAGGAGACCAGAAAGATTGGGCTGGGGATCCAGAACCCA +
Preference number: 1 (lower is better)
Translates to: TVGTKWPGHTALPAQ*PQETRKIGLGIQNP
Trigger: TGGGTTCTGGATCCCCAGCCCAATCTTTCTGGTCTCCTGGGGTCACTGAGCTGGTAGTGCTGTGTGCCCAGGCCATTTGGTTCCCACTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR GCA 90 bp GCCTTGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGCATTGTGTaGCTTCTGGAGCCAGACCTCATACAGCTGAGCAGCCTGCTACCT +
Preference number: 1 (lower is better)
Translates to: ALDPLREKGTLASIV*LLEPDLIQLSSLLP
Trigger: AGGTAGCAGGCTGCTCAGCTGTATGAGGTCTGGCTCCAGAAGGCACACAATGCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR CCA 90 bp CTCATCCAAGTGTCTAGGGCCAGCACAGGAGAATGCTCACCAGACTaGGGCCTTGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGCAT +
Preference number: 1 (lower is better)
Translates to: LIQVSRASTGECSPD*GLGPLKREGNTSEH
Trigger: ATGCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGCCCCAGTCTGGTGAGCATTCTCCTGTGCTGGCCCTAGACACTTGGATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR GCA 90 bp GGTCTTAATCAGCTCTCTGATGACCCTGGACTCTACCATAGCAACTaGAGCAGGAGGGTATCCCCATGCCAAGGCAGGATGGCATTAAGG +
Preference number: 1 (lower is better)
Translates to: GLNQLSDDPGLYHSN*SRRVSPCQGRMALR
Trigger: CCTTAATGCCATCCTGCCTTGGCATGGGGATACCCTCCTGCTGCAGTTGCTATGGTAGAGTCCAGGGTCATCAGAGAGCTGATTAAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR GCA 90 bp AGGATGTCAGAGACAGTGAGTGACCTCTGTGCACTCAGACTTCCTTaGTTGTGGGTCTCATATCACGGCTTTCCAAAGGAAGGGGACCAC +
Preference number: 1 (lower is better)
Translates to: RMSETVSDLCALRLP*LWVSYHGFPKEGDH
Trigger: GTGGTCCCCTTCCTTTGGAAAGCCGTGATATGAGACCCACAAGCAAGGAAGTCTGAGTGCACAGAGGTCACTCACTGTCTCTGACATCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR TCA 90 bp CAAGGCAGGATGGCATTAAGGGTACAGGATGTCAGAGACAGTGAGTaGCCTCTGTGCACTCAGACTTCCTTGCTTGTGGGTCTCATATCA +
Preference number: 1 (lower is better)
Translates to: QGRMALRVQDVRDSE*PLCTQTSLLVGLIS
Trigger: TGATATGAGACCCACAAGCAAGGAAGTCTGAGTGCACAGAGGTCACTCACTGTCTCTGACATCCTGTACCCTTAATGCCATCCTGCCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR-3UTR CCA 90 bp AGCAACTGCAGCAGGAGGGTATCCCCATGCCAAGGCAGGATGGCATTAAGGGTACACACGTGGCACCTGTaGGCTCCAGGTGGAAACAGC +
Preference number: 2 (lower is better)
Translates to: SNCSRRVSPCQGRMALRVHTWHL*APGGNS
Trigger: GCTGTTTCCACCTGGAGCCCACAGGTGCCACGTGTG...TACCCTTAATGCCATCCTGCCTTGGCATGGGGATACCCTCCTGCTGCAGTTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR CAA 90 bp AAGTGTCTAGGGCCAGCACAGGAGAATGCTCACCAGACTGGGGCCTaGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGCATTGTGTGC +
Preference number: 2 (lower is better)
Translates to: KCLGPAQENAHQTGA*DPLREKGTLASIVC
Trigger: GCACACAATGCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGCCCCAGTCTGGTGAGCATTCTCCTGTGCTGGCCCTAGACACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR-3UTR CCA 90 bp TACCATAGCAACTGCAGCAGGAGGGTATCCCCATGCCAAGGCAGGATGGCATTAGGAGGGGGTCTTCTCTaGAGAAAGAAGCCAAGCGTC +
Preference number: 2 (lower is better)
Translates to: YHSNCSRRVSPCQGRMALGGGLL*RKKPSV
Trigger: GACGCTTGGCTTCTTTCTCCAGAGAAGACCCCCTCC...TAATGCCATCCTGCCTTGGCATGGGGATACCCTCCTGCTGCAGTTGCTATGGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR-3UTR TCA 90 bp GGCCTTGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGCATTGTGTGCCTTCTAGGTGGAAACAGCTGTaGCCTTCAGAGGAATTGGCA +
Preference number: 2 (lower is better)
Translates to: GLGPLKREGNTSEHCVPSRWKQL*PSEELA
Trigger: TGCCAATTCCTCTGAAGGTCACAGCTGTTTCCACCT...AGAAGGCACACAATGCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR-3UTR TCA 90 bp AGGAGACCAGAAAGATTGGGCTGGGGATCCAGAACCCACTCCTTAATCCTCAGTGGATGTCAGAGACAGTaGGTGACCTCTGTGCACTCA +
Preference number: 2 (lower is better)
Translates to: RRPERLGWGSRTHSLILSGCQRQ*VTSVHS
Trigger: TGAGTGCACAGAGGTCACTCACTGTCTCTGACATCC...ACTGAGGATTAAGGAGTGGGTTCTGGATCCCCAGCCCAATCTTTCTGGTCTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR-3UTR CCA 90 bp ATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACAGGCCCAGGACCCAGCTTTTTCCTCTCGTaGTGGCAGAAGAAATGCTGC +
Preference number: 2 (lower is better)
Translates to: IPADLVVTRELLQTGPGPSFFLS*WQKKCC
Trigger: GCAGCATTTCTTCTGCCACCACGAGAGGAAAAAGCT...GGGTCCTGGGCCTGTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
3UTR-3UTR GCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTACATCCCGATCATTCCTaGAGATCTGGTAGTGACAAG +
Preference number: 2 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALHPDHS*RSGSDK
Trigger: CTTGTCACTACCAGATCTGCAGGAATGATCGGGATG...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
3UTR TCA 72 bp GCATTGTGTGCCTTCTGGAGCCAGACCTCATACAGCTaGGCAGCCTGCTACCTCAGGCTCTCCCGAAGGCCT +
Preference number: 3 (lower is better)
Translates to: ALCAFWSQTSYS*AACYLRLSRRP
Trigger: AGGCCTTCGGGAGAGCCTGAGGTAGCAGGCTGCTCAGCTGTATGAGGTCTGGCTCCAGAAGGCACACAATGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR TCA 72 bp ACCAAATGGCCTGGGCACACAGCACTACCAGCTCAGTaGCCCCAGGAGACCAGAAAGATTGGGCTGGGGATC +
Preference number: 3 (lower is better)
Translates to: TKWPGHTALPAQ*PQETRKIGLGI
Trigger: GATCCCCAGCCCAATCTTTCTGGTCTCCTGGGGTCACTGAGCTGGTAGTGCTGTGTGCCCAGGCCATTTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR CCA 72 bp AGAGCAGATGAGCCTCACAGTGGGAACCAAATGGCCTaGGCACACAGCACTACCAGCTCAGTGACCCCAGGA +
Preference number: 3 (lower is better)
Translates to: RADEPHSGNQMA*AHSTTSSVTPG
Trigger: TCCTGGGGTCACTGAGCTGGTAGTGCTGTGTGCCCAGGCCATTTGGTTCCCACTGTGAGGCTCATCTGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR GCA 72 bp CAGCTCTCTGATGACCCTGGACTCTACCATAGCAACTaGAGCAGGAGGGTATCCCCATGCCAAGGCAGGATG +
Preference number: 3 (lower is better)
Translates to: QLSDDPGLYHSN*SRRVSPCQGRM
Trigger: CATCCTGCCTTGGCATGGGGATACCCTCCTGCTGCAGTTGCTATGGTAGAGTCCAGGGTCATCAGAGAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR GCA 72 bp AGCCTCATCCAAGTGTCTAGGGCCAGCACAGGAGAATaGTCACCAGACTGGGGCCTTGGACCCCTTAAGAGA +
Preference number: 3 (lower is better)
Translates to: SLIQVSRASTGE*SPDWGLGPLKR
Trigger: TCTCTTAAGGGGTCCAAGGCCCCAGTCTGGTGAGCATTCTCCTGTGCTGGCCCTAGACACTTGGATGAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR TCA 72 bp AGGAATCCCTTATCTGTATCCCCATCCATAACAGCGTaGTCAGCCCACACGTGGCACCTGTGGGCTCCAGGT +
Preference number: 3 (lower is better)
Translates to: RNPLSVSPSITA*SAHTWHLWAPG
Trigger: ACCTGGAGCCCACAGGTGCCACGTGTGGGCTGATCACGCTGTTATGGATGGGGATACAGATAAGGGATTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR-3UTR CAA 90 bp GACTGGGGCCTTGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGCATTGTGTGCTCAGACTTCCTTGCTaGTGGGTCTCATATCACGGC +
Preference number: 3 (lower is better)
Translates to: DWGLGPLKREGNTSEHCVLRLPC*WVSYHG
Trigger: GCCGTGATATGAGACCCACAAGCAAGGAAGTCTGAG...CACACAATGCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGCCCCAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR GCA 72 bp CTCTACCATAGCAACTGCAGCAGGAGGGTATCCCCATaGCAAGGCAGGATGGCATTAAGGGTACAGGATGTC +
Preference number: 3 (lower is better)
Translates to: LYHSNCSRRVSP*QGRMALRVQDV
Trigger: GACATCCTGTACCCTTAATGCCATCCTGCCTTGGCATGGGGATACCCTCCTGCTGCAGTTGCTATGGTAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR TCA 72 bp ATGGCATTAAGGGTACAGGATGTCAGAGACAGTGAGTaGCCTCTGTGCACTCAGACTTCCTTGCTTGTGGGT +
Preference number: 3 (lower is better)
Translates to: MALRVQDVRDSE*PLCTQTSLLVG
Trigger: ACCCACAAGCAAGGAAGTCTGAGTGCACAGAGGTCACTCACTGTCTCTGACATCCTGTACCCTTAATGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR TCA 72 bp CAGGATGGCATTAAGGGTACAGGATGTCAGAGACAGTaGGTGACCTCTGTGCACTCAGACTTCCTTGCTTGT +
Preference number: 3 (lower is better)
Translates to: QDGIKGTGCQRQ*VTSVHSDFLAC
Trigger: ACAAGCAAGGAAGTCTGAGTGCACAGAGGTCACTCACTGTCTCTGACATCCTGTACCCTTAATGCCATCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR GCA 72 bp ATCAGGTCACTGTGTACAACTCATCCCGATCATTCCTaGAGATCTGGTAGTGACAAGGGAACTTCTGCAAAC +
Preference number: 3 (lower is better)
Translates to: IRSLCTTHPDHS*RSGSDKGTSAN
Trigger: GTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGGGATGAGTTGTACACAGTGACCTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR TCA 90 bp GTCAGCCTCATCCAAGTGTCTAGGGCCAGCACAGGAGAATGCTCACCAGACTGGCAGCAGCAGCAGCAGTaGCCCGGTCGCTGCCTCCCG +
Preference number: 4 (lower is better)
Translates to: VSLIQVSRASTGECSPDWQQQQQ*PGRCLP
Trigger: CGGGAGGCAGCGACCGGGTCACTGCTGCTGCTGCTG...CCAGTCTGGTGAGCATTCTCCTGTGCTGGCCCTAGACACTTGGATGAGGCTGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp GTCAGCCTCATCCAAGTGTCTAGGGCCAGCACAGGAGAATGCTCACCAGACTGGTCTCCTTGCTGTTGCTaGCGGCGGCAGGCGGAGGCC +
Preference number: 4 (lower is better)
Translates to: VSLIQVSRASTGECSPDWSPCCC*RRQAEA
Trigger: GGCCTCCGCCTGCCGCCGCCAGCAACAGCAAGGAGA...CCAGTCTGGTGAGCATTCTCCTGTGCTGGCCCTAGACACTTGGATGAGGCTGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp TACCAGCTCAGTGACCCCAGGAGACCAGAAAGATTGGGCTGGGGATCCAGAACCGGCCACTGTCCACCCTaGTACTCCTGCCCAGGTCCC +
Preference number: 4 (lower is better)
Translates to: YQLSDPRRPERLGWGSRTGHCPP*YSCPGP
Trigger: GGGACCTGGGCAGGAGTAGCAGGGTGGACAGTGGCC...GGTTCTGGATCCCCAGCCCAATCTTTCTGGTCTCCTGGGGTCACTGAGCTGGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp TACCAGCTCAGTGACCCCAGGAGACCAGAAAGATTGGGCTGGGGATCCAGAACCAGCGCTGCTGCCCTCTaGTGGGCTACGGTCTGCGCT +
Preference number: 4 (lower is better)
Translates to: YQLSDPRRPERLGWGSRTSAAAL*WATVCA
Trigger: AGCGCAGACCGTAGCCCAGCAGAGGGCAGCAGCGCT...GGTTCTGGATCCCCAGCCCAATCTTTCTGGTCTCCTGGGGTCACTGAGCTGGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
3UTR CAA 72 bp GGGCCAGCACAGGAGAATGCTCACCAGACTGGGGCCTaGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGC +
Preference number: 4 (lower is better)
Translates to: GPAQENAHQTGA*DPLREKGTLAS
Trigger: GCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGCCCCAGTCTGGTGAGCATTCTCCTGTGCTGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR TCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCCAGCAGCAGCAGCAGTaGCCCGGTCGCTGCCTCCCG +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPAQQQQQ*PGRCLP
Trigger: CGGGAGGCAGCGACCGGGTCACTGCTGCTGCTGCTG...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp AGTGACAAGGGAACTTCTGCAAACAGGCCCAGGACCCAGCTTTTTCCTCTCGTGGGCCACTGTCCACCCTaGTACTCCTGCCCAGGTCCC +
Preference number: 4 (lower is better)
Translates to: SDKGTSANRPRTQLFPLVGHCPP*YSCPGP
Trigger: GGGACCTGGGCAGGAGTAGCAGGGTGGACAGTGGCC...CACGAGAGGAAAAAGCTGGGTCCTGGGCCTGTTTGCAGAAGTTCCCTTGTCACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp AGGGAACTTCTGCAAACAGGCCCAGGACCCAGCTTTTTCCTCTCGTGGTGGCAGTGCTGGGCTACGGTCTaGGCTGTGCTGTTGTCGGTG +
Preference number: 4 (lower is better)
Translates to: RELLQTGPGPSFFLSWWQCWATV*AVLLSV
Trigger: CACCGACAACAGCACAGCGCAGACCGTAGCCCAGCA...CTGCCACCACGAGAGGAAAAAGCTGGGTCCTGGGCCTGTTTGCAGAAGTTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR TCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACAGCAGCAGCAGCAGTaGCCCGGTCGCTGCCTCCCG +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHEQQQQQ*PGRCLP
Trigger: CGGGAGGCAGCGACCGGGTCACTGCTGCTGCTGCTG...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CACTACCAGCTCAGTGACCCCAGGAGACCAGAAAGATTGGGCTGGGGATCCAGAGGAAGAGCCGGGTGCTaGCATACCAGCTGTAGAAGG +
Preference number: 4 (lower is better)
Translates to: HYQLSDPRRPERLGWGSRGRAGC*HTSCRR
Trigger: CCTTCTACAGCTGGTATGGCAGCACCCGGCTCTTCC...TCTGGATCCCCAGCCCAATCTTTCTGGTCTCCTGGGGTCACTGAGCTGGTAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp AGGAGACCAGAAAGATTGGGCTGGGGATCCAGAACCCACTCCTTAATCCTCAGTCCACCCTGCTACTCCTaGCCAGGTCCCGGTGGACAG +
Preference number: 4 (lower is better)
Translates to: RRPERLGWGSRTHSLILSPPCYS*PGPGGQ
Trigger: CTGTCCACCGGGACCTGGGCAGGAGTAGCAGGGTGG...ACTGAGGATTAAGGAGTGGGTTCTGGATCCCCAGCCCAATCTTTCTGGTCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp CATCCCGATCATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACAGGGGGGGCACGCGGAAGTaGAAGAGCCGGGTGCTGCCA +
Preference number: 4 (lower is better)
Translates to: HPDHSCRSGSDKGTSANRGGTRK*KSRVLP
Trigger: TGGCAGCACCCGGCTCTTCCACTTCCGCGTGCCCCC...CCTGTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGGGATG
58% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp GGGGCCTTGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGCATTGTGTGCCTTGAATGGTCACCCAGGTaGACGCCCCAGAGCCCAGAA +
Preference number: 4 (lower is better)
Translates to: GALDPLREKGTLASIVCLEWSPR*TPQSPE
Trigger: TTCTGGGCTCTGGGGCGTCCACCTGGGTGACCATTC...AAGGCACACAATGCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp ACCTGTGGGCTCCAGGTGGAAACAGCTGTGACCTTCAGAGGAATTGGCAGCAGCTGCCAACGGAAGCCATaGAGATGCCAGGCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: TCGLQVETAVTFRGIGSSCQRKP*RCQAGG
Trigger: ACCTCCTGCCTGGCATCTCCATGGCTTCCGTTGGCA...GCTGCTGCCAATTCCTCTGAAGGTCACAGCTGTTTCCACCTGGAGCCCACAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR TCA 90 bp TACCAGCTCAGTGACCCCAGGAGACCAGAAAGATTGGGCTGGGGATCCAGAACCCAGGGTGGGAGATGTTaGCTGAGGTGTTGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: YQLSDPRRPERLGWGSRTQGGRC*LRCCPA
Trigger: TGCTGGACAACACCTCAGTCAACATCTCCCACCCTG...GGTTCTGGATCCCCAGCCCAATCTTTCTGGTCTCCTGGGGTCACTGAGCTGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCCTTCCCTGGGACACGTaGAGCAGCCAGCGGAGCAGC +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPALPWDT*SSQRSS
Trigger: GCTGCTCCGCTGGCTGCTGCACGTGTCCCAGGGAAG...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATCCACCCTGCTACTCCTaGCCAGGTCCCGGTGGACAG +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHPPCYS*PGPGGQ
Trigger: CTGTCCACCGGGACCTGGGCAGGAGTAGCAGGGTGG...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCGGCCACTGTCCACCCTaGTACTCCTGCCCAGGTCCC +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPAGHCPP*YSCPGP
Trigger: GGGACCTGGGCAGGAGTAGCAGGGTGGACAGTGGCC...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp ACTTCTGCAAACAGGCCCAGGACCCAGCTTTTTCCTCTCGTGGTGGCAGAAGAACTGTGCTGTTGTCGGTaGAGCTCCACCCACGCCAAC +
Preference number: 4 (lower is better)
Translates to: TSANRPRTQLFPLVVAEELCCCR*SSTHAN
Trigger: GTTGGCGTGGGTGGAGCTGCACCGACAACAGCACAG...TTCTTCTGCCACCACGAGAGGAAAAAGCTGGGTCCTGGGCCTGTTTGCAGAAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp TACCATAGCAACTGCAGCAGGAGGGTATCCCCATGCCAAGGCAGGATGGCATTACTACGGTCTGCGCTGTaGTGTTGTCGGTGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: YHSNCSRRVSPCQGRMALLRSAL*CCRCSS
Trigger: GGAGCTGCACCGACAACAGCACAGCGCAGACCGTAG...TAATGCCATCCTGCCTTGGCATGGGGATACCCTCCTGCTGCAGTTGCTATGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCATCTCCTTGCTGTTGCTaGCGGCGGCAGGCGGAGGCC +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPSPCCC*RRQAEA
Trigger: GGCCTCCGCCTGCCGCCGCCAGCAACAGCAAGGAGA...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp ACTCATCCCGATCATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACTCTCCTTGCTGTTGCTaGCGGCGGCAGGCGGAGGCC +
Preference number: 4 (lower is better)
Translates to: THPDHSCRSGSDKGTSANSPCCC*RRQAEA
Trigger: GGCCTCCGCCTGCCGCCGCCAGCAACAGCAAGGAGA...GTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGGGATGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAAGGGGGCACGCGGAAGTaGAAGAGCCGGGTGCTGCCA +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHEGGTRK*KSRVLP
Trigger: TGGCAGCACCCGGCTCTTCCACTTCCGCGTGCCCCC...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR TCA 90 bp CACTACCAGCTCAGTGACCCCAGGAGACCAGAAAGATTGGGCTGGGGATCCAGACAGGGACAAAGATCTTaGGGTAGCTGGGGTAGGAGA +
Preference number: 4 (lower is better)
Translates to: HYQLSDPRRPERLGWGSRQGQRS*GSWGRR
Trigger: TCTCCTACCCCAGCTACCTCAAGATCTTTGTCCCTG...TCTGGATCCCCAGCCCAATCTTTCTGGTCTCCTGGGGTCACTGAGCTGGTAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCACTTCCCTGGGACACGTaGAGCAGCCAGCGGAGCAGC +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPLPWDT*SSQRSS
Trigger: GCTGCTCCGCTGGCTGCTGCACGTGTCCCAGGGAAG...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACTTCCCTGGGACACGTaGAGCAGCCAGCGGAGCAGC +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHELPWDT*SSQRSS
Trigger: GCTGCTCCGCTGGCTGCTGCACGTGTCCCAGGGAAG...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCACCACCCTGCTACTCCTaGCCAGGTCCCGGTGGACAG +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPPPCYS*PGPGGQ
Trigger: CTGTCCACCGGGACCTGGGCAGGAGTAGCAGGGTGG...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAAGGCCACTGTCCACCCTaGTACTCCTGCCCAGGTCCC +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHEGHCPP*YSCPGP
Trigger: GGGACCTGGGCAGGAGTAGCAGGGTGGACAGTGGCC...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAAAGCGCTGCTGCCCTCTaGTGGGCTACGGTCTGCGCT +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHESAAAL*WATVCA
Trigger: AGCGCAGACCGTAGCCCAGCAGAGGGCAGCAGCGCT...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp GGTGTCCATGAACCAGCCTTATCAGGTCACTGTGTACAACTCATCCCGATCATTAGCGCTGCTGCCCTCTaGTGGGCTACGGTCTGCGCT +
Preference number: 4 (lower is better)
Translates to: GVHEPALSGHCVQLIPIISAAAL*WATVCA
Trigger: AGCGCAGACCGTAGCCCAGCAGAGGGCAGCAGCGCT...AATGATCGGGATGAGTTGTACACAGTGACCTGATAAGGCTGGTTCATGGACACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp ACTGGGGCCTTGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGCATTGTGTGCGAAGGACAGCTTCTGTaGGGCCTGGGAGAAGTGTTC +
Preference number: 4 (lower is better)
Translates to: TGALDPLREKGTLASIVCEGQLL*GLGEVF
Trigger: GAACACTTCTCCCAGGCCCCACAGAAGCTGTCCTTC...GCACACAATGCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGCCCCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTAGGGGGCACGCGGAAGTaGAAGAGCCGGGTGCTGCCA +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALGGTRK*KSRVLP
Trigger: TGGCAGCACCCGGCTCTTCCACTTCCGCGTGCCCCC...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACAGGCCCAGGACCCAGCACAAAGCCCTTCACCTaGATCTTCTGGGAGGAGGGA +
Preference number: 4 (lower is better)
Translates to: PADLVVTRELLQTGPGPSTKPFT*IFWEEG
Trigger: TCCCTCCTCCCAGAAGATCCAGGTGAAGGGCTTTGT...GCTGGGTCCTGGGCCTGTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp AGGAGACCAGAAAGATTGGGCTGGGGATCCAGAACCCACTCCTTAATCCTCAGTAGCCGGGGCTCACACTaGACACACAGCCCTGCAGTT +
Preference number: 4 (lower is better)
Translates to: RRPERLGWGSRTHSLILSSRGSH*THSPAV
Trigger: AACTGCAGGGCTGTGTGTCCAGTGTGAGCCCCGGCT...ACTGAGGATTAAGGAGTGGGTTCTGGATCCCCAGCCCAATCTTTCTGGTCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR TCA 90 bp AGCAACTGCAGCAGGAGGGTATCCCCATGCCAAGGCAGGATGGCATTAAGGGTAGTTGGCCATGTGAGATaGGGCTCTCAGAAACATGGG +
Preference number: 4 (lower is better)
Translates to: SNCSRRVSPCQGRMALRVVGHVR*GSQKHG
Trigger: CCCATGTTTCTGAGAGCCTCATCTCACATGGCCAAC...TACCCTTAATGCCATCCTGCCTTGGCATGGGGATACCCTCCTGCTGCAGTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp CCGATCATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACAGGCCCAGGAAGAGCCGGGTGCTaGCATACCAGCTGTAGAAGG +
Preference number: 4 (lower is better)
Translates to: PIIPADLVVTRELLQTGPGRAGC*HTSCRR
Trigger: CCTTCTACAGCTGGTATGGCAGCACCCGGCTCTTCC...TGGGCCTGTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp AGGGGGTCTTCTCTGGAGAAAGAAGCCAAGCGTCTCAGGACAATTTTATTCAGACTTCCCTGGGACACGTaGAGCAGCCAGCGGAGCAGC +
Preference number: 4 (lower is better)
Translates to: RGSSLEKEAKRLRTILFRLPWDT*SSQRSS
Trigger: GCTGCTCCGCTGGCTGCTGCACGTGTCCCAGGGAAG...TCTGAATAAAATTGTCCTGAGACGCTTGGCTTCTTTCTCCAGAGAAGACCCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp CTGGAGCCAGACCTCATACAGCTGAGCAGCCTGCTACCTCAGGCTCTCCCGAAGGCATTACAGAAGGCATaGTTGAATGCACTAGCACGA +
Preference number: 4 (lower is better)
Translates to: LEPDLIQLSSLLPQALPKALQKA*LNALAR
Trigger: TCGTGCTAGTGCATTCAAGCATGCCTTCTGTAATGC...CTTCGGGAGAGCCTGAGGTAGCAGGCTGCTCAGCTGTATGAGGTCTGGCTCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp TGCAAACAGGCCCAGGACCCAGCTTTTTCCTCTCGTGGTGGCAGAAGAAATGCTTCAGGGCACACAAGCTaGAGGGAGAGGTACCAGTTG +
Preference number: 4 (lower is better)
Translates to: CKQAQDPAFSSRGGRRNASGHTS*RERYQL
Trigger: CAACTGGTACCTCTCCCTGCAGCTTGTGTGCCCTGA...AGCATTTCTTCTGCCACCACGAGAGGAAAAAGCTGGGTCCTGGGCCTGTTTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATCACGCCAACCTGCCTTaGAGCTGCAGCCTGCGTACA +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHHANLP*SCSLRT
Trigger: TGTACGCAGGCTGCAGCTGCAAGGCAGGTTGGCGTG...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCCTGTGCTGTTGTCGGTaGAGCTCCACCCACGCCAAC +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPALCCCR*SSTHAN
Trigger: GTTGGCGTGGGTGGAGCTGCACCGACAACAGCACAG...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCCTACGGTCTGCGCTGTaGTGTTGTCGGTGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPALRSAL*CCRCSS
Trigger: GGAGCTGCACCGACAACAGCACAGCGCAGACCGTAG...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATTGCTGGGCTACGGTCTaGGCTGTGCTGTTGTCGGTG +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHCWATV*AVLLSV
Trigger: CACCGACAACAGCACAGCGCAGACCGTAGCCCAGCA...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTAAGCGCTGCTGCCCTCTaGTGGGCTACGGTCTGCGCT +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALSAAAL*WATVCA
Trigger: AGCGCAGACCGTAGCCCAGCAGAGGGCAGCAGCGCT...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCACGTGAGCAGAAGCGCTaGTGCCCTCTGCTGGGCTAC +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPREQKR*CPLLGY
Trigger: GTAGCCCAGCAGAGGGCAGCAGCGCTTCTGCTCACG...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACGTGAGCAGAAGCGCTaGTGCCCTCTGCTGGGCTAC +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHEREQKR*CPLLGY
Trigger: GTAGCCCAGCAGAGGGCAGCAGCGCTTCTGCTCACG...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp ACTCATCCCGATCATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACCGTGAGCAGAAGCGCTaGTGCCCTCTGCTGGGCTAC +
Preference number: 4 (lower is better)
Translates to: THPDHSCRSGSDKGTSANREQKR*CPLLGY
Trigger: GTAGCCCAGCAGAGGGCAGCAGCGCTTCTGCTCACG...GTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGGGATGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp AGCAACTGCAGCAGGAGGGTATCCCCATGCCAAGGCAGGATGGCATTAAGGGTAAGTTCCAGATGCCCCTaGGATCCATCTGCAAGGACA +
Preference number: 4 (lower is better)
Translates to: SNCSRRVSPCQGRMALRVSSRCP*DPSART
Trigger: TGTCCTTGCAGATGGATCGCAGGGGCATCTGGAACT...TACCCTTAATGCCATCCTGCCTTGGCATGGGGATACCCTCCTGCTGCAGTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp GGTCTTCTCTGGAGAAAGAAGCCAAGCGTCTCAGGACAATTTTATTCAGATGGAGGGGGCACGCGGAAGTaGAAGAGCCGGGTGCTGCCA +
Preference number: 4 (lower is better)
Translates to: GLLWRKKPSVSGQFYSDGGGTRK*KSRVLP
Trigger: TGGCAGCACCCGGCTCTTCCACTTCCGCGTGCCCCC...TCCATCTGAATAAAATTGTCCTGAGACGCTTGGCTTCTTTCTCCAGAGAAGACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp CCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACAGGCCCAGGACCCAGCTCCAACCGAAGCTCCTaGGTGTATTCAGGGACAAAG +
Preference number: 4 (lower is better)
Translates to: PADLVVTRELLQTGPGPSSNRSS*VYSGTK
Trigger: CTTTGTCCCTGAATACACCCAGGAGCTTCGGTTGGA...GCTGGGTCCTGGGCCTGTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp ACTGGGGCCTTGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGCATTGTGTGCCAAGTCAGCACCCTCTaGAAGTTTCTAGGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: TGALDPLREKGTLASIVCQVSTL*KFLGRV
Trigger: CACCCTGCCTAGAAACTTCCAGAGGGTGCTGACTTG...GCACACAATGCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGCCCCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp ACTTCTGCAAACAGGCCCAGGACCCAGCTTTTTCCTCTCGTGGTGGCAGAAGAAGAGGACAGTAGCAAATaGCAGGATGGAGCGAGGCCA +
Preference number: 4 (lower is better)
Translates to: TSANRPRTQLFPLVVAEEEDSSK*QDGARP
Trigger: TGGCCTCGCTCCATCCTGCCATTTGCTACTGTCCTC...TTCTTCTGCCACCACGAGAGGAAAAAGCTGGGTCCTGGGCCTGTTTGCAGAAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAATGGTCACCCAGGTaGACGCCCCAGAGCCCAGAA +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHEWSPR*TPQSPE
Trigger: TTCTGGGCTCTGGGGCGTCCACCTGGGTGACCATTC...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS-3UTR TCA 90 bp ACTGGGGCCTTGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGCATTGTGTGCGTAGCGTGTCATAACTaGGGATGCACAACACTGCCT +
Preference number: 4 (lower is better)
Translates to: TGALDPLREKGTLASIVCVACHN*GCTTLP
Trigger: AGGCAGTGTTGTGCATCCTCAGTTATGACACGCTAC...GCACACAATGCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGCCCCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCGGAAGAGCCGGGTGCTaGCATACCAGCTGTAGAAGG +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPAGRAGC*HTSCRR
Trigger: CCTTCTACAGCTGGTATGGCAGCACCCGGCTCTTCC...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATCTGGACACACAGCCCTaGAGTTCCAACCGAAGCTCC +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHLDTQP*SSNRSS
Trigger: GGAGCTTCGGTTGGAACTGCAGGGCTGTGTGTCCAG...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACACGCCAACCTGCCTTaGAGCTGCAGCCTGCGTACA +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHEHANLP*SCSLRT
Trigger: TGTACGCAGGCTGCAGCTGCAAGGCAGGTTGGCGTG...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACTGTGCTGTTGTCGGTaGAGCTCCACCCACGCCAAC +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHELCCCR*SSTHAN
Trigger: GTTGGCGTGGGTGGAGCTGCACCGACAACAGCACAG...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCACTACGGTCTGCGCTGTaGTGTTGTCGGTGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPLRSAL*CCRCSS
Trigger: GGAGCTGCACCGACAACAGCACAGCGCAGACCGTAG...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAATGCTGGGCTACGGTCTaGGCTGTGCTGTTGTCGGTG +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHECWATV*AVLLSV
Trigger: CACCGACAACAGCACAGCGCAGACCGTAGCCCAGCA...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTACGTGAGCAGAAGCGCTaGTGCCCTCTGCTGGGCTAC +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALREQKR*CPLLGY
Trigger: GTAGCCCAGCAGAGGGCAGCAGCGCTTCTGCTCACG...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp TCCCCATGCCAAGGCAGGATGGCATTAAGGGTACAGGATGTCAGAGACAGTGAGACCAGGAAGGAACGGTaGAGGGATATAGCAATGGGG +
Preference number: 4 (lower is better)
Translates to: SPCQGRMALRVQDVRDSETRKER*RDIAMG
Trigger: CCCCATTGCTATATCCCTGCACCGTTCCTTCCTGGT...CTCACTGTCTCTGACATCCTGTACCCTTAATGCCATCCTGCCTTGGCATGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAGGATGCACAACACTaGCTCCCCGGGTTGGTCACA +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHEDAQH*LPGLVT
Trigger: TGTGACCAACCCGGGGAGGCAGTGTTGTGCATCCTC...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS-3UTR GCA 90 bp TGGGGTGGAGGGGGTCTTCTCTGGAGAAAGAAGCCAAGCGTCTCAGGACAATTTTCTTCAGACGGGCCATaGAAAGAATGGTCACCCAGG +
Preference number: 4 (lower is better)
Translates to: WGGGGLLWRKKPSVSGQFSSDGP*KEWSPR
Trigger: CCTGGGTGACCATTCTTTGCATGGCCCGTCTGAAGA...AAATTGTCCTGAGACGCTTGGCTTCTTTCTCCAGAGAAGACCCCCTCCACCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATCCCCTGCGATCCATCTaGAAGGACATGGCGATGACG +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHPLRSI*KDMAMT
Trigger: CGTCATCGCCATGTCCTTGCAGATGGATCGCAGGGG...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCCCCCTGCGATCCATCTaGAAGGACATGGCGATGACG +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPAPLRSI*KDMAMT
Trigger: CGTCATCGCCATGTCCTTGCAGATGGATCGCAGGGG...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
53% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp TCCTTGCTTGTGGGTCTCATATCACGGCTTTCCAAAGGAAGGGGACCACAGGAACGGAAGCCATGGAGATaGCAGGCAGGAGGTAGAAGA +
Preference number: 4 (lower is better)
Translates to: SLLVGLISRLSKGRGPQERKPWR*QAGGRR
Trigger: TCTTCTACCTCCTGCCTGGCATCTCCATGGCTTCCG...TTCCTGTGGTCCCCTTCCTTTGGAAAGCCGTGATATGAGACCCACAAGCAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp GGCCTTGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGCATTGTGTGCCTTCTACAAAGCCCTTCACCTaGATCTTCTGGGAGGAGGGA +
Preference number: 4 (lower is better)
Translates to: GLGPLKREGNTSEHCVPSTKPFT*IFWEEG
Trigger: TCCCTCCTCCCAGAAGATCCAGGTGAAGGGCTTTGT...AGAAGGCACACAATGCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAAAGCCGGGGCTCACACTaGACACACAGCCCTGCAGTT +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHESRGSH*THSPAV
Trigger: AACTGCAGGGCTGTGTGTCCAGTGTGAGCCCCGGCT...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAAGCCGGGGCTCACACTaGACACACAGCCCTGCAGTT +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPSRGSH*THSPAV
Trigger: AACTGCAGGGCTGTGTGTCCAGTGTGAGCCCCGGCT...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CTGGAGCCAGACCTCATACAGCTGAGCAGCCTGCTACCTCAGGCTCTCCCGAAGACGTGGAGAAGAACATaGTGTAAAAGTAGACAGAGG +
Preference number: 4 (lower is better)
Translates to: LEPDLIQLSSLLPQALPKTWRRT*CKSRQR
Trigger: CCTCTGTCTACTTTTACACCATGTTCTTCTCCACGT...CTTCGGGAGAGCCTGAGGTAGCAGGCTGCTCAGCTGTATGAGGTCTGGCTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTGCCAACGGAAGCCATaGAGATGCCAGGCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPACQRKP*RCQAGG
Trigger: ACCTCCTGCCTGGCATCTCCATGGCTTCCGTTGGCA...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS-3UTR TCA 90 bp CCGATCATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACAGGCCCACAGGGACAAAGATCTTaGGGTAGCTGGGGTAGGAGA +
Preference number: 4 (lower is better)
Translates to: PIIPADLVVTRELLQTGPQGQRS*GSWGRR
Trigger: TCTCCTACCCCAGCTACCTCAAGATCTTTGTCCCTG...TGGGCCTGTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR TCA 90 bp CCGATCATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACAGGCCCAGTTGGCCATGTGAGATaGGGCTCTCAGAAACATGGG +
Preference number: 4 (lower is better)
Translates to: PIIPADLVVTRELLQTGPVGHVR*GSQKHG
Trigger: CCCATGTTTCTGAGAGCCTCATCTCACATGGCCAAC...TGGGCCTGTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGGAAGAGCCGGGTGCTaGCATACCAGCTGTAGAAGG +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPGRAGC*HTSCRR
Trigger: CCTTCTACAGCTGGTATGGCAGCACCCGGCTCTTCC...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp GGCCTTGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGCATTGTGTGCCTTCTCAAGGTGCTCAACAATaGCCTGATATGGAAGGAGGC +
Preference number: 4 (lower is better)
Translates to: GLGPLKREGNTSEHCVPSQGAQQ*PDMEGG
Trigger: GCCTCCTTCCATATCAGGGCATTGTTGAGCACCTTG...AGAAGGCACACAATGCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACTGGACACACAGCCCTaGAGTTCCAACCGAAGCTCC +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHELDTQP*SSNRSS
Trigger: GGAGCTTCGGTTGGAACTGCAGGGCTGTGTGTCCAG...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp ACTCATCCCGATCATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACCTGGACACACAGCCCTaGAGTTCCAACCGAAGCTCC +
Preference number: 4 (lower is better)
Translates to: THPDHSCRSGSDKGTSANLDTQP*SSNRSS
Trigger: GGAGCTTCGGTTGGAACTGCAGGGCTGTGTGTCCAG...GTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGGGATGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAATCTAGGCAGGGTGGTTaGCCCCACTGTGACACGTAC +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHESRQGG*PHCDTY
Trigger: GTACGTGTCACAGTGGGGGCAACCACCCTGCCTAGA...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp ACTCATCCCGATCATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACTCTAGGCAGGGTGGTTaGCCCCACTGTGACACGTAC +
Preference number: 4 (lower is better)
Translates to: THPDHSCRSGSDKGTSANSRQGG*PHCDTY
Trigger: GTACGTGTCACAGTGGGGGCAACCACCCTGCCTAGA...GTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGGGATGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp AGGGAACTTCTGCAAACAGGCCCAGGACCCAGCTTTTTCCTCTCGTGGTGGCAGGCATTACAGAAGGCATaGTTGAATGCACTAGCACGA +
Preference number: 4 (lower is better)
Translates to: RELLQTGPGPSFFLSWWQALQKA*LNALAR
Trigger: TCGTGCTAGTGCATTCAAGCATGCCTTCTGTAATGC...CTGCCACCACGAGAGGAAAAAGCTGGGTCCTGGGCCTGTTTGCAGAAGTTCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTACACGCCAACCTGCCTTaGAGCTGCAGCCTGCGTACA +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALHANLP*SCSLRT
Trigger: TGTACGCAGGCTGCAGCTGCAAGGCAGGTTGGCGTG...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTACTGTGCTGTTGTCGGTaGAGCTCCACCCACGCCAAC +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALLCCCR*SSTHAN
Trigger: GTTGGCGTGGGTGGAGCTGCACCGACAACAGCACAG...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp AGGGGGTCTTCTCTGGAGAAAGAAGCCAAGCGTCTCAGGACAATTTTATTCAGATGCTGGGCTACGGTCTaGGCTGTGCTGTTGTCGGTG +
Preference number: 4 (lower is better)
Translates to: RGSSLEKEAKRLRTILFRCWATV*AVLLSV
Trigger: CACCGACAACAGCACAGCGCAGACCGTAGCCCAGCA...TCTGAATAAAATTGTCCTGAGACGCTTGGCTTCTTTCTCCAGAGAAGACCCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAAGAGGATGCACAACACTaGCTCCCCGGGTTGGTCACA +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHEEDAQH*LPGLVT
Trigger: TGTGACCAACCCGGGGAGGCAGTGTTGTGCATCCTC...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS-3UTR GCA 90 bp CTTTCCAAAGGAAGGGGACCACAGGAATCCCTTATCTGTATCCCCATCCATAACCCCCTGCGATCCATCTaGAAGGACATGGCGATGACG +
Preference number: 4 (lower is better)
Translates to: LSKGRGPQESLICIPIHNPLRSI*KDMAMT
Trigger: CGTCATCGCCATGTCCTTGCAGATGGATCGCAGGGG...GTTATGGATGGGGATACAGATAAGGGATTCCTGTGGTCCCCTTCCTTTGGAAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp GGTGTCCATGAACCAGCCTTATCAGGTCACTGTGTACAACTCATCCCGATCATTCCCCTGCGATCCATCTaGAAGGACATGGCGATGACG +
Preference number: 4 (lower is better)
Translates to: GVHEPALSGHCVQLIPIIPLRSI*KDMAMT
Trigger: CGTCATCGCCATGTCCTTGCAGATGGATCGCAGGGG...AATGATCGGGATGAGTTGTACACAGTGACCTGATAAGGCTGGTTCATGGACACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCCGGAAGCCATGGAGATaGCAGGCAGGAGGTAGAAGA +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPARKPWR*QAGGRR
Trigger: TCTTCTACCTCCTGCCTGGCATCTCCATGGCTTCCG...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS-3UTR GCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATCGGAAGCCATGGAGATaGCAGGCAGGAGGTAGAAGA +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHRKPWR*QAGGRR
Trigger: TCTTCTACCTCCTGCCTGGCATCTCCATGGCTTCCG...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS-3UTR CCA 90 bp TACCATAGCAACTGCAGCAGGAGGGTATCCCCATGCCAAGGCAGGATGGCATTATCCAACCGAAGCTCCTaGGTGTATTCAGGGACAAAG +
Preference number: 4 (lower is better)
Translates to: YHSNCSRRVSPCQGRMALSNRSS*VYSGTK
Trigger: CTTTGTCCCTGAATACACCCAGGAGCTTCGGTTGGA...TAATGCCATCCTGCCTTGGCATGGGGATACCCTCCTGCTGCAGTTGCTATGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCGAGGACAGTAGCAAATaGCAGGATGGAGCGAGGCCA +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPAEDSSK*QDGARP
Trigger: TGGCCTCGCTCCATCCTGCCATTTGCTACTGTCCTC...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp GGGCTCCAGGTGGAAACAGCTGTGACCTTCAGAGGAATTGGCAGCAGCCATAAAGTCCTCCCTCAGGACTaGATAGTTCAGGAGACAGAA +
Preference number: 4 (lower is better)
Translates to: GLQVETAVTFRGIGSSHKVLPQD*IVQETE
Trigger: TTCTGTCTCCTGAACTATCCAGTCCTGAGGGAGGAC...TTTATGGCTGCTGCCAATTCCTCTGAAGGTCACAGCTGTTTCCACCTGGAGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp ACTTCTGCAAACAGGCCCAGGACCCAGCTTTTTCCTCTCGTGGTGGCAGAAGAAGTCCTCCCTCAGGACTaGATAGTTCAGGAGACAGAA +
Preference number: 4 (lower is better)
Translates to: TSANRPRTQLFPLVVAEEVLPQD*IVQETE
Trigger: TTCTGTCTCCTGAACTATCCAGTCCTGAGGGAGGAC...TTCTTCTGCCACCACGAGAGGAAAAAGCTGGGTCCTGGGCCTGTTTGCAGAAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CTTCTGCAAACAGGCCCAGGACCCAGCTTTTTCCTCTCGTGGTGGCAGAAGAAAAGGCTCTCAGAAACATaGGGTAGCCCTGGAAAAAGG +
Preference number: 4 (lower is better)
Translates to: LLQTGPGPSFFLSWWQKKRLSET*GSPGKR
Trigger: CCTTTTTCCAGGGCTACCCCATGTTTCTGAGAGCCT...TTTCTTCTGCCACCACGAGAGGAAAAAGCTGGGTCCTGGGCCTGTTTGCAGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAATGCCAACGGAAGCCATaGAGATGCCAGGCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHECQRKP*RCQAGG
Trigger: ACCTCCTGCCTGGCATCTCCATGGCTTCCGTTGGCA...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS-3UTR TCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCACAGGGTGGGAGATGTTaGCTGAGGTGTTGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPQGGRC*LRCCPA
Trigger: TGCTGGACAACACCTCAGTCAACATCTCCCACCCTG...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR TCA 90 bp GGCCTTGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGCATTGTGTGCCTTCTTGTGGTGCAGTTGAGTaGAGTGTTGAAGCTGAGGAA +
Preference number: 4 (lower is better)
Translates to: GLGPLKREGNTSEHCVPSCGAVE*SVEAEE
Trigger: TTCCTCAGCTTCAACACTTCACTCAACTGCACCACA...AGAAGGCACACAATGCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR TCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCGTTGGCCATGTGAGATaGGGCTCTCAGAAACATGGG +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPAVGHVR*GSQKHG
Trigger: CCCATGTTTCTGAGAGCCTCATCTCACATGGCCAAC...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR TCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATTCTACAGGGAAAAGGTaGCAATCAGGTAGGTGGGGC +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHSTGKR*QSGRWG
Trigger: GCCCCACCTACCTGATTGTCACCTTTTCCCTGTAGA...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128597.3
CDS-3UTR GCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAAAGTGGAAGAGCCGGGTaGTGCCATACCAGCTGTAGA +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHESGRAG*CHTSCR
Trigger: TCTACAGCTGGTATGGCAGCACCCGGCTCTTCCACT...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTATCTAGGCAGGGTGGTTaGCCCCACTGTGACACGTAC +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALSRQGG*PHCDTY
Trigger: GTACGTGTCACAGTGGGGGCAACCACCCTGCCTAGA...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCATCAGGGCACACAAGCTaGAGGGAGAGGTACCAGTTG +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPSGHTS*RERYQL
Trigger: CAACTGGTACCTCTCCCTGCAGCTTGTGTGCCCTGA...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAATCAGGGCACACAAGCTaGAGGGAGAGGTACCAGTTG +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHESGHTS*RERYQL
Trigger: CAACTGGTACCTCTCCCTGCAGCTTGTGTGCCCTGA...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCACCAGGAAGGAACGGTaGAGGGATATAGCAATGGGG +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPATRKER*RDIAMG
Trigger: CCCCATTGCTATATCCCTGCACCGTTCCTTCCTGGT...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATACCAGGAAGGAACGGTaGAGGGATATAGCAATGGGG +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHTRKER*RDIAMG
Trigger: CCCCATTGCTATATCCCTGCACCGTTCCTTCCTGGT...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTCTTCAGACGGGCCATaGAAAGAATGGTCACCCAGG +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPASSDGP*KEWSPR
Trigger: CCTGGGTGACCATTCTTTGCATGGCCCGTCTGAAGA...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS-3UTR GCA 90 bp CATCCCGATCATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACAGGAGTTCCAGATGCCCCTaGGATCCATCTGCAAGGACA +
Preference number: 4 (lower is better)
Translates to: HPDHSCRSGSDKGTSANRSSRCP*DPSART
Trigger: TGTCCTTGCAGATGGATCGCAGGGGCATCTGGAACT...CCTGTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATACAAAGCCCTTCACCTaGATCTTCTGGGAGGAGGGA +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHTKPFT*IFWEEG
Trigger: TCCCTCCTCCCAGAAGATCCAGGTGAAGGGCTTTGT...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAAGAGGACAGTAGCAAATaGCAGGATGGAGCGAGGCCA +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHEEDSSK*QDGARP
Trigger: TGGCCTCGCTCCATCCTGCCATTTGCTACTGTCCTC...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp AGGAGACCAGAAAGATTGGGCTGGGGATCCAGAACCCACTCCTTAATCCTCAGTAGGCTCTCAGAAACATaGGGTAGCCCTGGAAAAAGG +
Preference number: 4 (lower is better)
Translates to: RRPERLGWGSRTHSLILSRLSET*GSPGKR
Trigger: CCTTTTTCCAGGGCTACCCCATGTTTCTGAGAGCCT...ACTGAGGATTAAGGAGTGGGTTCTGGATCCCCAGCCCAATCTTTCTGGTCTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR TCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCACAGGGACAAAGATCTTaGGGTAGCTGGGGTAGGAGA +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPQGQRS*GSWGRR
Trigger: TCTCCTACCCCAGCTACCTCAAGATCTTTGTCCCTG...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR TCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCGTAGCGTGTCATAACTaGGGATGCACAACACTGCCT +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPAVACHN*GCTTLP
Trigger: AGGCAGTGTTGTGCATCCTCAGTTATGACACGCTAC...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS-3UTR TCA 90 bp TCCTTGCTTGTGGGTCTCATATCACGGCTTTCCAAAGGAAGGGGACCACAGGAAGTCACTGGTCATCATTaGAGTATACATGGCGATGCC +
Preference number: 4 (lower is better)
Translates to: SLLVGLISRLSKGRGPQEVTGHH*SIHGDA
Trigger: GGCATCGCCATGTATACTTCAATGATGACCAGTGAC...TTCCTGTGGTCCCCTTCCTTTGGAAAGCCGTGATATGAGACCCACAAGCAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCCAAGGTGCTCAACAATaGCCTGATATGGAAGGAGGC +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPAQGAQQ*PDMEGG
Trigger: GCCTCCTTCCATATCAGGGCATTGTTGAGCACCTTG...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATCAAGGTGCTCAACAATaGCCTGATATGGAAGGAGGC +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHQGAQQ*PDMEGG
Trigger: GCCTCCTTCCATATCAGGGCATTGTTGAGCACCTTG...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp TACCATAGCAACTGCAGCAGGAGGGTATCCCCATGCCAAGGCAGGATGGCATTATTGGGACAGCTGGATTaGAGAGGTATCATAAGTCTG +
Preference number: 4 (lower is better)
Translates to: YHSNCSRRVSPCQGRMALLGQLD*RGIISL
Trigger: CAGACTTATGATACCTCTGCAATCCAGCTGTCCCAA...TAATGCCATCCTGCCTTGGCATGGGGATACCCTCCTGCTGCAGTTGCTATGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp TCCTTGCTTGTGGGTCTCATATCACGGCTTTCCAAAGGAAGGGGACCACAGGAAGTATCAAGGCGGAGCTaGATTACAGAAGGCATGCTT +
Preference number: 4 (lower is better)
Translates to: SLLVGLISRLSKGRGPQEVSRRS*ITEGML
Trigger: AAGCATGCCTTCTGTAATGCAGCTCCGCCTTGATAC...TTCCTGTGGTCCCCTTCCTTTGGAAAGCCGTGATATGAGACCCACAAGCAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp AGGGGGTCTTCTCTGGAGAAAGAAGCCAAGCGTCTCAGGACAATTTTATTCAGATCAGGGCACACAAGCTaGAGGGAGAGGTACCAGTTG +
Preference number: 4 (lower is better)
Translates to: RGSSLEKEAKRLRTILFRSGHTS*RERYQL
Trigger: CAACTGGTACCTCTCCCTGCAGCTTGTGTGCCCTGA...TCTGAATAAAATTGTCCTGAGACGCTTGGCTTCTTTCTCCAGAGAAGACCCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp AGGAGACCAGAAAGATTGGGCTGGGGATCCAGAACCCACTCCTTAATCCTCAGTCATCCCGATCATTCCTaGAGATCTGGTAGTGACAAG +
Preference number: 4 (lower is better)
Translates to: RRPERLGWGSRTHSLILSHPDHS*RSGSDK
Trigger: CTTGTCACTACCAGATCTGCAGGAATGATCGGGATG...ACTGAGGATTAAGGAGTGGGTTCTGGATCCCCAGCCCAATCTTTCTGGTCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTAGAAGGACAGCTTCTGTaGGGCCTGGGAGAAGTGTTC +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALEGQLL*GLGEVF
Trigger: GAACACTTCTCCCAGGCCCCACAGAAGCTGTCCTTC...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAACAAAGCCCTTCACCTaGATCTTCTGGGAGGAGGGA +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPTKPFT*IFWEEG
Trigger: TCCCTCCTCCCAGAAGATCCAGGTGAAGGGCTTTGT...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATTCCAACCGAAGCTCCTaGGTGTATTCAGGGACAAAG +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHSNRSS*VYSGTK
Trigger: CTTTGTCCCTGAATACACCCAGGAGCTTCGGTTGGA...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCACAAGTCAGCACCCTCTaGAAGTTTCTAGGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPQVSTL*KFLGRV
Trigger: CACCCTGCCTAGAAACTTCCAGAGGGTGCTGACTTG...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp ACTCATCCCGATCATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACCAAGTCAGCACCCTCTaGAAGTTTCTAGGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: THPDHSCRSGSDKGTSANQVSTL*KFLGRV
Trigger: CACCCTGCCTAGAAACTTCCAGAGGGTGCTGACTTG...GTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGGGATGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp GGGCTCCAGGTGGAAACAGCTGTGACCTTCAGAGGAATTGGCAGCAGCCATAAAGATGGTCACACTCCATaGCCTACATACTGTAAAGAC +
Preference number: 4 (lower is better)
Translates to: GLQVETAVTFRGIGSSHKDGHTP*PTYCKD
Trigger: GTCTTTACAGTATGTAGGCCATGGAGTGTGACCATC...TTTATGGCTGCTGCCAATTCCTCTGAAGGTCACAGCTGTTTCCACCTGGAGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATAGGCTCTCAGAAACATaGGGTAGCCCTGGAAAAAGG +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHRLSET*GSPGKR
Trigger: CCTTTTTCCAGGGCTACCCCATGTTTCTGAGAGCCT...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR TCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTACAGGGACAAAGATCTTaGGGTAGCTGGGGTAGGAGA +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALQGQRS*GSWGRR
Trigger: TCTCCTACCCCAGCTACCTCAAGATCTTTGTCCCTG...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR TCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATTGTGGTGCAGTTGAGTaGAGTGTTGAAGCTGAGGAA +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHCGAVE*SVEAEE
Trigger: TTCCTCAGCTTCAACACTTCACTCAACTGCACCACA...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR TCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTAGTTGGCCATGTGAGATaGGGCTCTCAGAAACATGGG +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALVGHVR*GSQKHG
Trigger: CCCATGTTTCTGAGAGCCTCATCTCACATGGCCAAC...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR TCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCGTCACTGGTCATCATTaGAGTATACATGGCGATGCC +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPAVTGHH*SIHGDA
Trigger: GGCATCGCCATGTATACTTCAATGATGACCAGTGAC...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS-3UTR GCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTAAGTTCCAGATGCCCCTaGGATCCATCTGCAAGGACA +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALSSRCP*DPSART
Trigger: TGTCCTTGCAGATGGATCGCAGGGGCATCTGGAACT...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATCATCCCGATCATTCCTaGAGATCTGGTAGTGACAAG +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHHPDHS*RSGSDK
Trigger: CTTGTCACTACCAGATCTGCAGGAATGATCGGGATG...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS-3UTR CCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAAACAATGCCCTGATATaGAAGGAGGCGTGGCTCAAG +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPNNALI*KEAWLK
Trigger: CTTGAGCCACGCCTCCTTCCATATCAGGGCATTGTT...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAAAACAATGCCCTGATATaGAAGGAGGCGTGGCTCAAG +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHENNALI*KEAWLK
Trigger: CTTGAGCCACGCCTCCTTCCATATCAGGGCATTGTT...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTACAAGTCAGCACCCTCTaGAAGTTTCTAGGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALQVSTL*KFLGRV
Trigger: CACCCTGCCTAGAAACTTCCAGAGGGTGCTGACTTG...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp TCTGGAGAAAGAAGCCAAGCGTCTCAGGACAATTTTATTCAGATGGAAACCTGGGAGGACAGTAGCAAATaGCAGGATGGAGCGAGGCCA +
Preference number: 4 (lower is better)
Translates to: SGERSQASQDNFIQMETWEDSSK*QDGARP
Trigger: TGGCCTCGCTCCATCCTGCCATTTGCTACTGTCCTC...CCAGGTTTCCATCTGAATAAAATTGTCCTGAGACGCTTGGCTTCTTTCTCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAAGTCCTCCCTCAGGACTaGATAGTTCAGGAGACAGAA +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHEVLPQD*IVQETE
Trigger: TTCTGTCTCCTGAACTATCCAGTCCTGAGGGAGGAC...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAAGGCTCTCAGAAACATaGGGTAGCCCTGGAAAAAGG +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPRLSET*GSPGKR
Trigger: CCTTTTTCCAGGGCTACCCCATGTTTCTGAGAGCCT...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp AGGAGACCAGAAAGATTGGGCTGGGGATCCAGAACCCACTCCTTAATCCTCAGTTTTTTCCTCTCGTGGTaGCAGAAGAAATGCTGCACT +
Preference number: 4 (lower is better)
Translates to: RRPERLGWGSRTHSLILSFFLSW*QKKCCT
Trigger: AGTGCAGCATTTCTTCTGCCACCACGAGAGGAAAAA...ACTGAGGATTAAGGAGTGGGTTCTGGATCCCCAGCCCAATCTTTCTGGTCTCCT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp CCGATCATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACAGGCCCACCGTGGAGAAGAACATaGTGTAAAAGTAGACAGAGG +
Preference number: 4 (lower is better)
Translates to: PIIPADLVVTRELLQTGPPWRRT*CKSRQR
Trigger: CCTCTGTCTACTTTTACACCATGTTCTTCTCCACGG...TGGGCCTGTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR TCA 90 bp AGCCTTATCAGGTCACTGTGTACAACTCATCCCGATCATTCCTGCAGATCTGGTTGTGGTGCAGTTGAGTaGAGTGTTGAAGCTGAGGAA +
Preference number: 4 (lower is better)
Translates to: SLIRSLCTTHPDHSCRSGCGAVE*SVEAEE
Trigger: TTCCTCAGCTTCAACACTTCACTCAACTGCACCACA...ACCAGATCTGCAGGAATGATCGGGATGAGTTGTACACAGTGACCTGATAAGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR TCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAAGTCACTGGTCATCATTaGAGTATACATGGCGATGCC +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHEVTGHH*SIHGDA
Trigger: GGCATCGCCATGTATACTTCAATGATGACCAGTGAC...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS-3UTR GCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTACAAGGTGCTCAACAATaGCCTGATATGGAAGGAGGC +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALQGAQQ*PDMEGG
Trigger: GCCTCCTTCCATATCAGGGCATTGTTGAGCACCTTG...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp AGCCTTATCAGGTCACTGTGTACAACTCATCCCGATCATTCCTGCAGATCTGGTGTATCAAGGCGGAGCTaGATTACAGAAGGCATGCTT +
Preference number: 4 (lower is better)
Translates to: SLIRSLCTTHPDHSCRSGVSRRS*ITEGML
Trigger: AAGCATGCCTTCTGTAATGCAGCTCCGCCTTGATAC...ACCAGATCTGCAGGAATGATCGGGATGAGTTGTACACAGTGACCTGATAAGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp TCCTTGCTTGTGGGTCTCATATCACGGCTTTCCAAAGGAAGGGGACCACAGGAAGTAGGATGTGCCAAATaGTGTGGGTGTAGTAGTAAT +
Preference number: 4 (lower is better)
Translates to: SLLVGLISRLSKGRGPQEVGCAK*CGCSSN
Trigger: ATTACTACTACACCCACAGCATTTGGCACATCCTAC...TTCCTGTGGTCCCCTTCCTTTGGAAAGCCGTGATATGAGACCCACAAGCAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR GCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACATCCCGATCATTCCTaGAGATCTGGTAGTGACAAG +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHEHPDHS*RSGSDK
Trigger: CTTGTCACTACCAGATCTGCAGGAATGATCGGGATG...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS-3UTR CCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTAAACAATGCCCTGATATaGAAGGAGGCGTGGCTCAAG +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALNNALI*KEAWLK
Trigger: CTTGAGCCACGCCTCCTTCCATATCAGGGCATTGTT...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCGATGGTCACACTCCATaGCCTACATACTGTAAAGAC +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPADGHTP*PTYCKD
Trigger: GTCTTTACAGTATGTAGGCCATGGAGTGTGACCATC...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTAGTCCTCCCTCAGGACTaGATAGTTCAGGAGACAGAA +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALVLPQD*IVQETE
Trigger: TTCTGTCTCCTGAACTATCCAGTCCTGAGGGAGGAC...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCAGGCGTGGTAGAACGTaGAGAAGAACATGGTGTAAA +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPARRGRT*RRTWCK
Trigger: TTTACACCATGTTCTTCTCCACGTTCTACCACGCCT...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS-3UTR CCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTTTTCCTCTCGTGGTaGCAGAAGAAATGCTGCACT +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPAFFLSW*QKKCCT
Trigger: AGTGCAGCATTTCTTCTGCCACCACGAGAGGAAAAA...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS-3UTR TCA 90 bp GGCCTTGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGCATTGTGTGCCTTCTTTGTTTTGTATAAGATaGTGGATGGTCACACTCCAT +
Preference number: 4 (lower is better)
Translates to: GLGPLKREGNTSEHCVPSLFCIR*WMVTLH
Trigger: ATGGAGTGTGACCATCCATCATCTTATACAAAACAA...AGAAGGCACACAATGCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR TCA 90 bp CTTCTGCAAACAGGCCCAGGACCCAGCTTTTTCCTCTCGTGGTGGCAGAAGAAATTGTTTTGTATAAGATaGTGGATGGTCACACTCCAT +
Preference number: 4 (lower is better)
Translates to: LLQTGPGPSFFLSWWQKKLFCIR*WMVTLH
Trigger: ATGGAGTGTGACCATCCATCATCTTATACAAAACAA...TTTCTTCTGCCACCACGAGAGGAAAAAGCTGGGTCCTGGGCCTGTTTGCAGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR TCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTATGTGGTGCAGTTGAGTaGAGTGTTGAAGCTGAGGAA +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALCGAVE*SVEAEE
Trigger: TTCCTCAGCTTCAACACTTCACTCAACTGCACCACA...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCATTGGGACAGCTGGATTaGAGAGGTATCATAAGTCTG +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPLGQLD*RGIISL
Trigger: CAGACTTATGATACCTCTGCAATCCAGCTGTCCCAA...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTCATCCCGATCATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACATTGGGACAGCTGGATTaGAGAGGTATCATAAGTCTG +
Preference number: 4 (lower is better)
Translates to: LIPIIPADLVVTRELLQTLGQLD*RGIISL
Trigger: CAGACTTATGATACCTCTGCAATCCAGCTGTCCCAA...TGTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGGGATGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCATTACAGAAGGCATaGTTGAATGCACTAGCACGA +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPALQKA*LNALAR
Trigger: TCGTGCTAGTGCATTCAAGCATGCCTTCTGTAATGC...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTAGTATCAAGGCGGAGCTaGATTACAGAAGGCATGCTT +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALVSRRS*ITEGML
Trigger: AAGCATGCCTTCTGTAATGCAGCTCCGCCTTGATAC...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGTAGGATGTGCCAAATaGTGTGGGTGTAGTAGTAAT +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHVGCAK*CGCSSN
Trigger: ATTACTACTACACCCACAGCATTTGGCACATCCTAC...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS-3UTR CCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGATGGTCACACTCCATaGCCTACATACTGTAAAGAC +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPDGHTP*PTYCKD
Trigger: GTCTTTACAGTATGTAGGCCATGGAGTGTGACCATC...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp AGCCTTATCAGGTCACTGTGTACAACTCATCCCGATCATTCCTGCAGATCTGGTGATGGTCACACTCCATaGCCTACATACTGTAAAGAC +
Preference number: 4 (lower is better)
Translates to: SLIRSLCTTHPDHSCRSGDGHTP*PTYCKD
Trigger: GTCTTTACAGTATGTAGGCCATGGAGTGTGACCATC...ACCAGATCTGCAGGAATGATCGGGATGAGTTGTACACAGTGACCTGATAAGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAAGGCGTGGTAGAACGTaGAGAAGAACATGGTGTAAA +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPRRGRT*RRTWCK
Trigger: TTTACACCATGTTCTTCTCCACGTTCTACCACGCCT...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS-3UTR CCA 90 bp AGGGGGTCTTCTCTGGAGAAAGAAGCCAAGCGTCTCAGGACAATTTTATTCAGAAGCTTTTTCCTCTCGTaGTGGCAGAAGAAATGCTGC +
Preference number: 4 (lower is better)
Translates to: RGSSLEKEAKRLRTILFRSFFLS*WQKKCC
Trigger: GCAGCATTTCTTCTGCCACCACGAGAGGAAAAAGCT...TCTGAATAAAATTGTCCTGAGACGCTTGGCTTCTTTCTCCAGAGAAGACCCCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTAAGCTTTTTCCTCTCGTaGTGGCAGAAGAAATGCTGC +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALSFFLS*WQKKCC
Trigger: GCAGCATTTCTTCTGCCACCACGAGAGGAAAAAGCT...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS-3UTR CCA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCACCGTGGAGAAGAACATaGTGTAAAAGTAGACAGAGG +
Preference number: 4 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPPWRRT*CKSRQR
Trigger: CCTCTGTCTACTTTTACACCATGTTCTTCTCCACGG...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGGACAAGTAGTACCGTaGAGAAGAACATGGTGTAAA +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHGQVVP*RRTWCK
Trigger: TTTACACCATGTTCTTCTCCACGGTACTACTTGTCC...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCGGACAAGTAGTACCGTaGAGAAGAACATGGTGTAAA +
Preference number: 4 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPAGQVVP*RRTWCK
Trigger: TTTACACCATGTTCTTCTCCACGGTACTACTTGTCC...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTATTGGGACAGCTGGATTaGAGAGGTATCATAAGTCTG +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALLGQLD*RGIISL
Trigger: CAGACTTATGATACCTCTGCAATCCAGCTGTCCCAA...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR GCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTAGCATTACAGAAGGCATaGTTGAATGCACTAGCACGA +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALALQKA*LNALAR
Trigger: TCGTGCTAGTGCATTCAAGCATGCCTTCTGTAATGC...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTATTTTTCCTCTCGTGGTaGCAGAAGAAATGCTGCACT +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALFFLSW*QKKCCT
Trigger: AGTGCAGCATTTCTTCTGCCACCACGAGAGGAAAAA...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS-3UTR TCA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATTTGTTTTGTATAAGATaGTGGATGGTCACACTCCAT +
Preference number: 4 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHLFCIR*WMVTLH
Trigger: ATGGAGTGTGACCATCCATCATCTTATACAAAACAA...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CCA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTAACGTGGAGAAGAACATaGTGTAAAAGTAGACAGAGG +
Preference number: 4 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALTWRRT*CKSRQR
Trigger: CCTCTGTCTACTTTTACACCATGTTCTTCTCCACGT...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS-3UTR TCA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAATTGTTTTGTATAAGATaGTGGATGGTCACACTCCAT +
Preference number: 4 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHELFCIR*WMVTLH
Trigger: ATGGAGTGTGACCATCCATCATCTTATACAAAACAA...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 90 bp GGGCCTGGGAGAAGTGTTCAGATACCAGTCCAGCCTCGCTCTCCTTaGTGTTGCTGGCGGCGGCAGGCGGAGGCCGAGCCAGGAGCAGCA +
Preference number: 5 (lower is better)
Translates to: GPGRSVQIPVQPRSP*CCWRRQAEAEPGAA
Trigger: TGCTGCTCCTGGCTCGGCCTCCGCCTGCCGCCGCCAGCAACAGCAAGGAGAGCGAGGCTGGACTGGTATCTGAACACTTCTCCCAGGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 90 bp GGAGCAGCACAGTGTCCGGGGGCACGCGGAAGTGGAAGAGCCGGGTaGTGCCATACCAGCTGTAGAAGGACAGCTTCTGTGGGGCCTGGG +
Preference number: 5 (lower is better)
Translates to: GAAQCPGARGSGRAG*CHTSCRRTASVGPG
Trigger: CCCAGGCCCCACAGAAGCTGTCCTTCTACAGCTGGTATGGCAGCACCCGGCTCTTCCACTTCCGCGTGCCCCCGGACACTGTGCTGCTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 90 bp GCAGCACAGTGTCCGGGGGCACGCGGAAGTGGAAGAGCCGGGTGCTaGCATACCAGCTGTAGAAGGACAGCTTCTGTGGGGCCTGGGAGA +
Preference number: 5 (lower is better)
Translates to: AAQCPGARGSGRAGC*HTSCRRTASVGPGR
Trigger: TCTCCCAGGCCCCACAGAAGCTGTCCTTCTACAGCTGGTATGGCAGCACCCGGCTCTTCCACTTCCGCGTGCCCCCGGACACTGTGCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CTGGAGCCAGACCTCATACAGCTGAGCAGCCTGCTACCTCAGGCTCTCCCGAAGTCGCTCTCCTTGCTGTaGCTGGCGGCGGCAGGCGGA +
Preference number: 5 (lower is better)
Translates to: LEPDLIQLSSLLPQALPKSLSLL*LAAAGG
Trigger: TCCGCCTGCCGCCGCCAGCAACAGCAAGGAGAGCGA...CTTCGGGAGAGCCTGAGGTAGCAGGCTGCTCAGCTGTATGAGGTCTGGCTCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS GCA 90 bp ACTGTGATCTCTTCGTCAGTGCATGAGGGACTTCCCTGGGACACGTaGAGCAGCCAGCGGAGCAGCACAGTGTCCGGGGGCACGCGGAAG +
Preference number: 5 (lower is better)
Translates to: TVISSSVHEGLPWDT*SSQRSSTVSGGTRK
Trigger: CTTCCGCGTGCCCCCGGACACTGTGCTGCTCCGCTGGCTGCTGCACGTGTCCCAGGGAAGTCCCTCATGCACTGACGAAGAGATCACAGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 90 bp GCCAGTGCAAGTCAGCACCCTCTGGAAGTTTCTAGGCAGGGTGGTTaGCCCCACTGTGACACGTACTGGGCAGCCGGGGCTCACACTGGA +
Preference number: 5 (lower is better)
Translates to: ASASQHPLEVSRQGG*PHCDTYWAAGAHTG
Trigger: TCCAGTGTGAGCCCCGGCTGCCCAGTACGTGTCACAGTGGGGGCAACCACCCTGCCTAGAAACTTCCAGAGGGTGCTGACTTGCACTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 90 bp GCGCTGTGCTGTTGTCGGTGCAGCTCCACCCACGCCAACCTGCCTTaGAGCTGCAGCCTGCGTACACATAGCCGTATCTACGGAGCAGGA +
Preference number: 5 (lower is better)
Translates to: ALCCCRCSSTHANLP*SCSLRTHSRIYGAG
Trigger: TCCTGCTCCGTAGATACGGCTATGTGTACGCAGGCTGCAGCTGCAAGGCAGGTTGGCGTGGGTGGAGCTGCACCGACAACAGCACAGCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 90 bp AGGAACATGAGGTTGCTGAGCGTGAGCAGAAGCGCTGCTGCCCTCTaGTGGGCTACGGTCTGCGCTGTGCTGTTGTCGGTGCAGCTCCAC +
Preference number: 5 (lower is better)
Translates to: RNMRLLSVSRSAAAL*WATVCAVLLSVQLH
Trigger: GTGGAGCTGCACCGACAACAGCACAGCGCAGACCGTAGCCCAGCAGAGGGCAGCAGCGCTTCTGCTCACGCTCAGCAACCTCATGTTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 90 bp GGAGATGCCAGGCAGGAGGTAGAAGACCCAGCGCTGCCAGGAGGTTaGGTAGCACTGTCCCCGGTGCCCACAGCGGTATATCCACATGGA +
Preference number: 5 (lower is better)
Translates to: GDARQEVEDPALPGG*VALSPVPTAVYPHG
Trigger: TCCATGTGGATATACCGCTGTGGGCACCGGGGACAGTGCTACCCAACCTCCTGGCAGCGCTGGGTCTTCTACCTCCTGCCTGGCATCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS GCA 90 bp GATAGTTCAGGAGACAGAAGGGGCCACTGTCCACCCTGCTACTCCTaGCCAGGTCCCGGTGGACAGCGCTTTGGGACAGCTGGATTGCAG +
Preference number: 5 (lower is better)
Translates to: DSSGDRRGHCPPCYS*PGPGGQRFGTAGLQ
Trigger: CTGCAATCCAGCTGTCCCAAAGCGCTGTCCACCGGGACCTGGGCAGGAGTAGCAGGGTGGACAGTGGCCCCTTCTGTCTCCTGAACTATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 90 bp TCAGGACTGGATAGTTCAGGAGACAGAAGGGGCCACTGTCCACCCTaGTACTCCTGCCCAGGTCCCGGTGGACAGCGCTTTGGGACAGCT +
Preference number: 5 (lower is better)
Translates to: SGLDSSGDRRGHCPP*YSCPGPGGQRFGTA
Trigger: AGCTGTCCCAAAGCGCTGTCCACCGGGACCTGGGCAGGAGTAGCAGGGTGGACAGTGGCCCCTTCTGTCTCCTGAACTATCCAGTCCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 90 bp CTGGAAGTTTCTAGGCAGGGTGGTTGCCCCCACTGTGACACGTACTaGGCAGCCGGGGCTCACACTGGACACACAGCCCTGCAGTTCCAA +
Preference number: 5 (lower is better)
Translates to: LEVSRQGGCPHCDTY*AAGAHTGHTALQFQ
Trigger: TTGGAACTGCAGGGCTGTGTGTCCAGTGTGAGCCCCGGCTGCCCAGTACGTGTCACAGTGGGGGCAACCACCCTGCCTAGAAACTTCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 90 bp GTCACTTGTAACCACCGGCCCCAGGGTGGAGAGGACAGTAGCAAATaGCAGGATGGAGCGAGGCCAGTGCAAGTCAGCACCCTCTGGAAG +
Preference number: 5 (lower is better)
Translates to: VTCNHRPQGGEDSSK*QDGARPVQVSTLWK
Trigger: CTTCCAGAGGGTGCTGACTTGCACTGGCCTCGCTCCATCCTGCCATTTGCTACTGTCCTCTCCACCCTGGGGCCGGTGGTTACAAGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 90 bp GAAGAGCCGGGTGCTGCCATACCAGCTGTAGAAGGACAGCTTCTGTaGGGCCTGGGAGAAGTGTTCAGATACCAGTCCAGCCTCGCTCTC +
Preference number: 5 (lower is better)
Translates to: EEPGAAIPAVEGQLL*GLGEVFRYQSSLAL
Trigger: GAGAGCGAGGCTGGACTGGTATCTGAACACTTCTCCCAGGCCCCACAGAAGCTGTCCTTCTACAGCTGGTATGGCAGCACCCGGCTCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp AGCAACTGCAGCAGGAGGGTATCCCCATGCCAAGGCAGGATGGCATTAAGGGTAGCGTGGCTCAAGGTGTaGTCAGGGAAGCTGGTGCCC +
Preference number: 5 (lower is better)
Translates to: SNCSRRVSPCQGRMALRVAWLKV*SGKLVP
Trigger: GGGCACCAGCTTCCCTGACAACACCTTGAGCCACGC...TACCCTTAATGCCATCCTGCCTTGGCATGGGGATACCCTCCTGCTGCAGTTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CAA 90 bp TGCAAACAGGCCCAGGACCCAGCTTTTTCCTCTCGTGGTGGCAGAAGAAATGCTCCACGCCAACCTGCCTaGCAGCTGCAGCCTGCGTAC +
Preference number: 5 (lower is better)
Translates to: CKQAQDPAFSSRGGRRNAPRQPA*QLQPAY
Trigger: GTACGCAGGCTGCAGCTGCAAGGCAGGTTGGCGTGG...AGCATTTCTTCTGCCACCACGAGAGGAAAAAGCTGGGTCCTGGGCCTGTTTGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp GGGCTCCAGGTGGAAACAGCTGTGACCTTCAGAGGAATTGGCAGCAGCCATAAAAGCGCTGCCAGGAGGTaGGGTAGCACTGTCCCCGGT +
Preference number: 5 (lower is better)
Translates to: GLQVETAVTFRGIGSSHKSAARR*GSTVPG
Trigger: ACCGGGGACAGTGCTACCCAACCTCCTGGCAGCGCT...TTTATGGCTGCTGCCAATTCCTCTGAAGGTCACAGCTGTTTCCACCTGGAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS TCA 90 bp ACGCCCCAGAGCCCAGAAAGTCGCAATACTGTAGCGTGTCATAACTaGGGATGCACAACACTGCCTCCCCGGGTTGGTCACAGGCGTGGT +
Preference number: 5 (lower is better)
Translates to: TPQSPESRNTVACHN*GCTTLPPRVGHRRG
Trigger: ACCACGCCTGTGACCAACCCGGGGAGGCAGTGTTGTGCATCCTCAGTTATGACACGCTACAGTATTGCGACTTTCTGGGCTCTGGGGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS CCA 90 bp AGCAAATGGCAGGATGGAGCGAGGCCAGTGCAAGTCAGCACCCTCTaGAAGTTTCTAGGCAGGGTGGTTGCCCCCACTGTGACACGTACT +
Preference number: 5 (lower is better)
Translates to: SKWQDGARPVQVSTL*KFLGRVVAPTVTRT
Trigger: AGTACGTGTCACAGTGGGGGCAACCACCCTGCCTAGAAACTTCCAGAGGGTGCTGACTTGCACTGGCCTCGCTCCATCCTGCCATTTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 90 bp GAAGAGCCGGGTGCTGCCATACCAGCTGTAGAAGGACAGCTTCTGTaGGGCCTGGGAGAAGTGTTCAGATACCAGTCCAGCCTCTACAGG +
Preference number: 5 (lower is better)
Translates to: EEPGAAIPAVEGQLL*GLGEVFRYQSSLYR
Trigger: CCTGTAGAGGCTGGACTGGTATCTGAACACTTCTCCCAGGCCCCACAGAAGCTGTCCTTCTACAGCTGGTATGGCAGCACCCGGCTCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128597.3
CDS-3UTR CAA 90 bp GGCCTTGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGCATTGTGTGCCTTCTCACTGCCTCCCCGGGTaGGTCACAGGCGTGGTAGAA +
Preference number: 5 (lower is better)
Translates to: GLGPLKREGNTSEHCVPSHCLPG*VTGVVE
Trigger: TTCTACCACGCCTGTGACCAACCCGGGGAGGCAGTG...AGAAGGCACACAATGCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS CCA 90 bp CACTGGTCATCATTGAAGTATACATGGCGATGCCAACGGAAGCCATaGAGATGCCAGGCAGGAGGTAGAAGACCCAGCGCTGCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: HWSSLKYTWRCQRKP*RCQAGGRRPSAARR
Trigger: CCTCCTGGCAGCGCTGGGTCTTCTACCTCCTGCCTGGCATCTCCATGGCTTCCGTTGGCATCGCCATGTATACTTCAATGATGACCAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS-3UTR CAA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCATCGCTCTCCTTGCTGTaGCTGGCGGCGGCAGGCGGA +
Preference number: 5 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPSLSLL*LAAAGG
Trigger: TCCGCCTGCCGCCGCCAGCAACAGCAAGGAGAGCGA...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CTGGAGCCAGACCTCATACAGCTGAGCAGCCTGCTACCTCAGGCTCTCCCGAAGCAGTTGAGTGAAGTGTaGAAGCTGAGGAAAGGGGAG +
Preference number: 5 (lower is better)
Translates to: LEPDLIQLSSLLPQALPKQLSEV*KLRKGE
Trigger: CTCCCCTTTCCTCAGCTTCAACACTTCACTCAACTG...CTTCGGGAGAGCCTGAGGTAGCAGGCTGCTCAGCTGTATGAGGTCTGGCTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CAA 90 bp AGTGACAAGGGAACTTCTGCAAACAGGCCCAGGACCCAGCTTTTTCCTCTCGTGAGGGAGAGGTACCAGTaGTCTGTCTCCGGGAAGGGC +
Preference number: 5 (lower is better)
Translates to: SDKGTSANRPRTQLFPLVRERYQ*SVSGKG
Trigger: GCCCTTCCCGGAGACAGACAACTGGTACCTCTCCCT...CACGAGAGGAAAAAGCTGGGTCCTGGGCCTGTTTGCAGAAGTTCCCTTGTCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCAGCGCTGCCAGGAGGTaGGGTAGCACTGTCCCCGGT +
Preference number: 5 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPASAARR*GSTVPG
Trigger: ACCGGGGACAGTGCTACCCAACCTCCTGGCAGCGCT...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS GCA 90 bp CGCTGTCCATGCCTGTATCAAGGCGGAGCTGCATTACAGAAGGCATaGTTGAATGCACTAGCACGAAGGCCCCATTCAGGGGCTGGAAGT +
Preference number: 5 (lower is better)
Translates to: RCPCLYQGGAALQKA*LNALARRPHSGAGS
Trigger: ACTTCCAGCCCCTGAATGGGGCCTTCGTGCTAGTGCATTCAAGCATGCCTTCTGTAATGCAGCTCCGCCTTGATACAGGCATGGACAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 90 bp AAGACGCAAGGTCCCATCAAGTTCCAGATGCCCCTGCGATCCATCTaGAAGGACATGGCGATGACGAGTGTGCCGAGGACAAGTAGTACC +
Preference number: 5 (lower is better)
Translates to: KTQGPIKFQMPLRSI*KDMAMTSVPRTSST
Trigger: GGTACTACTTGTCCTCGGCACACTCGTCATCGCCATGTCCTTGCAGATGGATCGCAGGGGCATCTGGAACTTGATGGGACCTTGCGTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 90 bp TCATCATTGAAGTATACATGGCGATGCCAACGGAAGCCATGGAGATaGCAGGCAGGAGGTAGAAGACCCAGCGCTGCCAGGAGGTTGGGT +
Preference number: 5 (lower is better)
Translates to: SSLKYTWRCQRKPWR*QAGGRRPSAARRLG
Trigger: ACCCAACCTCCTGGCAGCGCTGGGTCTTCTACCTCCTGCCTGGCATCTCCATGGCTTCCGTTGGCATCGCCATGTATACTTCAATGATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS CCA 90 bp TCCAGCATCAAGGTGCTCAACAATGCCCTGATATGGAAGGAGGCGTaGCTCAAGGTGTTGTCAGGGAAGCTGGTGCCCAGAGGGTTGATG +
Preference number: 5 (lower is better)
Translates to: SSIKVLNNALIWKEA*LKVLSGKLVPRGLM
Trigger: CATCAACCCTCTGGGCACCAGCTTCCCTGACAACACCTTGAGCCACGCCTCCTTCCATATCAGGGCATTGTTGAGCACCTTGATGCTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 90 bp GAAGGCATGCTTGAATGCACTAGCACGAAGGCCCCATTCAGGGGCTaGAAGTGTACAGACACCACATCTGTGTCCTCCCTCAGGACTGGA +
Preference number: 5 (lower is better)
Translates to: EGMLECTSTKAPFRG*KCTDTTSVSSLRTG
Trigger: TCCAGTCCTGAGGGAGGACACAGATGTGGTGTCTGTACACTTCCAGCCCCTGAATGGGGCCTTCGTGCTAGTGCATTCAAGCATGCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 90 bp GGCCGTAGGGCCCACAGTCATTCAAACAGGGCACCAGATACAAGATaGTCTCCACGCGAACCACAGCCTGTTCACAATCCTCAGGACTCT +
Preference number: 5 (lower is better)
Translates to: GRRAHSHSNRAPDTR*SPREPQPVHNPQDS
Trigger: AGAGTCCTGAGGATTGTGAACAGGCTGTGGTTCGCGTGGAGACCATCTTGTATCTGGTGCCCTGTTTGAATGACTGTGGGCCCTACGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTATCGCTCTCCTTGCTGTaGCTGGCGGCGGCAGGCGGA +
Preference number: 5 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALSLSLL*LAAAGG
Trigger: TCCGCCTGCCGCCGCCAGCAACAGCAAGGAGAGCGA...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCACCACGCCAACCTGCCTaGCAGCTGCAGCCTGCGTAC +
Preference number: 5 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPPRQPA*QLQPAY
Trigger: GTACGCAGGCTGCAGCTGCAAGGCAGGTTGGCGTGG...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGTCTGCGCTGTGCTGTaGTCGGTGCAGCTCCACCCA +
Preference number: 5 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHVCAVL*SVQLHP
Trigger: TGGGTGGAGCTGCACCGACAACAGCACAGCGCAGAC...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCGTCTGCGCTGTGCTGTaGTCGGTGCAGCTCCACCCA +
Preference number: 5 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPAVCAVL*SVQLHP
Trigger: TGGGTGGAGCTGCACCGACAACAGCACAGCGCAGAC...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATCACTGCCTCCCCGGGTaGGTCACAGGCGTGGTAGAA +
Preference number: 5 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHHCLPG*VTGVVE
Trigger: TTCTACCACGCCTGTGACCAACCCGGGGAGGCAGTG...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS TCA 90 bp GTTGTCTGTCTCCGGGAAGGGCATGATGAGGTTGGCCATGTGAGATaGGGCTCTCAGAAACATGGGGTAGCCCTGGAAAAAGGCTGTGGT +
Preference number: 5 (lower is better)
Translates to: VVCLREGHDEVGHVR*GSQKHGVALEKGCG
Trigger: ACCACAGCCTTTTTCCAGGGCTACCCCATGTTTCTGAGAGCCTCATCTCACATGGCCAACCTCATCATGCCCTTCCCGGAGACAGACAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS TCA 90 bp AGCACTGTCCCCGGTGCCCACAGCGGTATATCCACATGGAGGCCATaGTCACAAAAGCAAAGACGCAAGGTCCCATCAAGTTCCAGATGC +
Preference number: 5 (lower is better)
Translates to: STVPGAHSGISTWRP*SQKQRRKVPSSSRC
Trigger: GCATCTGGAACTTGATGGGACCTTGCGTCTTTGCTTTTGTGATCATGGCCTCCATGTGGATATACCGCTGTGGGCACCGGGGACAGTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS TCA 90 bp TCAAGTTCCAGATGCCCCTGCGATCCATCTGCAAGGACATGGCGATaGCGAGTGTGCCGAGGACAAGTAGTACCGTGGAGAAGAACATGG +
Preference number: 5 (lower is better)
Translates to: SSSRCPCDPSARTWR*RVCRGQVVPWRRTW
Trigger: CCATGTTCTTCTCCACGGTACTACTTGTCCTCGGCACACTCGTCATCGCCATGTCCTTGCAGATGGATCGCAGGGGCATCTGGAACTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 90 bp ATGATGAAGGAGCCTCCGCTGTCCATGCCTGTATCAAGGCGGAGCTaGATTACAGAAGGCATGCTTGAATGCACTAGCACGAAGGCCCCA +
Preference number: 5 (lower is better)
Translates to: MMKEPPLSMPVSRRS*ITEGMLECTSTKAP
Trigger: TGGGGCCTTCGTGCTAGTGCATTCAAGCATGCCTTCTGTAATGCAGCTCCGCCTTGATACAGGCATGGACAGCGGAGGCTCCTTCATCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCGTGGCTCAAGGTGTaGTCAGGGAAGCTGGTGCCC +
Preference number: 5 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPAWLKV*SGKLVP
Trigger: GGGCACCAGCTTCCCTGACAACACCTTGAGCCACGC...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACAGGCCCAGGACCCAGCAGATGTAGGCACAGGTaGGAACAAAGCCCTTCACCT +
Preference number: 5 (lower is better)
Translates to: PADLVVTRELLQTGPGPSRCRHR*EQSPSP
Trigger: AGGTGAAGGGCTTTGTTCCAACCTGTGCCTACATCT...GCTGGGTCCTGGGCCTGTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATAGGGAGAGGTACCAGTaGTCTGTCTCCGGGAAGGGC +
Preference number: 5 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHRERYQ*SVSGKG
Trigger: GCCCTTCCCGGAGACAGACAACTGGTACCTCTCCCT...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTACCACGCCAACCTGCCTaGCAGCTGCAGCCTGCGTAC +
Preference number: 5 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALPRQPA*QLQPAY
Trigger: GTACGCAGGCTGCAGCTGCAAGGCAGGTTGGCGTGG...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp AGCCTTATCAGGTCACTGTGTACAACTCATCCCGATCATTCCTGCAGATCTGGTGTCTGCGCTGTGCTGTaGTCGGTGCAGCTCCACCCA +
Preference number: 5 (lower is better)
Translates to: SLIRSLCTTHPDHSCRSGVCAVL*SVQLHP
Trigger: TGGGTGGAGCTGCACCGACAACAGCACAGCGCAGAC...ACCAGATCTGCAGGAATGATCGGGATGAGTTGTACACAGTGACCTGATAAGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp TCCTTGCTTGTGGGTCTCATATCACGGCTTTCCAAAGGAAGGGGACCACAGGAAGCCAGGAACATGAGGTaGCTGAGCGTGAGCAGAAGC +
Preference number: 5 (lower is better)
Translates to: SLLVGLISRLSKGRGPQEARNMR*LSVSRS
Trigger: GCTTCTGCTCACGCTCAGCAACCTCATGTTCCTGGC...TTCCTGTGGTCCCCTTCCTTTGGAAAGCCGTGATATGAGACCCACAAGCAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS GCA 90 bp ATGCCTGTATCAAGGCGGAGCTGCATTACAGAAGGCATGCTTGAATaGACTAGCACGAAGGCCCCATTCAGGGGCTGGAAGTGTACAGAC +
Preference number: 5 (lower is better)
Translates to: MPVSRRSCITEGMLE*TSTKAPFRGWKCTD
Trigger: GTCTGTACACTTCCAGCCCCTGAATGGGGCCTTCGTGCTAGTGCATTCAAGCATGCCTTCTGTAATGCAGCTCCGCCTTGATACAGGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp GTCAGCCTCATCCAAGTGTCTAGGGCCAGCACAGGAGAATGCTCACCAGACTGGTTACAGAAGGCATGCTaGAATGCACTAGCACGAAGG +
Preference number: 5 (lower is better)
Translates to: VSLIQVSRASTGECSPDWLQKAC*NALARR
Trigger: CCTTCGTGCTAGTGCATTCAAGCATGCCTTCTGTAA...CCAGTCTGGTGAGCATTCTCCTGTGCTGGCCCTAGACACTTGGATGAGGCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CAA 90 bp CTTTCCAAAGGAAGGGGACCACAGGAATCCCTTATCTGTATCCCCATCCATAACAGGGAGAGGTACCAGTaGTCTGTCTCCGGGAAGGGC +
Preference number: 5 (lower is better)
Translates to: LSKGRGPQESLICIPIHNRERYQ*SVSGKG
Trigger: GCCCTTCCCGGAGACAGACAACTGGTACCTCTCCCT...GTTATGGATGGGGATACAGATAAGGGATTCCTGTGGTCCCCTTCCTTTGGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CAA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAAAGGGAGAGGTACCAGTaGTCTGTCTCCGGGAAGGGC +
Preference number: 5 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHERERYQ*SVSGKG
Trigger: GCCCTTCCCGGAGACAGACAACTGGTACCTCTCCCT...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS TCA 90 bp TCAAGTTCCAGATGCCCCTGCGATCCATCTGCAAGGACATGGCGATaGCGAGTGTGCCGAGGACAAGTAGTACCTGTTTCAGGATTGTCT +
Preference number: 5 (lower is better)
Translates to: SSSRCPCDPSARTWR*RVCRGQVVPVSGLS
Trigger: AGACAATCCTGAAACAGGTACTACTTGTCCTCGGCACACTCGTCATCGCCATGTCCTTGCAGATGGATCGCAGGGGCATCTGGAACTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS-3UTR CAA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAAGCAGGGTGGGAGATGTaGACTGAGGTGTTGTCCAGC +
Preference number: 5 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHEAGWEM*TEVLSS
Trigger: GCTGGACAACACCTCAGTCAACATCTCCCACCCTGC...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCAGGGTGGGAGATGTaGACTGAGGTGTTGTCCAGC +
Preference number: 5 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPAGWEM*TEVLSS
Trigger: GCTGGACAACACCTCAGTCAACATCTCCCACCCTGC...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CTCATCCCGATCATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACAGCAGGGTGGGAGATGTaGACTGAGGTGTTGTCCAGC +
Preference number: 5 (lower is better)
Translates to: LIPIIPADLVVTRELLQTAGWEM*TEVLSS
Trigger: GCTGGACAACACCTCAGTCAACATCTCCCACCCTGC...TGTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGGGATGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp TGCAAACAGGCCCAGGACCCAGCTTTTTCCTCTCGTGGTGGCAGAAGAAATGCTCAGTTGAGTGAAGTGTaGAAGCTGAGGAAAGGGGAG +
Preference number: 5 (lower is better)
Translates to: CKQAQDPAFSSRGGRRNAQLSEV*KLRKGE
Trigger: CTCCCCTTTCCTCAGCTTCAACACTTCACTCAACTG...AGCATTTCTTCTGCCACCACGAGAGGAAAAAGCTGGGTCCTGGGCCTGTTTGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp GGCCTTGGACCCCTTAAGAGAGAAGGGAACACTAGCGAGCATTGTGTGCCTTCTAAGGCTGTGGTGCAGTaGAGTGAAGTGTTGAAGCTG +
Preference number: 5 (lower is better)
Translates to: GLGPLKREGNTSEHCVPSKAVVQ*SEVLKL
Trigger: CAGCTTCAACACTTCACTCAACTGCACCACAGCCTT...AGAAGGCACACAATGCTCGCTAGTGTTCCCTTCTCTCTTAAGGGGTCCAAGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CAA 90 bp TCTGGAGAAAGAAGCCAAGCGTCTCAGGACAATTTTATTCAGATGGAAACCTGGGTCTGCGCTGTGCTGTaGTCGGTGCAGCTCCACCCA +
Preference number: 5 (lower is better)
Translates to: SGERSQASQDNFIQMETWVCAVL*SVQLHP
Trigger: TGGGTGGAGCTGCACCGACAACAGCACAGCGCAGAC...CCAGGTTTCCATCTGAATAAAATTGTCCTGAGACGCTTGGCTTCTTTCTCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CAA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCAGGAACATGAGGTaGCTGAGCGTGAGCAGAAGC +
Preference number: 5 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPARNMR*LSVSRS
Trigger: GCTTCTGCTCACGCTCAGCAACCTCATGTTCCTGGC...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp GGTGTCCATGAACCAGCCTTATCAGGTCACTGTGTACAACTCATCCCGATCATTGCCAGGAACATGAGGTaGCTGAGCGTGAGCAGAAGC +
Preference number: 5 (lower is better)
Translates to: GVHEPALSGHCVQLIPIIARNMR*LSVSRS
Trigger: GCTTCTGCTCACGCTCAGCAACCTCATGTTCCTGGC...AATGATCGGGATGAGTTGTACACAGTGACCTGATAAGGCTGGTTCATGGACACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS GCA 90 bp ACTCCTGCCCAGGTCCCGGTGGACAGCGCTTTGGGACAGCTGGATTaGAGAGGTATCATAAGTCTGGTTTGGGTTGTTTTGTATAAGATG +
Preference number: 5 (lower is better)
Translates to: TPAQVPVDSALGQLD*RGIISLVWVVLYKM
Trigger: CATCTTATACAAAACAACCCAAACCAGACTTATGATACCTCTGCAATCCAGCTGTCCCAAAGCGCTGTCCACCGGGACCTGGGCAGGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp ACTTCTGCAAACAGGCCCAGGACCCAGCTTTTTCCTCTCGTGGTGGCAGAAGAATTACAGAAGGCATGCTaGAATGCACTAGCACGAAGG +
Preference number: 5 (lower is better)
Translates to: TSANRPRTQLFPLVVAEELQKAC*NALARR
Trigger: CCTTCGTGCTAGTGCATTCAAGCATGCCTTCTGTAA...TTCTTCTGCCACCACGAGAGGAAAAAGCTGGGTCCTGGGCCTGTTTGCAGAAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp TCCCCATGCCAAGGCAGGATGGCATTAAGGGTACAGGATGTCAGAGACAGTGAGTTTGTGACCTCTGTCTaGTTAGTCCTCAGGACGATG +
Preference number: 5 (lower is better)
Translates to: SPCQGRMALRVQDVRDSEFVTSV*LVLRTM
Trigger: CATCGTCCTGAGGACTAACAAGACAGAGGTCACAAA...CTCACTGTCTCTGACATCCTGTACCCTTAATGCCATCCTGCCTTGGCATGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CAA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTAGCCAGGAACATGAGGTaGCTGAGCGTGAGCAGAAGC +
Preference number: 5 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALARNMR*LSVSRS
Trigger: GCTTCTGCTCACGCTCAGCAACCTCATGTTCCTGGC...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCGTACCTGTTTCAGGATaGTCTTCAGACGGGCCATGC +
Preference number: 5 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPAVPVSG*SSDGPC
Trigger: GCATGGCCCGTCTGAAGACAATCCTGAAACAGGTAC...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS-3UTR CAA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATAGATGTAGGCACAGGTaGGAACAAAGCCCTTCACCT +
Preference number: 5 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHRCRHR*EQSPSP
Trigger: AGGTGAAGGGCTTTGTTCCAACCTGTGCCTACATCT...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp TACCAGCTCAGTGACCCCAGGAGACCAGAAAGATTGGGCTGGGGATCCAGAACCCTGGTTTGGGTTGTTTaGTATAAGATGATGGATGGT +
Preference number: 5 (lower is better)
Translates to: YQLSDPRRPERLGWGSRTLVWVV*YKMMDG
Trigger: ACCATCCATCATCTTATACAAAACAACCCAAACCAG...GGTTCTGGATCCCCAGCCCAATCTTTCTGGTCTCCTGGGGTCACTGAGCTGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025010.14
CDS-3UTR CAA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCCAGTTGAGTGAAGTGTaGAAGCTGAGGAAAGGGGAG +
Preference number: 5 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPAQLSEV*KLRKGE
Trigger: CTCCCCTTTCCTCAGCTTCAACACTTCACTCAACTG...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp TCAGGTGTCCATGAACCAGCCTTATCAGGTCACTGTGTACAACTCATCCCGATCAAGGCTGTGGTGCAGTaGAGTGAAGTGTTGAAGCTG +
Preference number: 5 (lower is better)
Translates to: SGVHEPALSGHCVQLIPIKAVVQ*SEVLKL
Trigger: CAGCTTCAACACTTCACTCAACTGCACCACAGCCTT...GATCGGGATGAGTTGTACACAGTGACCTGATAAGGCTGGTTCATGGACACCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAAGTACCTGTTTCAGGATaGTCTTCAGACGGGCCATGC +
Preference number: 5 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHEVPVSG*SSDGPC
Trigger: GCATGGCCCGTCTGAAGACAATCCTGAAACAGGTAC...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS TCA 90 bp CTACATACTGTAAAGACAGCTTTAGCAGTAAAGCCCACTGTCACATaGGGTTCAGCCAGGCTCTCAAATGTCACTTGTAACCACCGGCCC +
Preference number: 5 (lower is better)
Translates to: LHTVKTALAVKPTVT*GSARLSNVTCNHRP
Trigger: GGGCCGGTGGTTACAAGTGACATTTGAGAGCCTGGCTGAACCTCATGTGACAGTGGGCTTTACTGCTAAAGCTGTCTTTACAGTATGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 90 bp TGTAGTAGTAATTGTCACTGGTCATCATTGAAGTATACATGGCGATaGCAACGGAAGCCATGGAGATGCCAGGCAGGAGGTAGAAGACCC +
Preference number: 5 (lower is better)
Translates to: CSSNCHWSSLKYTWR*QRKPWRCQAGGRRP
Trigger: GGGTCTTCTACCTCCTGCCTGGCATCTCCATGGCTTCCGTTGGCATCGCCATGTATACTTCAATGATGACCAGTGACAATTACTACTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS CCA 90 bp TGTGGGTGTAGTAGTAATTGTCACTGGTCATCATTGAAGTATACATaGCGATGCCAACGGAAGCCATGGAGATGCCAGGCAGGAGGTAGA +
Preference number: 5 (lower is better)
Translates to: CGCSSNCHWSSLKYT*RCQRKPWRCQAGGR
Trigger: TCTACCTCCTGCCTGGCATCTCCATGGCTTCCGTTGGCATCGCCATGTATACTTCAATGATGACCAGTGACAATTACTACTACACCCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS-3UTR CAA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATTTACAGAAGGCATGCTaGAATGCACTAGCACGAAGG +
Preference number: 5 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHLQKAC*NALARR
Trigger: CCTTCGTGCTAGTGCATTCAAGCATGCCTTCTGTAA...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp GCACCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATTTTGTGACCTCTGTCTaGTTAGTCCTCAGGACGATG +
Preference number: 5 (lower is better)
Translates to: APLSLVLAEEVIRVSGVHFVTSV*LVLRTM
Trigger: CATCGTCCTGAGGACTAACAAGACAGAGGTCACAAA...ATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCACAGTTGAGTGAAGTGTaGAAGCTGAGGAAAGGGGAG +
Preference number: 5 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPQLSEV*KLRKGE
Trigger: CTCCCCTTTCCTCAGCTTCAACACTTCACTCAACTG...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAAAGGCTGTGGTGCAGTaGAGTGAAGTGTTGAAGCTG +
Preference number: 5 (lower is better)
Translates to: LSLVLAEEVIRVSGVHEPKAVVQ*SEVLKL
Trigger: CAGCTTCAACACTTCACTCAACTGCACCACAGCCTT...TGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp TCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTTGGGACAGCTGGATaGCAGAGGTATCATAAGTCT +
Preference number: 5 (lower is better)
Translates to: SLVLAEEVIRVSGVHEPAFGTAG*QRYHKS
Trigger: AGACTTATGATACCTCTGCAATCCAGCTGTCCCAAA...GGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAATTACAGAAGGCATGCTaGAATGCACTAGCACGAAGG +
Preference number: 5 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHELQKAC*NALARR
Trigger: CCTTCGTGCTAGTGCATTCAAGCATGCCTTCTGTAA...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAATTTGTGACCTCTGTCTaGTTAGTCCTCAGGACGATG +
Preference number: 5 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHEFVTSV*LVLRTM
Trigger: CATCGTCCTGAGGACTAACAAGACAGAGGTCACAAA...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp AGCCTTATCAGGTCACTGTGTACAACTCATCCCGATCATTCCTGCAGATCTGGTTTTGTGACCTCTGTCTaGTTAGTCCTCAGGACGATG +
Preference number: 5 (lower is better)
Translates to: SLIRSLCTTHPDHSCRSGFVTSV*LVLRTM
Trigger: CATCGTCCTGAGGACTAACAAGACAGAGGTCACAAA...ACCAGATCTGCAGGAATGATCGGGATGAGTTGTACACAGTGACCTGATAAGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTAAAGGCTGTGGTGCAGTaGAGTGAAGTGTTGAAGCTG +
Preference number: 5 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALKAVVQ*SEVLKL
Trigger: CAGCTTCAACACTTCACTCAACTGCACCACAGCCTT...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 90 bp AGCGCTTTGGGACAGCTGGATTGCAGAGGTATCATAAGTCTGGTTTaGGTTGTTTTGTATAAGATGATGGATGGTCACACTCCATGGCCT +
Preference number: 5 (lower is better)
Translates to: SALGQLDCRGIISLV*VVLYKMMDGHTPWP
Trigger: AGGCCATGGAGTGTGACCATCCATCATCTTATACAAAACAACCCAAACCAGACTTATGATACCTCTGCAATCCAGCTGTCCCAAAGCGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CTCATCCCGATCATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACATTTGGGACAGCTGGATaGCAGAGGTATCATAAGTCT +
Preference number: 5 (lower is better)
Translates to: LIPIIPADLVVTRELLQTFGTAG*QRYHKS
Trigger: AGACTTATGATACCTCTGCAATCCAGCTGTCCCAAA...TGTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGGGATGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS GCA 90 bp GTGGCAGAAGAAATGCTGCACTACCAGCCAGTAGGATGTGCCAAATaGTGTGGGTGTAGTAGTAATTGTCACTGGTCATCATTGAAGTAT +
Preference number: 5 (lower is better)
Translates to: VAEEMLHYQPVGCAK*CGCSSNCHWSSLKY
Trigger: ATACTTCAATGATGACCAGTGACAATTACTACTACACCCACAGCATTTGGCACATCCTACTGGCTGGTAGTGCAGCATTTCTTCTGCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS-3UTR CAA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTATTTGGGACAGCTGGATaGCAGAGGTATCATAAGTCT +
Preference number: 5 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALFGTAG*QRYHKS
Trigger: AGACTTATGATACCTCTGCAATCCAGCTGTCCCAAA...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CCTCTCTCGCTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACTGGTTTGGGTTGTTTaGTATAAGATGATGGATGGT +
Preference number: 5 (lower is better)
Translates to: PLSLVLAEEVIRVSGVHELVWVV*YKMMDG
Trigger: ACCATCCATCATCTTATACAAAACAACCCAAACCAG...TTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAGCGAGAGAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CTCATCCCGATCATTCCTGCAGATCTGGTAGTGACAAGGGAACTTCTGCAAACACTGGTTTGGGTTGTTTaGTATAAGATGATGGATGGT +
Preference number: 5 (lower is better)
Translates to: LIPIIPADLVVTRELLQTLVWVV*YKMMDG
Trigger: ACCATCCATCATCTTATACAAAACAACCCAAACCAG...TGTTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGGGATGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237058.2
CDS-3UTR CAA 90 bp CTTGTCCTAGCTGAAGAGGTCATTAGAGTTTCAGGTGTCCATGAACCAGCCTTACTGGTTTGGGTTGTTTaGTATAAGATGATGGATGGT +
Preference number: 5 (lower is better)
Translates to: LVLAEEVIRVSGVHEPALLVWVV*YKMMDG
Trigger: ACCATCCATCATCTTATACAAAACAACCCAAACCAG...TAAGGCTGGTTCATGGACACCTGAAACTCTAATGACCTCTTCAGCTAGGACAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS TCA 72 bp CGGAGGCCGAGCCAGGAGCAGCAGCAGCAGCAGCAGTaGCCCGGTCGCTGCCTCCCGCGCTGTGCCCCCGGC +
Preference number: 6 (lower is better)
Translates to: RRPSQEQQQQQQ*PGRCLPRCAPG
Trigger: GCCGGGGGCACAGCGCGGGAGGCAGCGACCGGGTCACTGCTGCTGCTGCTGCTGCTCCTGGCTCGGCCTCCG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CAA 90 bp GGGGCCTGGGAGAAGTGTTCAGATACCAGTCCAGCCTCGCTCTCCTaGCTGTTGCTGGCGGCGGCAGGCGGAGGCCGAGCCAGGAGCAGC +
Preference number: 6 (lower is better)
Translates to: GAWEKCSDTSPASLS*LLLAAAGGGRARSS
Trigger: GCTGCTCCTGGCTCGGCCTCCGCCTGCCGCCGCCAGCAACAGCAAGGAGAGCGAGGCTGGACTGGTATCTGAACACTTCTCCCAGGCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp GCGCTGCTGCCCTCTGCTGGGCTACGGTCTGCGCTGTaGTGTTGTCGGTGCAGCTCCACCCACGCCAACCTG +
Preference number: 6 (lower is better)
Translates to: ALLPSAGLRSAL*CCRCSSTHANL
Trigger: CAGGTTGGCGTGGGTGGAGCTGCACCGACAACAGCACAGCGCAGACCGTAGCCCAGCAGAGGGCAGCAGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp GTTCAGATACCAGTCCAGCCTCGCTCTCCTTGCTGTTaGTGGCGGCGGCAGGCGGAGGCCGAGCCAGGAGCA +
Preference number: 6 (lower is better)
Translates to: VQIPVQPRSPCC*WRRQAEAEPGA
Trigger: TGCTCCTGGCTCGGCCTCCGCCTGCCGCCGCCAGCAACAGCAAGGAGAGCGAGGCTGGACTGGTATCTGAAC
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CAA 72 bp GCTGCCCTCTGCTGGGCTACGGTCTGCGCTGTGCTGTaGTCGGTGCAGCTCCACCCACGCCAACCTGCCTTG +
Preference number: 6 (lower is better)
Translates to: AALCWATVCAVL*SVQLHPRQPAL
Trigger: CAAGGCAGGTTGGCGTGGGTGGAGCTGCACCGACAACAGCACAGCGCAGACCGTAGCCCAGCAGAGGGCAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CAA 90 bp AGAAGCGCTGCTGCCCTCTGCTGGGCTACGGTCTGCGCTGTGCTGTaGTCGGTGCAGCTCCACCCACGCCAACCTGCCTTGCAGCTGCAG +
Preference number: 6 (lower is better)
Translates to: RSAAALCWATVCAVL*SVQLHPRQPALQLQ
Trigger: CTGCAGCTGCAAGGCAGGTTGGCGTGGGTGGAGCTGCACCGACAACAGCACAGCGCAGACCGTAGCCCAGCAGAGGGCAGCAGCGCTTCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp TCTTCGTCAGTGCATGAGGGACTTCCCTGGGACACGTaGAGCAGCCAGCGGAGCAGCACAGTGTCCGGGGGC +
Preference number: 6 (lower is better)
Translates to: SSSVHEGLPWDT*SSQRSSTVSGG
Trigger: GCCCCCGGACACTGTGCTGCTCCGCTGGCTGCTGCACGTGTCCCAGGGAAGTCCCTCATGCACTGACGAAGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp GGAGACAGAAGGGGCCACTGTCCACCCTGCTACTCCTaGCCAGGTCCCGGTGGACAGCGCTTTGGGACAGCT +
Preference number: 6 (lower is better)
Translates to: GDRRGHCPPCYS*PGPGGQRFGTA
Trigger: AGCTGTCCCAAAGCGCTGTCCACCGGGACCTGGGCAGGAGTAGCAGGGTGGACAGTGGCCCCTTCTGTCTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp TCTGCTGGGCTACGGTCTGCGCTGTGCTGTTGTCGGTaGAGCTCCACCCACGCCAACCTGCCTTGCAGCTGC +
Preference number: 6 (lower is better)
Translates to: SAGLRSALCCCR*SSTHANLPCSC
Trigger: GCAGCTGCAAGGCAGGTTGGCGTGGGTGGAGCTGCACCGACAACAGCACAGCGCAGACCGTAGCCCAGCAGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 72 bp TCTAGGCAGGGTGGTTGCCCCCACTGTGACACGTACTaGGCAGCCGGGGCTCACACTGGACACACAGCCCTG +
Preference number: 6 (lower is better)
Translates to: SRQGGCPHCDTY*AAGAHTGHTAL
Trigger: CAGGGCTGTGTGTCCAGTGTGAGCCCCGGCTGCCCAGTACGTGTCACAGTGGGGGCAACCACCCTGCCTAGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CAA 72 bp GAGAAGTGTTCAGATACCAGTCCAGCCTCGCTCTCCTaGCTGTTGCTGGCGGCGGCAGGCGGAGGCCGAGCC +
Preference number: 6 (lower is better)
Translates to: EKCSDTSPASLS*LLLAAAGGGRA
Trigger: GGCTCGGCCTCCGCCTGCCGCCGCCAGCAACAGCAAGGAGAGCGAGGCTGGACTGGTATCTGAACACTTCTC
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp AGAAGTGTTCAGATACCAGTCCAGCCTCGCTCTCCTTaGTGTTGCTGGCGGCGGCAGGCGGAGGCCGAGCCA +
Preference number: 6 (lower is better)
Translates to: RSVQIPVQPRSP*CCWRRQAEAEP
Trigger: TGGCTCGGCCTCCGCCTGCCGCCGCCAGCAACAGCAAGGAGAGCGAGGCTGGACTGGTATCTGAACACTTCT
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp TGTCCGGGGGCACGCGGAAGTGGAAGAGCCGGGTGCTaGCATACCAGCTGTAGAAGGACAGCTTCTGTGGGG +
Preference number: 6 (lower is better)
Translates to: CPGARGSGRAGC*HTSCRRTASVG
Trigger: CCCCACAGAAGCTGTCCTTCTACAGCTGGTATGGCAGCACCCGGCTCTTCCACTTCCGCGTGCCCCCGGACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp AGGTTGCTGAGCGTGAGCAGAAGCGCTGCTGCCCTCTaGTGGGCTACGGTCTGCGCTGTGCTGTTGTCGGTG +
Preference number: 6 (lower is better)
Translates to: RLLSVSRSAAAL*WATVCAVLLSV
Trigger: CACCGACAACAGCACAGCGCAGACCGTAGCCCAGCAGAGGGCAGCAGCGCTTCTGCTCACGCTCAGCAACCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CAA 72 bp CAGGCAGGAGGTAGAAGACCCAGCGCTGCCAGGAGGTaGGGTAGCACTGTCCCCGGTGCCCACAGCGGTATA +
Preference number: 6 (lower is better)
Translates to: QAGGRRPSAARR*GSTVPGAHSGI
Trigger: TATACCGCTGTGGGCACCGGGGACAGTGCTACCCAACCTCCTGGCAGCGCTGGGTCTTCTACCTCCTGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS CAA 90 bp TGGAGATGCCAGGCAGGAGGTAGAAGACCCAGCGCTGCCAGGAGGTaGGGTAGCACTGTCCCCGGTGCCCACAGCGGTATATCCACATGG +
Preference number: 6 (lower is better)
Translates to: WRCQAGGRRPSAARR*GSTVPGAHSGISTW
Trigger: CCATGTGGATATACCGCTGTGGGCACCGGGGACAGTGCTACCCAACCTCCTGGCAGCGCTGGGTCTTCTACCTCCTGCCTGGCATCTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS GCA 72 bp CAGTGTCCGGGGGCACGCGGAAGTGGAAGAGCCGGGTaGTGCCATACCAGCTGTAGAAGGACAGCTTCTGTG +
Preference number: 6 (lower is better)
Translates to: QCPGARGSGRAG*CHTSCRRTASV
Trigger: CACAGAAGCTGTCCTTCTACAGCTGGTATGGCAGCACCCGGCTCTTCCACTTCCGCGTGCCCCCGGACACTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp ACTGGGCAGCCGGGGCTCACACTGGACACACAGCCCTaGAGTTCCAACCGAAGCTCCTGGGTGTATTCAGGG +
Preference number: 6 (lower is better)
Translates to: TGQPGLTLDTQP*SSNRSSWVYSG
Trigger: CCCTGAATACACCCAGGAGCTTCGGTTGGAACTGCAGGGCTGTGTGTCCAGTGTGAGCCCCGGCTGCCCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp AGTCAGCACCCTCTGGAAGTTTCTAGGCAGGGTGGTTaGCCCCACTGTGACACGTACTGGGCAGCCGGGGCT +
Preference number: 6 (lower is better)
Translates to: SQHPLEVSRQGG*PHCDTYWAAGA
Trigger: AGCCCCGGCTGCCCAGTACGTGTCACAGTGGGGGCAACCACCCTGCCTAGAAACTTCCAGAGGGTGCTGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 72 bp AACCACCGGCCCCAGGGTGGAGAGGACAGTAGCAAATaGCAGGATGGAGCGAGGCCAGTGCAAGTCAGCACC +
Preference number: 6 (lower is better)
Translates to: NHRPQGGEDSSK*QDGARPVQVST
Trigger: GGTGCTGACTTGCACTGGCCTCGCTCCATCCTGCCATTTGCTACTGTCCTCTCCACCCTGGGGCCGGTGGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 72 bp CCACTGTCCACCCTGCTACTCCTGCCCAGGTCCCGGTaGACAGCGCTTTGGGACAGCTGGATTGCAGAGGTA +
Preference number: 6 (lower is better)
Translates to: PLSTLLLLPRSR*TALWDSWIAEV
Trigger: TACCTCTGCAATCCAGCTGTCCCAAAGCGCTGTCCACCGGGACCTGGGCAGGAGTAGCAGGGTGGACAGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 72 bp AGGCAGGAGGTAGAAGACCCAGCGCTGCCAGGAGGTTaGGTAGCACTGTCCCCGGTGCCCACAGCGGTATAT +
Preference number: 6 (lower is better)
Translates to: RQEVEDPALPGG*VALSPVPTAVY
Trigger: ATATACCGCTGTGGGCACCGGGGACAGTGCTACCCAACCTCCTGGCAGCGCTGGGTCTTCTACCTCCTGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS GCA 72 bp GATAGTTCAGGAGACAGAAGGGGCCACTGTCCACCCTaGTACTCCTGCCCAGGTCCCGGTGGACAGCGCTTT +
Preference number: 6 (lower is better)
Translates to: DSSGDRRGHCPP*YSCPGPGGQRF
Trigger: AAAGCGCTGTCCACCGGGACCTGGGCAGGAGTAGCAGGGTGGACAGTGGCCCCTTCTGTCTCCTGAACTATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp GCTCCACCCACGCCAACCTGCCTTGCAGCTGCAGCCTaGGTACACATAGCCGTATCTACGGAGCAGGAGACA +
Preference number: 6 (lower is better)
Translates to: APPTPTCLAAAA*VHIAVSTEQET
Trigger: TGTCTCCTGCTCCGTAGATACGGCTATGTGTACGCAGGCTGCAGCTGCAAGGCAGGTTGGCGTGGGTGGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp TGTGCTGTTGTCGGTGCAGCTCCACCCACGCCAACCTaGCTTGCAGCTGCAGCCTGCGTACACATAGCCGTA +
Preference number: 6 (lower is better)
Translates to: CAVVGAAPPTPT*LAAAACVHIAV
Trigger: TACGGCTATGTGTACGCAGGCTGCAGCTGCAAGGCAGGTTGGCGTGGGTGGAGCTGCACCGACAACAGCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 72 bp CAGGATGGAGCGAGGCCAGTGCAAGTCAGCACCCTCTaGAAGTTTCTAGGCAGGGTGGTTGCCCCCACTGTG +
Preference number: 6 (lower is better)
Translates to: QDGARPVQVSTL*KFLGRVVAPTV
Trigger: CACAGTGGGGGCAACCACCCTGCCTAGAAACTTCCAGAGGGTGCTGACTTGCACTGGCCTCGCTCCATCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp TGTTGTCGGTGCAGCTCCACCCACGCCAACCTGCCTTaGAGCTGCAGCCTGCGTACACATAGCCGTATCTAC +
Preference number: 6 (lower is better)
Translates to: CCRCSSTHANLP*SCSLRTHSRIY
Trigger: GTAGATACGGCTATGTGTACGCAGGCTGCAGCTGCAAGGCAGGTTGGCGTGGGTGGAGCTGCACCGACAACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp GGTCCCATCAAGTTCCAGATGCCCCTGCGATCCATCTaGAAGGACATGGCGATGACGAGTGTGCCGAGGACA +
Preference number: 6 (lower is better)
Translates to: GPIKFQMPLRSI*KDMAMTSVPRT
Trigger: TGTCCTCGGCACACTCGTCATCGCCATGTCCTTGCAGATGGATCGCAGGGGCATCTGGAACTTGATGGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CAA 72 bp CCTGCTACTCCTGCCCAGGTCCCGGTGGACAGCGCTTaGGGACAGCTGGATTGCAGAGGTATCATAAGTCTG +
Preference number: 6 (lower is better)
Translates to: PATPAQVPVDSA*GQLDCRGIISL
Trigger: CAGACTTATGATACCTCTGCAATCCAGCTGTCCCAAAGCGCTGTCCACCGGGACCTGGGCAGGAGTAGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CAA 90 bp ACTGTCCACCCTGCTACTCCTGCCCAGGTCCCGGTGGACAGCGCTTaGGGACAGCTGGATTGCAGAGGTATCATAAGTCTGGTTTGGGTT +
Preference number: 6 (lower is better)
Translates to: TVHPATPAQVPVDSA*GQLDCRGIISLVWV
Trigger: AACCCAAACCAGACTTATGATACCTCTGCAATCCAGCTGTCCCAAAGCGCTGTCCACCGGGACCTGGGCAGGAGTAGCAGGGTGGACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS TCA 72 bp ATAGCGGAAATGCACTGTGATCTCTTCGTCAGTGCATaGGGGACTTCCCTGGGACACGTGCAGCAGCCAGCG +
Preference number: 6 (lower is better)
Translates to: IAEMHCDLFVSA*GTSLGHVQQPA
Trigger: CGCTGGCTGCTGCACGTGTCCCAGGGAAGTCCCTCATGCACTGACGAAGAGATCACAGTGCATTTCCGCTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS TCA 72 bp AGATGCCCCTGCGATCCATCTGCAAGGACATGGCGATaGCGAGTGTGCCGAGGACAAGTAGTACCGTGGAGA +
Preference number: 6 (lower is better)
Translates to: RCPCDPSARTWR*RVCRGQVVPWR
Trigger: TCTCCACGGTACTACTTGTCCTCGGCACACTCGTCATCGCCATGTCCTTGCAGATGGATCGCAGGGGCATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CAA 90 bp AGGAACCAGTCCCCAGGGGCAGGGTGGGAGATGTTGACTGAGGTGTaGTCCAGCATCAAGGTGCTCAACAATGCCCTGATATGGAAGGAG +
Preference number: 6 (lower is better)
Translates to: RNQSPGAGWEMLTEV*SSIKVLNNALIWKE
Trigger: CTCCTTCCATATCAGGGCATTGTTGAGCACCTTGATGCTGGACAACACCTCAGTCAACATCTCCCACCCTGCCCCTGGGGACTGGTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp GAGCCTCCGCTGTCCATGCCTGTATCAAGGCGGAGCTaGATTACAGAAGGCATGCTTGAATGCACTAGCACG +
Preference number: 6 (lower is better)
Translates to: EPPLSMPVSRRS*ITEGMLECTST
Trigger: CGTGCTAGTGCATTCAAGCATGCCTTCTGTAATGCAGCTCCGCCTTGATACAGGCATGGACAGCGGAGGCTC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp GTAGTACCTGTTTCAGGATTGTCTTCAGACGGGCCATaGAAAGAATGGTCACCCAGGTGGACGCCCCAGAGC +
Preference number: 6 (lower is better)
Translates to: VVPVSGLSSDGP*KEWSPRWTPQS
Trigger: GCTCTGGGGCGTCCACCTGGGTGACCATTCTTTGCATGGCCCGTCTGAAGACAATCCTGAAACAGGTACTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS CCA 72 bp GCAGCGTCTGTGGGAGGGGAACATCAGGCTCTAGGGTaGAGACTTCAACCACCCTCATTACCAGCATATCAG +
Preference number: 6 (lower is better)
Translates to: AASVGGEHQALG*RLQPPSLPAYQ
Trigger: CTGATATGCTGGTAATGAGGGTGGTTGAAGTCTCCACCCTAGAGCCTGATGTTCCCCTCCCACAGACGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 72 bp GTGTACAGACACCACATCTGTGTCCTCCCTCAGGACTaGATAGTTCAGGAGACAGAAGGGGCCACTGTCCAC +
Preference number: 6 (lower is better)
Translates to: VYRHHICVLPQD*IVQETEGATVH
Trigger: GTGGACAGTGGCCCCTTCTGTCTCCTGAACTATCCAGTCCTGAGGGAGGACACAGATGTGGTGTCTGTACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 72 bp GTTTCAGGATTGTCTTCAGACGGGCCATGCAAAGAATaGTCACCCAGGTGGACGCCCCAGAGCCCAGAAAGT +
Preference number: 6 (lower is better)
Translates to: VSGLSSDGPCKE*SPRWTPQSPES
Trigger: ACTTTCTGGGCTCTGGGGCGTCCACCTGGGTGACCATTCTTTGCATGGCCCGTCTGAAGACAATCCTGAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS TCA 72 bp AGCCCAGAAAGTCGCAATACTGTAGCGTGTCATAACTaGGGATGCACAACACTGCCTCCCCGGGTTGGTCAC +
Preference number: 6 (lower is better)
Translates to: SPESRNTVACHN*GCTTLPPRVGH
Trigger: GTGACCAACCCGGGGAGGCAGTGTTGTGCATCCTCAGTTATGACACGCTACAGTATTGCGACTTTCTGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS TCA 72 bp AGATGCCCCTGCGATCCATCTGCAAGGACATGGCGATaGCGAGTGTGCCGAGGACAAGTAGTACCTGTTTCA +
Preference number: 6 (lower is better)
Translates to: RCPCDPSARTWR*RVCRGQVVPVS
Trigger: TGAAACAGGTACTACTTGTCCTCGGCACACTCGTCATCGCCATGTCCTTGCAGATGGATCGCAGGGGCATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS TCA 72 bp TGTTCAGATACCAGTCCAGCCTCTACAGGGAAAAGGTaGCAATCAGGTAGGTGGGGCAGGCACACAGGAAGC +
Preference number: 6 (lower is better)
Translates to: CSDTSPASTGKR*QSGRWGRHTGS
Trigger: GCTTCCTGTGTGCCTGCCCCACCTACCTGATTGTCACCTTTTCCCTGTAGAGGCTGGACTGGTATCTGAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128597.3
CDS GCA 72 bp TGCCTGTATCAAGGCGGAGCTGCATTACAGAAGGCATaGTTGAATGCACTAGCACGAAGGCCCCATTCAGGG +
Preference number: 6 (lower is better)
Translates to: CLYQGGAALQKA*LNALARRPHSG
Trigger: CCCTGAATGGGGCCTTCGTGCTAGTGCATTCAAGCATGCCTTCTGTAATGCAGCTCCGCCTTGATACAGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CAA 72 bp GTCATAACTGAGGATGCACAACACTGCCTCCCCGGGTaGGTCACAGGCGTGGTAGAACGTGGAGAAGAACAT +
Preference number: 6 (lower is better)
Translates to: VITEDAQHCLPG*VTGVVERGEEH
Trigger: ATGTTCTTCTCCACGTTCTACCACGCCTGTGACCAACCCGGGGAGGCAGTGTTGTGCATCCTCAGTTATGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS CAA 90 bp TGTCCATGCCTGTATCAAGGCGGAGCTGCATTACAGAAGGCATGCTaGAATGCACTAGCACGAAGGCCCCATTCAGGGGCTGGAAGTGTA +
Preference number: 6 (lower is better)
Translates to: CPCLYQGGAALQKAC*NALARRPHSGAGSV
Trigger: TACACTTCCAGCCCCTGAATGGGGCCTTCGTGCTAGTGCATTCAAGCATGCCTTCTGTAATGCAGCTCCGCCTTGATACAGGCATGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 72 bp TTGTCCAGCATCAAGGTGCTCAACAATGCCCTGATATaGAAGGAGGCGTGGCTCAAGGTGTTGTCAGGGAAG +
Preference number: 6 (lower is better)
Translates to: LSSIKVLNNALI*KEAWLKVLSGK
Trigger: CTTCCCTGACAACACCTTGAGCCACGCCTCCTTCCATATCAGGGCATTGTTGAGCACCTTGATGCTGGACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 72 bp GCCCACAGTCATTCAAACAGGGCACCAGATACAAGATaGTCTCCACGCGAACCACAGCCTGTTCACAATCCT +
Preference number: 6 (lower is better)
Translates to: AHSHSNRAPDTR*SPREPQPVHNP
Trigger: AGGATTGTGAACAGGCTGTGGTTCGCGTGGAGACCATCTTGTATCTGGTGCCCTGTTTGAATGACTGTGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 72 bp GTTGGTCACAGGCGTGGTAGAACGTGGAGAAGAACATaGTGTAAAAGTAGACAGAGGCCTCGACCAGGAAGG +
Preference number: 6 (lower is better)
Translates to: VGHRRGRTWRRT*CKSRQRPRPGR
Trigger: CCTTCCTGGTCGAGGCCTCTGTCTACTTTTACACCATGTTCTTCTCCACGTTCTACCACGCCTGTGACCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS CAA 72 bp CGAGTGTGCCGAGGACAAGTAGTACCTGTTTCAGGATaGTCTTCAGACGGGCCATGCAAAGAATGGTCACCC +
Preference number: 6 (lower is better)
Translates to: RVCRGQVVPVSG*SSDGPCKEWSP
Trigger: GGGTGACCATTCTTTGCATGGCCCGTCTGAAGACAATCCTGAAACAGGTACTACTTGTCCTCGGCACACTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
CDS GCA 72 bp GAAGCTGAGGAAAGGGGAGGCAGCATTCACACAAGCTaGTACCAAGGTGCCATTTGTGACCTCTGTCTTGTT +
Preference number: 6 (lower is better)
Translates to: EAEERGGSIHTS*YQGAICDLCLV
Trigger: AACAAGACAGAGGTCACAAATGGCACCTTGGTAGCAGCTTGTGTGAATGCTGCCTCCCCTTTCCTCAGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS GCA 72 bp AATTGTCACTGGTCATCATTGAAGTATACATGGCGATaGCAACGGAAGCCATGGAGATGCCAGGCAGGAGGT +
Preference number: 6 (lower is better)
Translates to: NCHWSSLKYTWR*QRKPWRCQAGG
Trigger: ACCTCCTGCCTGGCATCTCCATGGCTTCCGTTGGCATCGCCATGTATACTTCAATGATGACCAGTGACAATT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS TCA 72 bp GCTGTGGGTGTAGTAGTAATTGTCACTGGTCATCATTaGAGTATACATGGCGATGCCAACGGAAGCCATGGA +
Preference number: 6 (lower is better)
Translates to: AVGVVVIVTGHH*SIHGDANGSHG
Trigger: TCCATGGCTTCCGTTGGCATCGCCATGTATACTTCAATGATGACCAGTGACAATTACTACTACACCCACAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS GCA 72 bp GAAATGCTGCACTACCAGCCAGTAGGATGTGCCAAATaGTGTGGGTGTAGTAGTAATTGTCACTGGTCATCA +
Preference number: 6 (lower is better)
Translates to: EMLHYQPVGCAK*CGCSSNCHWSS
Trigger: TGATGACCAGTGACAATTACTACTACACCCACAGCATTTGGCACATCCTACTGGCTGGTAGTGCAGCATTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS CCA 72 bp AGTAGTAATTGTCACTGGTCATCATTGAAGTATACATaGCGATGCCAACGGAAGCCATGGAGATGCCAGGCA +
Preference number: 6 (lower is better)
Translates to: SSNCHWSSLKYT*RCQRKPWRCQA
Trigger: TGCCTGGCATCTCCATGGCTTCCGTTGGCATCGCCATGTATACTTCAATGATGACCAGTGACAATTACTACT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS CAA 72 bp TGCTGTGGGTGTAGTAGTAATTGTCACTGGTCATCATaGAAGTATACATGGCGATGCCAACGGAAGCCATGG +
Preference number: 6 (lower is better)
Translates to: CCGCSSNCHWSS*KYTWRCQRKPW
Trigger: CCATGGCTTCCGTTGGCATCGCCATGTATACTTCAATGATGACCAGTGACAATTACTACTACACCCACAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
CDS TCA 72 bp GTAAAGACAGCTTTAGCAGTAAAGCCCACTGTCACATaGGGTTCAGCCAGGCTCTCAAATGTCACTTGTAAC +
Preference number: 6 (lower is better)
Translates to: VKTALAVKPTVT*GSARLSNVTCN
Trigger: GTTACAAGTGACATTTGAGAGCCTGGCTGAACCTCATGTGACAGTGGGCTTTACTGCTAAAGCTGTCTTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CAA 90 bp GGACAGCTGGATTGCAGAGGTATCATAAGTCTGGTTTGGGTTGTTTaGTATAAGATGATGGATGGTCACACTCCATGGCCTACATACTGT +
Preference number: 6 (lower is better)
Translates to: GQLDCRGIISLVWVV*YKMMDGHTPWPTYC
Trigger: ACAGTATGTAGGCCATGGAGTGTGACCATCCATCATCTTATACAAAACAACCCAAACCAGACTTATGATACCTCTGCAATCCAGCTGTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 72 bp GGACAGCTGGATTGCAGAGGTATCATAAGTCTGGTTTaGGTTGTTTTGTATAAGATGATGGATGGTCACACT +
Preference number: 6 (lower is better)
Translates to: GQLDCRGIISLV*VVLYKMMDGHT
Trigger: AGTGTGACCATCCATCATCTTATACAAAACAACCCAAACCAGACTTATGATACCTCTGCAATCCAGCTGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CAA 72 bp GATTGCAGAGGTATCATAAGTCTGGTTTGGGTTGTTTaGTATAAGATGATGGATGGTCACACTCCATGGCCT +
Preference number: 6 (lower is better)
Translates to: DCRGIISLVWVV*YKMMDGHTPWP
Trigger: AGGCCATGGAGTGTGACCATCCATCATCTTATACAAAACAACCCAAACCAGACTTATGATACCTCTGCAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2
CDS CCA 72 bp GTTGTTTTGTATAAGATGATGGATGGTCACACTCCATaGCCTACATACTGTAAAGACAGCTTTAGCAGTAAA +
Preference number: 6 (lower is better)
Translates to: VVLYKMMDGHTP*PTYCKDSFSSK
Trigger: TTTACTGCTAAAGCTGTCTTTACAGTATGTAGGCCATGGAGTGTGACCATCCATCATCTTATACAAAACAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025010.14
ENSMUST00000128597.3
ENSMUST00000235821.2
ENSMUST00000237058.2