RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PGAP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073678

Ensembl transcript IDs: ENSMUST00000097739.5

Found 200 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGAACTGCAATAGCAAATGCTACCTATTTATCAGGTCCAGGGGCTaGAGAGGGGGCTTCGTTCAGAGTGCTTGCTCTTCTGGAGGACCT +
Preference number: 1 (lower is better)
Translates to: QNCNSKCYLFIRSRG*RGGFVQSACSSGGP
Trigger: AGGTCCTCCAGAAGAGCAAGCACTCTGAACGAAGCCCCCTCTCCAGCCCCTGGACCTGATAAATAGGTAGCATTTGCTATTGCAGTTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR GCA 90 bp AATGATCTCTGTACACAGTCTCCCTCAGCAGCCATGAGGAGTGTGTaGTCTCAACGCTCAACCGTAGAAACTGATCTCACTAGACACCCA +
Preference number: 1 (lower is better)
Translates to: NDLCTQSPSAAMRSV*SQRSTVETDLTRHP
Trigger: TGGGTGTCTAGTGAGATCAGTTTCTACGGTTGAGCGTTGAGAGCACACACTCCTCATGGCTGCTGAGGGAGACTGTGTACAGAGATCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 90 bp GGCCTACTTCTCATATGCCTCCTGCGGCTTTCAAGAACTAAAAACTaGGTTCTGCTTCCCTCTACTTCAGTATCTCCCATAGGAGGGACT +
Preference number: 1 (lower is better)
Translates to: GLLLICLLRLSRTKN*VLLPSTSVSPIGGT
Trigger: AGTCCCTCCTATGGGAGATACTGAAGTAGAGGGAAGCAGAACTCAGTTTTTAGTTCTTGAAAGCCGCAGGAGGCATATGAGAAGTAGGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CCA 90 bp TCTATAGTCTTTAGAAGGTTCCTGGGATGGCAGATGAAAGCTAGTTaGTATGTACAGGAGTCCTTAAGACAGAGGCCACAGCATCCCTTC +
Preference number: 1 (lower is better)
Translates to: SIVFRRFLGWQMKAS*YVQESLRQRPQHPF
Trigger: GAAGGGATGCTGTGGCCTCTGTCTTAAGGACTCCTGTACATACCAACTAGCTTTCATCTGCCATCCCAGGAACCTTCTAAAGACTATAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CCA 90 bp AAAATACACAGAAAAGTACACAGAGGTGTATTAGTGCACTGCACATaGCACACAGCACTGGGACAAGCATGCATGTTGAGACAGGGAGAT +
Preference number: 1 (lower is better)
Translates to: KIHRKVHRGVLVHCT*HTALGQACMLRQGD
Trigger: ATCTCCCTGTCTCAACATGCATGCTTGTCCCAGTGCTGTGTGCCATGTGCAGTGCACTAATACACCTCTGTGTACTTTTCTGTGTATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 90 bp CTAATCTGTCAGATACGACAAGTATACCGATGCTACACCACGGGCTaGAACCATGCTTCAACTACGTCCCTCGAGCATTACAAAACTAAT +
Preference number: 1 (lower is better)
Translates to: LICQIRQVYRCYTTG*NHASTTSLEHYKTN
Trigger: ATTAGTTTTGTAATGCTCGAGGGACGTAGTTGAAGCATGGTTTCAGCCCGTGGTGTAGCATCGGTATACTTGTCGTATCTGACAGATTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR GCA 90 bp ATACCAAAAATACACAGAAAAGTACACAGAGGTGTATTAGTGCACTaGACATGGCACACAGCACTGGGACAAGCATGCATGTTGAGACAG +
Preference number: 1 (lower is better)
Translates to: IPKIHRKVHRGVLVH*TWHTALGQACMLRQ
Trigger: CTGTCTCAACATGCATGCTTGTCCCAGTGCTGTGTGCCATGTGCAGTGCACTAATACACCTCTGTGTACTTTTCTGTGTATTTTTGGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CCA 90 bp TCAGTAGACAAACAAATGATGCAAACCCAGAGTTGTTCTGGCCTCTaGAGTTATCCCTTTAACAACCTATCATTGCTACAGGCACTTCTG +
Preference number: 1 (lower is better)
Translates to: SVDKQMMQTQSCSGL*SYPFNNLSLLQALL
Trigger: CAGAAGTGCCTGTAGCAATGATAGGTTGTTAAAGGGATAACTCCAGAGGCCAGAACAACTCTGGGTTTGCATCATTTGTTTGTCTACTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 90 bp ACTCAACAAACACTATGGTACAGTTTATTCCTTTTGACACTCTTCTaGAACAAGGGACTAAAGGGTCTGCCATGTCTAGTACGATGGCTT +
Preference number: 1 (lower is better)
Translates to: TQQTLWYSLFLLTLF*NKGLKGLPCLVRWL
Trigger: AAGCCATCGTACTAGACATGGCAGACCCTTTAGTCCCTTGTTTCAGAAGAGTGTCAAAAGGAATAAACTGTACCATAGTGTTTGTTGAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 90 bp GTCTTAGGAGACACCTCTACAAACCAAGATTTTGCTCTTAATGAGTaGTACAGGTGTGCAATCTATTCAGGCAGTGTTCACATTTTCAGT +
Preference number: 1 (lower is better)
Translates to: VLGDTSTNQDFALNE*YRCAIYSGSVHIFS
Trigger: ACTGAAAATGTGAACACTGCCTGAATAGATTGCACACCTGTATCACTCATTAAGAGCAAAATCTTGGTTTGTAGAGGTGTCTCCTAAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 90 bp TGCATGCTAACTGGTTTGCCTTATACTATATTAGGTTCTAGTGGATaGACACTGGGGACTGAGCAGAGACATAAAGAAAGCAAAAGAAAC +
Preference number: 1 (lower is better)
Translates to: CMLTGLPYTILGSSG*TLGTEQRHKESKRN
Trigger: GTTTCTTTTGCTTTCTTTATGTCTCTGCTCAGTCCCCAGTGTTCATCCACTAGAACCTAATATAGTATAAGGCAAACCAGTTAGCATGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 90 bp GTTAGAGCAGATACATTCCTACTTAGATATGTAAGTGTTGTGCCATaGGAAAATTGTAATTATCCAATGAACTCACTCTTGGGTACTCAA +
Preference number: 1 (lower is better)
Translates to: VRADTFLLRYVSVVP*ENCNYPMNSLLGTQ
Trigger: TTGAGTACCCAAGAGTGAGTTCATTGGATAATTACAATTTTCTCATGGCACAACACTTACATATCTAAGTAGGAATGTATCTGCTCTAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 90 bp TTTAGTCACTGGGAAATCCTTACTATAAACCTAATAACCCTTATTTaGAAATATAAACGCATCTTGATCTGCCACAACACTGACCACAAG +
Preference number: 1 (lower is better)
Translates to: FSHWEILTINLITLI*KYKRILICHNTDHK
Trigger: CTTGTGGTCAGTGTTGTGGCAGATCAAGATGCGTTTATATTTTCAAATAAGGGTTATTAGGTTTATAGTAAGGATTTCCCAGTGACTAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp TTTGACATAAAATCTTTCACCAATCCTGAAGCTTGCCAATATGGCCAGGCTGGCCTGGTCCAAAAGGCATaGGCCGCTTCTCCTTCCAGT +
Preference number: 2 (lower is better)
Translates to: FDIKSFTNPEACQYGQAGLVQKA*AASPSS
Trigger: ACTGGAAGGAGAAGCGGCTCATGCCTTTTGGACCAG...GCCAGCCTGGCCATATTGGCAAGCTTCAGGATTGGTGAAAGATTTTATGTCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACCTCCCTCAGCAGCCATaGGGAGTGTGTGCTCTCAAC +
Preference number: 2 (lower is better)
Translates to: TKNRYTLIPERRLKANIHLPQQP*GVCALN
Trigger: GTTGAGAGCACACACTCCTCATGGCTGCTGAGGGAG...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACGGACCTCACTGTTCCTaGAGGTGGCGCTGTACTGTG +
Preference number: 2 (lower is better)
Translates to: TKNRYTLIPERRLKANIHGPHCS*RWRCTV
Trigger: CACAGTACAGCGCCACCTCCAGGAACAGTGAGGTCC...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CCA 90 bp TTTGACATAAAATCTTTCACCAATCCTGAAGCTTGCCAATATGGCCAGGCTGGCCTAACATGGCTGACGTaGGCAGAACCCTCTGGTTGG +
Preference number: 2 (lower is better)
Translates to: FDIKSFTNPEACQYGQAGLTWLT*AEPSGW
Trigger: CCAACCAGAGGGTTCTGCCCACGTCAGCCATGTTAG...GCCAGCCTGGCCATATTGGCAAGCTTCAGGATTGGTGAAAGATTTTATGTCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACGCTGTACTGTGTCACTaGTCCAAAAGGCATGAGCCG +
Preference number: 2 (lower is better)
Translates to: TKNRYTLIPERRLKANIHAVLCH*SKRHEP
Trigger: CGGCTCATGCCTTTTGGACCAGTGACACAGTACAGC...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp CACATCTCCAGCAAAGTTAGAGCAGATACATTCCTACTTAGATATGTAAGTGTTGTTGGCAGTAGCAGCTaGGAGGCTGTGACACCGTGT +
Preference number: 2 (lower is better)
Translates to: HISSKVRADTFLLRYVSVVGSSS*EAVTPC
Trigger: ACACGGTGTCACAGCCTCTCAGCTGCTACTGCCAAC...AACACTTACATATCTAAGTAGGAATGTATCTGCTCTAACTTTGCTGGAGATGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACACACATTCGGACTGCTaGCCTGACTCCCATTTTCCA +
Preference number: 2 (lower is better)
Translates to: TKNRYTLIPERRLKANIHTHSDC*PDSHFP
Trigger: TGGAAAATGGGAGTCAGGTCAGCAGTCCGAATGTGT...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACTTAGGTTCTAGTGGATaGACACTGGGGACTGAGCAG +
Preference number: 2 (lower is better)
Translates to: TKNRYTLIPERRLKANIHLGSSG*TLGTEQ
Trigger: CTGCTCAGTCCCCAGTGTTCATCCACTAGAACCTAA...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACTGGATCCCCACCTCTTaGGTATTTGTGTGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: TKNRYTLIPERRLKANIHWIPTS*VFVCVC
Trigger: ACACACACACACAAATACTCAAGAGGTGGGGATCCA...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACGACAGGCTCCCTTCATaGCGCATTGTTACTACACTA +
Preference number: 2 (lower is better)
Translates to: TKNRYTLIPERRLKANIHDRLPS*RIVTTL
Trigger: TAGTGTAGTAACAATGCGTCATGAAGGGAGCCTGTC...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp TTTGACATAAAATCTTTCACCAATCCTGAAGCTTGCCAATATGGCCAGGCTGGCATGCCAGTCAGACAGTaGCAGAATCATACAAACCAA +
Preference number: 2 (lower is better)
Translates to: FDIKSFTNPEACQYGQAGMPVRQ*QNHTNQ
Trigger: TTGGTTTGTATGATTCTGTCACTGTCTGACTGGCAT...GCCAGCCTGGCCATATTGGCAAGCTTCAGGATTGGTGAAAGATTTTATGTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR GCA 90 bp AGACAATCAGCCTTGTATGAGTTGGTGAGCATTGTGAAAATGTGTCATATTGACTTTGCCCACCATGGCTaGCAAAAACTGACCAGACTC +
Preference number: 2 (lower is better)
Translates to: RQSALYELVSIVKMCHIDFAHHG*QKLTRL
Trigger: GAGTCTGGTCAGTTTTTGGCAGCCATGGTGGGCAAA...GTCAATATGACACATTTTCACAATGCTCACCAACTCATACAAGGCTGATTGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR GCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACAAACTAAAGGAACACTaGAATTCCCATGCCGCTCCT +
Preference number: 2 (lower is better)
Translates to: TKNRYTLIPERRLKANIHKLKEH*NSHAAP
Trigger: AGGAGCGGCATGGGAATTGCAGTGTTCCTTTAGTTT...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp CAAAAGAAACACCACAGGGAAGGTTTCAACTGTAGTAACCAGACATCTACACCAATGTTGTATTTATGCTaGGACCCTTCCTCCTCAGTA +
Preference number: 2 (lower is better)
Translates to: QKKHHREGFNCSNQTSTPMLYLC*DPSSSV
Trigger: TACTGAGGAGGAAGGGTCTCAGCATAAATACAACAT...TGGTGTAGATGTCTGGTTACTACAGTTGAAACCTTCCCTGTGGTGTTTCTTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CCA 90 bp AGACAATCAGCCTTGTATGAGTTGGTGAGCATTGTGAAAATGTGTCATATTGACAAACTTTGCCCACCATaGCTGCCAAAAACTGACCAG +
Preference number: 2 (lower is better)
Translates to: RQSALYELVSIVKMCHIDKLCPP*LPKTDQ
Trigger: CTGGTCAGTTTTTGGCAGCCATGGTGGGCAAAGTTT...GTCAATATGACACATTTTCACAATGCTCACCAACTCATACAAGGCTGATTGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CCA 90 bp CAAAAGAAACACCACAGGGAAGGTTTCAACTGTAGTAACCAGACATCTACACCAAGTTGTTCTGGCCTCTaGAGTTATCCCTTTAACAAC +
Preference number: 2 (lower is better)
Translates to: QKKHHREGFNCSNQTSTPSCSGL*SYPFNN
Trigger: GTTGTTAAAGGGATAACTCCAGAGGCCAGAACAACT...TGGTGTAGATGTCTGGTTACTACAGTTGAAACCTTCCCTGTGGTGTTTCTTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp TTTGACATAAAATCTTTCACCAATCCTGAAGCTTGCCAATATGGCCAGGCTGGCATTGTAATTATCCAATaGACTCACTCTTGGGTACTC +
Preference number: 2 (lower is better)
Translates to: FDIKSFTNPEACQYGQAGIVIIQ*THSWVL
Trigger: GAGTACCCAAGAGTGAGTTCATTGGATAATTACAAT...GCCAGCCTGGCCATATTGGCAAGCTTCAGGATTGGTGAAAGATTTTATGTCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp AGACAATCAGCCTTGTATGAGTTGGTGAGCATTGTGAAAATGTGTCATATTGACGATACAACCCATTCATaGGCAATACTGGCTAAGCAG +
Preference number: 2 (lower is better)
Translates to: RQSALYELVSIVKMCHIDDTTHS*AILAKQ
Trigger: CTGCTTAGCCAGTATTGCTCATGAATGGGTTGTATC...GTCAATATGACACATTTTCACAATGCTCACCAACTCATACAAGGCTGATTGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp AGGAAACCAGACACAAAAGAACACAGAACAACACACTGTTCTAAATCTTTGAAATCCTGGGATGGCAGATaGAAGCTAGTTGGTATGTAC +
Preference number: 2 (lower is better)
Translates to: RKPDTKEHRTTHCSKSLKSWDGR*KLVGMY
Trigger: GTACATACCAACTAGCTTTCATCTGCCATCCCAGGA...TTTCAAAGATTTAGAACAGTGTGTTGTTCTGTGTTCTTTTGTGTCTGGTTTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp CAGCTAAGGGATACTAAAGTAAATGTGGGTCCATTGGTACTTAAAACTTTTATCACCATTCCTGGGCACTaGGAAGGACATAAGTTCACA +
Preference number: 2 (lower is better)
Translates to: QLRDTKVNVGPLVLKTFITIPGH*EGHKFT
Trigger: TGTGAACTTATGTCCTTCTCAGTGCCCAGGAATGGT...GATAAAAGTTTTAAGTACCAATGGACCCACATTTACTTTAGTATCCCTTAGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp GTGAGTTCTACATTTACTTTATCTGGTAAAGAAGATTTCCCGGAAGGAAGTAATGTGAGTGTGTATCTCTaGGTATGTGTGGCAAATGGC +
Preference number: 2 (lower is better)
Translates to: VSSTFTLSGKEDFPEGSNVSVYL*VCVANG
Trigger: GCCATTTGCCACACATACTCAGAGATACACACTCAC...ATTACTTCCTTCCGGGAAATCTTCTTTACCAGATAAAGTAAATGTAGAACTCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR GCA 90 bp TTTGACATAAAATCTTTCACCAATCCTGAAGCTTGCCAATATGGCCAGGCTGGCTGCCAATGCAGAATCTaGAAGAACATTCTTTTCTTA +
Preference number: 2 (lower is better)
Translates to: FDIKSFTNPEACQYGQAGCQCRI*KNILFL
Trigger: TAAGAAAAGAATGTTCTTGCAGATTCTGCATTGGCA...GCCAGCCTGGCCATATTGGCAAGCTTCAGGATTGGTGAAAGATTTTATGTCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CCA 90 bp CAAAAGAAACACCACAGGGAAGGTTTCAACTGTAGTAACCAGACATCTACACCATGGAATCAACTGCTCTaGTTTACTTCATATTTGTGG +
Preference number: 2 (lower is better)
Translates to: QKKHHREGFNCSNQTSTPWNQLL*FTSYLW
Trigger: CCACAAATATGAAGTAAACCAGAGCAGTTGATTCCA...TGGTGTAGATGTCTGGTTACTACAGTTGAAACCTTCCCTGTGGTGTTTCTTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CCA 90 bp CAGCTAAGGGATACTAAAGTAAATGTGGGTCCATTGGTACTTAAAACTTTTATCTGGTTCCCTTTATTCTaGCAAGTGACACACTCCCCA +
Preference number: 2 (lower is better)
Translates to: QLRDTKVNVGPLVLKTFIWFPLF*QVTHSP
Trigger: TGGGGAGTGTGTCACTTGCCAGAATAAAGGGAACCA...GATAAAAGTTTTAAGTACCAATGGACCCACATTTACTTTAGTATCCCTTAGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CCA 90 bp CAAAAGAAACACCACAGGGAAGGTTTCAACTGTAGTAACCAGACATCTACACCATCATCAGAAATTAACTaGCTTCGTAGTATAAGGACG +
Preference number: 2 (lower is better)
Translates to: QKKHHREGFNCSNQTSTPSSEIN*LRSIRT
Trigger: CGTCCTTATACTACGAAGCCAGTTAATTTCTGATGA...TGGTGTAGATGTCTGGTTACTACAGTTGAAACCTTCCCTGTGGTGTTTCTTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR GCA 90 bp CAAAAGAAACACCACAGGGAAGGTTTCAACTGTAGTAACCAGACATCTACACCACTTGTTCAAAAAGTCTaGAGTAAAATTCTAGCTGTC +
Preference number: 2 (lower is better)
Translates to: QKKHHREGFNCSNQTSTPLVQKV*SKILAV
Trigger: GACAGCTAGAATTTTACTGCAGACTTTTTGAACAAG...TGGTGTAGATGTCTGGTTACTACAGTTGAAACCTTCCCTGTGGTGTTTCTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACTCTAACACCAAACTTTaGAAAGTTCTTTCTGTGTGT +
Preference number: 2 (lower is better)
Translates to: TKNRYTLIPERRLKANIHSNTKL*KVLSVC
Trigger: ACACACAGAAAGAACTTTCCAAAGTTTGGTGTTAGA...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CCA 90 bp CAAAAGAAACACCACAGGGAAGGTTTCAACTGTAGTAACCAGACATCTACACCATACTTAATTTTGGCATaGAATGAATCCAGACAAGCT +
Preference number: 2 (lower is better)
Translates to: QKKHHREGFNCSNQTSTPYLILA*NESRQA
Trigger: AGCTTGTCTGGATTCATTCCATGCCAAAATTAAGTA...TGGTGTAGATGTCTGGTTACTACAGTTGAAACCTTCCCTGTGGTGTTTCTTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp GTGAGTTCTACATTTACTTTATCTGGTAAAGAAGATTTCCCGGAAGGAAGTAATATACCACTGACAGAATaGAAGACAGCATGTGTAGAG +
Preference number: 2 (lower is better)
Translates to: VSSTFTLSGKEDFPEGSNIPLTE*KTACVE
Trigger: CTCTACACATGCTGTCTTTCATTCTGTCAGTGGTAT...ATTACTTCCTTCCGGGAAATCTTCTTTACCAGATAAAGTAAATGTAGAACTCAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CAA 90 bp ATCTGCCACAACACTGACCACAAGTCTCAGAGGGAATGCACATCTTaGATAGGATTATTATCAATAAGACTAAGATACATTTCAGTGATT +
Preference number: 2 (lower is better)
Translates to: ICHNTDHKSQRECTS*IGLLSIRLRYISVI
Trigger: AATCACTGAAATGTATCTTAGTCTTATTGATAATAATCCTATCAAAGATGTGCATTCCCTCTGAGACTTGTGGTCAGTGTTGTGGCAGAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR GCA 90 bp AGGAAACCAGACACAAAAGAACACAGAACAACACACTGTTCTAAATCTTTGAAATCAACAATGACAGAATaGTTACAGGTTGAGTCTGAC +
Preference number: 2 (lower is better)
Translates to: RKPDTKEHRTTHCSKSLKSTMTE*LQVESD
Trigger: GTCAGACTCAACCTGTAAGCATTCTGTCATTGTTGA...TTTCAAAGATTTAGAACAGTGTGTTGTTCTGTGTTCTTTTGTGTCTGGTTTCCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR GCA 90 bp CAGCTAAGGGATACTAAAGTAAATGTGGGTCCATTGGTACTTAAAACTTTTATCATTTGGCACAAGATATaGATGCTAACTGGTTTGCCT +
Preference number: 2 (lower is better)
Translates to: QLRDTKVNVGPLVLKTFIIWHKI*MLTGLP
Trigger: AGGCAAACCAGTTAGCATGCATATCTTGTGCCAAAT...GATAAAAGTTTTAAGTACCAATGGACCCACATTTACTTTAGTATCCCTTAGCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CCA 90 bp GTGAGTTCTACATTTACTTTATCTGGTAAAGAAGATTTCCCGGAAGGAAGTAATCAGATGAAAGCTAGTTaGTATGTACAGGAGTCCTTA +
Preference number: 2 (lower is better)
Translates to: VSSTFTLSGKEDFPEGSNQMKAS*YVQESL
Trigger: TAAGGACTCCTGTACATACCAACTAGCTTTCATCTG...ATTACTTCCTTCCGGGAAATCTTCTTTACCAGATAAAGTAAATGTAGAACTCAC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CCA 90 bp AGGAAACCAGACACAAAAGAACACAGAACAACACACTGTTCTAAATCTTTGAAAAACCCTCGCTTTAATTaGAGGCTCTTTTTCACAGAT +
Preference number: 2 (lower is better)
Translates to: RKPDTKEHRTTHCSKSLKNPRFN*RLFFTD
Trigger: ATCTGTGAAAAAGAGCCTCCAATTAAAGCGAGGGTT...TTTCAAAGATTTAGAACAGTGTGTTGTTCTGTGTTCTTTTGTGTCTGGTTTCCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CCA 90 bp CAGCTAAGGGATACTAAAGTAAATGTGGGTCCATTGGTACTTAAAACTTTTATCATTCATGAGCAATACTaGCTAAGCAGGGAGACTTTA +
Preference number: 2 (lower is better)
Translates to: QLRDTKVNVGPLVLKTFIIHEQY*LSRETL
Trigger: TAAAGTCTCCCTGCTTAGCCAGTATTGCTCATGAAT...GATAAAAGTTTTAAGTACCAATGGACCCACATTTACTTTAGTATCCCTTAGCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CAA 90 bp GTACCAATGCCAGGGTTTTTCATTAACAACTGTATTTCAGAGTATTaGGCACAAGATATGCATGCTAACTGGTTTGCCTTATACTATATT +
Preference number: 2 (lower is better)
Translates to: VPMPGFFINNCISEY*AQDMHANWFALYYI
Trigger: AATATAGTATAAGGCAAACCAGTTAGCATGCATATCTTGTGCCAAATACTCTGAAATACAGTTGTTAATGAAAAACCCTGGCATTGGTAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR TCA 90 bp GTGAGTTCTACATTTACTTTATCTGGTAAAGAAGATTTCCCGGAAGGAAGTAATACAGTTTATTCCTTTTaGCACTCTTCTGAAACAAGG +
Preference number: 2 (lower is better)
Translates to: VSSTFTLSGKEDFPEGSNTVYSF*HSSETR
Trigger: CCTTGTTTCAGAAGAGTGTCAAAAGGAATAAACTGT...ATTACTTCCTTCCGGGAAATCTTCTTTACCAGATAAAGTAAATGTAGAACTCAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR GCA 90 bp CAGCTAAGGGATACTAAAGTAAATGTGGGTCCATTGGTACTTAAAACTTTTATCGATTCTATCAAAGCATaGCCATCTGTGTTTATGTGT +
Preference number: 2 (lower is better)
Translates to: QLRDTKVNVGPLVLKTFIDSIKA*PSVFMC
Trigger: ACACATAAACACAGATGGGCATGCTTTGATAGAATC...GATAAAAGTTTTAAGTACCAATGGACCCACATTTACTTTAGTATCCCTTAGCTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CCA 90 bp AGGAAACCAGACACAAAAGAACACAGAACAACACACTGTTCTAAATCTTTGAAACCATGTCTAGTACGATaGCTTTCCTTTAAAAGTCTT +
Preference number: 2 (lower is better)
Translates to: RKPDTKEHRTTHCSKSLKPCLVR*LSFKSL
Trigger: AAGACTTTTAAAGGAAAGCCATCGTACTAGACATGG...TTTCAAAGATTTAGAACAGTGTGTTGTTCTGTGTTCTTTTGTGTCTGGTTTCCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CCA 72 bp CTCACTGTTCCTGGAGGTGGCGCTGTACTGTGTCACTaGTCCAAAAGGCATGAGCCGCTTCTCCTTCCAGTC +
Preference number: 3 (lower is better)
Translates to: LTVPGGGAVLCH*SKRHEPLLLPV
Trigger: GACTGGAAGGAGAAGCGGCTCATGCCTTTTGGACCAGTGACACAGTACAGCGCCACCTCCAGGAACAGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 72 bp GGGTCCTCATGCTTGCACCGCAGGCATGTGACTGTCTaGACCATCTCTCCAGGCCTACTTCTCATATGCCTC +
Preference number: 3 (lower is better)
Translates to: GSSCLHRRHVTV*TISPGLLLICL
Trigger: GAGGCATATGAGAAGTAGGCCTGGAGAGATGGTTCAGACAGTCACATGCCTGCGGTGCAAGCATGAGGACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 72 bp CTACACTTGGGTCCTCATGCTTGCACCGCAGGCATGTaGCTGTCTGAACCATCTCTCCAGGCCTACTTCTCA +
Preference number: 3 (lower is better)
Translates to: LHLGPHACTAGM*LSEPSLQAYFS
Trigger: TGAGAAGTAGGCCTGGAGAGATGGTTCAGACAGTCACATGCCTGCGGTGCAAGCATGAGGACCCAAGTGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CAA 90 bp TTTGACATAAAATCTTTCACCAATCCTGAAGCTTGCCAATATGGCCAGGCTGGCGGCAGAACCCTCTGGTaGGCAGTAGCAGCTGAGAGG +
Preference number: 3 (lower is better)
Translates to: FDIKSFTNPEACQYGQAGGRTLW*AVAAER
Trigger: CCTCTCAGCTGCTACTGCCAACCAGAGGGTTCTGCC...GCCAGCCTGGCCATATTGGCAAGCTTCAGGATTGGTGAAAGATTTTATGTCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 72 bp CAGATACGACAAGTATACCGATGCTACACCACGGGCTaGAACCATGCTTCAACTACGTCCCTCGAGCATTAC +
Preference number: 3 (lower is better)
Translates to: QIRQVYRCYTTG*NHASTTSLEHY
Trigger: GTAATGCTCGAGGGACGTAGTTGAAGCATGGTTTCAGCCCGTGGTGTAGCATCGGTATACTTGTCGTATCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CCA 72 bp AATAGACTTGTTTTCTCCAGAGGACCTCACTGTTCCTaGAGGTGGCGCTGTACTGTGTCACTGGTCCAAAAG +
Preference number: 3 (lower is better)
Translates to: NRLVFSRGPHCS*RWRCTVSLVQK
Trigger: CTTTTGGACCAGTGACACAGTACAGCGCCACCTCCAGGAACAGTGAGGTCCTCTGGAGAAAACAAGTCTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CCA 72 bp AATAGCAAATGCTACCTATTTATCAGGTCCAGGGGCTaGAGAGGGGGCTTCGTTCAGAGTGCTTGCTCTTCT +
Preference number: 3 (lower is better)
Translates to: NSKCYLFIRSRG*RGGFVQSACSS
Trigger: AGAAGAGCAAGCACTCTGAACGAAGCCCCCTCTCCAGCCCCTGGACCTGATAAATAGGTAGCATTTGCTATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 72 bp GGGCTTCGTTCAGAGTGCTTGCTCTTCTGGAGGACCTaGGTTTGGTTCCTAGTATTGATATCCAGCAATTCA +
Preference number: 3 (lower is better)
Translates to: GLRSECLLFWRT*VWFLVLISSNS
Trigger: TGAATTGCTGGATATCAATACTAGGAACCAAACTCAGGTCCTCCAGAAGAGCAAGCACTCTGAACGAAGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR GCA 72 bp GAACCATCTCTCCAGGCCTACTTCTCATATGCCTCCTaGGGCTTTCAAGAACTAAAAACTGAGTTCTGCTTC +
Preference number: 3 (lower is better)
Translates to: EPSLQAYFSYAS*GFQELKTEFCF
Trigger: GAAGCAGAACTCAGTTTTTAGTTCTTGAAAGCCGCAGGAGGCATATGAGAAGTAGGCCTGGAGAGATGGTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR GCA 72 bp ATACACAGAAAAGTACACAGAGGTGTATTAGTGCACTaGACATGGCACACAGCACTGGGACAAGCATGCATG +
Preference number: 3 (lower is better)
Translates to: IHRKVHRGVLVH*TWHTALGQACM
Trigger: CATGCATGCTTGTCCCAGTGCTGTGTGCCATGTGCAGTGCACTAATACACCTCTGTGTACTTTTCTGTGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CCA 72 bp TTTAGAAGGTTCCTGGGATGGCAGATGAAAGCTAGTTaGTATGTACAGGAGTCCTTAAGACAGAGGCCACAG +
Preference number: 3 (lower is better)
Translates to: FRRFLGWQMKAS*YVQESLRQRPQ
Trigger: CTGTGGCCTCTGTCTTAAGGACTCCTGTACATACCAACTAGCTTTCATCTGCCATCCCAGGAACCTTCTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CCA 72 bp GGGGAGACAGGAGGCACCAGACTCATTCCACAGTTATaGAATCAACTGCTCTGGTTTACTTCATATTTGTGG +
Preference number: 3 (lower is better)
Translates to: GETGGTRLIPQL*NQLLWFTSYLW
Trigger: CCACAAATATGAAGTAAACCAGAGCAGTTGATTCCATAACTGTGGAATGAGTCTGGTGCCTCCTGTCTCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CCA 72 bp AGAAAAGTACACAGAGGTGTATTAGTGCACTGCACATaGCACACAGCACTGGGACAAGCATGCATGTTGAGA +
Preference number: 3 (lower is better)
Translates to: RKVHRGVLVHCT*HTALGQACMLR
Trigger: TCTCAACATGCATGCTTGTCCCAGTGCTGTGTGCCATGTGCAGTGCACTAATACACCTCTGTGTACTTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CCA 72 bp AGCACTGCATCTATAGTCTTTAGAAGGTTCCTGGGATaGCAGATGAAAGCTAGTTGGTATGTACAGGAGTCC +
Preference number: 3 (lower is better)
Translates to: STASIVFRRFLG*QMKASWYVQES
Trigger: GGACTCCTGTACATACCAACTAGCTTTCATCTGCCATCCCAGGAACCTTCTAAAGACTATAGATGCAGTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CAA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACCTAGACACCCACTGCTaGCACAACTTCTTTGTCAAT +
Preference number: 3 (lower is better)
Translates to: TKNRYTLIPERRLKANIHLDTHC*HNFFVN
Trigger: ATTGACAAAGAAGTTGTGCAAGCAGTGGGTGTCTAG...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR GCA 72 bp CATTTCCCACTGATGTTCAAGTCAACAATGACAGAATaGTTACAGGTTGAGTCTGACTCGAGATACCAACTC +
Preference number: 3 (lower is better)
Translates to: HFPLMFKSTMTE*LQVESDSRYQL
Trigger: GAGTTGGTATCTCGAGTCAGACTCAACCTGTAAGCATTCTGTCATTGTTGACTTGAACATCAGTGGGAAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CCA 72 bp GTTCCCTTTATTCTGGCAAGTGACACACTCCCCAAATaGACCGTGACCCTAAATAAACTTTATAGTCTCTTG +
Preference number: 3 (lower is better)
Translates to: VPFILASDTLPK*TVTLNKLYSLL
Trigger: CAAGAGACTATAAAGTTTATTTAGGGTCACGGTCCATTTGGGGAGTGTGTCACTTGCCAGAATAAAGGGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CAA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACTCAGCCTTGTATGAGTaGGTGAGCATTGTGAAAATG +
Preference number: 3 (lower is better)
Translates to: TKNRYTLIPERRLKANIHSALYE*VSIVKM
Trigger: CATTTTCACAATGCTCACCAACTCATACAAGGCTGA...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 72 bp AACAAAGCTGATTCTCTTAGTACCATTCCTGGGCACTaGGAAGGACATAAGTTCACAAGTGCAACTGTGAAT +
Preference number: 3 (lower is better)
Translates to: NKADSLSTIPGH*EGHKFTSATVN
Trigger: ATTCACAGTTGCACTTGTGAACTTATGTCCTTCTCAGTGCCCAGGAATGGTACTAAGAGAATCAGCTTTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 72 bp ACTGGTTTGCCTTATACTATATTAGGTTCTAGTGGATaGACACTGGGGACTGAGCAGAGACATAAAGAAAGC +
Preference number: 3 (lower is better)
Translates to: TGLPYTILGSSG*TLGTEQRHKES
Trigger: GCTTTCTTTATGTCTCTGCTCAGTCCCCAGTGTTCATCCACTAGAACCTAATATAGTATAAGGCAAACCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CCA 72 bp AAACAAATGATGCAAACCCAGAGTTGTTCTGGCCTCTaGAGTTATCCCTTTAACAACCTATCATTGCTACAG +
Preference number: 3 (lower is better)
Translates to: KQMMQTQSCSGL*SYPFNNLSLLQ
Trigger: CTGTAGCAATGATAGGTTGTTAAAGGGATAACTCCAGAGGCCAGAACAACTCTGGGTTTGCATCATTTGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 72 bp ACACTATGGTACAGTTTATTCCTTTTGACACTCTTCTaGAACAAGGGACTAAAGGGTCTGCCATGTCTAGTA +
Preference number: 3 (lower is better)
Translates to: TLWYSLFLLTLF*NKGLKGLPCLV
Trigger: TACTAGACATGGCAGACCCTTTAGTCCCTTGTTTCAGAAGAGTGTCAAAAGGAATAAACTGTACCATAGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 72 bp CTCTGGTTTACTTCATATTTGTGGATCCCCACCTCTTaGGTATTTGTGTGTGTGTGTGTGTGTTTACATGTT +
Preference number: 3 (lower is better)
Translates to: LWFTSYLWIPTS*VFVCVCVCLHV
Trigger: AACATGTAAACACACACACACACACACAAATACTCAAGAGGTGGGGATCCACAAATATGAAGTAAACCAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 72 bp ACTACTCGTAAAATCAAACTTGATACAACCCATTCATaGGCAATACTGGCTAAGCAGGGAGACTTTAGATCT +
Preference number: 3 (lower is better)
Translates to: TTRKIKLDTTHS*AILAKQGDFRS
Trigger: AGATCTAAAGTCTCCCTGCTTAGCCAGTATTGCTCATGAATGGGTTGTATCAAGTTTGATTTTACGAGTAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CAA 90 bp GTGAGTTCTACATTTACTTTATCTGGTAAAGAAGATTTCCCGGAAGGAAGTAATACTGTAAAAATAGACTaGTTTTCTCCAGAGGACCTC +
Preference number: 3 (lower is better)
Translates to: VSSTFTLSGKEDFPEGSNTVKID*FSPEDL
Trigger: GAGGTCCTCTGGAGAAAACAAGTCTATTTTTACAGT...ATTACTTCCTTCCGGGAAATCTTCTTTACCAGATAAAGTAAATGTAGAACTCAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CAA 90 bp CAGCTAAGGGATACTAAAGTAAATGTGGGTCCATTGGTACTTAAAACTTTTATCCAGTTTCATTCAGCTTaGGTGGTAAAGTATGTTTGC +
Preference number: 3 (lower is better)
Translates to: QLRDTKVNVGPLVLKTFIQFHSA*VVKYVC
Trigger: GCAAACATACTTTACCACCAAAGCTGAATGAAACTG...GATAAAAGTTTTAAGTACCAATGGACCCACATTTACTTTAGTATCCCTTAGCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR-3UTR CAA 90 bp CAGCTAAGGGATACTAAAGTAAATGTGGGTCCATTGGTACTTAAAACTTTTATCCAGTTTTGGTTTATCTaGGGCATGTTGCTACGTTTA +
Preference number: 3 (lower is better)
Translates to: QLRDTKVNVGPLVLKTFIQFWFI*GMLLRL
Trigger: TAAACGTAGCAACATGCCCAAGATAAACCAAAACTG...GATAAAAGTTTTAAGTACCAATGGACCCACATTTACTTTAGTATCCCTTAGCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 72 bp ACTGAAGGCAAAGAACAACTATATTCTTCAAGCTCCTaGCCTTCCTATTTTTCTATAGCTAAGGATGAACTA +
Preference number: 3 (lower is better)
Translates to: TEGKEQLYSSSS*PSYFSIAKDEL
Trigger: TAGTTCATCCTTAGCTATAGAAAAATAGGAAGGTCAGGAGCTTGAAGAATATAGTTGTTCTTTGCCTTCAGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 72 bp CTTTCTCGTTTCCTCACATATCAGCAAGCCTTATGGTaGAAGAGTAGATATTCACAGAATTATGTTTCTTGT +
Preference number: 3 (lower is better)
Translates to: LSRFLTYQQALW*KSRYSQNYVSC
Trigger: ACAAGAAACATAATTCTGTGAATATCTACTCTTTCACCATAAGGCTTGCTGATATGTGAGGAAACGAGAAAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 72 bp CCTATGATATACAAACTCACAAATCTTCCACACAGATaGAAAACAATCAACAAAAACCTAGCTATCCAACAC +
Preference number: 3 (lower is better)
Translates to: PMIYKLTNLPHR*KTINKNLAIQH
Trigger: GTGTTGGATAGCTAGGTTTTTGTTGATTGTTTTTCATCTGTGTGGAAGATTTGTGAGTTTGTATATCATAGG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR TCA 72 bp ACACCACAAAACAAGCCACGGTCAGATTACTTCAAATaGTTATTACCGCAATTAACTGCTAAAAGATTACTA +
Preference number: 3 (lower is better)
Translates to: TPQNKPRSDYFK*LLPQLTAKRLL
Trigger: TAGTAATCTTTTAGCAGTTAATTGCGGTAATAATCATTTGAAGTAATCTGACCGTGGCTTGTTTTGTGGTGT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp AAGGTCCAGGGAAGAACTAACATGGCTGACGTGGGCAGAACCCTCTGGTTGGCACACACGATGGAGAGGTaGTCTGTTGAGACCCAGGTC +
Preference number: 4 (lower is better)
Translates to: KVQGRTNMADVGRTLWLAHTMER*SVETQV
Trigger: GACCTGGGTCTCAACAGACCACCTCTCCATCGTGTG...TGCCAACCAGAGGGTTCTGCCCACGTCAGCCATGTTAGTTCTTCCCTGGACCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR TCA 90 bp AAGGTCCAGGGAAGAACTAACATGGCTGACGTGGGCAGAACCCTCTGGTTGGCACAGCTCAGCTTTCCATaGCAAATCAACCCCTTGCCG +
Preference number: 4 (lower is better)
Translates to: KVQGRTNMADVGRTLWLAQLSFP*QINPLP
Trigger: CGGCAAGGGGTTGATTTGTCATGGAAAGCTGAGCTG...TGCCAACCAGAGGGTTCTGCCCACGTCAGCCATGTTAGTTCTTCCCTGGACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp GTTTTCTCCAGAGGACCTCACTGTTCCTGGAGGTGGCGCTGTACTGTGTCACTGAACAGCCAGAGGAAGTaGGAACTGGGAGACGGTCTT +
Preference number: 4 (lower is better)
Translates to: VFSRGPHCSWRWRCTVSLNSQRK*ELGDGL
Trigger: AAGACCGTCTCCCAGTTCCCACTTCCTCTGGCTGTT...CAGTGACACAGTACAGCGCCACCTCCAGGAACAGTGAGGTCCTCTGGAGAAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR TCA 90 bp GTTTTCTCCAGAGGACCTCACTGTTCCTGGAGGTGGCGCTGTACTGTGTCACTGAGTCGAAGTGGTACTTaGAGTCGATGTCTTCTGCTT +
Preference number: 4 (lower is better)
Translates to: VFSRGPHCSWRWRCTVSLSRSGT*SRCLLL
Trigger: AAGCAGAAGACATCGACTTCAAGTACCACTTCGACT...CAGTGACACAGTACAGCGCCACCTCCAGGAACAGTGAGGTCCTCTGGAGAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR GCA 90 bp AAGGTCCAGGGAAGAACTAACATGGCTGACGTGGGCAGAACCCTCTGGTTGGCACGAACATGTAGCTCATaGTGCACTTGTTTTCCTCGA +
Preference number: 4 (lower is better)
Translates to: KVQGRTNMADVGRTLWLARTCSS*CTCFPR
Trigger: TCGAGGAAAACAAGTGCAGCATGAGCTACATGTTCG...TGCCAACCAGAGGGTTCTGCCCACGTCAGCCATGTTAGTTCTTCCCTGGACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp GTTTTCTCCAGAGGACCTCACTGTTCCTGGAGGTGGCGCTGTACTGTGTCACTGGGGAAACACATACTCTaGCTAGTCAAAACGATGGCA +
Preference number: 4 (lower is better)
Translates to: VFSRGPHCSWRWRCTVSLGKHIL*LVKTMA
Trigger: TGCCATCGTTTTGACTAGCCAGAGTATGTGTTTCCC...CAGTGACACAGTACAGCGCCACCTCCAGGAACAGTGAGGTCCTCTGGAGAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR TCA 90 bp TTTGACATAAAATCTTTCACCAATCCTGAAGCTTGCCAATATGGCCAGGCTGGCGGAGAGGTGGTCTGTTaGGACCCAGGTCTTAGGCAC +
Preference number: 4 (lower is better)
Translates to: FDIKSFTNPEACQYGQAGGEVVC*DPGLRH
Trigger: GTGCCTAAGACCTGGGTCTCAACAGACCACCTCTCC...GCCAGCCTGGCCATATTGGCAAGCTTCAGGATTGGTGAAAGATTTTATGTCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR GCA 90 bp ACCGATGCTACACCACGGGCTGAAACCATGCTTCAACTACGTCCCTCGAGCATTACATGTAGCTCATGCTaGACTTGTTTTCCTCGAAGC +
Preference number: 4 (lower is better)
Translates to: TDATPRAETMLQLRPSSITCSSC*TCFPRS
Trigger: GCTTCGAGGAAAACAAGTGCAGCATGAGCTACATGT...AATGCTCGAGGGACGTAGTTGAAGCATGGTTTCAGCCCGTGGTGTAGCATCGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR GCA 90 bp GTTTTCTCCAGAGGACCTCACTGTTCCTGGAGGTGGCGCTGTACTGTGTCACTGCGAATTGTAGTCAACTaGAATTGTTTACACCACACG +
Preference number: 4 (lower is better)
Translates to: VFSRGPHCSWRWRCTVSLRIVVN*NCLHHT
Trigger: CGTGTGGTGTAAACAATTGCAGTTGACTACAATTCG...CAGTGACACAGTACAGCGCCACCTCCAGGAACAGTGAGGTCCTCTGGAGAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR GCA 90 bp GAGTCCTTAAGACAGAGGCCACAGCATCCCTTCACTAATCTGTCAGATACGACATCACGGTGCTGTGCATaGGAAGACTGTCTTCAGCAT +
Preference number: 4 (lower is better)
Translates to: ESLRQRPQHPFTNLSDTTSRCCA*EDCLQH
Trigger: ATGCTGAAGACAGTCTTCGCATGCACAGCACCGTGA...TGTCGTATCTGACAGATTAGTGAAGGGATGCTGTGGCCTCTGTCTTAAGGACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp ACCGATGCTACACCACGGGCTGAAACCATGCTTCAACTACGTCCCTCGAGCATTTTAACGTCACCTTCCTaGAAGACAGTCCAAAGGAAA +
Preference number: 4 (lower is better)
Translates to: TDATPRAETMLQLRPSSILTSPS*KTVQRK
Trigger: TTTCCTTTGGACTGTCTTCCAGGAAGGTGACGTTAA...AATGCTCGAGGGACGTAGTTGAAGCATGGTTTCAGCCCGTGGTGTAGCATCGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp GTTTTCTCCAGAGGACCTCACTGTTCCTGGAGGTGGCGCTGTACTGTGTCACTGAAGTTGCATAACGCATaGAACACAAGAGGAATGATC +
Preference number: 4 (lower is better)
Translates to: VFSRGPHCSWRWRCTVSLKLHNA*NTRGMI
Trigger: GATCATTCCTCTTGTGTTCCATGCGTTATGCAACTT...CAGTGACACAGTACAGCGCCACCTCCAGGAACAGTGAGGTCCTCTGGAGAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR GCA 90 bp ACCGATGCTACACCACGGGCTGAAACCATGCTTCAACTACGTCCCTCGAGCATTTGGAAGTGCTGTTTATaGAGCCAAAAATCCAACTAT +
Preference number: 4 (lower is better)
Translates to: TDATPRAETMLQLRPSSIWKCCL*SQKSNY
Trigger: ATAGTTGGATTTTTGGCTGCATAAACAGCACTTCCA...AATGCTCGAGGGACGTAGTTGAAGCATGGTTTCAGCCCGTGGTGTAGCATCGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR TCA 90 bp TTTGACATAAAATCTTTCACCAATCCTGAAGCTTGCCAATATGGCCAGGCTGGCAACAAGGCCACCCATTaGGTGACCAATTATTGCCAC +
Preference number: 4 (lower is better)
Translates to: FDIKSFTNPEACQYGQAGNKATH*VTNYCH
Trigger: GTGGCAATAATTGGTCACTCAATGGGTGGCCTTGTT...GCCAGCCTGGCCATATTGGCAAGCTTCAGGATTGGTGAAAGATTTTATGTCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp GAGTCCTTAAGACAGAGGCCACAGCATCCCTTCACTAATCTGTCAGATACGACAATGGAACCTGTGCGATaGTTAGTGAATCTTCATAGG +
Preference number: 4 (lower is better)
Translates to: ESLRQRPQHPFTNLSDTTMEPVR*LVNLHR
Trigger: CCTATGAAGATTCACTAACCATCGCACAGGTTCCAT...TGTCGTATCTGACAGATTAGTGAAGGGATGCTGTGGCCTCTGTCTTAAGGACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CAA 72 bp TCGTTCAGAGTGCTTGCTCTTCTGGAGGACCTGAGTTaGGTTCCTAGTATTGATATCCAGCAATTCACAACC +
Preference number: 4 (lower is better)
Translates to: SFRVLALLEDLS*VPSIDIQQFTT
Trigger: GGTTGTGAATTGCTGGATATCAATACTAGGAACCAAACTCAGGTCCTCCAGAAGAGCAAGCACTCTGAACGA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR TCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACTCGCCAGAAACACCATaGAGACATAGAACGCCAGAT +
Preference number: 4 (lower is better)
Translates to: TKNRYTLIPERRLKANIHSPETP*RHRTPD
Trigger: ATCTGGCGTTCTATGTCTTCATGGTGTTTCTGGCGA...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACGTTTACACCACACGATaGAGAGGTGGTCTGTTGAGA +
Preference number: 4 (lower is better)
Translates to: TKNRYTLIPERRLKANIHVYTTR*RGGLLR
Trigger: TCTCAACAGACCACCTCTCCATCGTGTGGTGTAAAC...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp TTTGACATAAAATCTTTCACCAATCCTGAAGCTTGCCAATATGGCCAGGCTGGCTGCCAGGGGTTTGCATaGGTCAGGACTAAGTTTAAA +
Preference number: 4 (lower is better)
Translates to: FDIKSFTNPEACQYGQAGCQGFA*VRTKFK
Trigger: TTTAAACTTAGTCCTGACCCATGCAAACCCCTGGCA...GCCAGCCTGGCCATATTGGCAAGCTTCAGGATTGGTGAAAGATTTTATGTCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR TCA 90 bp AGACAATCAGCCTTGTATGAGTTGGTGAGCATTGTGAAAATGTGTCATATTGACGGAACACAAGAGGAATaGTCACAAAACACGGGACCC +
Preference number: 4 (lower is better)
Translates to: RQSALYELVSIVKMCHIDGTQEE*SQNTGP
Trigger: GGGTCCCGTGTTTTGTGATCATTCCTCTTGTGTTCC...GTCAATATGACACATTTTCACAATGCTCACCAACTCATACAAGGCTGATTGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR GCA 90 bp CAAAAGAAACACCACAGGGAAGGTTTCAACTGTAGTAACCAGACATCTACACCATTGTATCCAGCATGGTaGTCTGACAATAGGCATGAG +
Preference number: 4 (lower is better)
Translates to: QKKHHREGFNCSNQTSTPLYPAW*SDNRHE
Trigger: CTCATGCCTATTGTCAGAGCACCATGCTGGATACAA...TGGTGTAGATGTCTGGTTACTACAGTTGAAACCTTCCCTGTGGTGTTTCTTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR GCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACCAGAAGTATGGCAAGTaGTCCACAAGTTGTCCAACT +
Preference number: 4 (lower is better)
Translates to: TKNRYTLIPERRLKANIHQKYGK*STSCPT
Trigger: AGTTGGACAACTTGTGGAGCACTTGCCATACTTCTG...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp GTGAGTTCTACATTTACTTTATCTGGTAAAGAAGATTTCCCGGAAGGAAGTAATCCCCTTGCCGGCACATaGAAGTGCTGTTTATGCAGC +
Preference number: 4 (lower is better)
Translates to: VSSTFTLSGKEDFPEGSNPLAGT*KCCLCS
Trigger: GCTGCATAAACAGCACTTCCATGTGCCGGCAAGGGG...ATTACTTCCTTCCGGGAAATCTTCTTTACCAGATAAAGTAAATGTAGAACTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACTCAGAGAAATGTCTGTaGAAGATGGAACCTGTGCGA +
Preference number: 4 (lower is better)
Translates to: TKNRYTLIPERRLKANIHSEKCL*KMEPVR
Trigger: TCGCACAGGTTCCATCTTCCACAGACATTTCTCTGA...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR TCA 90 bp AGACAATCAGCCTTGTATGAGTTGGTGAGCATTGTGAAAATGTGTCATATTGACAGGCCACCCATTGAGTaGCCAATTATTGCCACACTT +
Preference number: 4 (lower is better)
Translates to: RQSALYELVSIVKMCHIDRPPIE*PIIATL
Trigger: AAGTGTGGCAATAATTGGTCACTCAATGGGTGGCCT...GTCAATATGACACATTTTCACAATGCTCACCAACTCATACAAGGCTGATTGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR GCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACTTCTGCTTTCCTAAGTaGAATAGAGCCGATAGATCG +
Preference number: 4 (lower is better)
Translates to: TKNRYTLIPERRLKANIHFCFPK*NRADRS
Trigger: CGATCTATCGGCTCTATTGCACTTAGGAAAGCAGAA...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR GCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACGCTTCCACCATACAATaGCACCAGTTCTTCATTGAA +
Preference number: 4 (lower is better)
Translates to: TKNRYTLIPERRLKANIHASTIQ*HQFFIE
Trigger: TTCAATGAAGAACTGGTGGCATTGTATGGTGGAAGC...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACCTGAAGAAGTCGAAGTaGTACTTGAAGTCGATGTCT +
Preference number: 4 (lower is better)
Translates to: TKNRYTLIPERRLKANIHLKKSK*YLKSMS
Trigger: AGACATCGACTTCAAGTACCACTTCGACTTCTTCAG...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp CAAAAGAAACACCACAGGGAAGGTTTCAACTGTAGTAACCAGACATCTACACCAGAGAATCGCTATAGCTaGAATAAGGAGAAATGCCAG +
Preference number: 4 (lower is better)
Translates to: QKKHHREGFNCSNQTSTPENRYS*NKEKCQ
Trigger: CTGGCATTTCTCCTTATTCCAGCTATAGCGATTCTC...TGGTGTAGATGTCTGGTTACTACAGTTGAAACCTTCCCTGTGGTGTTTCTTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp CACATCTCCAGCAAAGTTAGAGCAGATACATTCCTACTTAGATATGTAAGTGTTGGGACCCTGTATAAGTaGGAGGAGCCAAAAGCAATC +
Preference number: 4 (lower is better)
Translates to: HISSKVRADTFLLRYVSVGTLYK*EEPKAI
Trigger: GATTGCTTTTGGCTCCTCCCACTTATACAGGGTCCC...AACACTTACATATCTAAGTAGGAATGTATCTGCTCTAACTTTGCTGGAGATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR TCA 90 bp AGACAATCAGCCTTGTATGAGTTGGTGAGCATTGTGAAAATGTGTCATATTGACAACTTGGTCTGCTTCTaGAGGCTTCCACCATACAAT +
Preference number: 4 (lower is better)
Translates to: RQSALYELVSIVKMCHIDNLVCF*RLPPYN
Trigger: ATTGTATGGTGGAAGCCTTCAGAAGCAGACCAAGTT...GTCAATATGACACATTTTCACAATGCTCACCAACTCATACAAGGCTGATTGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp AGGAAACCAGACACAAAAGAACACAGAACAACACACTGTTCTAAATCTTTGAAAGGGAGCTCTATTTTCTaGTACTCGGGGTACTCGAAC +
Preference number: 4 (lower is better)
Translates to: RKPDTKEHRTTHCSKSLKGSSIF*YSGYSN
Trigger: GTTCGAGTACCCCGAGTACCAGAAAATAGAGCTCCC...TTTCAAAGATTTAGAACAGTGTGTTGTTCTGTGTTCTTTTGTGTCTGGTTTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACCAACAGATAAGGCACTaGTGTAATGGCTCAATTTTG +
Preference number: 4 (lower is better)
Translates to: TKNRYTLIPERRLKANIHQQIRH*CNGSIL
Trigger: CAAAATTGAGCCATTACACCAGTGCCTTATCTGTTG...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp CACATCTCCAGCAAAGTTAGAGCAGATACATTCCTACTTAGATATGTAAGTGTTCCACATAGGACCATCTaGACACTTTTACTGGAACCC +
Preference number: 4 (lower is better)
Translates to: HISSKVRADTFLLRYVSVPHRTI*TLLLEP
Trigger: GGGTTCCAGTAAAAGTGTCCAGATGGTCCTATGTGG...AACACTTACATATCTAAGTAGGAATGTATCTGCTCTAACTTTGCTGGAGATGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACTATTTGTATCCAGCATaGTGCTCTGACAATAGGCAT +
Preference number: 4 (lower is better)
Translates to: TKNRYTLIPERRLKANIHYLYPA*CSDNRH
Trigger: ATGCCTATTGTCAGAGCACCATGCTGGATACAAATA...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR GCA 90 bp AGGAAACCAGACACAAAAGAACACAGAACAACACACTGTTCTAAATCTTTGAAATTTCAGTGTAAGCAATaGTCTGGCAACAAGGCCACC +
Preference number: 4 (lower is better)
Translates to: RKPDTKEHRTTHCSKSLKFQCKQ*SGNKAT
Trigger: GGTGGCCTTGTTGCCAGAGCATTGCTTACACTGAAA...TTTCAAAGATTTAGAACAGTGTGTTGTTCTGTGTTCTTTTGTGTCTGGTTTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR GCA 90 bp CAGCTAAGGGATACTAAAGTAAATGTGGGTCCATTGGTACTTAAAACTTTTATCTGGAATAAGGAGAAATaGCAGGGGTTTGCATGGGTC +
Preference number: 4 (lower is better)
Translates to: QLRDTKVNVGPLVLKTFIWNKEK*QGFAWV
Trigger: GACCCATGCAAACCCCTGGCATTTCTCCTTATTCCA...GATAAAAGTTTTAAGTACCAATGGACCCACATTTACTTTAGTATCCCTTAGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACCTTTGTCAGTTTCTTTaGGAGCTCTATTTTCTGGTA +
Preference number: 4 (lower is better)
Translates to: TKNRYTLIPERRLKANIHLCQFL*ELYFLV
Trigger: TACCAGAAAATAGAGCTCCCAAAGAAACTGACAAAG...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACCTCAAACTGTTTAGCTaGGTGTCTTATAAAATGGTG +
Preference number: 4 (lower is better)
Translates to: TKNRYTLIPERRLKANIHLKLFS*VSYKMV
Trigger: CACCATTTTATAAGACACCCAGCTAAACAGTTTGAG...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp AGACAATCAGCCTTGTATGAGTTGGTGAGCATTGTGAAAATGTGTCATATTGACACTTCCGTGGACAGATaGCACATAGACAACAATATG +
Preference number: 4 (lower is better)
Translates to: RQSALYELVSIVKMCHIDTSVDR*HIDNNM
Trigger: CATATTGTTGTCTATGTGCCATCTGTCCACGGAAGT...GTCAATATGACACATTTTCACAATGCTCACCAACTCATACAAGGCTGATTGTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR GCA 90 bp AGACAATCAGCCTTGTATGAGTTGGTGAGCATTGTGAAAATGTGTCATATTGACGAAGTCGATGTCTTCTaGTTTCCTAAGTGCAATAGA +
Preference number: 4 (lower is better)
Translates to: RQSALYELVSIVKMCHIDEVDVF*FPKCNR
Trigger: TCTATTGCACTTAGGAAAGCAGAAGACATCGACTTC...GTCAATATGACACATTTTCACAATGCTCACCAACTCATACAAGGCTGATTGTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp CAGCTAAGGGATACTAAAGTAAATGTGGGTCCATTGGTACTTAAAACTTTTATCACTCGTGTACAAACTTaGTCTGCTTCTGAAGGCTTC +
Preference number: 4 (lower is better)
Translates to: QLRDTKVNVGPLVLKTFITRVQT*SASEGF
Trigger: GAAGCCTTCAGAAGCAGACCAAGTTTGTACACGAGT...GATAAAAGTTTTAAGTACCAATGGACCCACATTTACTTTAGTATCCCTTAGCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACCAACTTTGTATGGTTTaGCTTCTTTATCCAATATGG +
Preference number: 4 (lower is better)
Translates to: TKNRYTLIPERRLKANIHQLCMV*LLYPIW
Trigger: CCATATTGGATAAAGAAGCCAAACCATACAAAGTTG...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR TCA 90 bp AGGAAACCAGACACAAAAGAACACAGAACAACACACTGTTCTAAATCTTTGAAATTTACTGAAACAGTGTaGGTGTTTCCGAGAATCGCT +
Preference number: 4 (lower is better)
Translates to: RKPDTKEHRTTHCSKSLKFTETV*VFPRIA
Trigger: AGCGATTCTCGGAAACACTCACACTGTTTCAGTAAA...TTTCAAAGATTTAGAACAGTGTGTTGTTCTGTGTTCTTTTGTGTCTGGTTTCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp GTGAGTTCTACATTTACTTTATCTGGTAAAGAAGATTTCCCGGAAGGAAGTAATATGGCTGTCATTTTCTaGCTGAGCAACATGAAGCTT +
Preference number: 4 (lower is better)
Translates to: VSSTFTLSGKEDFPEGSNMAVIF*LSNMKL
Trigger: AAGCTTCATGTTGCTCAGCCAGAAAATGACAGCCAT...ATTACTTCCTTCCGGGAAATCTTCTTTACCAGATAAAGTAAATGTAGAACTCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp AGACAATCAGCCTTGTATGAGTTGGTGAGCATTGTGAAAATGTGTCATATTGACCTGTCCAAGTATTTGTaGGAAGGAAGTCTTAATTGT +
Preference number: 4 (lower is better)
Translates to: RQSALYELVSIVKMCHIDLSKYL*EGSLNC
Trigger: ACAATTAAGACTTCCTTCCCACAAATACTTGGACAG...GTCAATATGACACATTTTCACAATGCTCACCAACTCATACAAGGCTGATTGTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp GTGAGTTCTACATTTACTTTATCTGGTAAAGAAGATTTCCCGGAAGGAAGTAATGATAAGACAGAAGTATaGCAAGTGCTCCACAAGTTG +
Preference number: 4 (lower is better)
Translates to: VSSTFTLSGKEDFPEGSNDKTEV*QVLHKL
Trigger: CAACTTGTGGAGCACTTGCCATACTTCTGTCTTATC...ATTACTTCCTTCCGGGAAATCTTCTTTACCAGATAAAGTAAATGTAGAACTCAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
3UTR CAA 72 bp AAAATGTACAGGGACTTGATAGAAAGACAATCAGCCTaGTATGAGTTGGTGAGCATTGTGAAAATGTGTCAT +
Preference number: 4 (lower is better)
Translates to: KMYRDLIERQSA*YELVSIVKMCH
Trigger: ATGACACATTTTCACAATGCTCACCAACTCATACAAGGCTGATTGTCTTTCTATCAAGTCCCTGTACATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR TCA 90 bp AGGAAACCAGACACAAAAGAACACAGAACAACACACTGTTCTAAATCTTTGAAATTTACTGGACTTTACTaGAACAGTGTGAGTGTTTCC +
Preference number: 4 (lower is better)
Translates to: RKPDTKEHRTTHCSKSLKFTGLY*NSVSVS
Trigger: GGAAACACTCACACTGTTTCAGTAAAGTCCAGTAAA...TTTCAAAGATTTAGAACAGTGTGTTGTTCTGTGTTCTTTTGTGTCTGGTTTCCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp CACATCTCCAGCAAAGTTAGAGCAGATACATTCCTACTTAGATATGTAAGTGTTTTAGGTCAGAAATTATaGACGGATTTTCCTCAAACT +
Preference number: 4 (lower is better)
Translates to: HISSKVRADTFLLRYVSVLGQKL*TDFPQT
Trigger: AGTTTGAGGAAAATCCGTCCATAATTTCTGACCTAA...AACACTTACATATCTAAGTAGGAATGTATCTGCTCTAACTTTGCTGGAGATGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CCA 90 bp CAGCTAAGGGATACTAAAGTAAATGTGGGTCCATTGGTACTTAAAACTTTTATCTCTTCAGCAATTTACTaGACTTTACTGAAACAGTGT +
Preference number: 4 (lower is better)
Translates to: QLRDTKVNVGPLVLKTFISSAIY*TLLKQC
Trigger: ACACTGTTTCAGTAAAGTCCAGTAAATTGCTGAAGA...GATAAAAGTTTTAAGTACCAATGGACCCACATTTACTTTAGTATCCCTTAGCTG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CCA 90 bp TGGAACACAAGAGGAATGATCACAAAACACGGGACCCTGTATAAGTaGGAGGAGCCAAAAGCAATCACGCCAACAGCCAGAGGAAGTGGG +
Preference number: 5 (lower is better)
Translates to: WNTRGMITKHGTLYK*EEPKAITPTARGSG
Trigger: CCCACTTCCTCTGGCTGTTGGCGTGATTGCTTTTGGCTCCTCCCACTTATACAGGGTCCCGTGTTTTGTGATCATTCCTCTTGTGTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CAA 90 bp AAGGTCCAGGGAAGAACTAACATGGCTGACGTGGGCAGAACCCTCTGGTTGGCAGCCACCAGTTCTTCATaGAAGTTGACACTGAAGAAG +
Preference number: 5 (lower is better)
Translates to: KVQGRTNMADVGRTLWLAATSSS*KLTLKK
Trigger: CTTCTTCAGTGTCAACTTCAATGAAGAACTGGTGGC...TGCCAACCAGAGGGTTCTGCCCACGTCAGCCATGTTAGTTCTTCCCTGGACCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CCA 90 bp GAGGAGCCAAAAGCAATCACGCCAACAGCCAGAGGAAGTGGGAACTaGGAGACGGTCTTCAGCAATTTACTGGACTTTACTGAAACAGTG +
Preference number: 5 (lower is better)
Translates to: EEPKAITPTARGSGN*ETVFSNLLDFTETV
Trigger: CACTGTTTCAGTAAAGTCCAGTAAATTGCTGAAGACCGTCTCCCAGTTCCCACTTCCTCTGGCTGTTGGCGTGATTGCTTTTGGCTCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CAA 90 bp GTTTTCTCCAGAGGACCTCACTGTTCCTGGAGGTGGCGCTGTACTGTGTCACTGGCTTTGTCAGTTTCTTaGGGAGCTCTATTTTCTGGT +
Preference number: 5 (lower is better)
Translates to: VFSRGPHCSWRWRCTVSLALSVS*GALFSG
Trigger: ACCAGAAAATAGAGCTCCCAAAGAAACTGACAAAGC...CAGTGACACAGTACAGCGCCACCTCCAGGAACAGTGAGGTCCTCTGGAGAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CAA 90 bp AAGGTCCAGGGAAGAACTAACATGGCTGACGTGGGCAGAACCCTCTGGTTGGCAGTCAAAGGGAGAATTTaGTGTTCTTCAGCGTACGAT +
Preference number: 5 (lower is better)
Translates to: KVQGRTNMADVGRTLWLAVKGRI*CSSAYD
Trigger: ATCGTACGCTGAAGAACACAAAATTCTCCCTTTGAC...TGCCAACCAGAGGGTTCTGCCCACGTCAGCCATGTTAGTTCTTCCCTGGACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 90 bp ATGCTGAGCAGCACAACCCACGTCAGCAAGTTAATCACGGTGCTGTaGATGCGAAGACTGTCTTCAGCATCATTAGCACATAAGCGAAGA +
Preference number: 5 (lower is better)
Translates to: MLSSTTHVSKLITVL*MRRLSSASLAHKRR
Trigger: TCTTCGCTTATGTGCTAATGATGCTGAAGACAGTCTTCGCATGCACAGCACCGTGATTAACTTGCTGACGTGGGTTGTGCTGCTCAGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CAA 90 bp ACCGATGCTACACCACGGGCTGAAACCATGCTTCAACTACGTCCCTCGAGCATTCACTTGCTGACCACGTaGACTTTAAAAGCTTGGTAT +
Preference number: 5 (lower is better)
Translates to: TDATPRAETMLQLRPSSIHLLTT*TLKAWY
Trigger: ATACCAAGCTTTTAAAGTCAACGTGGTCAGCAAGTG...AATGCTCGAGGGACGTAGTTGAAGCATGGTTTCAGCCCGTGGTGTAGCATCGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CAA 90 bp GAGTCCTTAAGACAGAGGCCACAGCATCCCTTCACTAATCTGTCAGATACGACAAGAAATGCCAGGGGTTaGCATGGGTCAGGACTAAGT +
Preference number: 5 (lower is better)
Translates to: ESLRQRPQHPFTNLSDTTRNARG*HGSGLS
Trigger: ACTTAGTCCTGACCCATGCAAACCCCTGGCATTTCT...TGTCGTATCTGACAGATTAGTGAAGGGATGCTGTGGCCTCTGTCTTAAGGACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CAA 90 bp ACCGATGCTACACCACGGGCTGAAACCATGCTTCAACTACGTCCCTCGAGCATTAGTTCTTCATTGAAGTaGACACTGAAGAAGTCGAAG +
Preference number: 5 (lower is better)
Translates to: TDATPRAETMLQLRPSSISSSLK*TLKKSK
Trigger: CTTCGACTTCTTCAGTGTCAACTTCAATGAAGAACT...AATGCTCGAGGGACGTAGTTGAAGCATGGTTTCAGCCCGTGGTGTAGCATCGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CAA 90 bp GTTTTCTCCAGAGGACCTCACTGTTCCTGGAGGTGGCGCTGTACTGTGTCACTGACAAATGGGTCAACTTaGTATGGTTTGGCTTCTTTA +
Preference number: 5 (lower is better)
Translates to: VFSRGPHCSWRWRCTVSLTNGST*YGLASL
Trigger: TAAAGAAGCCAAACCATACAAAGTTGACCCATTTGT...CAGTGACACAGTACAGCGCCACCTCCAGGAACAGTGAGGTCCTCTGGAGAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 90 bp CTCGTGTACAAACTTGGTCTGCTTCTGAAGGCTTCCACCATACAATaGCACCAGTTCTTCATTGAAGTTGACACTGAAGAAGTCGAAGTG +
Preference number: 5 (lower is better)
Translates to: LVYKLGLLLKASTIQ*HQFFIEVDTEEVEV
Trigger: CACTTCGACTTCTTCAGTGTCAACTTCAATGAAGAACTGGTGGCATTGTATGGTGGAAGCCTTCAGAAGCAGACCAAGTTTGTACACGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS TCA 90 bp TGGGAGACGGTCTTCAGCAATTTACTGGACTTTACTGAAACAGTGTaGGTGTTTCCGAGAATCGCTATAGCTGGAATAAGGAGAAATGCC +
Preference number: 5 (lower is better)
Translates to: WETVFSNLLDFTETV*VFPRIAIAGIRRNA
Trigger: GGCATTTCTCCTTATTCCAGCTATAGCGATTCTCGGAAACACTCACACTGTTTCAGTAAAGTCCAGTAAATTGCTGAAGACCGTCTCCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS TCA 90 bp AAGTGGGAACTGGGAGACGGTCTTCAGCAATTTACTGGACTTTACTaGAACAGTGTGAGTGTTTCCGAGAATCGCTATAGCTGGAATAAG +
Preference number: 5 (lower is better)
Translates to: KWELGDGLQQFTGLY*NSVSVSENRYSWNK
Trigger: CTTATTCCAGCTATAGCGATTCTCGGAAACACTCACACTGTTTCAGTAAAGTCCAGTAAATTGCTGAAGACCGTCTCCCAGTTCCCACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 90 bp AGTTCAGCAGGTCTTTTCAGAGCTAGCCACAATGAAGAAAGAAGCTaGACAGATGTAGAAGAGAGTAGACCACTCCAGTATGCAGTACAT +
Preference number: 5 (lower is better)
Translates to: SSAGLFRASHNEERS*TDVEESRPLQYAVH
Trigger: ATGTACTGCATACTGGAGTGGTCTACTCTCTTCTACATCTGTGCAGCTTCTTTCTTCATTGTGGCTAGCTCTGAAAAGACCTGCTGAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CAA 90 bp GAGTCCTTAAGACAGAGGCCACAGCATCCCTTCACTAATCTGTCAGATACGACATACCTGTCCAAGTATTaGTGGGAAGGAAGTCTTAAT +
Preference number: 5 (lower is better)
Translates to: ESLRQRPQHPFTNLSDTTYLSKY*WEGSLN
Trigger: ATTAAGACTTCCTTCCCACAAATACTTGGACAGGTA...TGTCGTATCTGACAGATTAGTGAAGGGATGCTGTGGCCTCTGTCTTAAGGACTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS TCA 90 bp TTGAGAATCGCTTTAATGCACTCGTGTACAAACTTGGTCTGCTTCTaGAGGCTTCCACCATACAATGCCACCAGTTCTTCATTGAAGTTG +
Preference number: 5 (lower is better)
Translates to: LRIALMHSCTNLVCF*RLPPYNATSSSLKL
Trigger: CAACTTCAATGAAGAACTGGTGGCATTGTATGGTGGAAGCCTTCAGAAGCAGACCAAGTTTGTACACGAGTGCATTAAAGCGATTCTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 90 bp GAAGTCGAAGTGGTACTTGAAGTCGATGTCTTCTGCTTTCCTAAGTaGAATAGAGCCGATAGATCGAACTTGCTTATAGCTTCCAGCATT +
Preference number: 5 (lower is better)
Translates to: EVEVVLEVDVFCFPK*NRADRSNLLIASSI
Trigger: AATGCTGGAAGCTATAAGCAAGTTCGATCTATCGGCTCTATTGCACTTAGGAAAGCAGAAGACATCGACTTCAAGTACCACTTCGACTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CAA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACATGCTGGATAACGCTTaGTCAGTTTCTTTGGGAGCT +
Preference number: 5 (lower is better)
Translates to: TKNRYTLIPERRLKANIHMLDNA*SVSLGA
Trigger: AGCTCCCAAAGAAACTGACAAAGCGTTATCCAGCAT...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CAA 90 bp ACCAAAAATCGCTACACGTTAATACCTGAGCGGAGACTGAAGGCAAATATTCACCTGGTTATTTCTTCTTaGCTTCCAGTGCACTTGCTG +
Preference number: 5 (lower is better)
Translates to: TKNRYTLIPERRLKANIHLVISS*LPVHLL
Trigger: CAGCAAGTGCACTGGAAGCAAAGAAGAAATAACCAG...GTGAATATTTGCCTTCAGTCTCCGCTCAGGTATTAACGTGTAGCGATTTTTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS TCA 90 bp AAAATTTTTCAGTGTAAGCAATGCTCTGGCAACAAGGCCACCCATTaGGTGACCAATTATTGCCACACTTGTAGGAGCAAATTCTTGACC +
Preference number: 5 (lower is better)
Translates to: KIFQCKQCSGNKATH*VTNYCHTCRSKFLT
Trigger: GGTCAAGAATTTGCTCCTACAAGTGTGGCAATAATTGGTCACTCAATGGGTGGCCTTGTTGCCAGAGCATTGCTTACACTGAAAAATTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS TCA 90 bp CCAACTCACTATGAGAAAGACAACTGTCAAAACAGGCAAGTCTGGTaGCATCACCTTGATATCTTTAGGAAGTTCAGCAGGTCTTTTCAG +
Preference number: 5 (lower is better)
Translates to: PTHYEKDNCQNRQVW*HHLDIFRKFSRSFQ
Trigger: CTGAAAAGACCTGCTGAACTTCCTAAAGATATCAAGGTGATGTCACCAGACTTGCCTGTTTTGACAGTTGTCTTTCTCATAGTGAGTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 90 bp GTTGACACTGAAGAAGTCGAAGTGGTACTTGAAGTCGATGTCTTCTaGTTTCCTAAGTGCAATAGAGCCGATAGATCGAACTTGCTTATA +
Preference number: 5 (lower is better)
Translates to: VDTEEVEVVLEVDVF*FPKCNRADRSNLLI
Trigger: TATAAGCAAGTTCGATCTATCGGCTCTATTGCACTTAGGAAAGCAGAAGACATCGACTTCAAGTACCACTTCGACTTCTTCAGTGTCAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 90 bp AGTGTGAGTGTTTCCGAGAATCGCTATAGCTGGAATAAGGAGAAATaGCAGGGGTTTGCATGGGTCAGGACTAAGTTTAAAATAATACCT +
Preference number: 5 (lower is better)
Translates to: SVSVSENRYSWNKEK*QGFAWVRTKFKIIP
Trigger: AGGTATTATTTTAAACTTAGTCCTGACCCATGCAAACCCCTGGCATTTCTCCTTATTCCAGCTATAGCGATTCTCGGAAACACTCACACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CCA 90 bp AATGCCACCAGTTCTTCATTGAAGTTGACACTGAAGAAGTCGAAGTaGTACTTGAAGTCGATGTCTTCTGCTTTCCTAAGTGCAATAGAG +
Preference number: 5 (lower is better)
Translates to: NATSSSLKLTLKKSK*YLKSMSSAFLSAIE
Trigger: CTCTATTGCACTTAGGAAAGCAGAAGACATCGACTTCAAGTACCACTTCGACTTCTTCAGTGTCAACTTCAATGAAGAACTGGTGGCATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CAA 90 bp CAAAAGAAACACCACAGGGAAGGTTTCAACTGTAGTAACCAGACATCTACACCATGTAGTATAGGCCGTTaGTATTTAACGTCACCTTCC +
Preference number: 5 (lower is better)
Translates to: QKKHHREGFNCSNQTSTPCSIGR*YLTSPS
Trigger: GGAAGGTGACGTTAAATACAAACGGCCTATACTACA...TGGTGTAGATGTCTGGTTACTACAGTTGAAACCTTCCCTGTGGTGTTTCTTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CAA 90 bp CACATCTCCAGCAAAGTTAGAGCAGATACATTCCTACTTAGATATGTAAGTGTTCAACAAGGCCACCCATaGAGTGACCAATTATTGCCA +
Preference number: 5 (lower is better)
Translates to: HISSKVRADTFLLRYVSVQQGHP*SDQLLP
Trigger: TGGCAATAATTGGTCACTCAATGGGTGGCCTTGTTG...AACACTTACATATCTAAGTAGGAATGTATCTGCTCTAACTTTGCTGGAGATGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 90 bp AACAACCTTAAACACATAGTACAGATAAGACAGAAGTATGGCAAGTaGTCCACAAGTTGTCCAACTCACTATGAGAAAGACAACTGTCAA +
Preference number: 5 (lower is better)
Translates to: NNLKHIVQIRQKYGK*STSCPTHYEKDNCQ
Trigger: TTGACAGTTGTCTTTCTCATAGTGAGTTGGACAACTTGTGGAGCACTTGCCATACTTCTGTCTTATCTGTACTATGTGTTTAAGGTTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CAA 90 bp CAGCTAAGGGATACTAAAGTAAATGTGGGTCCATTGGTACTTAAAACTTTTATCTGTAGTCAACTGCAATaGTTTACACCACACGATGGA +
Preference number: 5 (lower is better)
Translates to: QLRDTKVNVGPLVLKTFICSQLQ*FTPHDG
Trigger: TCCATCGTGTGGTGTAAACAATTGCAGTTGACTACA...GATAAAAGTTTTAAGTACCAATGGACCCACATTTACTTTAGTATCCCTTAGCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CAA 90 bp GTGAGTTCTACATTTACTTTATCTGGTAAAGAAGATTTCCCGGAAGGAAGTAATCAAAAATCCAACTATTaGTATCCAGCATGGTGCTCT +
Preference number: 5 (lower is better)
Translates to: VSSTFTLSGKEDFPEGSNQKSNY*YPAWCS
Trigger: AGAGCACCATGCTGGATACAAATAGTTGGATTTTTG...ATTACTTCCTTCCGGGAAATCTTCTTTACCAGATAAAGTAAATGTAGAACTCAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS-3UTR CAA 90 bp GTGAGTTCTACATTTACTTTATCTGGTAAAGAAGATTTCCCGGAAGGAAGTAATTCTGGTGACATCACCTaGATATCTTTAGGAAGTTCA +
Preference number: 5 (lower is better)
Translates to: VSSTFTLSGKEDFPEGSNSGDIT*ISLGSS
Trigger: TGAACTTCCTAAAGATATCAAGGTGATGTCACCAGA...ATTACTTCCTTCCGGGAAATCTTCTTTACCAGATAAAGTAAATGTAGAACTCAC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CCA 72 bp GGAGCCAAAAGCAATCACGCCAACAGCCAGAGGAAGTaGGAACTGGGAGACGGTCTTCAGCAATTTACTGGA +
Preference number: 6 (lower is better)
Translates to: GAKSNHANSQRK*ELGDGLQQFTG
Trigger: TCCAGTAAATTGCTGAAGACCGTCTCCCAGTTCCCACTTCCTCTGGCTGTTGGCGTGATTGCTTTTGGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 72 bp TCTGGTACTCGGGGTACTCGAACATGTAGCTCATGCTaGACTTGTTTTCCTCGAAGCCGAAGAAGACATCCC +
Preference number: 6 (lower is better)
Translates to: SGTRGTRTCSSC*TCFPRSRRRHP
Trigger: GGGATGTCTTCTTCGGCTTCGAGGAAAACAAGTGCAGCATGAGCTACATGTTCGAGTACCCCGAGTACCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CCA 72 bp GTCAACTGCAATTGTTTACACCACACGATGGAGAGGTaGTCTGTTGAGACCCAGGTCTTAGGCACTGCTGAG +
Preference number: 6 (lower is better)
Translates to: VNCNCLHHTMER*SVETQVLGTAE
Trigger: CTCAGCAGTGCCTAAGACCTGGGTCTCAACAGACCACCTCTCCATCGTGTGGTGTAAACAATTGCAGTTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CCA 72 bp AGAGGAATGATCACAAAACACGGGACCCTGTATAAGTaGGAGGAGCCAAAAGCAATCACGCCAACAGCCAGA +
Preference number: 6 (lower is better)
Translates to: RGMITKHGTLYK*EEPKAITPTAR
Trigger: TCTGGCTGTTGGCGTGATTGCTTTTGGCTCCTCCCACTTATACAGGGTCCCGTGTTTTGTGATCATTCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 72 bp AGCACAACCCACGTCAGCAAGTTAATCACGGTGCTGTaGATGCGAAGACTGTCTTCAGCATCATTAGCACAT +
Preference number: 6 (lower is better)
Translates to: STTHVSKLITVL*MRRLSSASLAH
Trigger: ATGTGCTAATGATGCTGAAGACAGTCTTCGCATGCACAGCACCGTGATTAACTTGCTGACGTGGGTTGTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CCA 72 bp AAAGCAATCACGCCAACAGCCAGAGGAAGTGGGAACTaGGAGACGGTCTTCAGCAATTTACTGGACTTTACT +
Preference number: 6 (lower is better)
Translates to: KAITPTARGSGN*ETVFSNLLDFT
Trigger: AGTAAAGTCCAGTAAATTGCTGAAGACCGTCTCCCAGTTCCCACTTCCTCTGGCTGTTGGCGTGATTGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS TCA 72 bp CAGTGTAAGCAATGCTCTGGCAACAAGGCCACCCATTaGGTGACCAATTATTGCCACACTTGTAGGAGCAAA +
Preference number: 6 (lower is better)
Translates to: QCKQCSGNKATH*VTNYCHTCRSK
Trigger: TTTGCTCCTACAAGTGTGGCAATAATTGGTCACTCAATGGGTGGCCTTGTTGCCAGAGCATTGCTTACACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CAA 90 bp CTGCTGAGCTCACAACAGATAAGGCACTGGTGTAATGGCTCAATTTaGGTAGAAAAGTCAGTCCTGAACGAACTTGGTAATCCCGGAATC +
Preference number: 6 (lower is better)
Translates to: LLSSQQIRHWCNGSI*VEKSVLNELGNPGI
Trigger: GATTCCGGGATTACCAAGTTCGTTCAGGACTGACTTTTCTACCAAAATTGAGCCATTACACCAGTGCCTTATCTGTTGTGAGCTCAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS TCA 72 bp GCTTTAATGCACTCGTGTACAAACTTGGTCTGCTTCTaGAGGCTTCCACCATACAATGCCACCAGTTCTTCA +
Preference number: 6 (lower is better)
Translates to: ALMHSCTNLVCF*RLPPYNATSSS
Trigger: TGAAGAACTGGTGGCATTGTATGGTGGAAGCCTTCAGAAGCAGACCAAGTTTGTACACGAGTGCATTAAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS TCA 72 bp GTAAGCAATGCTCTGGCAACAAGGCCACCCATTGAGTaGCCAATTATTGCCACACTTGTAGGAGCAAATTCT +
Preference number: 6 (lower is better)
Translates to: VSNALATRPPIE*PIIATLVGANS
Trigger: AGAATTTGCTCCTACAAGTGTGGCAATAATTGGTCACTCAATGGGTGGCCTTGTTGCCAGAGCATTGCTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS TCA 72 bp CTGGGAGACGGTCTTCAGCAATTTACTGGACTTTACTaGAACAGTGTGAGTGTTTCCGAGAATCGCTATAGC +
Preference number: 6 (lower is better)
Translates to: LGDGLQQFTGLY*NSVSVSENRYS
Trigger: GCTATAGCGATTCTCGGAAACACTCACACTGTTTCAGTAAAGTCCAGTAAATTGCTGAAGACCGTCTCCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 72 bp AATCAACCCCTTGCCGGCACATGGAAGTGCTGTTTATaGAGCCAAAAATCCAACTATTTGTATCCAGCATGG +
Preference number: 6 (lower is better)
Translates to: NQPLAGTWKCCL*SQKSNYLYPAW
Trigger: CCATGCTGGATACAAATAGTTGGATTTTTGGCTGCATAAACAGCACTTCCATGTGCCGGCAAGGGGTTGATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CCA 72 bp GAAGTGGGAACTGGGAGACGGTCTTCAGCAATTTACTaGACTTTACTGAAACAGTGTGAGTGTTTCCGAGAA +
Preference number: 6 (lower is better)
Translates to: EVGTGRRSSAIY*TLLKQCECFRE
Trigger: TTCTCGGAAACACTCACACTGTTTCAGTAAAGTCCAGTAAATTGCTGAAGACCGTCTCCCAGTTCCCACTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 72 bp GAAGAAGTCGAAGTGGTACTTGAAGTCGATGTCTTCTaGTTTCCTAAGTGCAATAGAGCCGATAGATCGAAC +
Preference number: 6 (lower is better)
Translates to: EEVEVVLEVDVF*FPKCNRADRSN
Trigger: GTTCGATCTATCGGCTCTATTGCACTTAGGAAAGCAGAAGACATCGACTTCAAGTACCACTTCGACTTCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 72 bp GTTTCCGAGAATCGCTATAGCTGGAATAAGGAGAAATaGCAGGGGTTTGCATGGGTCAGGACTAAGTTTAAA +
Preference number: 6 (lower is better)
Translates to: VSENRYSWNKEK*QGFAWVRTKFK
Trigger: TTTAAACTTAGTCCTGACCCATGCAAACCCCTGGCATTTCTCCTTATTCCAGCTATAGCGATTCTCGGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CCA 72 bp CCAGTGCACTTGCTGACCACGTTGACTTTAAAAGCTTaGTATATCTGTCCAAAGTTCAGCAGCTCTATGTTG +
Preference number: 6 (lower is better)
Translates to: PVHLLTTLTLKA*YICPKFSSSML
Trigger: CAACATAGAGCTGCTGAACTTTGGACAGATATACCAAGCTTTTAAAGTCAACGTGGTCAGCAAGTGCACTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CAA 72 bp CTTCCACCATACAATGCCACCAGTTCTTCATTGAAGTaGACACTGAAGAAGTCGAAGTGGTACTTGAAGTCG +
Preference number: 6 (lower is better)
Translates to: LPPYNATSSSLK*TLKKSKWYLKS
Trigger: CGACTTCAAGTACCACTTCGACTTCTTCAGTGTCAACTTCAATGAAGAACTGGTGGCATTGTATGGTGGAAG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CAA 72 bp GGCTCCACCATGAAACCTAACTACCTGTCCAAGTATTaGTGGGAAGGAAGTCTTAATTGTCACCTCATACTG +
Preference number: 6 (lower is better)
Translates to: GSTMKPNYLSKY*WEGSLNCHLIL
Trigger: CAGTATGAGGTGACAATTAAGACTTCCTTCCCACAAATACTTGGACAGGTAGTTAGGTTTCATGGTGGAGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 72 bp GTGGTACTTGAAGTCGATGTCTTCTGCTTTCCTAAGTaGAATAGAGCCGATAGATCGAACTTGCTTATAGCT +
Preference number: 6 (lower is better)
Translates to: VVLEVDVFCFPK*NRADRSNLLIA
Trigger: AGCTATAAGCAAGTTCGATCTATCGGCTCTATTGCACTTAGGAAAGCAGAAGACATCGACTTCAAGTACCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 72 bp AAACTTGGTCTGCTTCTGAAGGCTTCCACCATACAATaGCACCAGTTCTTCATTGAAGTTGACACTGAAGAA +
Preference number: 6 (lower is better)
Translates to: KLGLLLKASTIQ*HQFFIEVDTEE
Trigger: TTCTTCAGTGTCAACTTCAATGAAGAACTGGTGGCATTGTATGGTGGAAGCCTTCAGAAGCAGACCAAGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CAA 72 bp ATAACTCATATGCTGGATAACGCTTTGTCAGTTTCTTaGGGAGCTCTATTTTCTGGTACTCGGGGTACTCGA +
Preference number: 6 (lower is better)
Translates to: ITHMLDNALSVS*GALFSGTRGTR
Trigger: TCGAGTACCCCGAGTACCAGAAAATAGAGCTCCCAAAGAAACTGACAAAGCGTTATCCAGCATATGAGTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CAA 72 bp CAAAGTTCAGCAGCTCTATGTTGTAGTATAGGCCGTTaGTATTTAACGTCACCTTCCTGGAAGACAGTCCAA +
Preference number: 6 (lower is better)
Translates to: QSSAALCCSIGR*YLTSPSWKTVQ
Trigger: TTGGACTGTCTTCCAGGAAGGTGACGTTAAATACAAACGGCCTATACTACAACATAGAGCTGCTGAACTTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CAA 72 bp TCCAGTGCACTTGCTGACCACGTTGACTTTAAAAGCTaGGTATATCTGTCCAAAGTTCAGCAGCTCTATGTT +
Preference number: 6 (lower is better)
Translates to: SSALADHVDFKS*VYLSKVQQLYV
Trigger: AACATAGAGCTGCTGAACTTTGGACAGATATACCAAGCTTTTAAAGTCAACGTGGTCAGCAAGTGCACTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CAA 90 bp CGTAAAGATATAACTCATATGCTGGATAACGCTTTGTCAGTTTCTTaGGGAGCTCTATTTTCTGGTACTCGGGGTACTCGAACATGTAGC +
Preference number: 6 (lower is better)
Translates to: RKDITHMLDNALSVS*GALFSGTRGTRTCS
Trigger: GCTACATGTTCGAGTACCCCGAGTACCAGAAAATAGAGCTCCCAAAGAAACTGACAAAGCGTTATCCAGCATATGAGTTATATCTTTACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CAA 90 bp ACCAGTTCTTCATTGAAGTTGACACTGAAGAAGTCGAAGTGGTACTaGAAGTCGATGTCTTCTGCTTTCCTAAGTGCAATAGAGCCGATA +
Preference number: 6 (lower is better)
Translates to: TSSSLKLTLKKSKWY*KSMSSAFLSAIEPI
Trigger: TATCGGCTCTATTGCACTTAGGAAAGCAGAAGACATCGACTTCAAGTACCACTTCGACTTCTTCAGTGTCAACTTCAATGAAGAACTGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS TCA 72 bp GTCTTCAGCAATTTACTGGACTTTACTGAAACAGTGTaGGTGTTTCCGAGAATCGCTATAGCTGGAATAAGG +
Preference number: 6 (lower is better)
Translates to: VFSNLLDFTETV*VFPRIAIAGIR
Trigger: CCTTATTCCAGCTATAGCGATTCTCGGAAACACTCACACTGTTTCAGTAAAGTCCAGTAAATTGCTGAAGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 72 bp TCAATAAGATCAAAGAACGCTCGAATTGTAGTCAACTaGAATTGTTTACACCACACGATGGAGAGGTGGTCT +
Preference number: 6 (lower is better)
Translates to: SIRSKNARIVVN*NCLHHTMERWS
Trigger: AGACCACCTCTCCATCGTGTGGTGTAAACAATTGCAGTTGACTACAATTCGAGCGTTCTTTGATCTTATTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CCA 72 bp TCCACCATGAAACCTAACTACCTGTCCAAGTATTTGTaGGAAGGAAGTCTTAATTGTCACCTCATACTGACA +
Preference number: 6 (lower is better)
Translates to: STMKPNYLSKYL*EGSLNCHLILT
Trigger: TGTCAGTATGAGGTGACAATTAAGACTTCCTTCCCACAAATACTTGGACAGGTAGTTAGGTTTCATGGTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CAA 90 bp ATACTGGTTATTTCTTCTTTGCTTCCAGTGCACTTGCTGACCACGTaGACTTTAAAAGCTTGGTATATCTGTCCAAAGTTCAGCAGCTCT +
Preference number: 6 (lower is better)
Translates to: ILVISSLLPVHLLTT*TLKAWYICPKFSSS
Trigger: AGAGCTGCTGAACTTTGGACAGATATACCAAGCTTTTAAAGTCAACGTGGTCAGCAAGTGCACTGGAAGCAAAGAAGAAATAACCAGTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS GCA 72 bp AAACACATAGTACAGATAAGACAGAAGTATGGCAAGTaGTCCACAAGTTGTCCAACTCACTATGAGAAAGAC +
Preference number: 6 (lower is better)
Translates to: KHIVQIRQKYGK*STSCPTHYEKD
Trigger: GTCTTTCTCATAGTGAGTTGGACAACTTGTGGAGCACTTGCCATACTTCTGTCTTATCTGTACTATGTGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CCA 72 bp AGTTCTTCATTGAAGTTGACACTGAAGAAGTCGAAGTaGTACTTGAAGTCGATGTCTTCTGCTTTCCTAAGT +
Preference number: 6 (lower is better)
Translates to: SSSLKLTLKKSK*YLKSMSSAFLS
Trigger: ACTTAGGAAAGCAGAAGACATCGACTTCAAGTACCACTTCGACTTCTTCAGTGTCAACTTCAATGAAGAACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CCA 72 bp AAGAGAATCAAGGATACAAGAGGGAAACACATACTCTaGCTAGTCAAAACGATGGCATCTAATTCCGGTAAT +
Preference number: 6 (lower is better)
Translates to: KRIKDTRGKHIL*LVKTMASNSGN
Trigger: ATTACCGGAATTAGATGCCATCGTTTTGACTAGCCAGAGTATGTGTTTCCCTCTTGTATCCTTGATTCTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CAA 72 bp TCATTGAAGTTGACACTGAAGAAGTCGAAGTGGTACTaGAAGTCGATGTCTTCTGCTTTCCTAAGTGCAATA +
Preference number: 6 (lower is better)
Translates to: SLKLTLKKSKWY*KSMSSAFLSAI
Trigger: TATTGCACTTAGGAAAGCAGAAGACATCGACTTCAAGTACCACTTCGACTTCTTCAGTGTCAACTTCAATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CAA 72 bp TCACAACAGATAAGGCACTGGTGTAATGGCTCAATTTaGGTAGAAAAGTCAGTCCTGAACGAACTTGGTAAT +
Preference number: 6 (lower is better)
Translates to: SQQIRHWCNGSI*VEKSVLNELGN
Trigger: ATTACCAAGTTCGTTCAGGACTGACTTTTCTACCAAAATTGAGCCATTACACCAGTGCCTTATCTGTTGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CAA 72 bp ATTTCTTCTTTGCTTCCAGTGCACTTGCTGACCACGTaGACTTTAAAAGCTTGGTATATCTGTCCAAAGTTC +
Preference number: 6 (lower is better)
Translates to: ISSLLPVHLLTT*TLKAWYICPKF
Trigger: GAACTTTGGACAGATATACCAAGCTTTTAAAGTCAACGTGGTCAGCAAGTGCACTGGAAGCAAAGAAGAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5
CDS CCA 72 bp TATAGCTGGAATAAGGAGAAATGCCAGGGGTTTGCATaGGTCAGGACTAAGTTTAAAATAATACCTAAGGTT +
Preference number: 6 (lower is better)
Translates to: YSWNKEKCQGFA*VRTKFKIIPKV
Trigger: AACCTTAGGTATTATTTTAAACTTAGTCCTGACCCATGCAAACCCCTGGCATTTCTCCTTATTCCAGCTATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097739.5