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Pregenerated sensors for PGAM1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000011752

Ensembl transcript IDs: ENSMUST00000011896.8

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TACCTAACTGCAGGAAGAGTGCAGGACAGGTTCCAGGGACAAAACTaGACTGCAGCTTTTCATTGGTCACACCACAGCACAGTTCCTCCC +
Preference number: 1 (lower is better)
Translates to: YLTAGRVQDRFQGQN*TAAFHWSHHSTVPP
Trigger: GGGAGGAACTGTGCTGTGGTGTGACCAATGAAAAGCTGCAGTCCAGTTTTGTCCCTGGAACCTGTCCTGCACTCTTCCTGCAGTTAGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011896.8
3UTR GCA 90 bp AACTGCAGGAAGAGTGCAGGACAGGTTCCAGGGACAAAACTGGACTaGAGCTTTTCATTGGTCACACCACAGCACAGTTCCTCCCTGAAT +
Preference number: 1 (lower is better)
Translates to: NCRKSAGQVPGTKLD*SFSLVTPQHSSSLN
Trigger: ATTCAGGGAGGAACTGTGCTGTGGTGTGACCAATGAAAAGCTGCAGTCCAGTTTTGTCCCTGGAACCTGTCCTGCACTCTTCCTGCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011896.8
3UTR-3UTR GCA 90 bp AGGGACAAAACTGGACTGCAGCTTTTCATTGGTCACACCACAGCACAGTTCCTCCCACAGGCCCCCATCTaGAGCTACAACTTAAACTTA +
Preference number: 2 (lower is better)
Translates to: RDKTGLQLFIGHTTAQFLPQAPI*SYNLNL
Trigger: TAAGTTTAAGTTGTAGCTGCAGATGGGGGCCTGTGG...GAGGAACTGTGCTGTGGTGTGACCAATGAAAAGCTGCAGTCCAGTTTTGTCCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000011896.8
3UTR-3UTR TCA 90 bp TACTTCACCTCTACAAAACAAGGCCAAGGGATCCAAACACAGCAAGAGGTACAATTTATCCCACTGATATaGGGAATGGCTTATTTTCTG +
Preference number: 2 (lower is better)
Translates to: YFTSTKQGQGIQTQQEVQFIPLI*GMAYFL
Trigger: CAGAAAATAAGCCATTCCTCATATCAGTGGGATAAA...TTGTACCTCTTGCTGTGTTTGGATCCCTTGGCCTTGTTTTGTAGAGGTGAAGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011896.8
3UTR CCA 72 bp GCAGGAAGAGTGCAGGACAGGTTCCAGGGACAAAACTaGACTGCAGCTTTTCATTGGTCACACCACAGCACA +
Preference number: 3 (lower is better)
Translates to: AGRVQDRFQGQN*TAAFHWSHHST
Trigger: TGTGCTGTGGTGTGACCAATGAAAAGCTGCAGTCCAGTTTTGTCCCTGGAACCTGTCCTGCACTCTTCCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011896.8
3UTR CCA 72 bp CTAAGAAAAACTATAGTTACTATCTCTCAACTCTCCTaGTACAGGGAGCTGTCCCTCGATGTGGTCCGAGAA +
Preference number: 3 (lower is better)
Translates to: LRKTIVTISQLS*YRELSLDVVRE
Trigger: TTCTCGGACCACATCGAGGGACAGCTCCCTGTACCAGGAGAGTTGAGAGATAGTAACTATAGTTTTTCTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000011896.8
3UTR CCA 72 bp GTTAAAAATCACCATGAGGTTACTTCCACTCTCCACTaGAATGACTATGCCCCCAGTTACCTAACTGCAGGA +
Preference number: 3 (lower is better)
Translates to: VKNHHEVTSTLH*NDYAPSYLTAG
Trigger: TCCTGCAGTTAGGTAACTGGGGGCATAGTCATTCCAGTGGAGAGTGGAAGTAACCTCATGGTGATTTTTAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000011896.8
3UTR-3UTR CAA 90 bp AGAGAGAAATTAGGGTTAAAAATCACCATGAGGTTACTTCCACTCTCCACTGGAGACTGCAGCTTTTCATaGGTCACACCACAGCACAGT +
Preference number: 3 (lower is better)
Translates to: REKLGLKITMRLLPLSTGDCSFS*VTPQHS
Trigger: ACTGTGCTGTGGTGTGACCAATGAAAAGCTGCAGTC...TCCAGTGGAGAGTGGAAGTAACCTCATGGTGATTTTTAACCCTAATTTCTCTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000011896.8
CDS-3UTR GCA 90 bp ACAGGTTCCAGGGACAAAACTGGACTGCAGCTTTTCATTGGTCACACCACAGCATGCCCCGAAGGCTGTTaGCGTGGGCGGCAATCAAGA +
Preference number: 4 (lower is better)
Translates to: TGSRDKTGLQLFIGHTTACPEGC*RGRQSR
Trigger: TCTTGATTGCCGCCCACGGCAACAGCCTTCGGGGCA...TGCTGTGGTGTGACCAATGAAAAGCTGCAGTCCAGTTTTGTCCCTGGAACCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000011896.8
3UTR CAA 72 bp CAGGTTCCAGGGACAAAACTGGACTGCAGCTTTTCATaGGTCACACCACAGCACAGTTCCTCCCTGAATTCT +
Preference number: 4 (lower is better)
Translates to: QVPGTKLDCSFS*VTPQHSSSLNS
Trigger: AGAATTCAGGGAGGAACTGTGCTGTGGTGTGACCAATGAAAAGCTGCAGTCCAGTTTTGTCCCTGGAACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011896.8
CDS-3UTR CAA 90 bp CAGGACAGGTTCCAGGGACAAAACTGGACTGCAGCTTTTCATTGGTCACACCACATGCCCCGAAGGCTGTaGCCGTGGGCGGCAATCAAG +
Preference number: 5 (lower is better)
Translates to: QDRFQGQNWTAAFHWSHHMPRRL*PWAAIK
Trigger: CTTGATTGCCGCCCACGGCAACAGCCTTCGGGGCAT...GTGGTGTGACCAATGAAAAGCTGCAGTCCAGTTTTGTCCCTGGAACCTGTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000011896.8