Pregenerated sensors for PGA5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024738Ensembl transcript IDs: ENSMUST00000025647.7
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGAACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTaGATGAAATATGCCCTGTGTGCACTCAGTGTGTTGAGGGGCATG | + |
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Preference number: 1 (lower is better) Translates to: RTGLCRAPHSLGSAL*MKYALCALSVLRGM Trigger: CATGCCCCTCAACACACTGAGTGCACACAGGGCATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| 3UTR GCA 90 bp | TGGCTTTGTGAATGCAGTCTTTATTCCTTACACAGAACAGGGCTTTaGAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATAT | + |
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Preference number: 1 (lower is better) Translates to: WLCECSLYSLHRTGL*RAPHSLGSALWMKY Trigger: ATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGTTCTGTGTAAGGAATAAAGACTGCATTCACAAAGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| 3UTR CCA 72 bp | CTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTaGATGAAATATGCCCTGTGTGCACTCAGTGTGTTG | + |
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Preference number: 3 (lower is better) Translates to: LCRAPHSLGSAL*MKYALCALSVL Trigger: CAACACACTGAGTGCACACAGGGCATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| 3UTR GCA 72 bp | GAATGCAGTCTTTATTCCTTACACAGAACAGGGCTTTaGAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGG | + |
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Preference number: 3 (lower is better) Translates to: ECSLYSLHRTGL*RAPHSLGSALW Trigger: CCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGTTCTGTGTAAGGAATAAAGACTGCATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR CCA 90 bp | CCTTACACAGAACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTCCTGAAGGCCAAGGTTaGGGTATCCCAGCCCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: PYTEQGFAELPIAWDQLSPEGQG*GIPAPG Trigger: TCCTGGGGCTGGGATACCCCAACCTTGGCCTTCAGG...AGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGTTCTGTGTAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR CCA 90 bp | ACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATCTCAGGCCAAAGGCCTaGGCCACAACCGTGAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: TGLCRAPHSLGSALWMKYLRPKA*ATTVRS Trigger: GGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAG...ATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR TCA 90 bp | CTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATGCCCTGTATCCAAGACAACCCTaGACTCCTGAGGGGGCGTGC | + |
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Preference number: 4 (lower is better) Translates to: LCRAPHSLGSALWMKYALYPRQP*TPEGAC Trigger: GCACGCCCCCTCAGGAGTTCAGGGTTGTCTTGGATA...CAGGGCATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR TCA 90 bp | CTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATGCCCTGAAGACCGAAGCGGGTTaGAGGCTTTGTGGTGAGCGC | + |
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Preference number: 4 (lower is better) Translates to: LCRAPHSLGSALWMKYALKTEAG*RLCGER Trigger: GCGCTCACCACAAAGCCTTCAACCCGCTTCGGTCTT...CAGGGCATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR CCA 90 bp | TTACACAGAACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGGCCAGTAGCTGGGCTTaGACACTGGTACCCAGTGAA | + |
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Preference number: 4 (lower is better) Translates to: LHRTGLCRAPHSLGSALWASSWA*TLVPSE Trigger: TTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGC...CCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGTTCTGTGTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR TCA 90 bp | GCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATGCCCTGTGTGCACTCATTCACAGGTCGGCCTaGGACCAGGAAAGTGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: APHSLGSALWMKYALCALIHRSA*DQESGR Trigger: TCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAAT...GAGTGCACACAGGGCATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR TCA 90 bp | TGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATGCCCTGTGTACGGGTGTGATTCCCTaGAGGCCAAGGTTGGGGTAT | + |
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Preference number: 4 (lower is better) Translates to: CRAPHSLGSALWMKYALCTGVIP*RPRLGY Trigger: ATACCCCAACCTTGGCCTTCAGGGAATCACACCCGT...ACACAGGGCATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR TCA 90 bp | TACACAGAACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGACACCATCACAGGCAATaGCCTCCCCATTCATGGAGA | + |
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Preference number: 4 (lower is better) Translates to: YTEQGFAELPIAWDQLSGHHHRQ*PPHSWR Trigger: TCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTG...TCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGTTCTGTGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR CCA 90 bp | CCTTACACAGAACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTCTAATTGCCAGTAGCTaGGCTTGGACACTGGTACCC | + |
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Preference number: 4 (lower is better) Translates to: PYTEQGFAELPIAWDQLSLIASS*AWTLVP Trigger: GGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAG...AGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGTTCTGTGTAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR CCA 90 bp | ACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATGGCACTGGCTGGCACTaGGTAGGTAACACTGCCGAT | + |
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Preference number: 4 (lower is better) Translates to: TGLCRAPHSLGSALWMKYGTGWH*VGNTAD Trigger: ATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCC...ATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR TCA 90 bp | ACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATTTTGACCAAGCACTCTaGGAGGGCCACAAGCCCAAG | + |
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Preference number: 4 (lower is better) Translates to: TGLCRAPHSLGSALWMKYFDQAL*EGHKPK Trigger: CTTGGGCTTGTGGCCCTCTCAGAGTGCTTGGTCAAA...ATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR TCA 90 bp | CCTTACACAGAACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTTGGTACCCACAGGACTaGAGATCCAGTATCCAAGAC | + |
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Preference number: 4 (lower is better) Translates to: PYTEQGFAELPIAWDQLSWYPQD*RSSIQD Trigger: GTCTTGGATACTGGATCTTCAGTCCTGTGGGTACCA...AGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGTTCTGTGTAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR GCA 90 bp | TGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATGCCCTGTGTCTGATGGGTCATCCATaGCCTCCTCAAAGTTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: CRAPHSLGSALWMKYALCLMGHP*PPQSCS Trigger: GGAGCAACTTTGAGGAGGGCATGGATGACCCATCAG...ACACAGGGCATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR CCA 90 bp | TTACACAGAACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGAAGGCAAAGAGATTCTaGGGGATGAGGCCTTGTAGC | + |
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Preference number: 4 (lower is better) Translates to: LHRTGLCRAPHSLGSALWKAKRF*GMRPCS Trigger: GCTACAAGGCCTCATCCCCCAGAATCTCTTTGCCTT...CCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGTTCTGTGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR CCA 90 bp | TACACAGAACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGAGTGTCCATAATACCTTaGCAGCCACCATCACAGGCA | + |
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Preference number: 4 (lower is better) Translates to: YTEQGFAELPIAWDQLSGVSIIP*QPPSQA Trigger: TGCCTGTGATGGTGGCTGCCAAGGTATTATGGACAC...TCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGTTCTGTGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR CCA 90 bp | CTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATGCCCTGGATGTAGGCACTGGCTaGCACTGGGTAGGTAACACT | + |
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Preference number: 4 (lower is better) Translates to: LCRAPHSLGSALWMKYALDVGTG*HWVGNT Trigger: AGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATC...CAGGGCATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR TCA 90 bp | CTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATGCCCTGCCCGATCAAACACGGTaGAATACAGCCTCAGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: LCRAPHSLGSALWMKYALPDQTR*NTASGR Trigger: TCTTCCTGAGGCTGTATTTCACCGTGTTTGATCGGG...CAGGGCATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR GCA 90 bp | TGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATGCCCTGTGTCACCTAGCATCAGCATaGTGCCCTTTTCATCCTTGC | + |
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Preference number: 4 (lower is better) Translates to: CRAPHSLGSALWMKYALCHLASA*CPFHPC Trigger: GCAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTG...ACACAGGGCATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR GCA 90 bp | CTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATGCCCTGTGCCCTCCTCAAAGTTaGTCCTGCAATTGTGTGACC | + |
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Preference number: 4 (lower is better) Translates to: LCRAPHSLGSALWMKYALCPPQS*SCNCVT Trigger: GGTCACACAATTGCAGGAGCAACTTTGAGGAGGGCA...CAGGGCATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR GCA 90 bp | ACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATCTAGCATCAGCATGCTaGCCTTTTCATCCTTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: TGLCRAPHSLGSALWMKYLASAC*PFHPCC Trigger: GCAGCAAGGATGAAAAGGGCAGCATGCTGATGCTAG...ATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR TCA 90 bp | CCTTACACAGAACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTAGACAGCATATTCCATaGAAATGCCAGGTTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: PYTEQGFAELPIAWDQLSRQHIP*KCQVLP Trigger: TGGAAGAACCTGGCATTTTCATGGAATATGCTGTCT...AGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGTTCTGTGTAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR CCA 90 bp | CTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATGCCCTGGCACCAATTAGATTCTaGATGTTAACGATGGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: LCRAPHSLGSALWMKYALAPIRF*MLTMEL Trigger: AAGCTCCATCGTTAACATCCAGAATCTAATTGGTGC...CAGGGCATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS TCA 90 bp | AGCGCAGGCTGGGCTGGAGCAATAGATGGATGGTACCCACAGGACTaGAGATCCAGTATCCAAGACAACCCTGAACTCCTGAGGGGGCGT | + |
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Preference number: 5 (lower is better) Translates to: SAGWAGAIDGWYPQD*RSSIQDNPELLRGR Trigger: ACGCCCCCTCAGGAGTTCAGGGTTGTCTTGGATACTGGATCTTCAGTCCTGTGGGTACCATCCATCTATTGCTCCAGCCCAGCCTGCGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS TCA 90 bp | ATACAGCCTCAGGAAGACATCCCCCAGCACCCACATCTCAGGGTCTaGTGGGTCATCCATGCCCTCCTCAAAGTTGCTCCTGCAATTGTG | + |
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Preference number: 5 (lower is better) Translates to: IQPQEDIPQHPHLRV*WVIHALLKVAPAIV Trigger: CACAATTGCAGGAGCAACTTTGAGGAGGGCATGGATGACCCATCAGACCCTGAGATGTGGGTGCTGGGGGATGTCTTCCTGAGGCTGTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS TCA 90 bp | CAGCAGGAGCCAGACCAATCCTGTTATTTGCCCGATCAAACACGGTaGAATACAGCCTCAGGAAGACATCCCCCAGCACCCACATCTCAG | + |
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Preference number: 5 (lower is better) Translates to: QQEPDQSCYLPDQTR*NTASGRHPPAPTSQ Trigger: CTGAGATGTGGGTGCTGGGGGATGTCTTCCTGAGGCTGTATTTCACCGTGTTTGATCGGGCAAATAACAGGATTGGTCTGGCTCCTGCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS CCA 90 bp | CCTCCCCATTCATGGAGATGCTATCCACAGCTAATTGCCAGTAGCTaGGCTTGGACACTGGTACCCAGTGAAGCTCTCCATGGTAGTAGG | + |
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Preference number: 5 (lower is better) Translates to: PPHSWRCYPQLIASS*AWTLVPSEALHGSR Trigger: CCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAGCATCTCCATGAATGGGGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR CAA 90 bp | CTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATGCCCTGCCGTCACCAGAAGCCTaGGCACCAATTAGATTCTGG | + |
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Preference number: 5 (lower is better) Translates to: LCRAPHSLGSALWMKYALPSPEA*APIRFW Trigger: CCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGG...CAGGGCATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR CAA 90 bp | CCTTACACAGAACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTATATCAGGCAGGGTGTaGATGGTGTCACACTTGAGG | + |
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Preference number: 5 (lower is better) Translates to: PYTEQGFAELPIAWDQLSISGRV*MVSHLR Trigger: CCTCAAGTGTGACACCATCAACACCCTGCCTGATAT...AGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGTTCTGTGTAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR CAA 90 bp | TACACAGAACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGAATGCCCTCCTCAAAGTaGCTCCTGCAATTGTGTGAC | + |
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Preference number: 5 (lower is better) Translates to: YTEQGFAELPIAWDQLSGMPSSK*LLQLCD Trigger: GTCACACAATTGCAGGAGCAACTTTGAGGAGGGCAT...TCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGTTCTGTGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR CAA 90 bp | TGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATGCCCTGTGTGTAATCCTTCAGCACTaGGCTTTCCCGCAGGTTTTC | + |
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Preference number: 5 (lower is better) Translates to: CRAPHSLGSALWMKYALCVILQH*AFPQVF Trigger: GAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTAC...ACACAGGGCATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR CAA 90 bp | ACAGGGCTTTGCAGAGCTCCCCATAGCCTGGGATCAGCTCTCTGGATGAAATATTGTGTCCATAATACCTaGGCAGCCACCATCACAGGC | + |
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Preference number: 5 (lower is better) Translates to: TGLCRAPHSLGSALWMKYCVHNT*AATITG Trigger: GCCTGTGATGGTGGCTGCCAAGGTATTATGGACACA...ATATTTCATCCAGAGAGCTGATCCCAGGCTATGGGGAGCTCTGCAAAGCCCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS GCA 90 bp | CTCCATGGTAGTAGGAGGGATCCACTCCACCTAGCATCAGCATGCTaGCCTTTTCATCCTTGCTGCTCAAGTAGAAGGCAAAGAGATTCT | + |
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Preference number: 5 (lower is better) Translates to: LHGSRRDPLHLASAC*PFHPCCSSRRQRDS Trigger: AGAATCTCTTTGCCTTCTACTTGAGCAGCAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS-3UTR CAA 90 bp | GTGAATGCAGTCTTTATTCCTTACACAGAACAGGGCTTTGCAGAGCTCCCCATACCTTGTAGCCACAGGTaGTCAAAGACGGGTGTGATT | + |
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Preference number: 5 (lower is better) Translates to: VNAVFIPYTEQGFAELPIPCSHR*SKTGVI Trigger: AATCACACCCGTCTTTGACAACCTGTGGCTACAAGG...TATGGGGAGCTCTGCAAAGCCCTGTTCTGTGTAAGGAATAAAGACTGCATTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS TCA 72 bp | GGCCTGAGACCAGGAAAGTGGAAGACCGAAGCGGGTTaGAGGCTTTGTGGTGAGCGCAGGCTGGGCTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: GLRPGKWKTEAG*RLCGERRLGWS Trigger: GCTCCAGCCCAGCCTGCGCTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS CCA 72 bp | CCGAAGCGGGTTGAAGGCTTTGTGGTGAGCGCAGGCTaGGCTGGAGCAATAGATGGATGGTACCCACAGGAC | + |
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Preference number: 6 (lower is better) Translates to: PKRVEGFVVSAG*AGAIDGWYPQD Trigger: GTCCTGTGGGTACCATCCATCTATTGCTCCAGCCCAGCCTGCGCTCACCACAAAGCCTTCAACCCGCTTCGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS CCA 72 bp | AAAATGCCAGGTTCTTCCAGGCTCAGGCCAAAGGCCTaGGCCACAACCGTGAGGTCCCCAATCCTGACAGTG | + |
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Preference number: 6 (lower is better) Translates to: KMPGSSRLRPKA*ATTVRSPILTV Trigger: CACTGTCAGGATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS TCA 72 bp | CAGGAAGACATCCCCCAGCACCCACATCTCAGGGTCTaGTGGGTCATCCATGCCCTCCTCAAAGTTGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: QEDIPQHPHLRV*WVIHALLKVAP Trigger: AGGAGCAACTTTGAGGAGGGCATGGATGACCCATCAGACCCTGAGATGTGGGTGCTGGGGGATGTCTTCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS CCA 72 bp | CCGGTCAGCAAGGAGGTCCCTGTGTCCATAATACCTTaGCAGCCACCATCACAGGCAATGACCTCCCCATTC | + |
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Preference number: 6 (lower is better) Translates to: PVSKEVPVSIIP*QPPSQAMTSPF Trigger: GAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS CCA 72 bp | TCGCCGTCACCAGAAGCCTTGGCACCAATTAGATTCTaGATGTTAACGATGGAGCTTCGGGGGCCGGTCAGC | + |
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Preference number: 6 (lower is better) Translates to: SPSPEALAPIRF*MLTMELRGPVS Trigger: GCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS TCA 72 bp | CCAGACCAATCCTGTTATTTGCCCGATCAAACACGGTaGAATACAGCCTCAGGAAGACATCCCCCAGCACCC | + |
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Preference number: 6 (lower is better) Translates to: PDQSCYLPDQTR*NTASGRHPPAP Trigger: GGGTGCTGGGGGATGTCTTCCTGAGGCTGTATTTCACCGTGTTTGATCGGGCAAATAACAGGATTGGTCTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS CAA 72 bp | TCAGGGTCTGATGGGTCATCCATGCCCTCCTCAAAGTaGCTCCTGCAATTGTGTGACCGATCCTTTCGGATG | + |
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Preference number: 6 (lower is better) Translates to: SGSDGSSMPSSK*LLQLCDRSFRM Trigger: CATCCGAAAGGATCGGTCACACAATTGCAGGAGCAACTTTGAGGAGGGCATGGATGACCCATCAGACCCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS CAA 90 bp | GTGGGCACGGCTTCGAGGGTACTTCTCCAGGTAATCCTTCAGCACTaGGCTTTCCCGCAGGTTTTCACGCATGGACTTAATCTTCATCAG | + |
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Preference number: 6 (lower is better) Translates to: VGTASRVLLQVILQH*AFPQVFTHGLNLHQ Trigger: CTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS TCA 72 bp | CTTAATCTTCATCAGAGGGATTTTGACCAAGCACTCTaGGAGGGCCACAAGCCCAAGGACCCAGAGCCACTT | + |
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Preference number: 6 (lower is better) Translates to: LNLHQRDFDQAL*EGHKPKDPEPL Trigger: AAGTGGCTCTGGGTCCTTGGGCTTGTGGCCCTCTCAGAGTGCTTGGTCAAAATCCCTCTGATGAAGATTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS TCA 72 bp | TGGGCTGGAGCAATAGATGGATGGTACCCACAGGACTaGAGATCCAGTATCCAAGACAACCCTGAACTCCTG | + |
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Preference number: 6 (lower is better) Translates to: WAGAIDGWYPQD*RSSIQDNPELL Trigger: CAGGAGTTCAGGGTTGTCTTGGATACTGGATCTTCAGTCCTGTGGGTACCATCCATCTATTGCTCCAGCCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS GCA 72 bp | AGTAGGAGGGATCCACTCCACCTAGCATCAGCATGCTaGCCTTTTCATCCTTGCTGCTCAAGTAGAAGGCAA | + |
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Preference number: 6 (lower is better) Translates to: SRRDPLHLASAC*PFHPCCSSRRQ Trigger: TTGCCTTCTACTTGAGCAGCAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS CCA 72 bp | TCATGGAGATGCTATCCACAGCTAATTGCCAGTAGCTaGGCTTGGACACTGGTACCCAGTGAAGCTCTCCAT | + |
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Preference number: 6 (lower is better) Translates to: SWRCYPQLIASS*AWTLVPSEALH Trigger: ATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAGCATCTCCATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS CAA 72 bp | AAGACAATATCAGGCAGGGTGTTGATGGTGTCACACTaGAGGAAGTACTCGCCGTCACCAGAAGCCTTGGCA | + |
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Preference number: 6 (lower is better) Translates to: KTISGRVLMVSH*RKYSPSPEALA Trigger: TGCCAAGGCTTCTGGTGACGGCGAGTACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS CAA 72 bp | GCTTCGAGGGTACTTCTCCAGGTAATCCTTCAGCACTaGGCTTTCCCGCAGGTTTTCACGCATGGACTTAAT | + |
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Preference number: 6 (lower is better) Translates to: ASRVLLQVILQH*AFPQVFTHGLN Trigger: ATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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| CDS CAA 72 bp | TTTTCACGCATGGACTTAATCTTCATCAGAGGGATTTaGACCAAGCACTCTGAGAGGGCCACAAGCCCAAGG | + |
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Preference number: 6 (lower is better) Translates to: FSRMDLIFIRGI*TKHSERATSPR Trigger: CCTTGGGCTTGTGGCCCTCTCAGAGTGCTTGGTCAAAATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025647.7 |
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