Pregenerated sensors for PFN5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000109858

Ensembl transcript IDs: ENSMUST00000210331.2

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CTACTTCGACTTTGGCCTTTGGTACGGAGGTCCATGCTGTTGCCTTaGGTGAGCAAGTTGTCTCGGATCAACAGGCATTTGATTCCAGCA	+
Preference number: 5 (lower is better) Translates to: LLRLWPLVRRSMLLP*VSKLSRINRHLIPA Trigger: TGCTGGAATCAAATGCCTGTTGATCCGAGACAACTTGCTCACCCAAGGCAACAGCATGGACCTCCGTACCAAAGGCCAAAGTCGAAGTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210331.2
CDS TCA 90 bp	TCTGTCCCCTTCTTTCCCATCACCACAAGAAACACAGACTCTATCTaGACTATAGTCACTGCCTGGCTACTTCGACTTTGGCCTTTGGTA	+
Preference number: 5 (lower is better) Translates to: SVPFFPITTRNTDSI*TIVTAWLLRLWPLV Trigger: TACCAAAGGCCAAAGTCGAAGTAGCCAGGCAGTGACTATAGTTCAGATAGAGTCTGTGTTTCTTGTGGTGATGGGAAAGAAGGGGACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210331.2
CDS CAA 72 bp	CTTCGACTTTGGCCTTTGGTACGGAGGTCCATGCTGTaGCCTTGGGTGAGCAAGTTGTCTCGGATCAACAGG	+
Preference number: 6 (lower is better) Translates to: LRLWPLVRRSML*PWVSKLSRINR Trigger: CCTGTTGATCCGAGACAACTTGCTCACCCAAGGCAACAGCATGGACCTCCGTACCAAAGGCCAAAGTCGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210331.2
CDS CAA 90 bp	TGGCCTTTGGTACGGAGGTCCATGCTGTTGCCTTGGGTGAGCAAGTaGTCTCGGATCAACAGGCATTTGATTCCAGCAAGGGTGATTCCC	+
Preference number: 6 (lower is better) Translates to: WPLVRRSMLLPWVSK*SRINRHLIPARVIP Trigger: GGGAATCACCCTTGCTGGAATCAAATGCCTGTTGATCCGAGACAACTTGCTCACCCAAGGCAACAGCATGGACCTCCGTACCAAAGGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210331.2
CDS CCA 72 bp	CTTTGGCCTTTGGTACGGAGGTCCATGCTGTTGCCTTaGGTGAGCAAGTTGTCTCGGATCAACAGGCATTTG	+
Preference number: 6 (lower is better) Translates to: LWPLVRRSMLLP*VSKLSRINRHL Trigger: CAAATGCCTGTTGATCCGAGACAACTTGCTCACCCAAGGCAACAGCATGGACCTCCGTACCAAAGGCCAAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210331.2
CDS CAA 72 bp	GTACGGAGGTCCATGCTGTTGCCTTGGGTGAGCAAGTaGTCTCGGATCAACAGGCATTTGATTCCAGCAAGG	+
Preference number: 6 (lower is better) Translates to: VRRSMLLPWVSK*SRINRHLIPAR Trigger: CCTTGCTGGAATCAAATGCCTGTTGATCCGAGACAACTTGCTCACCCAAGGCAACAGCATGGACCTCCGTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210331.2
CDS CAA 90 bp	GCTACTTCGACTTTGGCCTTTGGTACGGAGGTCCATGCTGTTGCCTaGGGTGAGCAAGTTGTCTCGGATCAACAGGCATTTGATTCCAGC	+
Preference number: 6 (lower is better) Translates to: ATSTLAFGTEVHAVA*GEQVVSDQQAFDSS Trigger: GCTGGAATCAAATGCCTGTTGATCCGAGACAACTTGCTCACCCAAGGCAACAGCATGGACCTCCGTACCAAAGGCCAAAGTCGAAGTAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210331.2
CDS CAA 90 bp	GCCTGGCTACTTCGACTTTGGCCTTTGGTACGGAGGTCCATGCTGTaGCCTTGGGTGAGCAAGTTGTCTCGGATCAACAGGCATTTGATT	+
Preference number: 6 (lower is better) Translates to: AWLLRLWPLVRRSML*PWVSKLSRINRHLI Trigger: AATCAAATGCCTGTTGATCCGAGACAACTTGCTCACCCAAGGCAACAGCATGGACCTCCGTACCAAAGGCCAAAGTCGAAGTAGCCAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210331.2
CDS CAA 72 bp	CCTTGGGTGAGCAAGTTGTCTCGGATCAACAGGCATTaGATTCCAGCAAGGGTGATTCCCTGGAGAAACAGC	+
Preference number: 6 (lower is better) Translates to: PWVSKLSRINRH*IPARVIPWRNS Trigger: GCTGTTTCTCCAGGGAATCACCCTTGCTGGAATCAAATGCCTGTTGATCCGAGACAACTTGCTCACCCAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210331.2
CDS CCA 72 bp	ATCAACAGGCATTTGATTCCAGCAAGGGTGATTCCCTaGAGAAACAGCTTTTCTCTACCCTCTCTTGCCAGT	+
Preference number: 6 (lower is better) Translates to: INRHLIPARVIP*RNSFSLPSLAS Trigger: ACTGGCAAGAGAGGGTAGAGAAAAGCTGTTTCTCCAGGGAATCACCCTTGCTGGAATCAAATGCCTGTTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210331.2
CDS TCA 72 bp	TTCTTTCCCATCACCACAAGAAACACAGACTCTATCTaGACTATAGTCACTGCCTGGCTACTTCGACTTTGG	+
Preference number: 6 (lower is better) Translates to: FFPITTRNTDSI*TIVTAWLLRLW Trigger: CCAAAGTCGAAGTAGCCAGGCAGTGACTATAGTTCAGATAGAGTCTGTGTTTCTTGTGGTGATGGGAAAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210331.2
CDS CAA 72 bp	CCTTCAGTAAAAGAAGCTAATAACCAGGGTGGACAGTaGGTGATAATTGCTGCATCACTGCACAACTCAGAT	+
Preference number: 6 (lower is better) Translates to: PSVKEANNQGGQ*VIIAASLHNSD Trigger: ATCTGAGTTGTGCAGTGATGCAGCAATTATCACCAACTGTCCACCCTGGTTATTAGCTTCTTTTACTGAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210331.2
CDS CAA 90 bp	GTAAAGTTTCCTTCAGTAAAAGAAGCTAATAACCAGGGTGGACAGTaGGTGATAATTGCTGCATCACTGCACAACTCAGATTGTAGGCAC	+
Preference number: 6 (lower is better) Translates to: VKFPSVKEANNQGGQ*VIIAASLHNSDCRH Trigger: GTGCCTACAATCTGAGTTGTGCAGTGATGCAGCAATTATCACCAACTGTCCACCCTGGTTATTAGCTTCTTTTACTGAAGGAAACTTTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210331.2

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