Pregenerated sensors for PFN4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020639Ensembl transcript IDs: ENSMUST00000020967.11, ENSMUST00000178879.3, ENSMUST00000219438.2, ENSMUST00000219503.2
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCTATGGAAGGAAGCAGCCGCACTGCAAAGGGCTAGATCAAAGCTaGCTTACTGAGGCAGAGACAAGACGGAGTCCCAGTAGTGCTCTC | + |
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Preference number: 1 (lower is better) Translates to: CYGRKQPHCKGLDQS*LTEAETRRSPSSAL Trigger: GAGAGCACTACTGGGACTCCGTCTTGTCTCTGCCTCAGTAAGTCAGCTTTGATCTAGCCCTTTGCAGTGCGGCTGCTTCCTTCCATAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR GCA 90 bp | ACCTGCATTTCCCATGGCCCCAGTGGTCAGTACTTTCTGTGGTTATaGACCACCTTTGGATCCCCCAGGAAGTTCTTCCCTTCTCCTCAG | + |
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Preference number: 1 (lower is better) Translates to: TCISHGPSGQYFLWL*TTFGSPRKFFPSPQ Trigger: CTGAGGAGAAGGGAAGAACTTCCTGGGGGATCCAAAGGTGGTGCATAACCACAGAAAGTACTGACCACTGGGGCCATGGGAAATGCAGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR GCA 90 bp | AATTTACACAAATTTAACCCAGGGAAGGGACCCCGACAAGACTGCTaGTTCTCTGCTGGCAGGGTCCTCTTCCTACAGAGCGGGTGCCTA | + |
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Preference number: 1 (lower is better) Translates to: NLHKFNPGKGPRQDC*FSAGRVLFLQSGCL Trigger: TAGGCACCCGCTCTGTAGGAAGAGGACCCTGCCAGCAGAGAAGCAGCAGTCTTGTCGGGGTCCCTTCCCTGGGTTAAATTTGTGTAAATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR TCA 90 bp | ATGACACAGTCAGGCTCCTCAGAGGAAATCAGGGAGACTTCATCATaGTACCACGATGCTATGGAAGGAAGCAGCCGCACTGCAAAGGGC | + |
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Preference number: 1 (lower is better) Translates to: MTQSGSSEEIRETSS*YHDAMEGSSRTAKG Trigger: GCCCTTTGCAGTGCGGCTGCTTCCTTCCATAGCATCGTGGTATCATGATGAAGTCTCCCTGATTTCCTCTGAGGAGCCTGACTGTGTCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR GCA 90 bp | TTTAATTTACACAAATTTAACCCAGGGAAGGGACCCCGACAAGACTaGTGCTTCTCTGCTGGCAGGGTCCTCTTCCTACAGAGCGGGTGC | + |
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Preference number: 1 (lower is better) Translates to: FNLHKFNPGKGPRQD*CFSAGRVLFLQSGC Trigger: GCACCCGCTCTGTAGGAAGAGGACCCTGCCAGCAGAGAAGCAGCAGTCTTGTCGGGGTCCCTTCCCTGGGTTAAATTTGTGTAAATTAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR TCA 90 bp | ACCAGTCTGGCCTTGAACTTACTGAGATTTGCCCACCTCTCTTTCTaGGTGCTGGGTATATGGGTGTATGCCAGTGCACCCAGAGAATGC | + |
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Preference number: 1 (lower is better) Translates to: TSLALNLLRFAHLSF*VLGIWVYASAPREC Trigger: GCATTCTCTGGGTGCACTGGCATACACCCATATACCCAGCACTCAGAAAGAGAGGTGGGCAAATCTCAGTAAGTTCAAGGCCAGACTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR GCA 90 bp | AGGCTCCTCAGAGGAAATCAGGGAGACTTCATCATGATACCACGATaGTATGGAAGGAAGCAGCCGCACTGCAAAGGGCTAGATCAAAGC | + |
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Preference number: 1 (lower is better) Translates to: RLLRGNQGDFIMIPR*YGRKQPHCKGLDQS Trigger: GCTTTGATCTAGCCCTTTGCAGTGCGGCTGCTTCCTTCCATAGCATCGTGGTATCATGATGAAGTCTCCCTGATTTCCTCTGAGGAGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR CCA 90 bp | CCTCAGAGGAAATCAGGGAGACTTCATCATGATACCACGATGCTATaGAAGGAAGCAGCCGCACTGCAAAGGGCTAGATCAAAGCTGACT | + |
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Preference number: 1 (lower is better) Translates to: PQRKSGRLHHDTTML*KEAAALQRARSKLT Trigger: AGTCAGCTTTGATCTAGCCCTTTGCAGTGCGGCTGCTTCCTTCCATAGCATCGTGGTATCATGATGAAGTCTCCCTGATTTCCTCTGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR TCA 90 bp | TACCATTGCAGTACAGTTTGCTCATTCCCAATGCACAGGGTTAGGTaGCTACGACGTGCTGGTGCCATGCTCTGTAGTGTAGTGGCATTA | + |
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Preference number: 1 (lower is better) Translates to: YHCSTVCSFPMHRVR*LRRAGAMLCSVVAL Trigger: TAATGCCACTACACTACAGAGCATGGCACCAGCACGTCGTAGTCACCTAACCCTGTGCATTGGGAATGAGCAAACTGTACTGCAATGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR GCA 90 bp | GAGATTTGCCCACCTCTCTTTCTGAGTGCTGGGTATATGGGTGTATaGCAGTGCACCCAGAGAATGCAAATGAAATTAACCACCATAAGT | + |
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Preference number: 1 (lower is better) Translates to: EICPPLFLSAGYMGV*QCTQRMQMKLTTIS Trigger: ACTTATGGTGGTTAATTTCATTTGCATTCTCTGGGTGCACTGGCATACACCCATATACCCAGCACTCAGAAAGAGAGGTGGGCAAATCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR CCA 90 bp | AGCGAACGCAGTACTTCTAACATACCCAGTACTTTCCCACAACAGTaGGCTCTAACTGGCAGTGTGAGTTGTATTATTCTTTGGAGTCTT | + |
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Preference number: 1 (lower is better) Translates to: SERSTSNIPSTFPQQ*ALTGSVSCIILWSL Trigger: AAGACTCCAAAGAATAATACAACTCACACTGCCAGTTAGAGCCCACTGTTGTGGGAAAGTACTGGGTATGTTAGAAGTACTGCGTTCGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR TCA 90 bp | CAAAAATTCTTTCTGTGTCCAAACCAGAGCCAAATTTCTTACATGTaGATTTGGCTAAGATCTCAGCAGCTTTCCCGTCAGGATCTAGGA | + |
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Preference number: 1 (lower is better) Translates to: QKFFLCPNQSQISYM*IWLRSQQLSRQDLG Trigger: TCCTAGATCCTGACGGGAAAGCTGCTGAGATCTTAGCCAAATTCACATGTAAGAAATTTGGCTCTGGTTTGGACACAGAAAGAATTTTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR TCA 90 bp | CAGCTCTATTTTAGATTACTTGGAGATTTCATCAGCCCTAGAGAATaGTTGGTTCTCCATGCCGAGAATGAAAGTGCACATAACTATCAC | + |
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Preference number: 1 (lower is better) Translates to: QLYFRLLGDFISPRE*LVLHAENESAHNYH Trigger: GTGATAGTTATGTGCACTTTCATTCTCGGCATGGAGAACCAATCATTCTCTAGGGCTGATGAAATCTCCAAGTAATCTAAAATAGAGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR TCA 90 bp | AGTTTGATGACCTGCCTTCCTTCTTTCATTTTATGGATGCTTCAATaGTTAGCTCAAATTATACGTCTCTGTTCTGGTTTCTGCTCCTAC | + |
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Preference number: 1 (lower is better) Translates to: SLMTCLPSFILWMLQ*LAQIIRLCSGFCSY Trigger: GTAGGAGCAGAAACCAGAACAGAGACGTATAATTTGAGCTAATCATTGAAGCATCCATAAAATGAAAGAAGGAAGGCAGGTCATCAAACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR TCA 90 bp | AAAACTGAGGTCCTAGAATTAGCGGTTAATATTTACCAATACATTTaGGCCACCAAAGTTGTTTACGAAATAAGCCTGGCTCACTTGTAT | + |
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Preference number: 1 (lower is better) Translates to: KTEVLELAVNIYQYI*ATKVVYEISLAHLY Trigger: ATACAAGTGAGCCAGGCTTATTTCGTAAACAACTTTGGTGGCTCAAATGTATTGGTAAATATTAACCGCTAATTCTAGGACCTCAGTTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR-3UTR TCA 90 bp | GAAAGTGCACATAACTATCACGGGGAACTGGATGGGGAAGGGCTGAAGGAACAGGGGAGGGGGAAGGGATaGGGGAAGCACAGTTTAGTG | + |
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Preference number: 2 (lower is better) Translates to: ESAHNYHGELDGEGLKEQGRGKG*GKHSLV Trigger: CACTAAACTGTGCTTCCCTCATCCCTTCCCCCTCCC...CTGTTCCTTCAGCCCTTCCCCATCCAGTTCCCCGTGATAGTTATGTGCACTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR-3UTR GCA 90 bp | GAAAGTGCACATAACTATCACGGGGAACTGGATGGGGAAGGGCTGAAGGAACAGCCAAGCCTTATGGCCTaGGTTCCACTCCCATCACCC | + |
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Preference number: 2 (lower is better) Translates to: ESAHNYHGELDGEGLKEQPSLMA*VPLPSP Trigger: GGGTGATGGGAGTGGAACGCAGGCCATAAGGCTTGG...CTGTTCCTTCAGCCCTTCCCCATCCAGTTCCCCGTGATAGTTATGTGCACTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR-3UTR TCA 90 bp | TGGGGACTTGGAGATAAGACTCCCAGGAGACTTGCCCTGGGAAAAACCATAAATTGGATGGGGAAGGGCTaGAGGAACAGTAGAACCTGT | + |
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Preference number: 2 (lower is better) Translates to: WGLGDKTPRRLALGKTINWMGKG*RNSRTC Trigger: ACAGGTTCTACTGTTCCTTCAGCCCTTCCCCATCCA...ATTTATGGTTTTTCCCAGGGCAAGTCTCCTGGGAGTCTTATCTCCAAGTCCCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR-3UTR CCA 90 bp | GATGACTCATGGGTTTACTTGCCACCAAGCCTTATGGCCTGCGTTCCACTCCCAATCTGGCAAGATGTGTaGGGACTTGGAGATAAGACT | + |
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Preference number: 2 (lower is better) Translates to: DDSWVYLPPSLMACVPLPIWQDV*GLGDKT Trigger: AGTCTTATCTCCAAGTCCCCACACATCTTGCCAGAT...TGGGAGTGGAACGCAGGCCATAAGGCTTGGTGGCAAGTAAACCCATGAGTCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| 3UTR-3UTR TCA 90 bp | GAGATGACTCATGGGTTTACTTGCCACCAAGCCTTATGGCCTGCGTTCCACTCCCAGGTGTCATGTCTGTaGCCAAAGCTTAAAGAAAAG | + |
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Preference number: 2 (lower is better) Translates to: EMTHGFTCHQALWPAFHSQVSCL*PKLKEK Trigger: CTTTTCTTTAAGCTTTGGTCACAGACATGACACCTG...GGAGTGGAACGCAGGCCATAAGGCTTGGTGGCAAGTAAACCCATGAGTCATCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| 3UTR-3UTR CCA 90 bp | ACTCATGGGTTTACTTGCCACCAAGCCTTATGGCCTGCGTTCCACTCCCATCACTATTCTTGGCATATCTaGCAAGATGTGTGGGGACTT | + |
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Preference number: 2 (lower is better) Translates to: THGFTCHQALWPAFHSHHYSWHI*QDVWGL Trigger: AAGTCCCCACACATCTTGCCAGATATGCCAAGAATA...GTGATGGGAGTGGAACGCAGGCCATAAGGCTTGGTGGCAAGTAAACCCATGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| 3UTR-3UTR GCA 90 bp | TGGGGACTTGGAGATAAGACTCCCAGGAGACTTGCCCTGGGAAAAACCATAAATGACTCCCAGGAGACTTaGCCTGGGAAAAACCATAAA | + |
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Preference number: 2 (lower is better) Translates to: WGLGDKTPRRLALGKTINDSQET*PGKNHK Trigger: TTTATGGTTTTTCCCAGGGCAAGTCTCCTGGGAGTC...ATTTATGGTTTTTCCCAGGGCAAGTCTCCTGGGAGTCTTATCTCCAAGTCCCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| 3UTR-3UTR GCA 90 bp | ATTCTTGGCATATCTGGCAAGATGTGTGGGGACTTGGAGATAAGACTCCCAGGATACTTTCTGTGGTTATaGACCACCTTTGGATCCCCC | + |
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Preference number: 2 (lower is better) Translates to: ILGISGKMCGDLEIRLPGYFLWL*TTFGSP Trigger: GGGGGATCCAAAGGTGGTGCATAACCACAGAAAGTA...TCCTGGGAGTCTTATCTCCAAGTCCCCACACATCTTGCCAGATATGCCAAGAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR-3UTR GCA 90 bp | AGCTCTCCAGATATTTTCTGGATTCTGTTAGGTAGAAGTCATCTACTTCTCTGTTCCTCTCTGCTCCCCTaGCCATCTCTCCCGCATAGC | + |
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Preference number: 2 (lower is better) Translates to: SSPDIFWILLGRSHLLLCSSLLP*PSLPHS Trigger: GCTATGCGGGAGAGATGGGCAGGGGAGCAGAGAGGA...ACAGAGAAGTAGATGACTTCTACCTAACAGAATCCAGAAAATATCTGGAGAGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR-3UTR TCA 90 bp | GAAAGTGCACATAACTATCACGGGGAACTGGATGGGGAAGGGCTGAAGGAACAGTACTGGCCTAGAAATTaGATCATAGGAACTTTAAGG | + |
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Preference number: 2 (lower is better) Translates to: ESAHNYHGELDGEGLKEQYWPRN*IIGTLR Trigger: CCTTAAAGTTCCTATGATTCAATTTCTAGGCCAGTA...CTGTTCCTTCAGCCCTTCCCCATCCAGTTCCCCGTGATAGTTATGTGCACTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR-3UTR TCA 90 bp | AGCTCTCCAGATATTTTCTGGATTCTGTTAGGTAGAAGTCATCTACTTCTCTGTTCAAAGCTGACTTACTaGGGCAGAGACAAGACGGAG | + |
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Preference number: 2 (lower is better) Translates to: SSPDIFWILLGRSHLLLCSKLTY*GRDKTE Trigger: CTCCGTCTTGTCTCTGCCTCAGTAAGTCAGCTTTGA...ACAGAGAAGTAGATGACTTCTACCTAACAGAATCCAGAAAATATCTGGAGAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR CAA 90 bp | ACCCAGTACTTTCCCACAACAGTGGGCTCTAACTGGCAGTGTGAGTaGTATTATTCTTTGGAGTCTTTTGTAGCCAAGGATTTAAAAGGA | + |
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Preference number: 2 (lower is better) Translates to: TQYFPTTVGSNWQCE*YYSLESFVAKDLKG Trigger: TCCTTTTAAATCCTTGGCTACAAAAGACTCCAAAGAATAATACAACTCACACTGCCAGTTAGAGCCCACTGTTGTGGGAAAGTACTGGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR-3UTR CCA 90 bp | TGGGGACTTGGAGATAAGACTCCCAGGAGACTTGCCCTGGGAAAAACCATAAATTCTCCAGATATTTTCTaGATTCTGTTAGGTAGAAGT | + |
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Preference number: 2 (lower is better) Translates to: WGLGDKTPRRLALGKTINSPDIF*ILLGRS Trigger: ACTTCTACCTAACAGAATCCAGAAAATATCTGGAGA...ATTTATGGTTTTTCCCAGGGCAAGTCTCCTGGGAGTCTTATCTCCAAGTCCCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR CAA 90 bp | ATTCTTTCTGTGTCCAAACCAGAGCCAAATTTCTTACATGTGAATTaGGCTAAGATCTCAGCAGCTTTCCCGTCAGGATCTAGGACATTT | + |
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Preference number: 2 (lower is better) Translates to: ILSVSKPEPNFLHVN*AKISAAFPSGSRTF Trigger: AAATGTCCTAGATCCTGACGGGAAAGCTGCTGAGATCTTAGCCAAATTCACATGTAAGAAATTTGGCTCTGGTTTGGACACAGAAAGAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR-3UTR TCA 90 bp | AATGATTTAGGAGTTGTGAACTACCATTGCAGTACAGTTTGCTCATTCCCAATGATAACAATGGCAGTGTaGATAAAATTCCAGCGCAGT | + |
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Preference number: 2 (lower is better) Translates to: NDLGVVNYHCSTVCSFPMITMAV*IKFQRS Trigger: ACTGCGCTGGAATTTTATTCACACTGCCATTGTTAT...CATTGGGAATGAGCAAACTGTACTGCAATGGTAGTTCACAACTCCTAAATCATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR GCA 72 bp | CCCAGGGAAGGGACCCCGACAAGACTGCTGCTTCTCTaGTGGCAGGGTCCTCTTCCTACAGAGCGGGTGCCT | + |
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Preference number: 3 (lower is better) Translates to: PREGTPTRLLLL*WQGPLPTERVP Trigger: AGGCACCCGCTCTGTAGGAAGAGGACCCTGCCAGCAGAGAAGCAGCAGTCTTGTCGGGGTCCCTTCCCTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR CCA 72 bp | AGGGAAGGGACCCCGACAAGACTGCTGCTTCTCTGCTaGCAGGGTCCTCTTCCTACAGAGCGGGTGCCTAGC | + |
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Preference number: 3 (lower is better) Translates to: REGTPTRLLLLC*QGPLPTERVPS Trigger: GCTAGGCACCCGCTCTGTAGGAAGAGGACCCTGCCAGCAGAGAAGCAGCAGTCTTGTCGGGGTCCCTTCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR GCA 72 bp | TTCTCTGCTGGCAGGGTCCTCTTCCTACAGAGCGGGTaGCTAGCACTTCTAACCTGCTTCCTCTCTGCTCCC | + |
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Preference number: 3 (lower is better) Translates to: FSAGRVLFLQSG*LALLTCFLSAP Trigger: GGGAGCAGAGAGGAAGCAGGTTAGAAGTGCTAGGCACCCGCTCTGTAGGAAGAGGACCCTGCCAGCAGAGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR TCA 72 bp | TGGCCTGCGTTCCACTCCCATCACCCAGAGGAGAGGTaGCTCCTATGGCTGCCCTCTGACTTCGATGTGAAT | + |
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Preference number: 3 (lower is better) Translates to: WPAFHSHHPEER*LLWLPSDFDVN Trigger: ATTCACATCGAAGTCAGAGGGCAGCCATAGGAGTCACCTCTCCTCTGGGTGATGGGAGTGGAACGCAGGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| 3UTR GCA 72 bp | GACTCATGGGTTTACTTGCCACCAAGCCTTATGGCCTaGGTTCCACTCCCATCACCCAGAGGAGAGGTGACT | + |
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Preference number: 3 (lower is better) Translates to: DSWVYLPPSLMA*VPLPSPRGEVT Trigger: AGTCACCTCTCCTCTGGGTGATGGGAGTGGAACGCAGGCCATAAGGCTTGGTGGCAAGTAAACCCATGAGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| 3UTR GCA 72 bp | AAATTTAACCCAGGGAAGGGACCCCGACAAGACTGCTaGTTCTCTGCTGGCAGGGTCCTCTTCCTACAGAGC | + |
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Preference number: 3 (lower is better) Translates to: KFNPGKGPRQDC*FSAGRVLFLQS Trigger: GCTCTGTAGGAAGAGGACCCTGCCAGCAGAGAAGCAGCAGTCTTGTCGGGGTCCCTTCCCTGGGTTAAATTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR GCA 72 bp | CACAAATTTAACCCAGGGAAGGGACCCCGACAAGACTaGTGCTTCTCTGCTGGCAGGGTCCTCTTCCTACAG | + |
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Preference number: 3 (lower is better) Translates to: HKFNPGKGPRQD*CFSAGRVLFLQ Trigger: CTGTAGGAAGAGGACCCTGCCAGCAGAGAAGCAGCAGTCTTGTCGGGGTCCCTTCCCTGGGTTAAATTTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR CCA 72 bp | GAGATGACTCATGGGTTTACTTGCCACCAAGCCTTATaGCCTGCGTTCCACTCCCATCACCCAGAGGAGAGG | + |
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Preference number: 3 (lower is better) Translates to: EMTHGFTCHQAL*PAFHSHHPEER Trigger: CCTCTCCTCTGGGTGATGGGAGTGGAACGCAGGCCATAAGGCTTGGTGGCAAGTAAACCCATGAGTCATCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| 3UTR TCA 72 bp | GCCCTAGCTACAGAGTGGTTCCCGGAAGCAGTGAGATaGCTCATGGGTTTACTTGCCACCAAGCCTTATGGC | + |
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Preference number: 3 (lower is better) Translates to: ALATEWFPEAVR*LMGLLATKPYG Trigger: GCCATAAGGCTTGGTGGCAAGTAAACCCATGAGTCATCTCACTGCTTCCGGGAACCACTCTGTAGCTAGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| 3UTR TCA 72 bp | AGGAAGCAGCCGCACTGCAAAGGGCTAGATCAAAGCTaGCTTACTGAGGCAGAGACAAGACGGAGTCCCAGT | + |
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Preference number: 3 (lower is better) Translates to: RKQPHCKGLDQS*LTEAETRRSPS Trigger: ACTGGGACTCCGTCTTGTCTCTGCCTCAGTAAGTCAGCTTTGATCTAGCCCTTTGCAGTGCGGCTGCTTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR CCA 72 bp | TCTCATACGCGGCACCTGCATTTCCCATGGCCCCAGTaGTCAGTACTTTCTGTGGTTATGCACCACCTTTGG | + |
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Preference number: 3 (lower is better) Translates to: SHTRHLHFPWPQ*SVLSVVMHHLW Trigger: CCAAAGGTGGTGCATAACCACAGAAAGTACTGACCACTGGGGCCATGGGAAATGCAGGTGCCGCGTATGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR CCA 72 bp | TGCATTTCCCATGGCCCCAGTGGTCAGTACTTTCTGTaGTTATGCACCACCTTTGGATCCCCCAGGAAGTTC | + |
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Preference number: 3 (lower is better) Translates to: CISHGPSGQYFL*LCTTFGSPRKF Trigger: GAACTTCCTGGGGGATCCAAAGGTGGTGCATAACCACAGAAAGTACTGACCACTGGGGCCATGGGAAATGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR TCA 72 bp | TCAGGCTCCTCAGAGGAAATCAGGGAGACTTCATCATaGTACCACGATGCTATGGAAGGAAGCAGCCGCACT | + |
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Preference number: 3 (lower is better) Translates to: SGSSEEIRETSS*YHDAMEGSSRT Trigger: AGTGCGGCTGCTTCCTTCCATAGCATCGTGGTATCATGATGAAGTCTCCCTGATTTCCTCTGAGGAGCCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR TCA 72 bp | GCCTTGAACTTACTGAGATTTGCCCACCTCTCTTTCTaGGTGCTGGGTATATGGGTGTATGCCAGTGCACCC | + |
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Preference number: 3 (lower is better) Translates to: ALNLLRFAHLSF*VLGIWVYASAP Trigger: GGGTGCACTGGCATACACCCATATACCCAGCACTCAGAAAGAGAGGTGGGCAAATCTCAGTAAGTTCAAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR TCA 72 bp | AGTACAGTTTGCTCATTCCCAATGCACAGGGTTAGGTaGCTACGACGTGCTGGTGCCATGCTCTGTAGTGTA | + |
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Preference number: 3 (lower is better) Translates to: STVCSFPMHRVR*LRRAGAMLCSV Trigger: TACACTACAGAGCATGGCACCAGCACGTCGTAGTCACCTAACCCTGTGCATTGGGAATGAGCAAACTGTACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR GCA 72 bp | AGAGGAAATCAGGGAGACTTCATCATGATACCACGATaGTATGGAAGGAAGCAGCCGCACTGCAAAGGGCTA | + |
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Preference number: 3 (lower is better) Translates to: RGNQGDFIMIPR*YGRKQPHCKGL Trigger: TAGCCCTTTGCAGTGCGGCTGCTTCCTTCCATAGCATCGTGGTATCATGATGAAGTCTCCCTGATTTCCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR CCA 72 bp | AAATCAGGGAGACTTCATCATGATACCACGATGCTATaGAAGGAAGCAGCCGCACTGCAAAGGGCTAGATCA | + |
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Preference number: 3 (lower is better) Translates to: KSGRLHHDTTML*KEAAALQRARS Trigger: TGATCTAGCCCTTTGCAGTGCGGCTGCTTCCTTCCATAGCATCGTGGTATCATGATGAAGTCTCCCTGATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR-3UTR CAA 90 bp | GAAAGTGCACATAACTATCACGGGGAACTGGATGGGGAAGGGCTGAAGGAACAGGAGTTGTATTATTCTTaGGAGTCTTTTGTAGCCAAG | + |
|
Preference number: 3 (lower is better) Translates to: ESAHNYHGELDGEGLKEQELYYS*ESFVAK Trigger: CTTGGCTACAAAAGACTCCAAAGAATAATACAACTC...CTGTTCCTTCAGCCCTTCCCCATCCAGTTCCCCGTGATAGTTATGTGCACTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR TCA 72 bp | CCTACCCAGCTTTGGTCTGAGATGGTGCAGGGCACATaGTTGGACACCATAGTTATTTGCTACAAGAATAAG | + |
|
Preference number: 3 (lower is better) Translates to: PTQLWSEMVQGT*LDTIVICYKNK Trigger: CTTATTCTTGTAGCAAATAACTATGGTGTCCAATCATGTGCCCTGCACCATCTCAGACCAAAGCTGGGTAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR GCA 72 bp | CTCTTTCTGAGTGCTGGGTATATGGGTGTATGCCAGTaGACCCAGAGAATGCAAATGAAATTAACCACCATA | + |
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Preference number: 3 (lower is better) Translates to: LFLSAGYMGVCQ*TQRMQMKLTTI Trigger: TATGGTGGTTAATTTCATTTGCATTCTCTGGGTGCACTGGCATACACCCATATACCCAGCACTCAGAAAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR TCA 72 bp | TTTCTGTGTCCAAACCAGAGCCAAATTTCTTACATGTaGATTTGGCTAAGATCTCAGCAGCTTTCCCGTCAG | + |
|
Preference number: 3 (lower is better) Translates to: FLCPNQSQISYM*IWLRSQQLSRQ Trigger: CTGACGGGAAAGCTGCTGAGATCTTAGCCAAATTCACATGTAAGAAATTTGGCTCTGGTTTGGACACAGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR CCA 72 bp | CATACCCAGTACTTTCCCACAACAGTGGGCTCTAACTaGCAGTGTGAGTTGTATTATTCTTTGGAGTCTTTT | + |
|
Preference number: 3 (lower is better) Translates to: HTQYFPTTVGSN*QCELYYSLESF Trigger: AAAAGACTCCAAAGAATAATACAACTCACACTGCCAGTTAGAGCCCACTGTTGTGGGAAAGTACTGGGTATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR GCA 72 bp | CAGCATGTTAATGATTTAGGAGTTGTGAACTACCATTaGAGTACAGTTTGCTCATTCCCAATGCACAGGGTT | + |
|
Preference number: 3 (lower is better) Translates to: QHVNDLGVVNYH*STVCSFPMHRV Trigger: AACCCTGTGCATTGGGAATGAGCAAACTGTACTGCAATGGTAGTTCACAACTCCTAAATCATTAACATGCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR CCA 72 bp | AGTACTTCTAACATACCCAGTACTTTCCCACAACAGTaGGCTCTAACTGGCAGTGTGAGTTGTATTATTCTT | + |
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Preference number: 3 (lower is better) Translates to: STSNIPSTFPQQ*ALTGSVSCIIL Trigger: AAGAATAATACAACTCACACTGCCAGTTAGAGCCCACTGTTGTGGGAAAGTACTGGGTATGTTAGAAGTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR TCA 72 bp | GTCCTAGAATTAGCGGTTAATATTTACCAATACATTTaGGCCACCAAAGTTGTTTACGAAATAAGCCTGGCT | + |
|
Preference number: 3 (lower is better) Translates to: VLELAVNIYQYI*ATKVVYEISLA Trigger: AGCCAGGCTTATTTCGTAAACAACTTTGGTGGCTCAAATGTATTGGTAAATATTAACCGCTAATTCTAGGAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| CDS-3UTR CCA 90 bp | GATGACTCATGGGTTTACTTGCCACCAAGCCTTATGGCCTGCGTTCCACTCCCACCACAAGATACATGTTaGTCTTCACCACCACCACAC | + |
|
Preference number: 4 (lower is better) Translates to: DDSWVYLPPSLMACVPLPPQDTC*SSPPPH Trigger: GTGTGGTGGTGGTGAAGACCAACATGTATCTTGTGG...TGGGAGTGGAACGCAGGCCATAAGGCTTGGTGGCAAGTAAACCCATGAGTCATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| 3UTR CAA 72 bp | TATATTCTTGGCATATCTGGCAAGATGTGTGGGGACTaGGAGATAAGACTCCCAGGAGACTTGCCCTGGGAA | + |
|
Preference number: 4 (lower is better) Translates to: YILGISGKMCGD*EIRLPGDLPWE Trigger: TTCCCAGGGCAAGTCTCCTGGGAGTCTTATCTCCAAGTCCCCACACATCTTGCCAGATATGCCAAGAATATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| CDS-3UTR CCA 90 bp | TGGGGACTTGGAGATAAGACTCCCAGGAGACTTGCCCTGGGAAAAACCATAAATCCACAAGATACATGTTaGTCTTCACCACCACCACAC | + |
|
Preference number: 4 (lower is better) Translates to: WGLGDKTPRRLALGKTINPQDTC*SSPPPH Trigger: GTGTGGTGGTGGTGAAGACCAACATGTATCTTGTGG...ATTTATGGTTTTTCCCAGGGCAAGTCTCCTGGGAGTCTTATCTCCAAGTCCCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| CDS-3UTR GCA 90 bp | ATGTGTGGGGACTTGGAGATAAGACTCCCAGGAGACTTGCCCTGGGAAAAACCAGAGAGAATAGTCATCTaGCCGAACACATTTGTAATC | + |
|
Preference number: 4 (lower is better) Translates to: MCGDLEIRLPGDLPWEKPERIVI*PNTFVI Trigger: GATTACAAATGTGTTCGGGCAGATGACTATTCTCTC...TGGTTTTTCCCAGGGCAAGTCTCCTGGGAGTCTTATCTCCAAGTCCCCACACAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| 3UTR CAA 72 bp | TCCTCTTCCTCTTCCTCCTCTTCCTCTTCTTCTTTTTaGTTTTCCGAGACAGGGTTTCTCTGCATAGCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: SSSSSSSSSSSF*FSETGFLCIAL Trigger: CAGGGCTATGCAGAGAAACCCTGTCTCGGAAAACAAAAAAGAAGAAGAGGAAGAGGAGGAAGAGGAAGAGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| CDS-3UTR TCA 90 bp | AGCTCTCCAGATATTTTCTGGATTCTGTTAGGTAGAAGTCATCTACTTCTCTGTTGTAATCCTTCTCCTTaGAATACAACCCTTCCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: SSPDIFWILLGRSHLLLCCNPSP*NTTLPF Trigger: GAAGGGAAGGGTTGTATTTCAAGGAGAAGGATTACA...ACAGAGAAGTAGATGACTTCTACCTAACAGAATCCAGAAAATATCTGGAGAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| 3UTR CAA 72 bp | GTGGGCTCTAACTGGCAGTGTGAGTTGTATTATTCTTaGGAGTCTTTTGTAGCCAAGGATTTAAAAGGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: VGSNWQCELYYS*ESFVAKDLKGE Trigger: TTCTCCTTTTAAATCCTTGGCTACAAAAGACTCCAAAGAATAATACAACTCACACTGCCAGTTAGAGCCCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| CDS-3UTR TCA 90 bp | TTAGAGAGGATGCTCTTCCGAAATAAGAAAACTTTTTCCCTTAGCTCAGTCTTTTGTAATCCTTCTCCTTaGAATACAACCCTTCCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: LERMLFRNKKTFSLSSVFCNPSP*NTTLPF Trigger: GAAGGGAAGGGTTGTATTTCAAGGAGAAGGATTACA...AAAGACTGAGCTAAGGGAAAAAGTTTTCTTATTTCGGAAGAGCATCCTCTCTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| CDS-3UTR GCA 90 bp | GAGAGGATGCTCTTCCGAAATAAGAAAACTTTTTCCCTTAGCTCAGTCTTTGTTGAGAGAATAGTCATCTaGCCGAACACATTTGTAATC | + |
|
Preference number: 4 (lower is better) Translates to: ERMLFRNKKTFSLSSVFVERIVI*PNTFVI Trigger: GATTACAAATGTGTTCGGGCAGATGACTATTCTCTC...AACAAAGACTGAGCTAAGGGAAAAAGTTTTCTTATTTCGGAAGAGCATCCTCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| CDS CCA 90 bp | GGCATTACACTAAATCCTGGTGATGTCACACACAGGGTCTTTTCCTaGAGTTTGATGAGGGCTGCGCTGTCCACGTGTTTCGTCCCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: GITLNPGDVTHRVFS*SLMRAALSTCFVPS Trigger: GCTGGGGACGAAACACGTGGACAGCGCAGCCCTCATCAAACTCCAGGAAAAGACCCTGTGTGTGACATCACCAGGATTTAGTGTAATGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000020967.11 ENSMUST00000178879.3 ENSMUST00000219438.2 ENSMUST00000219503.2 |
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| CDS GCA 90 bp | TGTGGCTTCCACGCAGACGCTAGGATACATGCCTGCAGTGTAAGTTaGCACCACAAGATACATGTTGGTCTTCACCACCACCACACCAGT | + |
|
Preference number: 5 (lower is better) Translates to: CGFHADARIHACSVS*HHKIHVGLHHHHTS Trigger: ACTGGTGTGGTGGTGGTGAAGACCAACATGTATCTTGTGGTGGCAACTTACACTGCAGGCATGTATCCTAGCGTCTGCGTGGAAGCCACA 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020967.11 ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| CDS GCA 90 bp | TCCCAGCTTCTCTGTGGCTTCCACGCAGACGCTAGGATACATGCCTaGAGTGTAAGTTGCCACCACAAGATACATGTTGGTCTTCACCAC | + |
|
Preference number: 5 (lower is better) Translates to: SQLLCGFHADARIHA*SVSCHHKIHVGLHH Trigger: GTGGTGAAGACCAACATGTATCTTGTGGTGGCAACTTACACTGCAGGCATGTATCCTAGCGTCTGCGTGGAAGCCACAGAGAAGCTGGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020967.11 ENSMUST00000178879.3 |
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| CDS GCA 90 bp | ACCCAGCTTCTCTGTGGCTTCCACGCAGACGCTAGGATACATGCCTaGAGTGTAAGTTGCCACCACAAGATACATGTTGGTCTTCACCAC | + |
|
Preference number: 5 (lower is better) Translates to: TQLLCGFHADARIHA*SVSCHHKIHVGLHH Trigger: GTGGTGAAGACCAACATGTATCTTGTGGTGGCAACTTACACTGCAGGCATGTATCCTAGCGTCTGCGTGGAAGCCACAGAGAAGCTGGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219503.2 |
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| CDS-3UTR CAA 90 bp | ATTCTTGGCATATCTGGCAAGATGTGTGGGGACTTGGAGATAAGACTCCCAGGAACCACAAGATACATGTaGGTCTTCACCACCACCACA | + |
|
Preference number: 5 (lower is better) Translates to: ILGISGKMCGDLEIRLPGTTRYM*VFTTTT Trigger: TGTGGTGGTGGTGAAGACCAACATGTATCTTGTGGT...TCCTGGGAGTCTTATCTCCAAGTCCCCACACATCTTGCCAGATATGCCAAGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| CDS TCA 90 bp | ATTCAGAAGTGTTCGAACATCACTTGGCATTACACTAAATCCTGGTaGTGTCACACACAGGGTCTTTTCCTGGAGTTTGATGAGGGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: IQKCSNITWHYTKSW*CHTQGLFLEFDEGC Trigger: GCAGCCCTCATCAAACTCCAGGAAAAGACCCTGTGTGTGACATCACCAGGATTTAGTGTAATGCCAAGTGATGTTCGAACACTTCTGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000020967.11 ENSMUST00000178879.3 ENSMUST00000219438.2 ENSMUST00000219503.2 |
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| CDS-3UTR CAA 90 bp | GTCTGTGACCAAAGCTTAAAGAAAAGGGAAAAGCTGGTCAGGTCCTTCCAGTTAACCACAAGATACATGTaGGTCTTCACCACCACCACA | + |
|
Preference number: 5 (lower is better) Translates to: VCDQSLKKREKLVRSFQLTTRYM*VFTTTT Trigger: TGTGGTGGTGGTGAAGACCAACATGTATCTTGTGGT...TAACTGGAAGGACCTGACCAGCTTTTCCCTTTTCTTTAAGCTTTGGTCACAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| CDS TCA 90 bp | AGAGAGAATAGTCATCTGCCCGAACACATTTGTAATCCTTCTCCTTaGAATACAACCCTTCCCTTCGCGTTAATAATGGGTTTTTGGCAA | + |
|
Preference number: 5 (lower is better) Translates to: RENSHLPEHICNPSP*NTTLPFALIMGFWQ Trigger: TTGCCAAAAACCCATTATTAACGCGAAGGGAAGGGTTGTATTTCAAGGAGAAGGATTACAAATGTGTTCGGGCAGATGACTATTCTCTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020967.11 ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| CDS GCA 72 bp | CACACACAGGGTCTTTTCCTGGAGTTTGATGAGGGCTaGGCTGTCCACGTGTTTCGTCCCCAGCAGGGTATC | + |
|
Preference number: 6 (lower is better) Translates to: HTQGLFLEFDEG*AVHVFRPQQGI Trigger: GATACCCTGCTGGGGACGAAACACGTGGACAGCGCAGCCCTCATCAAACTCCAGGAAAAGACCCTGTGTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000020967.11 ENSMUST00000178879.3 ENSMUST00000219438.2 ENSMUST00000219503.2 |
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| CDS GCA 72 bp | CACGCAGACGCTAGGATACATGCCTGCAGTGTAAGTTaGCACCACAAGATACATGTTGGTCTTCACCACCAC | + |
|
Preference number: 6 (lower is better) Translates to: HADARIHACSVS*HHKIHVGLHHH Trigger: GTGGTGGTGAAGACCAACATGTATCTTGTGGTGGCAACTTACACTGCAGGCATGTATCCTAGCGTCTGCGTG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020967.11 ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| CDS TCA 72 bp | AGTCATCTGCCCGAACACATTTGTAATCCTTCTCCTTaGAATACAACCCTTCCCTTCGCGTTAATAATGGGT | + |
|
Preference number: 6 (lower is better) Translates to: SHLPEHICNPSP*NTTLPFALIMG Trigger: ACCCATTATTAACGCGAAGGGAAGGGTTGTATTTCAAGGAGAAGGATTACAAATGTGTTCGGGCAGATGACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020967.11 ENSMUST00000178879.3 ENSMUST00000219503.2 |
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| CDS CCA 72 bp | AATACAACCCTTCCCTTCGCGTTAATAATGGGTTTTTaGCAAATCCATTCAGAAGTGTTCGAACATCACTTG | + |
|
Preference number: 6 (lower is better) Translates to: NTTLPFALIMGF*QIHSEVFEHHL Trigger: CAAGTGATGTTCGAACACTTCTGAATGGATTTGCCAAAAACCCATTATTAACGCGAAGGGAAGGGTTGTATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000020967.11 ENSMUST00000178879.3 ENSMUST00000219438.2 ENSMUST00000219503.2 |
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| CDS GCA 72 bp | AGTGTTCTCATTCTTAGCATAGAGAGAATAGTCATCTaGCCGAACACATTTGTAATCCTTCTCCTTGAAATA | + |
|
Preference number: 6 (lower is better) Translates to: SVLILSIERIVI*PNTFVILLLEI Trigger: TATTTCAAGGAGAAGGATTACAAATGTGTTCGGGCAGATGACTATTCTCTCTATGCTAAGAATGAGAACACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020967.11 ENSMUST00000178879.3 ENSMUST00000219503.2 |
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