RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PFN3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044444

Ensembl transcript IDs: ENSMUST00000054146.5

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CAGCAGCGGCGGCCTGCCACGCTCAGACCCGTCTGCAGAAAGGTGTaGCGGTCTGGCCCGGTGAGCACACCCACCTCCTGCGGGGAGATG +
Preference number: 5 (lower is better)
Translates to: QQRRPATLRPVCRKV*RSGPVSTPTSCGEM
Trigger: CATCTCCCCGCAGGAGGTGGGTGTGCTCACCGGGCCAGACCGGCACACCTTTCTGCAGACGGGTCTGAGCGTGGCAGGCCGCCGCTGCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS GCA 90 bp TGCAGAAAGGTGTGCCGGTCTGGCCCGGTGAGCACACCCACCTCCTaGGGGGAGATGGCAGCCAGCAGACCCCCAGGCCGTGATGCCCAC +
Preference number: 5 (lower is better)
Translates to: CRKVCRSGPVSTPTS*GEMAASRPPGRDAH
Trigger: GTGGGCATCACGGCCTGGGGGTCTGCTGGCTGCCATCTCCCCGCAGGAGGTGGGTGTGCTCACCGGGCCAGACCGGCACACCTTTCTGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS GCA 90 bp TCACGGATAACGCAGCAGCGGCGGCCTGCCACGCTCAGACCCGTCTaGAGAAAGGTGTGCCGGTCTGGCCCGGTGAGCACACCCACCTCC +
Preference number: 5 (lower is better)
Translates to: SRITQQRRPATLRPV*RKVCRSGPVSTPTS
Trigger: GGAGGTGGGTGTGCTCACCGGGCCAGACCGGCACACCTTTCTGCAGACGGGTCTGAGCGTGGCAGGCCGCCGCTGCTGCGTTATCCGTGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS GCA 90 bp ACCCTCGGCCAGCAGGTAGTCACGGATAACGCAGCAGCGGCGGCCTaGCACGCTCAGACCCGTCTGCAGAAAGGTGTGCCGGTCTGGCCC +
Preference number: 5 (lower is better)
Translates to: TLGQQVVTDNAAAAA*HAQTRLQKGVPVWP
Trigger: GGGCCAGACCGGCACACCTTTCTGCAGACGGGTCTGAGCGTGGCAGGCCGCCGCTGCTGCGTTATCCGTGACTACCTGCTGGCCGAGGGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS CCA 90 bp CCCGTGGCGTGTGGCCCACACAGATTGCACGCCCGTCTAGCCCCTTaGTGCGCGCATCCAGTACGCCGTCACCCTCGGCCAGCAGGTAGT +
Preference number: 5 (lower is better)
Translates to: PVACGPHRLHARLAP*CAHPVRRHPRPAGS
Trigger: ACTACCTGCTGGCCGAGGGTGACGGCGTACTGGATGCGCGCACCAAGGGGCTAGACGGGCGTGCAATCTGTGTGGGCCACACGCCACGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS TCA 90 bp ACCCACCTCCTGCGGGGAGATGGCAGCCAGCAGACCCCCAGGCCGTaGTGCCCACACACAGCGATTGTCCGAGTGGCCCACGATAGCCAC +
Preference number: 5 (lower is better)
Translates to: THLLRGDGSQQTPRP*CPHTAIVRVAHDSH
Trigger: GTGGCTATCGTGGGCCACTCGGACAATCGCTGTGTGTGGGCATCACGGCCTGGGGGTCTGCTGGCTGCCATCTCCCCGCAGGAGGTGGGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS GCA 90 bp GTGGCGTGTGGCCCACACAGATTGCACGCCCGTCTAGCCCCTTGGTaGGCGCATCCAGTACGCCGTCACCCTCGGCCAGCAGGTAGTCAC +
Preference number: 5 (lower is better)
Translates to: VACGPHRLHARLAPW*AHPVRRHPRPAGSH
Trigger: GTGACTACCTGCTGGCCGAGGGTGACGGCGTACTGGATGCGCGCACCAAGGGGCTAGACGGGCGTGCAATCTGTGTGGGCCACACGCCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS GCA 90 bp AGCCCACCAATCAGATCGTGCACTGTCTTATTGAGGATGCCTCCATaGACGCCTCGTCTGCCCATGAGCACCAGGAGCGCCCGTGGCGTG +
Preference number: 5 (lower is better)
Translates to: SPPIRSCTVLLRMPP*TPRLPMSTRSARGV
Trigger: CACGCCACGGGCGCTCCTGGTGCTCATGGGCAGACGAGGCGTGCATGGAGGCATCCTCAATAAGACAGTGCACGATCTGATTGGTGGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS GCA 72 bp GTGTGCCGGTCTGGCCCGGTGAGCACACCCACCTCCTaGGGGGAGATGGCAGCCAGCAGACCCCCAGGCCGT +
Preference number: 6 (lower is better)
Translates to: VCRSGPVSTPTS*GEMAASRPPGR
Trigger: ACGGCCTGGGGGTCTGCTGGCTGCCATCTCCCCGCAGGAGGTGGGTGTGCTCACCGGGCCAGACCGGCACAC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS GCA 72 bp CGGCCTGCCACGCTCAGACCCGTCTGCAGAAAGGTGTaGCGGTCTGGCCCGGTGAGCACACCCACCTCCTGC +
Preference number: 6 (lower is better)
Translates to: RPATLRPVCRKV*RSGPVSTPTSC
Trigger: GCAGGAGGTGGGTGTGCTCACCGGGCCAGACCGGCACACCTTTCTGCAGACGGGTCTGAGCGTGGCAGGCCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS GCA 72 bp ACGCAGCAGCGGCGGCCTGCCACGCTCAGACCCGTCTaGAGAAAGGTGTGCCGGTCTGGCCCGGTGAGCACA +
Preference number: 6 (lower is better)
Translates to: TQQRRPATLRPV*RKVCRSGPVST
Trigger: TGTGCTCACCGGGCCAGACCGGCACACCTTTCTGCAGACGGGTCTGAGCGTGGCAGGCCGCCGCTGCTGCGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS CAA 72 bp GCACCAGGAGCGCCCGTGGCGTGTGGCCCACACAGATaGCACGCCCGTCTAGCCCCTTGGTGCGCGCATCCA +
Preference number: 6 (lower is better)
Translates to: APGAPVACGPHR*HARLAPWCAHP
Trigger: TGGATGCGCGCACCAAGGGGCTAGACGGGCGTGCAATCTGTGTGGGCCACACGCCACGGGCGCTCCTGGTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS TCA 72 bp CTGCGGGGAGATGGCAGCCAGCAGACCCCCAGGCCGTaGTGCCCACACACAGCGATTGTCCGAGTGGCCCAC +
Preference number: 6 (lower is better)
Translates to: LRGDGSQQTPRP*CPHTAIVRVAH
Trigger: GTGGGCCACTCGGACAATCGCTGTGTGTGGGCATCACGGCCTGGGGGTCTGCTGGCTGCCATCTCCCCGCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS GCA 72 bp GGCCCACACAGATTGCACGCCCGTCTAGCCCCTTGGTaGGCGCATCCAGTACGCCGTCACCCTCGGCCAGCA +
Preference number: 6 (lower is better)
Translates to: GPHRLHARLAPW*AHPVRRHPRPA
Trigger: TGCTGGCCGAGGGTGACGGCGTACTGGATGCGCGCACCAAGGGGCTAGACGGGCGTGCAATCTGTGTGGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS CCA 72 bp CACGCTCAGACCCGTCTGCAGAAAGGTGTGCCGGTCTaGCCCGGTGAGCACACCCACCTCCTGCGGGGAGAT +
Preference number: 6 (lower is better)
Translates to: HAQTRLQKGVPV*PGEHTHLLRGD
Trigger: ATCTCCCCGCAGGAGGTGGGTGTGCTCACCGGGCCAGACCGGCACACCTTTCTGCAGACGGGTCTGAGCGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS CCA 72 bp TGTGGCCCACACAGATTGCACGCCCGTCTAGCCCCTTaGTGCGCGCATCCAGTACGCCGTCACCCTCGGCCA +
Preference number: 6 (lower is better)
Translates to: CGPHRLHARLAP*CAHPVRRHPRP
Trigger: TGGCCGAGGGTGACGGCGTACTGGATGCGCGCACCAAGGGGCTAGACGGGCGTGCAATCTGTGTGGGCCACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS GCA 72 bp CAGCAGGTAGTCACGGATAACGCAGCAGCGGCGGCCTaGCACGCTCAGACCCGTCTGCAGAAAGGTGTGCCG +
Preference number: 6 (lower is better)
Translates to: QQVVTDNAAAAA*HAQTRLQKGVP
Trigger: CGGCACACCTTTCTGCAGACGGGTCTGAGCGTGGCAGGCCGCCGCTGCTGCGTTATCCGTGACTACCTGCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS CAA 72 bp AGCAGACCCCCAGGCCGTGATGCCCACACACAGCGATaGTCCGAGTGGCCCACGATAGCCACGTCATCGATC +
Preference number: 6 (lower is better)
Translates to: SRPPGRDAHTQR*SEWPTIATSSI
Trigger: GATCGATGACGTGGCTATCGTGGGCCACTCGGACAATCGCTGTGTGTGGGCATCACGGCCTGGGGGTCTGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS GCA 72 bp ATCAGATCGTGCACTGTCTTATTGAGGATGCCTCCATaGACGCCTCGTCTGCCCATGAGCACCAGGAGCGCC +
Preference number: 6 (lower is better)
Translates to: IRSCTVLLRMPP*TPRLPMSTRSA
Trigger: GGCGCTCCTGGTGCTCATGGGCAGACGAGGCGTGCATGGAGGCATCCTCAATAAGACAGTGCACGATCTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5
CDS CAA 72 bp TCACGCAGCCCACCAATCAGATCGTGCACTGTCTTATaGAGGATGCCTCCATGCACGCCTCGTCTGCCCATG +
Preference number: 6 (lower is better)
Translates to: SRSPPIRSCTVL*RMPPCTPRLPM
Trigger: CATGGGCAGACGAGGCGTGCATGGAGGCATCCTCAATAAGACAGTGCACGATCTGATTGGTGGGCTGCGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054146.5